From 112931f5a96fe162af76425e15bf441daf14d94c Mon Sep 17 00:00:00 2001 From: Giancarlo Panichi Date: Thu, 12 May 2016 17:20:39 +0000 Subject: [PATCH] 2521: Explore the possibility to port the StatMan interface onto Dataminer https://support.d4science.org/issues/2521 Added Show Image to Computations Viewer git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/portlets/user/data-miner-manager@128580 82a268e6-3cf1-43bd-a215-b396298e98cf --- .../client/DataMinerManager.java | 10 +- .../client/DataMinerManagerController.java | 5 +- .../dataminermanager/client/HomePanel.java | 3 + .../ComputationValueFilePanel.java | 66 + .../ComputationValueImagePanel.java | 75 + .../computations/ComputationsPanel.java | 45 +- .../computations/ComputationsProperties.java | 2 +- .../computations/ComputationsViewerPanel.java | 377 +- ...ancelComputationExecutionRequestEvent.java | 2 +- .../client/events/ComputationDataEvent.java | 2 +- .../client/events/OutputDataRequestEvent.java | 2 +- .../ResubmitComputationExecutionEvent.java | 2 +- .../StartComputationExecutionEvent.java | 2 +- .../experiments/ComputationOutputPanel.java | 48 +- .../experiments/ComputationStatusPanel.java | 2 +- .../client/experiments/OperatorsPanel.java | 2 +- .../client/experiments/WorkflowPanel.java | 4 +- .../client/rpc/DataMinerPortletService.java | 4 +- .../rpc/DataMinerPortletServiceAsync.java | 4 +- .../client/widgets/FileViewer.java | 67 + .../{ImagesViewer.java => ImageViewer.java} | 16 +- .../server/DataMinerManagerServiceImpl.java | 5 +- .../server/{util => }/SessionUtil.java | 20 +- .../server/news/OperatorsNewsProducer.java | 2 +- .../server/smservice/SClient.java | 4 +- .../server/smservice/SClient4WPS.java | 30 +- .../ComputationValueBuilder.java | 143 + .../dataminermanager/shared/Constants.java | 2 +- .../shared/data/OutputData.java | 1 + .../{ => computations}/ComputationData.java | 18 +- .../{ => computations}/ComputationId.java | 2 +- .../data/computations/ComputationValue.java | 56 + .../computations/ComputationValueFile.java | 49 + .../computations/ComputationValueImage.java | 47 + .../computations/ComputationValueType.java | 11 + ...ImagesResource.java => ImageResource.java} | 10 +- .../shared/data/output/Resource.java | 4 +- .../dataminermanager/dataminermanager.gwt.xml | 9 +- test.log.1 | 317663 --------------- test.log.2 | 231708 ----------- 40 files changed, 807 insertions(+), 549717 deletions(-) create mode 100644 src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationValueFilePanel.java create mode 100644 src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationValueImagePanel.java create mode 100644 src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/FileViewer.java rename src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/{ImagesViewer.java => ImageViewer.java} (90%) rename src/main/java/org/gcube/portlets/user/dataminermanager/server/{util => }/SessionUtil.java (84%) create mode 100644 src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/wps/computationsvalue/ComputationValueBuilder.java rename src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/{ => computations}/ComputationData.java (80%) rename src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/{ => computations}/ComputationId.java (94%) create mode 100644 src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValue.java create mode 100644 src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueFile.java create mode 100644 src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueImage.java create mode 100644 src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueType.java rename src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/{ImagesResource.java => ImageResource.java} (80%) delete mode 100644 test.log.1 delete mode 100644 test.log.2 diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/DataMinerManager.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/DataMinerManager.java index 70f38b0..69b9e50 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/DataMinerManager.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/DataMinerManager.java @@ -39,7 +39,7 @@ public class DataMinerManager implements EntryPoint { private DataMinerManagerController dataMinerManagerController; private Header header; - private HomePanel homeMenu; + private HomePanel homePanel; private DataSpacePanel dataSpacePanel; private ExperimentPanel experimentPanel; private ComputationsPanel computationsPanel; @@ -95,7 +95,7 @@ public class DataMinerManager implements EntryPoint { private void loadMainPanel() { dataMinerManagerController = new DataMinerManagerController(); - homeMenu = new HomePanel(); + homePanel = new HomePanel(); dataSpacePanel = new DataSpacePanel(); experimentPanel = new ExperimentPanel(); computationsPanel = new ComputationsPanel(); @@ -126,8 +126,8 @@ public class DataMinerManager implements EntryPoint { mainPanelLayout.setNorthWidget(header, menuData); // - centerPanel.add(homeMenu); - previousPanel = homeMenu; + centerPanel.add(homePanel); + previousPanel = homePanel; bindWindow(mainPanelLayout); mainPanelLayout.forceLayout(); @@ -207,7 +207,7 @@ public class DataMinerManager implements EntryPoint { switchPanel(experimentPanel); break; case HOME: - switchPanel(homeMenu); + switchPanel(homePanel); break; default: break; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/DataMinerManagerController.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/DataMinerManagerController.java index 6f229be..03f81f8 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/DataMinerManagerController.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/DataMinerManagerController.java @@ -29,9 +29,9 @@ import org.gcube.portlets.user.dataminermanager.client.type.DataMinerWorkAreaEve import org.gcube.portlets.user.dataminermanager.client.type.MenuType; import org.gcube.portlets.user.dataminermanager.client.util.UtilsGXT3; import org.gcube.portlets.user.dataminermanager.shared.Constants; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationData; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.data.OutputData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.exception.ExpiredSessionServiceException; import org.gcube.portlets.user.dataminermanager.shared.session.UserInfo; import org.gcube.portlets.user.dataminermanager.shared.workspace.DataMinerWorkArea; @@ -644,6 +644,7 @@ public class DataMinerManagerController { monitor.hide(); Log.error("Error in getComputationData: " + caught.getLocalizedMessage()); + caught.printStackTrace(); UtilsGXT3 .alert("Error", "Impossible to retrieve computation info. " diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/HomePanel.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/HomePanel.java index ce33470..b5f7bf0 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/HomePanel.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/HomePanel.java @@ -9,6 +9,7 @@ import com.google.gwt.event.dom.client.MouseDownHandler; import com.google.gwt.resources.client.ImageResource; import com.google.gwt.user.client.ui.HTML; import com.google.gwt.user.client.ui.Image; +import com.sencha.gxt.core.client.dom.ScrollSupport.ScrollMode; import com.sencha.gxt.core.client.util.Margins; import com.sencha.gxt.widget.core.client.container.HorizontalLayoutContainer; import com.sencha.gxt.widget.core.client.container.HorizontalLayoutContainer.HorizontalLayoutData; @@ -31,6 +32,7 @@ public class HomePanel extends SimpleContainer { } private void init() { + setItemId("HomePanel"); setStylePrimaryName("smMenu"); //setBodyStyle("backgroundColor:white;"); addStyleName("smLayoutContainer"); @@ -42,6 +44,7 @@ public class HomePanel extends SimpleContainer { private void create() { VerticalLayoutContainer lc = new VerticalLayoutContainer(); + lc.setScrollMode(ScrollMode.AUTO); VerticalLayoutData layoutTop = new VerticalLayoutData(-1, -1, new Margins(20, 90, 10, 90)); VerticalLayoutData layoutNext = new VerticalLayoutData(-1, -1, diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationValueFilePanel.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationValueFilePanel.java new file mode 100644 index 0000000..442c795 --- /dev/null +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationValueFilePanel.java @@ -0,0 +1,66 @@ +package org.gcube.portlets.user.dataminermanager.client.computations; + +import org.gcube.portlets.user.dataminermanager.client.DataMinerManager; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationValueFile; + +import com.google.gwt.safehtml.shared.SafeHtmlBuilder; +import com.sencha.gxt.core.client.util.Margins; +import com.sencha.gxt.widget.core.client.button.TextButton; +import com.sencha.gxt.widget.core.client.container.HtmlLayoutContainer; +import com.sencha.gxt.widget.core.client.container.SimpleContainer; +import com.sencha.gxt.widget.core.client.container.VerticalLayoutContainer; +import com.sencha.gxt.widget.core.client.container.VerticalLayoutContainer.VerticalLayoutData; +import com.sencha.gxt.widget.core.client.event.SelectEvent; + +/** + * + * @author Giancarlo Panichi email: g.panichi@isti.cnr.it + * + */ +public class ComputationValueFilePanel extends SimpleContainer { + private ComputationValueFile computationValueFile; + + public ComputationValueFilePanel(ComputationValueFile computationValueFile) { + this.computationValueFile = computationValueFile; + init(); + create(); + } + + private void init(){ + setBorders(false); + } + + private void create() { + VerticalLayoutContainer lc = new VerticalLayoutContainer(); + final String fileName = computationValueFile.getFileName(); + final String fileUrl = computationValueFile.getValue(); + HtmlLayoutContainer fileNameHtml; + if (fileName != null) { + fileNameHtml = new HtmlLayoutContainer( + "

" + + new SafeHtmlBuilder().appendEscaped(fileName) + .toSafeHtml().asString() + "

"); + } else { + fileNameHtml = new HtmlLayoutContainer( + "

" + + new SafeHtmlBuilder().appendEscaped("NoName") + .toSafeHtml().asString() + "

"); + } + + lc.add(fileNameHtml, new VerticalLayoutData(-1, -1, new Margins(0))); + TextButton downloadBtn = new TextButton("Download File"); + downloadBtn.setIcon(DataMinerManager.resources.fileDownload()); + downloadBtn.addSelectHandler(new SelectEvent.SelectHandler() { + @Override + public void onSelect(SelectEvent event) { + com.google.gwt.user.client.Window.open(fileUrl, fileName, ""); + + } + }); + + lc.add(downloadBtn, new VerticalLayoutData(-1, -1, new Margins(0))); + add(lc); + } + +} diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationValueImagePanel.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationValueImagePanel.java new file mode 100644 index 0000000..98d427e --- /dev/null +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationValueImagePanel.java @@ -0,0 +1,75 @@ +package org.gcube.portlets.user.dataminermanager.client.computations; + +import org.gcube.portlets.user.dataminermanager.client.DataMinerManager; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationValueImage; + +import com.google.gwt.user.client.ui.Image; +import com.sencha.gxt.core.client.util.Margins; +import com.sencha.gxt.widget.core.client.button.TextButton; +import com.sencha.gxt.widget.core.client.container.HtmlLayoutContainer; +import com.sencha.gxt.widget.core.client.container.SimpleContainer; +import com.sencha.gxt.widget.core.client.container.VerticalLayoutContainer; +import com.sencha.gxt.widget.core.client.container.VerticalLayoutContainer.VerticalLayoutData; +import com.sencha.gxt.widget.core.client.event.SelectEvent; + +/** + * + * @author Giancarlo Panichi email: g.panichi@isti.cnr.it + * + */ +public class ComputationValueImagePanel extends SimpleContainer { + private ComputationValueImage computationValueImage; + + public ComputationValueImagePanel( + ComputationValueImage computationValueImage) { + this.computationValueImage = computationValueImage; + init(); + create(); + } + + private void init() { + setBorders(false); + } + + private void create() { + VerticalLayoutContainer v = new VerticalLayoutContainer(); + add(v); + if (computationValueImage == null + || computationValueImage.getValue() == null + || computationValueImage.getValue().isEmpty()) + v.add(new HtmlLayoutContainer("No image found."), + new VerticalLayoutData(-1, -1, new Margins(0))); + else { + HtmlLayoutContainer imageName; + if (computationValueImage.getFileName() == null + || computationValueImage.getFileName().isEmpty()) { + imageName = new HtmlLayoutContainer(""); + } else { + imageName = new HtmlLayoutContainer( + computationValueImage.getFileName()); + } + + v.add(imageName, new VerticalLayoutData(-1, -1, new Margins(0))); + TextButton saveImageBtn = new TextButton("Download Image"); + saveImageBtn.setIcon(DataMinerManager.resources.save()); + saveImageBtn.addSelectHandler(new SelectEvent.SelectHandler() { + + @Override + public void onSelect(SelectEvent event) { + com.google.gwt.user.client.Window.open( + computationValueImage.getValue(), + computationValueImage.getFileName(), ""); + } + }); + + v.add(saveImageBtn, new VerticalLayoutData(-1, -1, new Margins(0))); + final Image img = new Image(computationValueImage.getValue()); + v.add(img, new VerticalLayoutData(1, -1, new Margins(0))); + } + + forceLayout(); + + } + +} diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsPanel.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsPanel.java index 135de65..04ba108 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsPanel.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsPanel.java @@ -5,6 +5,7 @@ package org.gcube.portlets.user.dataminermanager.client.computations; import org.gcube.portlets.user.dataminermanager.client.common.EventBusProvider; import org.gcube.portlets.user.dataminermanager.client.events.ComputationDataEvent; +import org.gcube.portlets.user.dataminermanager.client.events.RefreshDataMinerWorkAreaEvent; import com.allen_sauer.gwt.log.client.Log; import com.sencha.gxt.core.client.util.Margins; @@ -45,19 +46,57 @@ public class ComputationsPanel extends FramedPanel { @Override public void onComputationData(ComputationDataEvent event) { Log.debug("Catch ComputationDataEvent: " + event); - showComputationsViewer(event); + expandsComputationsViewer(); } }); + EventBusProvider.INSTANCE + .addHandler( + RefreshDataMinerWorkAreaEvent.TYPE, + new RefreshDataMinerWorkAreaEvent.RefreshDataMinerWorkAreaEventHandler() { + + @Override + public void onRefresh( + RefreshDataMinerWorkAreaEvent event) { + Log.debug("Catch RefreshDataMinerWorkAreaEvent: " + + event); + manageRefreshDataMinerWorkAreaEvents(event); + } + + }); } + private void manageRefreshDataMinerWorkAreaEvents( + RefreshDataMinerWorkAreaEvent event) { + switch (event.getDataMinerWorkAreaElementType()) { + case Computations: + collapseComputationsViewer(); + break; + case InputDataSets: + break; + case OutputDataSets: + break; + default: + break; + } - private void showComputationsViewer(ComputationDataEvent event) { + } + + private void collapseComputationsViewer() { + if(computationsViewerPanel.isExpanded()){ + computationsViewerPanel.collapse(); + } + forceLayout(); + } + + + private void expandsComputationsViewer() { if(computationsViewerPanel.isCollapsed()){ computationsViewerPanel.expand(); } + forceLayout(); } private void create() { @@ -78,7 +117,7 @@ public class ComputationsPanel extends FramedPanel { add(borderLayoutContainer, new MarginData(new Margins(0))); - + forceLayout(); } diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsProperties.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsProperties.java index 5f17fd5..a74f825 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsProperties.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsProperties.java @@ -8,7 +8,7 @@ package org.gcube.portlets.user.dataminermanager.client.computations; */ public enum ComputationsProperties { OPERATOR_DESCRIPTION("operator_description"), OPERATOR_NAME( - "operator_name:"), END_DATE("end_date"), ERROR("error"), COMPUTATION_ID( + "operator_name"), END_DATE("end_date"), ERROR("error"), COMPUTATION_ID( "computation_id"), STATUS("status"), VRE("VRE"), EXECUTION_TYPE( "execution_type"), START_DATE("start_date"); diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsViewerPanel.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsViewerPanel.java index 3d2f94e..900d275 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsViewerPanel.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/computations/ComputationsViewerPanel.java @@ -1,6 +1,5 @@ package org.gcube.portlets.user.dataminermanager.client.computations; -import java.util.ArrayList; import java.util.LinkedHashMap; import org.gcube.portlets.user.dataminermanager.client.common.EventBusProvider; @@ -9,16 +8,13 @@ import org.gcube.portlets.user.dataminermanager.client.events.DataMinerWorkAreaE import org.gcube.portlets.user.dataminermanager.client.events.RefreshDataMinerWorkAreaEvent; import org.gcube.portlets.user.dataminermanager.client.events.UIStateEvent; import org.gcube.portlets.user.dataminermanager.client.util.UtilsGXT3; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationValue; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationValueFile; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationValueImage; import com.allen_sauer.gwt.log.client.Log; import com.google.gwt.dom.client.Style.Unit; -import com.google.gwt.http.client.Request; -import com.google.gwt.http.client.RequestBuilder; -import com.google.gwt.http.client.RequestCallback; -import com.google.gwt.http.client.RequestException; -import com.google.gwt.http.client.Response; -import com.google.gwt.http.client.URL; import com.sencha.gxt.core.client.dom.ScrollSupport.ScrollMode; import com.sencha.gxt.core.client.util.Margins; import com.sencha.gxt.widget.core.client.FramedPanel; @@ -42,8 +38,6 @@ public class ComputationsViewerPanel extends FramedPanel { private VerticalLayoutContainer v; private ComputationData computationData; - private ArrayList urlList; - private LinkedHashMap urlFileNameMap; public ComputationsViewerPanel() { super(); @@ -179,26 +173,19 @@ public class ComputationsViewerPanel extends FramedPanel { sectionTitle.add(title); v.add(sectionTitle, new VerticalLayoutData(-1, -1, new Margins(20))); computationData = null; + v.forceLayout(); forceLayout(); } private void showOutput(ComputationDataEvent event) { v.clear(); computationData = event.getComputationData(); - addComputationData(); + createView(); + v.forceLayout(); + forceLayout(); } - - - private void addComputationData() { - - - - - } - - - private void createView(){ + private void createView() { if (computationData == null) { Log.error("ComputationData is null!"); UtilsGXT3.alert("Error", @@ -209,7 +196,7 @@ public class ComputationsViewerPanel extends FramedPanel { SimpleContainer sectionTitle = new SimpleContainer(); // title HtmlLayoutContainer title = new HtmlLayoutContainer( - "
.: Computation Report of " + "
Computation Report of " + computationData.getComputationId().getId() + "
"); sectionTitle.add(title, new MarginData()); @@ -219,98 +206,29 @@ public class ComputationsViewerPanel extends FramedPanel { if (computationData.getOutputParameters() != null && !computationData.getOutputParameters().isEmpty()) { - VerticalLayoutContainer outputVBox = new VerticalLayoutContainer(); - LinkedHashMap output = computationData - .getOutputParameters(); - for (String key : output.keySet()) { - TextField textField = new TextField(); - textField.setValue(output.get(key)); - textField.setReadOnly(true); - FieldLabel fieldLabel = new FieldLabel(textField, key); - fieldLabel.setLabelWidth(200); - fieldLabel.setLabelWordWrap(true); - outputVBox.add(fieldLabel, new VerticalLayoutData(1, -1, - new Margins(4))); - } - - FieldSet outputFieldSet = new FieldSet(); - outputFieldSet.setHeadingText("Output Result"); - outputFieldSet.setCollapsible(true); - outputFieldSet.add(outputVBox); - outputFieldSet.getElement().getStyle().setMarginRight(20, Unit.PX); + FieldSet outputFieldSet = outputView(); v.add(outputFieldSet, new VerticalLayoutData(-1, -1, new Margins(10))); } if (computationData.getInputParameters() != null && !computationData.getInputParameters().isEmpty()) { - VerticalLayoutContainer inputVBox = new VerticalLayoutContainer(); - LinkedHashMap input = computationData - .getInputParameters(); - for (String key : input.keySet()) { - TextField textField = new TextField(); - textField.setValue(input.get(key)); - textField.setReadOnly(true); - FieldLabel fieldLabel = new FieldLabel(textField, key); - fieldLabel.setLabelWidth(200); - fieldLabel.setLabelWordWrap(true); - inputVBox.add(fieldLabel, new VerticalLayoutData(1, -1, - new Margins(4))); - } - - FieldSet inputFieldSet = new FieldSet(); - inputFieldSet.setHeadingText("Input Parameters"); - inputFieldSet.setCollapsible(true); - inputFieldSet.add(inputVBox); - inputFieldSet.getElement().getStyle().setMarginRight(20, Unit.PX); + FieldSet inputFieldSet = inputView(); v.add(inputFieldSet, new VerticalLayoutData(-1, -1, new Margins(10))); } - VerticalLayoutContainer detailsVBox = new VerticalLayoutContainer(); - TextField startDateField = new TextField(); - startDateField.setValue(computationData.getStartDate()); - startDateField.setReadOnly(true); - FieldLabel startDateLabel = new FieldLabel(startDateField, "Start Date"); - startDateLabel.setLabelWidth(200); - startDateLabel.setLabelWordWrap(true); - detailsVBox.add(startDateLabel, new VerticalLayoutData(1, -1, - new Margins(4))); - - TextField endDateField = new TextField(); - endDateField.setValue(computationData.getEndDate()); - endDateField.setReadOnly(true); - FieldLabel endDateLabel = new FieldLabel(endDateField, "End Date"); - endDateLabel.setLabelWidth(200); - endDateLabel.setLabelWordWrap(true); - detailsVBox.add(endDateLabel, new VerticalLayoutData(1, -1, - new Margins(4))); - - TextField statusField = new TextField(); - statusField.setValue(computationData.getStatus()); - statusField.setReadOnly(true); - FieldLabel statusLabel = new FieldLabel(statusField, "Status"); - statusLabel.setLabelWidth(200); - statusLabel.setLabelWordWrap(true); - detailsVBox.add(statusLabel, new VerticalLayoutData(1, -1, new Margins( - 4))); - - TextField vreField = new TextField(); - vreField.setValue(computationData.getVre()); - vreField.setReadOnly(true); - FieldLabel vreLabel = new FieldLabel(vreField, "VRE"); - vreLabel.setLabelWidth(200); - vreLabel.setLabelWordWrap(true); - detailsVBox - .add(vreLabel, new VerticalLayoutData(1, -1, new Margins(4))); - - FieldSet detailsFieldSet = new FieldSet(); - detailsFieldSet.setHeadingText("Computation Details"); - detailsFieldSet.setCollapsible(true); - detailsFieldSet.add(detailsVBox); - detailsFieldSet.getElement().getStyle().setMarginRight(20, Unit.PX); + FieldSet detailsFieldSet = detailsView(); v.add(detailsFieldSet, new VerticalLayoutData(-1, -1, new Margins(10))); + FieldSet operatorFieldSet = operatorView(); + v.add(operatorFieldSet, new VerticalLayoutData(-1, -1, new Margins(10))); + + + + } + + private FieldSet operatorView() { VerticalLayoutContainer operatorVBox = new VerticalLayoutContainer(); TextField operatorNameField = new TextField(); operatorNameField.setValue(computationData.getComputationId() @@ -321,7 +239,7 @@ public class ComputationsViewerPanel extends FramedPanel { operatorNameLabel.setLabelWidth(200); operatorNameLabel.setLabelWordWrap(true); operatorVBox.add(operatorNameLabel, new VerticalLayoutData(1, -1, - new Margins(4))); + new Margins(0,4,0,4))); TextArea operatorDescriptionField = new TextArea(); operatorDescriptionField.setHeight(40); @@ -332,9 +250,9 @@ public class ComputationsViewerPanel extends FramedPanel { operatorDescriptionField, "Operator Description"); operatorDescriptionLabel.setLabelWidth(200); operatorDescriptionLabel.setLabelWordWrap(true); - operatorDescriptionLabel.setHeight(50); + operatorDescriptionLabel.setHeight(65); operatorVBox.add(operatorDescriptionLabel, new VerticalLayoutData(1, - -1, new Margins(5))); + -1, new Margins(0,5,0,5))); FieldSet operatorFieldSet = new FieldSet(); operatorFieldSet.setHeadingText("Operator Details"); @@ -343,132 +261,145 @@ public class ComputationsViewerPanel extends FramedPanel { operatorFieldSet.add(operatorVBox); operatorFieldSet.getElement().getStyle().setMarginBottom(120, Unit.PX); operatorFieldSet.getElement().getStyle().setMarginRight(20, Unit.PX); - v.add(operatorFieldSet, new VerticalLayoutData(-1, -1, new Margins(10))); - - forceLayout(); - - } - - /** - * - */ - private void createUrlList() { - urlList = new ArrayList(); - urlFileNameMap = new LinkedHashMap(); - - if (computationData.getOutputParameters() != null - && !computationData.getOutputParameters().isEmpty()) { - LinkedHashMap output = computationData - .getOutputParameters(); - for (String key : output.keySet()) { - String value = output.get(key); - if (value != null && !value.isEmpty() && value.startsWith("http")) { - urlList.add(value); - } - } - } - if (computationData.getInputParameters() != null - && !computationData.getInputParameters().isEmpty()) { - LinkedHashMap input = computationData - .getInputParameters(); - for (String key : input.keySet()) { - String value = input.get(key); - if (value != null && !value.isEmpty()&& value.startsWith("http")) { - urlList.add(value); - } - } - } - - if (!urlList.isEmpty()) { - retrieveUrlInformation(null); - } else { - - } - + return operatorFieldSet; } - private void retrieveUrlInformation(String url) { - if (url == null) { - if (urlList != null && !urlList.isEmpty()) { - retrieveFileName(urlList.get(0)); - } else { + private FieldSet detailsView() { + VerticalLayoutContainer detailsVBox = new VerticalLayoutContainer(); + TextField startDateField = new TextField(); + startDateField.setValue(computationData.getStartDate()); + startDateField.setReadOnly(true); + FieldLabel startDateLabel = new FieldLabel(startDateField, "Start Date"); + startDateLabel.setLabelWidth(200); + startDateLabel.setLabelWordWrap(true); + detailsVBox.add(startDateLabel, new VerticalLayoutData(1, -1, + new Margins(0,4,0,4))); + + TextField endDateField = new TextField(); + endDateField.setValue(computationData.getEndDate()); + endDateField.setReadOnly(true); + FieldLabel endDateLabel = new FieldLabel(endDateField, "End Date"); + endDateLabel.setLabelWidth(200); + endDateLabel.setLabelWordWrap(true); + detailsVBox.add(endDateLabel, new VerticalLayoutData(1, -1, + new Margins(0,4,0,4))); + + TextField statusField = new TextField(); + statusField.setValue(computationData.getStatus()); + statusField.setReadOnly(true); + FieldLabel statusLabel = new FieldLabel(statusField, "Status"); + statusLabel.setLabelWidth(200); + statusLabel.setLabelWordWrap(true); + detailsVBox.add(statusLabel, new VerticalLayoutData(1, -1, new Margins( + 0,4,0,4))); + + TextField vreField = new TextField(); + vreField.setValue(computationData.getVre()); + vreField.setReadOnly(true); + FieldLabel vreLabel = new FieldLabel(vreField, "VRE"); + vreLabel.setLabelWidth(200); + vreLabel.setLabelWordWrap(true); + detailsVBox + .add(vreLabel, new VerticalLayoutData(1, -1, new Margins(0,4,0,4))); + + FieldSet detailsFieldSet = new FieldSet(); + detailsFieldSet.setHeadingText("Computation Details"); + detailsFieldSet.setCollapsible(true); + detailsFieldSet.add(detailsVBox); + detailsFieldSet.getElement().getStyle().setMarginRight(20, Unit.PX); + return detailsFieldSet; + } + + private FieldSet inputView() { + VerticalLayoutContainer inputVBox = new VerticalLayoutContainer(); + LinkedHashMap input = computationData + .getInputParameters(); + for (String key : input.keySet()) { + ComputationValue computationValue = input.get(key); + FieldLabel fieldLabel = null; + SimpleContainer simpleContainer; + switch (computationValue.getType()) { + case File: + ComputationValueFile computationValueFile=(ComputationValueFile) computationValue; + simpleContainer=new ComputationValueFilePanel(computationValueFile); + fieldLabel = new FieldLabel(simpleContainer, key); + fieldLabel.setLabelWidth(200); + fieldLabel.setLabelWordWrap(true); + break; + case Image: + ComputationValueImage computationValueImage=(ComputationValueImage) computationValue; + simpleContainer=new ComputationValueImagePanel(computationValueImage); + fieldLabel = new FieldLabel(simpleContainer, key); + fieldLabel.setLabelWidth(200); + fieldLabel.setLabelWordWrap(true); + break; + case String: + default: + TextField textField = new TextField(); + textField.setValue(computationValue.getValue()); + textField.setReadOnly(true); + fieldLabel = new FieldLabel(textField, key); + fieldLabel.setLabelWidth(200); + fieldLabel.setLabelWordWrap(true); + break; } - } else { - int index=urlList.indexOf(url); - if(index==-1){ - - } else { - if(index==urlList.size()-1){ - - } else { - retrieveFileName(urlList.get(index++)); - } - } + inputVBox.add(fieldLabel, new VerticalLayoutData(1, -1, + new Margins(0,4,0,4))); } + + FieldSet inputFieldSet = new FieldSet(); + inputFieldSet.setHeadingText("Input Parameters"); + inputFieldSet.setCollapsible(true); + inputFieldSet.add(inputVBox); + inputFieldSet.getElement().getStyle().setMarginRight(20, Unit.PX); + return inputFieldSet; } - private void retrieveFileName(final String url) { + private FieldSet outputView() { + VerticalLayoutContainer outputVBox = new VerticalLayoutContainer(); + LinkedHashMap output = computationData + .getOutputParameters(); + for (String key : output.keySet()) { + ComputationValue computationValue = output.get(key); + FieldLabel fieldLabel = null; + SimpleContainer simpleContainer; + switch (computationValue.getType()) { + case File: + ComputationValueFile computationValueFile=(ComputationValueFile) computationValue; + simpleContainer=new ComputationValueFilePanel(computationValueFile); + fieldLabel = new FieldLabel(simpleContainer, key); + fieldLabel.setLabelWidth(200); + fieldLabel.setLabelWordWrap(true); + break; + case Image: + ComputationValueImage computationValueImage=(ComputationValueImage) computationValue; + simpleContainer=new ComputationValueImagePanel(computationValueImage); + fieldLabel = new FieldLabel(simpleContainer, key); + fieldLabel.setLabelWidth(200); + fieldLabel.setLabelWordWrap(true); + break; + case String: + default: + TextField textField = new TextField(); + textField.setValue(computationValue.getValue()); + textField.setReadOnly(true); + fieldLabel = new FieldLabel(textField, key); + fieldLabel.setLabelWidth(200); + fieldLabel.setLabelWordWrap(true); + break; - try { - RequestBuilder builder = new RequestBuilder(RequestBuilder.HEAD, - URL.encode(url)); + } + outputVBox.add(fieldLabel, new VerticalLayoutData(1, -1, + new Margins(0,4,0,4))); + } - builder.sendRequest(null, new RequestCallback() { - - @Override - public void onResponseReceived(Request request, - Response response) { - if (200 == response.getStatusCode()) { - String contentDisposition = response - .getHeader("Content-Disposition"); - // ContentDisposition = "attachment; filename=abc.jpg" - if (contentDisposition != null - && contentDisposition.indexOf("=") != -1) { - String fileName = contentDisposition.split("=")[1]; // getting - // value - // after - // '=' - urlFileNameMap.put(url, fileName); - retrieveUrlInformation(url); - } else { - urlFileNameMap.put(url, null); - retrieveUrlInformation(url); - } - } else { - urlFileNameMap.put(url, null); - retrieveUrlInformation(url); - } - } - - @Override - public void onError(Request request, Throwable exception) { - Log.error(exception.getLocalizedMessage()); - exception.printStackTrace(); - urlFileNameMap.put(url, null); - retrieveUrlInformation(url); - - } - }); - } catch (RequestException e) { - Log.error(e.getLocalizedMessage()); - e.printStackTrace(); - UtilsGXT3.alert("Error", "Error retrieving file name from public url!"); - } - - /* - * URL url = new URL("http://somesite/getFile?id=12345"); - * HttpURLConnection conn = (HttpURLConnection) url.openConnection(); - * conn.setRequestMethod("GET"); conn.setAllowUserInteraction(false); - * conn.setDoInput(true); conn.setDoOutput(true); conn.connect(); - * - * String raw = conn.getHeaderField("Content-Disposition"); // raw = - * "attachment; filename=abc.jpg" if (raw != null && raw.indexOf("=") != - * -1) { String fileName = raw.split("=")[1]; // getting value after '=' - * } else { // fall back to random generated file name? } - */ + FieldSet outputFieldSet = new FieldSet(); + outputFieldSet.setHeadingText("Output Result"); + outputFieldSet.setCollapsible(true); + outputFieldSet.add(outputVBox); + outputFieldSet.getElement().getStyle().setMarginRight(20, Unit.PX); + return outputFieldSet; } - - } diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/CancelComputationExecutionRequestEvent.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/CancelComputationExecutionRequestEvent.java index 06d6444..ba010a0 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/CancelComputationExecutionRequestEvent.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/CancelComputationExecutionRequestEvent.java @@ -1,6 +1,6 @@ package org.gcube.portlets.user.dataminermanager.client.events; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import com.google.gwt.event.shared.EventHandler; import com.google.gwt.event.shared.GwtEvent; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/ComputationDataEvent.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/ComputationDataEvent.java index bacb75c..031cb63 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/ComputationDataEvent.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/ComputationDataEvent.java @@ -1,6 +1,6 @@ package org.gcube.portlets.user.dataminermanager.client.events; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationData; import com.google.gwt.event.shared.EventHandler; import com.google.gwt.event.shared.GwtEvent; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/OutputDataRequestEvent.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/OutputDataRequestEvent.java index 9d4f484..8fff633 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/OutputDataRequestEvent.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/OutputDataRequestEvent.java @@ -1,6 +1,6 @@ package org.gcube.portlets.user.dataminermanager.client.events; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import com.google.gwt.event.shared.EventHandler; import com.google.gwt.event.shared.GwtEvent; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/ResubmitComputationExecutionEvent.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/ResubmitComputationExecutionEvent.java index 3890d00..006b984 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/ResubmitComputationExecutionEvent.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/ResubmitComputationExecutionEvent.java @@ -1,6 +1,6 @@ package org.gcube.portlets.user.dataminermanager.client.events; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import com.google.gwt.event.shared.EventHandler; import com.google.gwt.event.shared.GwtEvent; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/StartComputationExecutionEvent.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/StartComputationExecutionEvent.java index cfd978a..4cb157c 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/StartComputationExecutionEvent.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/events/StartComputationExecutionEvent.java @@ -1,6 +1,6 @@ package org.gcube.portlets.user.dataminermanager.client.events; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import com.google.gwt.event.shared.EventHandler; import com.google.gwt.event.shared.GwtEvent; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/ComputationOutputPanel.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/ComputationOutputPanel.java index dba9c2d..977a684 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/ComputationOutputPanel.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/ComputationOutputPanel.java @@ -6,16 +6,16 @@ package org.gcube.portlets.user.dataminermanager.client.experiments; import java.util.LinkedHashMap; import java.util.Map; -import org.gcube.portlets.user.dataminermanager.client.DataMinerManager; import org.gcube.portlets.user.dataminermanager.client.common.EventBusProvider; import org.gcube.portlets.user.dataminermanager.client.events.OutputDataEvent; import org.gcube.portlets.user.dataminermanager.client.events.OutputDataRequestEvent; import org.gcube.portlets.user.dataminermanager.client.util.UtilsGXT3; -import org.gcube.portlets.user.dataminermanager.client.widgets.ImagesViewer; +import org.gcube.portlets.user.dataminermanager.client.widgets.FileViewer; +import org.gcube.portlets.user.dataminermanager.client.widgets.ImageViewer; import org.gcube.portlets.user.dataminermanager.client.widgets.ResourceViewer; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.data.output.FileResource; -import org.gcube.portlets.user.dataminermanager.shared.data.output.ImagesResource; +import org.gcube.portlets.user.dataminermanager.shared.data.output.ImageResource; import org.gcube.portlets.user.dataminermanager.shared.data.output.MapResource; import org.gcube.portlets.user.dataminermanager.shared.data.output.ObjectResource; import org.gcube.portlets.user.dataminermanager.shared.data.output.Resource; @@ -25,15 +25,12 @@ import org.gcube.portlets.user.dataminermanager.shared.data.output.TableResource import com.allen_sauer.gwt.log.client.Log; import com.google.gwt.core.client.GWT; import com.google.gwt.safehtml.shared.SafeHtml; -import com.google.gwt.safehtml.shared.SafeHtmlBuilder; import com.sencha.gxt.core.client.XTemplates; import com.sencha.gxt.core.client.util.Margins; -import com.sencha.gxt.widget.core.client.button.TextButton; import com.sencha.gxt.widget.core.client.container.HtmlLayoutContainer; import com.sencha.gxt.widget.core.client.container.SimpleContainer; import com.sencha.gxt.widget.core.client.container.VerticalLayoutContainer; import com.sencha.gxt.widget.core.client.container.VerticalLayoutContainer.VerticalLayoutData; -import com.sencha.gxt.widget.core.client.event.SelectEvent; /** * @@ -128,10 +125,10 @@ public class ComputationOutputPanel extends SimpleContainer { // new VerticalLayoutData(1, -1, new Margins(0))); break; - case IMAGES: + case IMAGE: v.add(getHtmlTitle("The algorithm produced an", "Set of Images"), new VerticalLayoutData(1, -1, new Margins(0))); - final ImagesResource imagesResource = (ImagesResource) resource; + final ImageResource imagesResource = (ImageResource) resource; v.add(getImagesResourceOutput(imagesResource), new VerticalLayoutData(1, -1, new Margins(0))); break; @@ -184,8 +181,8 @@ public class ComputationOutputPanel extends SimpleContainer { * @return */ private SimpleContainer getImagesResourceOutput( - ImagesResource imagesResource) { - return new ImagesViewer(computationId, imagesResource); + ImageResource imagesResource) { + return new ImageViewer(computationId, imagesResource); } /** @@ -194,28 +191,7 @@ public class ComputationOutputPanel extends SimpleContainer { * @return */ private SimpleContainer getFileResourceOutput(FileResource fileResource) { - VerticalLayoutContainer lc = new VerticalLayoutContainer(); - SimpleContainer container = new SimpleContainer(); - final String fileName = fileResource.getName(); - final String fileUrl = fileResource.getUrl(); - HtmlLayoutContainer fileNameHtml = new HtmlLayoutContainer( - "

" - + new SafeHtmlBuilder().appendEscaped(fileName) - .toSafeHtml().asString() + "

"); - lc.add(fileNameHtml, new VerticalLayoutData(-1, -1, new Margins(0))); - TextButton downloadBtn = new TextButton("Download File"); - downloadBtn.setIcon(DataMinerManager.resources.fileDownload()); - downloadBtn.addSelectHandler(new SelectEvent.SelectHandler() { - @Override - public void onSelect(SelectEvent event) { - com.google.gwt.user.client.Window.open(fileUrl, fileName, ""); - - } - }); - - lc.add(downloadBtn, new VerticalLayoutData(-1, -1, new Margins(0))); - container.add(lc); - return container; + return new FileViewer(computationId, fileResource); } /** @@ -230,7 +206,7 @@ public class ComputationOutputPanel extends SimpleContainer { Map mapValues = new LinkedHashMap<>(); Map mapFiles = new LinkedHashMap<>(); Map mapTabs = new LinkedHashMap<>(); - Map mapImages = new LinkedHashMap<>(); + Map mapImages = new LinkedHashMap<>(); for (String key : map.keySet()) { Resource resource = map.get(key); @@ -246,8 +222,8 @@ public class ComputationOutputPanel extends SimpleContainer { case TABULAR: mapTabs.put(key, (TableResource) resource); break; - case IMAGES: - mapImages.put(key, (ImagesResource) resource); + case IMAGE: + mapImages.put(key, (ImageResource) resource); break; case MAP: break; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/ComputationStatusPanel.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/ComputationStatusPanel.java index 77cb40f..f5a8342 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/ComputationStatusPanel.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/ComputationStatusPanel.java @@ -12,7 +12,7 @@ import org.gcube.portlets.user.dataminermanager.client.events.CancelComputationE import org.gcube.portlets.user.dataminermanager.client.rpc.DataMinerPortletServiceAsync; import org.gcube.portlets.user.dataminermanager.client.util.UtilsGXT3; import org.gcube.portlets.user.dataminermanager.shared.Constants; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import com.allen_sauer.gwt.log.client.Log; import com.google.gwt.dom.client.Style.Unit; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/OperatorsPanel.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/OperatorsPanel.java index 1022e8f..cfb34f5 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/OperatorsPanel.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/OperatorsPanel.java @@ -84,7 +84,7 @@ public class OperatorsPanel extends FramedPanel { } private void init() { - setHeadingText(".: Operators"); + setHeadingText("Operators"); setBodyStyle("backgroundColor:white;"); } diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/WorkflowPanel.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/WorkflowPanel.java index d2dbd71..3b22d9f 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/WorkflowPanel.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/experiments/WorkflowPanel.java @@ -43,7 +43,7 @@ public class WorkflowPanel extends TabPanel { private void create() { - TabItemConfig tabWorkFlowLcItemConf = new TabItemConfig(".: Operator", + TabItemConfig tabWorkFlowLcItemConf = new TabItemConfig("Operator", false); tabWorkFlowLcItemConf.setIcon(DataMinerManager.resources .folderExplore()); @@ -61,7 +61,7 @@ public class WorkflowPanel extends TabPanel { add(computationPanel, tabWorkFlowLcItemConf); TabItemConfig tabComputationPanelItemConf = new TabItemConfig( - ".: Computations Execution", false); + "Computations Execution", false); tabComputationPanelItemConf.setIcon(DataMinerManager.resources .folderExplore()); computationExecutionPanel = new ComputationExecutionPanel(); diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/rpc/DataMinerPortletService.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/rpc/DataMinerPortletService.java index 9c8b88b..d1a1241 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/rpc/DataMinerPortletService.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/rpc/DataMinerPortletService.java @@ -5,10 +5,10 @@ import java.util.List; import org.gcube.portlets.user.dataminermanager.client.bean.ComputationStatus; import org.gcube.portlets.user.dataminermanager.client.bean.Operator; import org.gcube.portlets.user.dataminermanager.client.bean.OperatorsClassification; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationData; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.data.OutputData; import org.gcube.portlets.user.dataminermanager.shared.data.TableItemSimple; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException; import org.gcube.portlets.user.dataminermanager.shared.parameters.Parameter; import org.gcube.portlets.user.dataminermanager.shared.session.UserInfo; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/rpc/DataMinerPortletServiceAsync.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/rpc/DataMinerPortletServiceAsync.java index f404f8a..fce0c05 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/rpc/DataMinerPortletServiceAsync.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/rpc/DataMinerPortletServiceAsync.java @@ -5,10 +5,10 @@ import java.util.List; import org.gcube.portlets.user.dataminermanager.client.bean.ComputationStatus; import org.gcube.portlets.user.dataminermanager.client.bean.Operator; import org.gcube.portlets.user.dataminermanager.client.bean.OperatorsClassification; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationData; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.data.OutputData; import org.gcube.portlets.user.dataminermanager.shared.data.TableItemSimple; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.parameters.Parameter; import org.gcube.portlets.user.dataminermanager.shared.session.UserInfo; import org.gcube.portlets.user.dataminermanager.shared.workspace.DataMinerWorkArea; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/FileViewer.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/FileViewer.java new file mode 100644 index 0000000..ea75970 --- /dev/null +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/FileViewer.java @@ -0,0 +1,67 @@ +package org.gcube.portlets.user.dataminermanager.client.widgets; + +import org.gcube.portlets.user.dataminermanager.client.DataMinerManager; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; +import org.gcube.portlets.user.dataminermanager.shared.data.output.FileResource; + +import com.google.gwt.safehtml.shared.SafeHtmlBuilder; +import com.sencha.gxt.core.client.util.Margins; +import com.sencha.gxt.widget.core.client.button.TextButton; +import com.sencha.gxt.widget.core.client.container.HtmlLayoutContainer; +import com.sencha.gxt.widget.core.client.container.SimpleContainer; +import com.sencha.gxt.widget.core.client.container.VerticalLayoutContainer; +import com.sencha.gxt.widget.core.client.container.VerticalLayoutContainer.VerticalLayoutData; +import com.sencha.gxt.widget.core.client.event.SelectEvent; + +/** + * + * @author Giancarlo Panichi + * email: g.panichi@isti.cnr.it + * + */ +public class FileViewer extends SimpleContainer { + + private FileResource fileResource; + + + /** + * @param mapImages + */ + public FileViewer(ComputationId computationId, + FileResource fileResource) { + super(); + this.fileResource = fileResource; + //this.computationId = computationId; + init(); + create(); + } + + private void init(){ + setHeight(56); + } + + private void create() { + VerticalLayoutContainer lc = new VerticalLayoutContainer(); + final String fileName = fileResource.getName(); + final String fileUrl = fileResource.getUrl(); + HtmlLayoutContainer fileNameHtml = new HtmlLayoutContainer( + "

" + + new SafeHtmlBuilder().appendEscaped(fileName) + .toSafeHtml().asString() + "

"); + lc.add(fileNameHtml, new VerticalLayoutData(-1, -1, new Margins(0))); + TextButton downloadBtn = new TextButton("Download File"); + downloadBtn.setIcon(DataMinerManager.resources.fileDownload()); + downloadBtn.addSelectHandler(new SelectEvent.SelectHandler() { + @Override + public void onSelect(SelectEvent event) { + com.google.gwt.user.client.Window.open(fileUrl, fileName, ""); + + } + }); + + lc.add(downloadBtn, new VerticalLayoutData(-1, -1, new Margins(0))); + add(lc); + } + + +} diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/ImagesViewer.java b/src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/ImageViewer.java similarity index 90% rename from src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/ImagesViewer.java rename to src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/ImageViewer.java index 69cadb1..de5582d 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/ImagesViewer.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/client/widgets/ImageViewer.java @@ -1,8 +1,8 @@ package org.gcube.portlets.user.dataminermanager.client.widgets; import org.gcube.portlets.user.dataminermanager.client.DataMinerManager; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; -import org.gcube.portlets.user.dataminermanager.shared.data.output.ImagesResource; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; +import org.gcube.portlets.user.dataminermanager.shared.data.output.ImageResource; import com.google.gwt.user.client.ui.Image; import com.sencha.gxt.core.client.util.Margins; @@ -19,28 +19,28 @@ import com.sencha.gxt.widget.core.client.event.SelectEvent; * email: g.panichi@isti.cnr.it * */ -public class ImagesViewer extends SimpleContainer { +public class ImageViewer extends SimpleContainer { protected static final String SAVE_OK_MESSAGE = "The images have been saved on the Workspace in the folder "; protected static final String SAVE_OK_TITLE = "Saving operation was successful"; protected static final String SAVE_FAIL_TITLE = "Error"; protected static final String SAVE_FAIL_MESSAGE = "Error in saving images."; - private ImagesResource imagesResource; + private ImageResource imagesResource; //private ComputationId computationId; /** * @param mapImages */ - public ImagesViewer(ComputationId computationId, - ImagesResource imagesResource) { + public ImageViewer(ComputationId computationId, + ImageResource imagesResource) { super(); this.imagesResource = imagesResource; //this.computationId = computationId; - init(); + create(); } - private void init() { + private void create() { VerticalLayoutContainer v = new VerticalLayoutContainer(); add(v); if (imagesResource == null || imagesResource.getLink() == null diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/server/DataMinerManagerServiceImpl.java b/src/main/java/org/gcube/portlets/user/dataminermanager/server/DataMinerManagerServiceImpl.java index 069b930..f23a575 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/server/DataMinerManagerServiceImpl.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/server/DataMinerManagerServiceImpl.java @@ -15,12 +15,11 @@ import org.gcube.portlets.user.dataminermanager.client.rpc.DataMinerPortletServi import org.gcube.portlets.user.dataminermanager.server.smservice.SClient; import org.gcube.portlets.user.dataminermanager.server.storage.StorageUtil; import org.gcube.portlets.user.dataminermanager.server.util.DataMinerWorkAreaManager; -import org.gcube.portlets.user.dataminermanager.server.util.SessionUtil; import org.gcube.portlets.user.dataminermanager.server.util.TableReader; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationData; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.data.OutputData; import org.gcube.portlets.user.dataminermanager.shared.data.TableItemSimple; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException; import org.gcube.portlets.user.dataminermanager.shared.parameters.Parameter; import org.gcube.portlets.user.dataminermanager.shared.session.UserInfo; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/server/util/SessionUtil.java b/src/main/java/org/gcube/portlets/user/dataminermanager/server/SessionUtil.java similarity index 84% rename from src/main/java/org/gcube/portlets/user/dataminermanager/server/util/SessionUtil.java rename to src/main/java/org/gcube/portlets/user/dataminermanager/server/SessionUtil.java index 16ed544..9ef09cf 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/server/util/SessionUtil.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/server/SessionUtil.java @@ -1,14 +1,13 @@ /** * */ -package org.gcube.portlets.user.dataminermanager.server.util; +package org.gcube.portlets.user.dataminermanager.server; import static org.gcube.common.authorization.client.Constants.authorizationService; import java.util.ArrayList; import java.util.List; -import javax.activation.DataSource; import javax.servlet.http.HttpSession; import org.apache.log4j.Logger; @@ -19,6 +18,7 @@ import org.gcube.portlets.user.dataminermanager.server.smservice.SClient; import org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPSBuilder; import org.gcube.portlets.user.dataminermanager.server.smservice.SClientBuilder; import org.gcube.portlets.user.dataminermanager.server.smservice.SClientDirector; +import org.gcube.portlets.user.dataminermanager.server.util.ServiceCredential; import org.gcube.portlets.user.dataminermanager.shared.Constants; import org.gcube.portlets.user.dataminermanager.shared.exception.ExpiredSessionServiceException; import org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException; @@ -32,13 +32,7 @@ import org.gcube.portlets.user.dataminermanager.shared.exception.ServiceExceptio public class SessionUtil { private static final Logger logger = Logger.getLogger(SessionUtil.class); - // private final static String hostUrl = - // "http://pc-angela.isti.cnr.it:9090"; - // private static URI host = URI.create(hostUrl); - // private final static String SCOPE = "/gcube"; - - public static final String DATASOURCE_ATTRIBUTE_NAME = "TDW.DATASOURCE"; - + public static ASLSession getASLSession(HttpSession httpSession) throws ServiceException { String username = (String) httpSession @@ -61,7 +55,7 @@ public class SessionUtil { httpSession.getId(), username); aslSession.setScope(scope); } else { - logger.info("no user found in session, use test user"); + logger.info("no user found in session!"); throw new ExpiredSessionServiceException("Session Expired!"); } @@ -96,12 +90,6 @@ public class SessionUtil { } - public static DataSource getDataSource(HttpSession httpSession) - throws ServiceException { - ASLSession session = getASLSession(httpSession); - return (DataSource) session.getAttribute(DATASOURCE_ATTRIBUTE_NAME); - } - public static SClient getSClient(HttpSession session, ASLSession aslSession) throws Exception { diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/server/news/OperatorsNewsProducer.java b/src/main/java/org/gcube/portlets/user/dataminermanager/server/news/OperatorsNewsProducer.java index 2433f06..ea1b6c8 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/server/news/OperatorsNewsProducer.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/server/news/OperatorsNewsProducer.java @@ -29,7 +29,7 @@ import org.gcube.informationsystem.publisher.ScopedPublisher; import org.gcube.portlets.user.dataminermanager.client.bean.Operator; import org.gcube.portlets.user.dataminermanager.client.bean.OperatorCategory; import org.gcube.portlets.user.dataminermanager.server.DescriptionRepository; -import org.gcube.portlets.user.dataminermanager.server.util.SessionUtil; +import org.gcube.portlets.user.dataminermanager.server.SessionUtil; import org.gcube.portlets.user.dataminermanager.shared.Constants; import org.gcube.resources.discovery.client.api.DiscoveryClient; import org.gcube.resources.discovery.client.queries.api.Query; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/SClient.java b/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/SClient.java index 8fc2448..5ae31cb 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/SClient.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/SClient.java @@ -6,9 +6,9 @@ import java.util.Map; import org.gcube.portlets.user.dataminermanager.client.bean.ComputationStatus; import org.gcube.portlets.user.dataminermanager.client.bean.Operator; import org.gcube.portlets.user.dataminermanager.client.bean.OperatorsClassification; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationData; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.data.OutputData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.parameters.Parameter; /** diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/SClient4WPS.java b/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/SClient4WPS.java index ea9ecd0..b3bb968 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/SClient4WPS.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/SClient4WPS.java @@ -40,14 +40,16 @@ import org.gcube.portlets.user.dataminermanager.server.smservice.wps.ProcessInfo import org.gcube.portlets.user.dataminermanager.server.smservice.wps.ResponseWPS; import org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession; import org.gcube.portlets.user.dataminermanager.server.smservice.wps.WPS2SM; +import org.gcube.portlets.user.dataminermanager.server.smservice.wps.computationsvalue.ComputationValueBuilder; import org.gcube.portlets.user.dataminermanager.server.storage.StorageUtil; import org.gcube.portlets.user.dataminermanager.server.util.ServiceCredential; import org.gcube.portlets.user.dataminermanager.shared.Constants; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationData; -import org.gcube.portlets.user.dataminermanager.shared.data.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.data.OutputData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationData; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationValue; import org.gcube.portlets.user.dataminermanager.shared.data.output.FileResource; -import org.gcube.portlets.user.dataminermanager.shared.data.output.ImagesResource; +import org.gcube.portlets.user.dataminermanager.shared.data.output.ImageResource; import org.gcube.portlets.user.dataminermanager.shared.data.output.MapResource; import org.gcube.portlets.user.dataminermanager.shared.data.output.ObjectResource; import org.gcube.portlets.user.dataminermanager.shared.data.output.Resource; @@ -1043,7 +1045,7 @@ public class SClient4WPS extends SClient { case "image/gif": case "image/jpeg": case "image/png": - resource = new ImagesResource(key, + resource = new ImageResource(key, responseWPS.getDescription(), responseWPS.getDescription(), responseWPS.getData(), @@ -1250,8 +1252,8 @@ public class SClient4WPS extends SClient { computationId.setOperatorId(operatorId); computationId.setOperatorName(operatorName); - LinkedHashMap inputParameters = new LinkedHashMap<>(); - LinkedHashMap outputParameters = new LinkedHashMap<>(); + LinkedHashMap inputValueParameters = new LinkedHashMap<>(); + LinkedHashMap outputValueParameters = new LinkedHashMap<>(); for (String key : computationProperties.keySet()) { if (key != null) { @@ -1260,7 +1262,7 @@ public class SClient4WPS extends SClient { String inputKey = key.substring(inputSeparatorIndex + 1); if (inputKey.compareToIgnoreCase("user.name") != 0 && inputKey.compareToIgnoreCase("scope") != 0) { - inputParameters.put(inputKey, + inputValueParameters.put(inputKey, computationProperties.get(key)); } @@ -1270,7 +1272,7 @@ public class SClient4WPS extends SClient { int outputSeparatorIndex = key.indexOf("_"); String outputKey = key .substring(outputSeparatorIndex + 1); - outputParameters.put(outputKey, + outputValueParameters.put(outputKey, computationProperties.get(key)); } @@ -1279,12 +1281,18 @@ public class SClient4WPS extends SClient { } } - + + ComputationValueBuilder computationValueBuilder=new ComputationValueBuilder(inputValueParameters); + LinkedHashMap inputParameters = computationValueBuilder.create(); + computationValueBuilder=new ComputationValueBuilder(outputValueParameters); + LinkedHashMap outputParameters = computationValueBuilder.create(); + ComputationData computationData = new ComputationData(computationId, inputParameters, outputParameters, operatorDescritpion, startDate, endDate, status, executionType, vre); - + + logger.debug("ComputationData: "+computationData); return computationData; - } + } } diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/wps/computationsvalue/ComputationValueBuilder.java b/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/wps/computationsvalue/ComputationValueBuilder.java new file mode 100644 index 0000000..8c1c432 --- /dev/null +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/server/smservice/wps/computationsvalue/ComputationValueBuilder.java @@ -0,0 +1,143 @@ +package org.gcube.portlets.user.dataminermanager.server.smservice.wps.computationsvalue; + +import java.io.IOException; +import java.net.HttpURLConnection; +import java.net.URL; +import java.util.LinkedHashMap; +import java.util.List; +import java.util.Map; + +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationValue; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationValueFile; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationValueImage; +import org.slf4j.Logger; +import org.slf4j.LoggerFactory; + +public class ComputationValueBuilder { + private static Logger logger = LoggerFactory + .getLogger(ComputationValueBuilder.class); + + private LinkedHashMap valueParameters; + private LinkedHashMap computationsValueParameters; + + public ComputationValueBuilder(LinkedHashMap valueParameters) { + this.valueParameters = valueParameters; + } + + /** + * + */ + public LinkedHashMap create() { + computationsValueParameters = new LinkedHashMap(); + if (valueParameters != null && !valueParameters.isEmpty()) { + for (String key : valueParameters.keySet()) { + String value = valueParameters.get(key); + if (value != null && !value.isEmpty() + && value.startsWith("http")) { + ComputationValue computationValue = retrieveFileName(value); + computationsValueParameters.put(key, computationValue); + } else { + ComputationValue valueString = new ComputationValue(value); + computationsValueParameters.put(key, valueString); + } + } + } + logger.debug("CompuatationsValues: " + computationsValueParameters); + return computationsValueParameters; + + } + + private ComputationValue retrieveFileName(final String value) { + HttpURLConnection conn = null; + + try { + URL url = new URL(value); + int attempts = 0; + do { + conn = (HttpURLConnection) url.openConnection(); + conn.setConnectTimeout(30000); + conn.setReadTimeout(30000); + conn.setRequestMethod("HEAD"); + conn.setAllowUserInteraction(false); + conn.setDoInput(true); + conn.setDoOutput(true); + conn.connect(); + if (conn.getResponseCode() != 200) { + logger.error("Response Code: "+conn.getResponseCode()); + try { + Thread.sleep(5000); + } catch (InterruptedException e) { + + } + } + attempts++; + } while (attempts <= 5 || conn.getResponseCode() != 200); + + if (conn.getResponseCode() == 200) { + return extractFileName(conn, value); + } else { + return new ComputationValueFile(value, null, null); + } + + } catch (IOException e) { + logger.error(e.getLocalizedMessage()); + e.printStackTrace(); + return new ComputationValueFile(value, null, null); + } + } + + private ComputationValue extractFileName(HttpURLConnection conn, + String value) { + ComputationValue computationValue = null; + String fileName = null; + String mimeType = null; + + logger.debug("Connection-Header: " + conn.getHeaderFields()); + + String contentDisposition = conn.getHeaderField("Content-Disposition"); + if (contentDisposition == null) { + Map> headerFields = conn.getHeaderFields(); + boolean found = false; + for (String key : headerFields.keySet()) { + List headerField = headerFields.get(key); + for (String fieldValue : headerField) { + if (fieldValue.toLowerCase().contains("filename=")) { + contentDisposition = fieldValue; + found = true; + break; + } + } + if (found) { + break; + } + } + } + + logger.debug("Content-Disposition: " + contentDisposition); + // Content-Disposition="attachment; filename=abc.png" + if (contentDisposition != null && contentDisposition.indexOf("=") != -1) { + fileName = contentDisposition.split("=")[1]; // getting value + // after '=' + if (fileName != null && !fileName.isEmpty()) { + if (fileName.startsWith("\"")) { + fileName = fileName.substring(1); + } + if (fileName.endsWith("\"")) { + fileName = fileName.substring(0, fileName.length() - 1); + } + } + } else { // fall back to random generated file name? } + } + mimeType = conn.getContentType(); + if ((mimeType != null && mimeType.compareToIgnoreCase("image/png") == 0) + || fileName != null && fileName.endsWith(".png")) { + computationValue = new ComputationValueImage(value, fileName, + mimeType); + } else { + computationValue = new ComputationValueFile(value, fileName, + mimeType); + } + + return computationValue; + } +} diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/Constants.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/Constants.java index ddf319b..f5ff1dd 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/Constants.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/Constants.java @@ -12,7 +12,7 @@ public class Constants { public static final String DEFAULT_USER = "giancarlo.panichi"; //public static final String DEFAULT_USER = "statistical.manager@gmail.com"; public static final String DEFAULT_ROLE = "OrganizationMember"; - public final static String DEFAULT_SCOPE = "/gcube/devsec/devVRE"; + public static final String DEFAULT_SCOPE = "/gcube/devsec/devVRE"; // public final static String DEFAULT_USER = "test.user"; // public final static String DEFAULT_SCOPE = "/gcube/devNext"; // public final static String DEFAULT_SCOPE = "/gcube/devNext/NextNext"; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/OutputData.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/OutputData.java index e821b03..f83316d 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/OutputData.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/OutputData.java @@ -2,6 +2,7 @@ package org.gcube.portlets.user.dataminermanager.shared.data; import java.io.Serializable; +import org.gcube.portlets.user.dataminermanager.shared.data.computations.ComputationId; import org.gcube.portlets.user.dataminermanager.shared.data.output.Resource; /** diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/ComputationData.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationData.java similarity index 80% rename from src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/ComputationData.java rename to src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationData.java index 1befe77..40588bb 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/ComputationData.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationData.java @@ -1,4 +1,4 @@ -package org.gcube.portlets.user.dataminermanager.shared.data; +package org.gcube.portlets.user.dataminermanager.shared.data.computations; import java.io.Serializable; import java.util.LinkedHashMap; @@ -13,8 +13,8 @@ public class ComputationData implements Serializable { private static final long serialVersionUID = -3039151542008171640L; private ComputationId computationId; - private LinkedHashMap inputParameters; - private LinkedHashMap outputParameters; + private LinkedHashMap inputParameters; + private LinkedHashMap outputParameters; private String operatorDescription; private String startDate; private String endDate; @@ -27,8 +27,8 @@ public class ComputationData implements Serializable { } public ComputationData(ComputationId computationId, - LinkedHashMap inputParameters, - LinkedHashMap outputParameters, + LinkedHashMap inputParameters, + LinkedHashMap outputParameters, String operatorDescription, String startDate, String endDate, String status, String executionType, String vre) { super(); @@ -51,20 +51,20 @@ public class ComputationData implements Serializable { this.computationId = computationId; } - public LinkedHashMap getInputParameters() { + public LinkedHashMap getInputParameters() { return inputParameters; } - public void setInputParameters(LinkedHashMap inputParameters) { + public void setInputParameters(LinkedHashMap inputParameters) { this.inputParameters = inputParameters; } - public LinkedHashMap getOutputParameters() { + public LinkedHashMap getOutputParameters() { return outputParameters; } public void setOutputParameters( - LinkedHashMap outputParameters) { + LinkedHashMap outputParameters) { this.outputParameters = outputParameters; } diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/ComputationId.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationId.java similarity index 94% rename from src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/ComputationId.java rename to src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationId.java index 329bc67..66d7d53 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/ComputationId.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationId.java @@ -1,4 +1,4 @@ -package org.gcube.portlets.user.dataminermanager.shared.data; +package org.gcube.portlets.user.dataminermanager.shared.data.computations; import java.io.Serializable; diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValue.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValue.java new file mode 100644 index 0000000..b9adbf0 --- /dev/null +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValue.java @@ -0,0 +1,56 @@ +package org.gcube.portlets.user.dataminermanager.shared.data.computations; + +import java.io.Serializable; + +/** + * + * @author Giancarlo Panichi email: g.panichi@isti.cnr.it + * + */ +public class ComputationValue implements Serializable { + + private static final long serialVersionUID = -2047623108851748745L; + protected ComputationValueType type; + protected String value; + + public ComputationValue() { + super(); + } + + + public ComputationValue(String value) { + super(); + this.type = ComputationValueType.String; + this.value = value; + } + + + public ComputationValue(ComputationValueType type, String value) { + super(); + this.type = type; + this.value = value; + } + + public ComputationValueType getType() { + return type; + } + + public void setType(ComputationValueType type) { + this.type = type; + } + + public String getValue() { + return value; + } + + public void setValue(String value) { + this.value = value; + } + + @Override + public String toString() { + return "ComputationValue [type=" + type + ", value=" + value + "]"; + } + +} diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueFile.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueFile.java new file mode 100644 index 0000000..f2d7415 --- /dev/null +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueFile.java @@ -0,0 +1,49 @@ +package org.gcube.portlets.user.dataminermanager.shared.data.computations; + +/** + * + * @author Giancarlo Panichi email: g.panichi@isti.cnr.it + * + */ +public class ComputationValueFile extends ComputationValue { + private static final long serialVersionUID = -5845606225432949795L; + + private String fileName; + private String mimeType; + + public ComputationValueFile() { + super(); + } + + public ComputationValueFile(String url, String fileName, String mimeType) { + super(ComputationValueType.File, url); + this.fileName = fileName; + this.mimeType = mimeType; + } + + public String getFileName() { + return fileName; + } + + public void setFileName(String fileName) { + this.fileName = fileName; + } + + public String getMimeType() { + return mimeType; + } + + public void setMimeType(String mimeType) { + this.mimeType = mimeType; + } + + @Override + public String toString() { + return "ComputationValueFile [fileName=" + fileName + ", mimeType=" + + mimeType + ", type=" + type + ", value=" + value + "]"; + } + + + +} diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueImage.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueImage.java new file mode 100644 index 0000000..430b2f1 --- /dev/null +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueImage.java @@ -0,0 +1,47 @@ +package org.gcube.portlets.user.dataminermanager.shared.data.computations; + +/** + * + * @author Giancarlo Panichi email: g.panichi@isti.cnr.it + * + */ +public class ComputationValueImage extends ComputationValue { + private static final long serialVersionUID = -5845606225432949795L; + + private String fileName; + private String mimeType; + + public ComputationValueImage(){ + super(); + } + + public ComputationValueImage(String url, String fileName, String mimeType) { + super(ComputationValueType.Image, url); + this.fileName = fileName; + this.mimeType = mimeType; + } + + public String getFileName() { + return fileName; + } + + public void setFileName(String fileName) { + this.fileName = fileName; + } + + public String getMimeType() { + return mimeType; + } + + public void setMimeType(String mimeType) { + this.mimeType = mimeType; + } + + @Override + public String toString() { + return "ComputationValueImage [fileName=" + fileName + ", mimeType=" + + mimeType + "]"; + } + +} diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueType.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueType.java new file mode 100644 index 0000000..f1517e7 --- /dev/null +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/computations/ComputationValueType.java @@ -0,0 +1,11 @@ +package org.gcube.portlets.user.dataminermanager.shared.data.computations; + +/** + * + * @author Giancarlo Panichi + * email: g.panichi@isti.cnr.it + * + */ +public enum ComputationValueType { + File, Image, String; +} diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/ImagesResource.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/ImageResource.java similarity index 80% rename from src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/ImagesResource.java rename to src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/ImageResource.java index aeac780..c17c228 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/ImagesResource.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/ImageResource.java @@ -11,7 +11,7 @@ import java.io.Serializable; * email: g.panichi@isti.cnr.it * */ -public class ImagesResource extends Resource implements Serializable { +public class ImageResource extends Resource implements Serializable { /** * @@ -23,9 +23,9 @@ public class ImagesResource extends Resource implements Serializable { /** * */ - public ImagesResource() { + public ImageResource() { super(); - this.setResourceType(ResourceType.IMAGES); + this.setResourceType(ResourceType.IMAGE); } /** @@ -35,9 +35,9 @@ public class ImagesResource extends Resource implements Serializable { * @param description * @param link */ - public ImagesResource(String resourceId, String name, String description, + public ImageResource(String resourceId, String name, String description, String link, String mimeType) { - super(resourceId, name, description, ResourceType.IMAGES); + super(resourceId, name, description, ResourceType.IMAGE); this.link = link; this.mimeType = mimeType; } diff --git a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/Resource.java b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/Resource.java index eee983c..7c0aef6 100644 --- a/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/Resource.java +++ b/src/main/java/org/gcube/portlets/user/dataminermanager/shared/data/output/Resource.java @@ -19,7 +19,7 @@ public class Resource implements Serializable { private static final long serialVersionUID = 1417885805472591661L; public enum ResourceType { - OBJECT, FILE, TABULAR, MAP, IMAGES, ERROR + OBJECT, FILE, TABULAR, MAP, IMAGE, ERROR }; private String resourceId, name, description; @@ -125,7 +125,7 @@ public class Resource implements Serializable { } public boolean isImages() { - return this.resourceType == ResourceType.IMAGES; + return this.resourceType == ResourceType.IMAGE; } public boolean isError() { diff --git a/src/main/resources/org/gcube/portlets/user/dataminermanager/dataminermanager.gwt.xml b/src/main/resources/org/gcube/portlets/user/dataminermanager/dataminermanager.gwt.xml index ba12527..bb75e47 100644 --- a/src/main/resources/org/gcube/portlets/user/dataminermanager/dataminermanager.gwt.xml +++ b/src/main/resources/org/gcube/portlets/user/dataminermanager/dataminermanager.gwt.xml @@ -40,19 +40,20 @@ - + + - + diff --git a/test.log.1 b/test.log.1 deleted file mode 100644 index 21a8232..0000000 --- a/test.log.1 +++ /dev/null @@ -1,317663 +0,0 @@ -2016-05-03 10:14:53 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:14:53 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:14:53 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:14:54 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:14:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 66 msc 0 sec -2016-05-03 10:14:54 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:255172}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1865929}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=5644212, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:14:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1655745, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:54 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:14:54 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2137693}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=974427, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1551477}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1564934, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1865930}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1865930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:14:54 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:14:54 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:14:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:14:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:14:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:14:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:54 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:14:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:14:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:54 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:14:54 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:14:54 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:14:54 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:14:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:14:54 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:14:54 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:14:54 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:14:54 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:14:54 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:14:54 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:14:54 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:14:54 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:14:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:14:54 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:14:54 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:14:54 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:14:54 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:14:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:14:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7e38b5a6, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@1b826b53, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@f542441, socketFactory=javax.net.DefaultSocketFactory@5ec70774, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:14:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:14:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1865931}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1365240, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:14:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:255173}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2166491, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2137694}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1231892, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1551478}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1354530, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:14:54 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1865932}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG command:56 - Command execution completed -2016-05-03 10:14:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1865932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:14:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:14:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:14:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:54 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:14:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:54 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:14:54 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:14:54 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:14:54 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:14:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 49 msc 0 sec -2016-05-03 10:14:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:14:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:14:55 DEBUG query:56 - Query completed -2016-05-03 10:14:55 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:14:55 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2137693} -2016-05-03 10:14:55 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:255172} -2016-05-03 10:14:55 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1551477} -2016-05-03 10:14:55 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1865930}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:14:55 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1865930} -2016-05-03 10:14:55 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1865929} -2016-05-03 10:14:55 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:14:55 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:14:55 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:14:55 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:14:55 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:14:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:14:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:14:55 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:14:55 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:14:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:14:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:55 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:14:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:55 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:14:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:55 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:14:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:14:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:14:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:14:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:55 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:14:55 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:14:55 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:14:55 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:14:56 DEBUG query:56 - Query completed -2016-05-03 10:14:56 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2137694} -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:255173} -2016-05-03 10:14:56 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1865932}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1551478} -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1865932} -2016-05-03 10:14:56 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1865931} -2016-05-03 10:14:56 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:14:56 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:14:56 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:14:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:56 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:14:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:14:56 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:14:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:56 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:14:56 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:14:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:14:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:14:56 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:14:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:14:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:14:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:14:56 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:14:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:14:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:14:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:14:56 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:14:56 DEBUG Operation:173 - get(String) - start -2016-05-03 10:14:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:14:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:14:56 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:14:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:14:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7e38b5a6, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@1b826b53, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@f542441, socketFactory=javax.net.DefaultSocketFactory@5ec70774, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:14:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:14:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:1865933}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:255174}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1513559, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:14:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1557855, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2137696}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=873245, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1551479}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1433704, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1865934}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:14:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:14:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:14:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG query:56 - Query completed -2016-05-03 10:14:56 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:14:56 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:14:56 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:14:56 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG update:56 - Update completed -2016-05-03 10:14:56 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1865934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG query:56 - Query completed -2016-05-03 10:14:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:56 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:14:56 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:14:56 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:14:56 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:14:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:14:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:14:56 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:14:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:14:56 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:14:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:14:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:14:56 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:14:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:14:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:14:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:14:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:14:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:14:56 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:14:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:14:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7e38b5a6, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@1b826b53, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@f542441, socketFactory=javax.net.DefaultSocketFactory@5ec70774, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:14:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:14:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:255175}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1514540, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:14:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2137697}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1194075, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1865935}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1922774, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1551480}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1355261, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:14:56 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1865936}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:14:56 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:14:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG command:56 - Command execution completed -2016-05-03 10:14:56 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:14:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1865936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:56 DEBUG query:56 - Query completed -2016-05-03 10:14:56 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2137697} -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:255175} -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1551480} -2016-05-03 10:14:56 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1865936}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1865936} -2016-05-03 10:14:56 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:14:56 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1865935} -2016-05-03 10:14:56 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:14:56 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:14:56 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:14:56 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:14:56 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:14:56 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:14:56 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:14:56 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:15:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:15:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:15:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:15:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:15:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:15:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:15:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:15:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:15:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:15:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:15:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:15:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:15:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:15:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:15:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:15:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:15:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:15:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:15:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:15:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:15:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:15:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:15:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:15:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:15:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:15:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:15:36 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:15:36 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:15:36 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:15:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:15:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:15:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:15:36 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:15:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:15:46 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:15:46 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:15:46 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:15:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:15:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:15:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:15:46 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:15:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:15:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:15:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:15:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:15:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:15:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:15:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:15:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:15:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:16:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:16:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:16:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:16:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:16:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:16:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:16:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:16:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:16:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:16:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:16:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:16:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:16:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:16:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:16:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:16:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=42.2 ms, state=CONNECTED}] -2016-05-03 10:16:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:16:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:16:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=42.2 ms, state=CONNECTED}] -2016-05-03 10:16:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=42.2 ms, state=CONNECTED}] -2016-05-03 10:16:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:16:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=42.2 ms, state=CONNECTED}] -2016-05-03 10:16:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:16:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=34.2 ms, state=CONNECTED}] -2016-05-03 10:16:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:16:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:16:36 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:16:36 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:16:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=34.2 ms, state=CONNECTED}] -2016-05-03 10:16:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=34.2 ms, state=CONNECTED}] -2016-05-03 10:16:36 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:16:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=34.2 ms, state=CONNECTED}] -2016-05-03 10:16:36 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:16:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=27.7 ms, state=CONNECTED}] -2016-05-03 10:16:46 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:16:46 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:16:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=27.7 ms, state=CONNECTED}] -2016-05-03 10:16:46 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:16:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=27.7 ms, state=CONNECTED}] -2016-05-03 10:16:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=12.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=27.7 ms, state=CONNECTED}] -2016-05-03 10:16:46 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:16:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=12.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=22.5 ms, state=CONNECTED}] -2016-05-03 10:16:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:16:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=12.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=22.5 ms, state=CONNECTED}] -2016-05-03 10:16:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:16:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=12.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=22.5 ms, state=CONNECTED}] -2016-05-03 10:16:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:16:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=10.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=22.5 ms, state=CONNECTED}] -2016-05-03 10:16:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:16:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=10.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.4 ms, state=CONNECTED}] -2016-05-03 10:17:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:17:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=10.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.4 ms, state=CONNECTED}] -2016-05-03 10:17:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:17:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=10.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.4 ms, state=CONNECTED}] -2016-05-03 10:17:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:17:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=11.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.4 ms, state=CONNECTED}] -2016-05-03 10:17:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:17:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=11.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=15.1 ms, state=CONNECTED}] -2016-05-03 10:17:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:17:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=11.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=15.1 ms, state=CONNECTED}] -2016-05-03 10:17:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:17:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=11.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=15.1 ms, state=CONNECTED}] -2016-05-03 10:17:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:17:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=9.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=15.1 ms, state=CONNECTED}] -2016-05-03 10:17:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:17:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=9.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=12.4 ms, state=CONNECTED}] -2016-05-03 10:17:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:17:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:17:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:17:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=9.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=12.4 ms, state=CONNECTED}] -2016-05-03 10:17:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:17:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=9.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=12.4 ms, state=CONNECTED}] -2016-05-03 10:17:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:17:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=8.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=12.4 ms, state=CONNECTED}] -2016-05-03 10:17:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:17:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=8.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=10.3 ms, state=CONNECTED}] -2016-05-03 10:17:36 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:17:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=8.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=10.3 ms, state=CONNECTED}] -2016-05-03 10:17:36 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:17:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=8.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=10.3 ms, state=CONNECTED}] -2016-05-03 10:17:36 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:17:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=10.3 ms, state=CONNECTED}] -2016-05-03 10:17:36 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:17:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.6 ms, state=CONNECTED}] -2016-05-03 10:17:46 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:17:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.6 ms, state=CONNECTED}] -2016-05-03 10:17:46 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:17:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.6 ms, state=CONNECTED}] -2016-05-03 10:17:46 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:17:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.6 ms, state=CONNECTED}] -2016-05-03 10:17:46 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:17:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.7 ms, state=CONNECTED}] -2016-05-03 10:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2137696} -2016-05-03 10:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:255174} -2016-05-03 10:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1551479} -2016-05-03 10:17:46 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1865934}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1865934} -2016-05-03 10:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:1865933} -2016-05-03 10:18:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:18:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:19:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:19:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:20:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:21:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:21:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:21:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:21:57 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:22:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:22:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:23:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:23:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:23:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:23:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:23:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:23:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:23:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:23:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:23:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:23:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:23:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:23:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:23:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:23:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:23:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:23:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:23:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:23:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:23:32 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:23:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:23:32 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:23:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:23:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:23:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:23:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:23:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:23:32 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:23:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:23:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:23:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:23:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:23:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:23:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:23:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:23:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:23:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:23:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:23:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:23:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:23:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:23:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:23:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:23:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:23:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:23:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:23:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:23:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:23:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:23:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:23:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:23:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 160 msc 0 sec -2016-05-03 10:23:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:23:36 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:23:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:23:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:23:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:23:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:23:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:23:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:23:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:23:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:23:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:23:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:23:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:23:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:23:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:23:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:23:36 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:23:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:23:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:23:36 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:23:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:23:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:23:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:23:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:23:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:23:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:23:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:23:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:23:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:23:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:23:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:23:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:23:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:23:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:23:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:23:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:23:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:23:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:23:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:23:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:23:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:23:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:23:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:23:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:23:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:23:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:23:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:23:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 10:23:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:23:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:23:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:24:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:24:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:25:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:25:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:26:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:26:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:27:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:27:27 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:28:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:28:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:29:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:29:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:30:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:30:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:31:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:31:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:32:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:32:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:32:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:32:57 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:33:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:33:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:34:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:35:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:35:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:36:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:36:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:37:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:37:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:38:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:39:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:39:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:40:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:40:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:42:15 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 10:42:15 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 10:42:15 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 10:42:15 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:42:15 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:42:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:42:15 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:42:15 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@32a07412 -2016-05-03 10:42:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:42:15 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:42:15 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:42:15 DEBUG TemplateModel:83 - 2016-05-03 10:42:15, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:42:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:42:15 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 10:42:17 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:42:17 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:42:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:42:17 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:42:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:17 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:42:17 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:42:17 DEBUG TemplateModel:83 - 2016-05-03 10:42:17, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:42:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:42:17 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:42:17 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 119 ms -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 10:42:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 10:42:17 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 10:42:17 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:42:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:42:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@13ea6a3e -2016-05-03 10:42:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@1b80606f -2016-05-03 10:42:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@2350bd77 -2016-05-03 10:42:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@347d2992 -2016-05-03 10:42:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 100 ms -2016-05-03 10:42:17 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 10:42:17 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 10:42:17 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 10:42:17 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 10:42:17 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 10:42:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:42:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 10:42:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 27 ms -2016-05-03 10:42:17 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 10:42:17 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:42:17 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 10:42:17 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:42:18 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:42:18 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:42:18 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:42:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:42:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:42:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:42:18 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 10:42:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:18 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 10:42:18 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 10:42:18 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 10:42:18 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 10:42:18 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 10:42:18 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 10:42:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 10:42:18 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:42:18 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 10:42:18 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 83 ms -2016-05-03 10:42:18 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 10:42:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:42:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:18 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 10:42:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:18 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 10:42:18 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:42:19 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:42:19 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 10:42:19 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:42:19 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:42:19 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:19 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:42:19 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 10:42:19 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:42:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 10:42:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:19 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:42:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 10:42:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:19 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:42:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 10:42:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:19 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:42:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 10:42:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:20 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:42:20 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:42:20 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:42:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:42:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:20 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 10:42:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:42:20 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:42:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:20 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 10:42:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:20 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 10:42:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 132 msc 0 sec -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:20 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 10:42:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:20 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 10:42:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:20 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:42:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:42:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:42:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 114 msc 0 sec -2016-05-03 10:42:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 33 ms -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 10:42:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:42:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 10:42:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 10:42:20 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 10:42:20 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 10:42:20 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 10:42:20 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 10:42:20 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 10:42:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:42:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:42:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 10:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:42:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 334 msc 0 sec -2016-05-03 10:42:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:42:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:42:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:42:25 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 10:42:25 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:42:25 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:42:26 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 10:42:26 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 10:42:26 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 10:42:26 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 10:42:26 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 10:42:26 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 10:42:26 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:42:26 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:42:26 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:42:26 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:42:26 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:42:26 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:42:26 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:42:26 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:42:26 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:42:26 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:42:26 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:42:26 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:42:26 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:42:26 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:42:26 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:42:26 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:42:26 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:42:26 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:42:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:42:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:42:26 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:42:26 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:42:26 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:42:26 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:42:26 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:42:26 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:42:26 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:42:26 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:42:26 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:42:26 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:42:26 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:42:26 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:42:26 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:42:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:42:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:26 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:42:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:26 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:42:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:42:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:42:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:42:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:42:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:42:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:42:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:26 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:42:26 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:42:26 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:42:26 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:42:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:42:26 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:42:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:42:26 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:42:26 INFO WorkspaceExplorerServiceImpl:142 - end time - 202 msc 0 sec -2016-05-03 10:42:26 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:42:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:42:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:42:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:42:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:42:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:42:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:42:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:42:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:42:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:42:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:42:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:42:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:42:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:42:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:42:34 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:42:34 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:42:34 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:42:34 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:42:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:42:34 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:42:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:42:34 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:42:34 INFO WorkspaceExplorerServiceImpl:142 - end time - 201 msc 0 sec -2016-05-03 10:42:34 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:43:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:43:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:43:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:43:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:43:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:43:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:43:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:43:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:43:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:43:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:43:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:43:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:43:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:43:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:43:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:43:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:43:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:43:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:43:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:43:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:43:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:43:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:43:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:43:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:43:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:43:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:43:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:43:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:43:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:43:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:43:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:43:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:43:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:43:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:43:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:43:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:43:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:43:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:43:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:43:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:43:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:43:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:43:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:43:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 164 msc 0 sec -2016-05-03 10:43:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:43:07 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:43:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:43:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:43:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:43:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:43:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:43:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:43:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:43:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:43:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:43:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:43:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:43:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:43:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:43:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:43:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:43:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:43:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:43:07 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:43:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:43:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:43:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:43:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:43:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:43:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:43:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:43:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:43:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:43:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:43:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:43:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:43:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:43:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:43:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:43:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:43:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:43:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:43:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:43:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:43:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:43:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:43:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:43:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:43:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:43:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:43:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:43:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:43:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 156 msc 0 sec -2016-05-03 10:43:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:43:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:43:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:44:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:44:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:45:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:45:00 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:45:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:45:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:46:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:46:50 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:47:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:47:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:09 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:48:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:48:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:48:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:48:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:48:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:48:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 10:48:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:11 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:48:11 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:48:11 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:48:11 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:48:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:11 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:48:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:11 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:48:11 INFO WorkspaceExplorerServiceImpl:142 - end time - 164 msc 0 sec -2016-05-03 10:48:11 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:48:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 171 msc 0 sec -2016-05-03 10:48:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:48:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:48:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 147 msc 0 sec -2016-05-03 10:48:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:13 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:48:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 136 msc 0 sec -2016-05-03 10:48:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:13 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:48:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:48:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:48:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-03 10:48:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:48:25 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:25 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:25 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:48:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:25 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:25 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:25 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:48:25 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:48:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:25 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:25 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:48:25 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:48:25 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:48:25 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:48:25 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:48:25 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:48:25 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:48:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:25 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:25 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:48:25 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:48:25 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:48:25 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:48:25 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:25 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:25 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:48:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:25 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6c62ff5d, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@514af691, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1081d349, socketFactory=javax.net.DefaultSocketFactory@3b566616, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:48:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:25 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:48:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:25 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:25 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:48:25 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:25 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:48:25 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:48:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 56 msc 0 sec -2016-05-03 10:48:25 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:48:25 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:48:25 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:48:25 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:255511}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1660220, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:25 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:48:25 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:25 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:25 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1551815}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1353389, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:25 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1866272}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1286472, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:25 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:25 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2138032}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=999698, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:25 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1866273}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1866273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG command:56 - Command execution completed -2016-05-03 10:48:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1866273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG command:56 - Command execution completed -2016-05-03 10:48:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1866273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG command:56 - Command execution completed -2016-05-03 10:48:25 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:48:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1866273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG command:56 - Command execution completed -2016-05-03 10:48:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1866273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG command:56 - Command execution completed -2016-05-03 10:48:25 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1866273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:48:26 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:26 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:48:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:26 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:26 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:26 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:26 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:48:26 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:48:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:26 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:26 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:48:26 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:48:26 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:48:26 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:48:26 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:48:26 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:48:26 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:48:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:26 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:26 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:48:26 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:48:26 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:48:26 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:48:26 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:26 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:26 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:26 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6c62ff5d, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@514af691, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1081d349, socketFactory=javax.net.DefaultSocketFactory@3b566616, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:48:26 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:48:26 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:48:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:48:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:26 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:26 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:26 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:255512}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1866274}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1617427, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:26 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:48:26 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:26 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=3380499, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:26 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:26 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2138033}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=992690, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:26 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:48:26 DEBUG query:56 - Query completed -2016-05-03 10:48:26 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:48:26 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2138032} -2016-05-03 10:48:26 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:255511} -2016-05-03 10:48:26 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1551815} -2016-05-03 10:48:26 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1866273}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:48:26 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1866273} -2016-05-03 10:48:26 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1551816}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1866272} -2016-05-03 10:48:26 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:48:26 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:48:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1509765, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 10:48:26 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:48:26 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:48:26 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:48:26 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1866275}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1866275}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG command:56 - Command execution completed -2016-05-03 10:48:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1866275}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG command:56 - Command execution completed -2016-05-03 10:48:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1866275}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG command:56 - Command execution completed -2016-05-03 10:48:26 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:48:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1866275}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 INFO WorkspaceExplorerServiceImpl:188 - end time - 44 msc 0 sec -2016-05-03 10:48:26 DEBUG command:56 - Command execution completed -2016-05-03 10:48:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1866275}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG command:56 - Command execution completed -2016-05-03 10:48:26 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1866275}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:26 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:48:26 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:48:26 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:48:26 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:48:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 10:48:27 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:48:27 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:48:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:27 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:48:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:27 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:48:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:48:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:27 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:48:27 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:48:27 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:48:27 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:48:27 DEBUG query:56 - Query completed -2016-05-03 10:48:27 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:48:27 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2138033} -2016-05-03 10:48:27 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:255512} -2016-05-03 10:48:27 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1866275}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:48:27 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1551816} -2016-05-03 10:48:27 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1866275} -2016-05-03 10:48:27 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:48:27 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:48:27 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:48:27 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:48:27 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1866274} -2016-05-03 10:48:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:27 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:48:27 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:48:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:27 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:48:27 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:48:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:28 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:28 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:48:28 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:48:28 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:48:28 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:48:28 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:48:28 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:48:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:28 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:28 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:48:28 DEBUG Operation:173 - get(String) - start -2016-05-03 10:48:28 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:48:28 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:48:28 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:48:28 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:48:28 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:28 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:28 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6c62ff5d, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@514af691, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1081d349, socketFactory=javax.net.DefaultSocketFactory@3b566616, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:48:28 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:48:28 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:255513}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1247514, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:28 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:48:28 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:28 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2138034}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=878712, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1866276}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1452941, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:28 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1551818}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1357905, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1866277}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:48:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:48:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:48:28 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG query:56 - Query completed -2016-05-03 10:48:28 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:48:28 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:48:28 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:48:28 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG update:56 - Update completed -2016-05-03 10:48:28 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1866277}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG query:56 - Query completed -2016-05-03 10:48:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:28 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:48:28 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:48:28 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:48:28 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:48:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:28 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:28 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:48:28 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:48:28 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:48:28 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:48:28 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:48:28 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:48:28 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:48:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:28 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:28 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:48:28 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:48:28 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:48:28 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:48:28 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:28 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:28 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6c62ff5d, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@514af691, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1081d349, socketFactory=javax.net.DefaultSocketFactory@3b566616, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:48:28 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:48:28 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1866278}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1140308, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:28 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:48:28 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:28 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:28 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:255514}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1842245, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2138035}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=924928, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1551819}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1373294, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:28 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1866279}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1866279}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1866279}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1866279}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:48:28 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:48:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1866279}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1866279}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG command:56 - Command execution completed -2016-05-03 10:48:28 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:48:28 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1866279}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG query:56 - Query completed -2016-05-03 10:48:28 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:48:28 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2138035} -2016-05-03 10:48:28 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:255514} -2016-05-03 10:48:28 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1866279}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:48:28 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1866279} -2016-05-03 10:48:28 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1551819} -2016-05-03 10:48:28 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:48:28 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1866278} -2016-05-03 10:48:28 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:48:28 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:48:28 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:48:28 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:48:28 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:48:28 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:48:28 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:48:28 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:35 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:35 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:35 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:35 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:48:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:35 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:35 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:35 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:48:35 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:48:35 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:35 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:35 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:48:35 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:48:35 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:48:35 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:48:35 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:48:35 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:48:35 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:48:35 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:35 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:35 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:48:35 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:48:35 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:48:35 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:48:35 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:35 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:35 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:35 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6c62ff5d, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@514af691, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1081d349, socketFactory=javax.net.DefaultSocketFactory@3b566616, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:48:35 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:48:35 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:48:35 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1866280}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:255518}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1588359, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:35 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:48:35 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:35 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1232137, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:35 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:35 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2138037}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1164146, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:35 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1551821}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1431553, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:35 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1866281}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1866281}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG command:56 - Command execution completed -2016-05-03 10:48:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1866281}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:35 DEBUG command:56 - Command execution completed -2016-05-03 10:48:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1866281}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG command:56 - Command execution completed -2016-05-03 10:48:35 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:48:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1866281}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG command:56 - Command execution completed -2016-05-03 10:48:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1866281}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 DEBUG command:56 - Command execution completed -2016-05-03 10:48:35 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1866281}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:35 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:35 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:35 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:48:35 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2138034} -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:255513} -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1551818} -2016-05-03 10:48:35 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1866277}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1866277} -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1866276} -2016-05-03 10:48:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-03 10:48:35 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:48:35 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:48:35 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:48:35 DEBUG query:56 - Query completed -2016-05-03 10:48:35 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2138037} -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:255518} -2016-05-03 10:48:35 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1866281}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1866281} -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1551821} -2016-05-03 10:48:35 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:48:35 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:48:35 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:48:35 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:48:35 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1866280} -2016-05-03 10:48:36 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:36 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:48:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:48:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:36 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:36 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:48:36 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:48:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:36 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:36 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:48:36 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:48:36 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:48:36 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:48:36 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:48:36 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:48:36 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:48:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:36 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:36 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:48:36 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:48:36 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:48:36 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:48:36 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:36 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:36 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:36 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6c62ff5d, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@514af691, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1081d349, socketFactory=javax.net.DefaultSocketFactory@3b566616, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:48:36 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:48:36 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:48:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:36 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:48:37 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:48:37 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:48:37 INFO WorkspaceExplorerServiceImpl:188 - end time - 39 msc 0 sec -2016-05-03 10:48:37 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:48:37 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:48:37 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:48:37 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:48:37 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:48:37 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:48:37 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:48:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:37 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:37 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:48:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:37 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:48:37 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:48:37 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:48:37 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:48:37 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:255519}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:37 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1866282}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1634437, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1762304, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:48:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:37 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:37 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2138039}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=814822, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:37 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1551822}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1788437, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:48:38 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1866283}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1866283}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1866283}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1866283}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:48:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1866283}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1866283}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1866283}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:48:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:48:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:48:38 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-03 10:48:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:38 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:48:38 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:48:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:38 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:38 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 10:48:38 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:48:38 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:48:38 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:48:38 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:48:38 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:48:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:38 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:38 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:48:38 DEBUG Operation:173 - get(String) - start -2016-05-03 10:48:38 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:48:38 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:48:38 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:48:38 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:48:38 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:38 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:38 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:38 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6c62ff5d, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@514af691, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1081d349, socketFactory=javax.net.DefaultSocketFactory@3b566616, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:48:38 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:48:38 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:48:38 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1866284}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1358566, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:38 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:48:38 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:38 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:255520}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=937734, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:38 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2138040}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=813627, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:38 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1551823}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1407689, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:38 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1866285}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:48:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:48:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG command:56 - Command execution completed -2016-05-03 10:48:38 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:48:38 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG query:56 - Query completed -2016-05-03 10:48:38 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 10:48:38 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:48:38 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:48:38 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG update:56 - Update completed -2016-05-03 10:48:38 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1866285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:38 DEBUG query:56 - Query completed -2016-05-03 10:48:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:48:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:48:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:48:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:48:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:48:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:48:39 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:48:39 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-03 10:48:39 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:48:39 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:48:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:39 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:39 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 10:48:39 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:48:39 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:48:39 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:48:39 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:48:39 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:48:39 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:48:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:48:39 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:48:39 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:48:39 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:48:39 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:48:39 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:48:39 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:39 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:39 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:39 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6c62ff5d, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@514af691, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1081d349, socketFactory=javax.net.DefaultSocketFactory@3b566616, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:48:39 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:48:39 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:48:39 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:255521}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1283443, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:39 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:48:39 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:39 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:48:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:39 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2138041}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=881637, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:39 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1866286}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1455344, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:39 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:48:39 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1551824}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1943646, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:48:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 10:48:39 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1866287}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1866287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG command:56 - Command execution completed -2016-05-03 10:48:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1866287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG command:56 - Command execution completed -2016-05-03 10:48:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1866287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG query:56 - Query completed -2016-05-03 10:48:39 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2138039} -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:255519} -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1551822} -2016-05-03 10:48:39 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1866283}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1866283} -2016-05-03 10:48:39 DEBUG command:56 - Command execution completed -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1866282} -2016-05-03 10:48:39 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:48:39 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:48:39 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:48:39 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:48:39 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:48:39 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:48:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1866287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG command:56 - Command execution completed -2016-05-03 10:48:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1866287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG command:56 - Command execution completed -2016-05-03 10:48:39 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:48:39 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1866287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:39 DEBUG query:56 - Query completed -2016-05-03 10:48:39 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:255521} -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1551824} -2016-05-03 10:48:39 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1866287}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2138041} -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1866287} -2016-05-03 10:48:39 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:48:39 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1866286} -2016-05-03 10:48:39 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:48:39 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:48:39 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:48:39 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:48:39 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:48:39 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:48:39 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 10:48:39 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 10:48:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:40 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:48:47 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:48:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:48:47 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=h1|h2, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-03 10:48:47 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:48:47 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:48:47 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:48:47 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:48:47 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:48:47 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:48:47 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:48:47 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:48:47 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:48:47 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:48:47 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:48:47 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:48:47 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:48:47 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:48:47 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:48:47 DEBUG SClient4WPS:687 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:48:47 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:48:47 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:48:47 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:48:47 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:48:47 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:48:47 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:48:47 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:48:47 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:48:47 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:48:47 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:48:47 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:48:47 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:48:47 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:48:47 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:48:47 DEBUG SClient4WPS:687 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:48:47 DEBUG SClient4WPS:695 - UserInputs= key:HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 10:48:47 DEBUG SClient4WPS:695 - UserInputs= key:HCAF_Table_Names, value=h1|h2 -2016-05-03 10:48:47 DEBUG SClient4WPS:754 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 10:48:47 DEBUG SClient4WPS:737 - Configuring Literal: HCAF_Table_Names to: h1|h2 -2016-05-03 10:48:47 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:48:48 DEBUG SClient4WPS:385 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1|h2 - - - - - - - non_deterministic_output - - - - -2016-05-03 10:48:48 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 10:48:48 DEBUG SClient4WPS:404 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=d1c475a4-24f3-4fd0-90d6-00c4ec2e27d9 -2016-05-03 10:48:48 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:48:48 DEBUG SClient4WPS:774 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=d1c475a4-24f3-4fd0-90d6-00c4ec2e27d9 -2016-05-03 10:48:48 DEBUG SClient4WPS:700 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=d1c475a4-24f3-4fd0-90d6-00c4ec2e27d9 -2016-05-03 10:48:48 DEBUG SClient4WPS:711 - ComputationId: ComputationId [id=d1c475a4-24f3-4fd0-90d6-00c4ec2e27d9, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=d1c475a4-24f3-4fd0-90d6-00c4ec2e27d9] -2016-05-03 10:48:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:48:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:48:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:48:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:48:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:48:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:48:48 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:255520} -2016-05-03 10:48:48 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1866285}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:48:48 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1866285} -2016-05-03 10:48:48 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2138040} -2016-05-03 10:48:48 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1551823} -2016-05-03 10:48:48 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1866284} -2016-05-03 10:48:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:48:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:48:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:48:59 DEBUG SClient4WPS:790 - GetComputationStatus(): ComputationId=ComputationId [id=d1c475a4-24f3-4fd0-90d6-00c4ec2e27d9, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=d1c475a4-24f3-4fd0-90d6-00c4ec2e27d9] -2016-05-03 10:48:59 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 10:48:59 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 10:48:59 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=d1c475a4-24f3-4fd0-90d6-00c4ec2e27d9 -2016-05-03 10:48:59 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 10:48:59 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 10:48:59 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 10:48:59 DEBUG SClient4WPS:806 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - - org.n52.wps.server.ExceptionReport: Error occured while parsing XML - - - - - -2016-05-03 10:48:59 DEBUG SClient4WPS:851 - WPS FAILURE: - - org.n52.wps.server.ExceptionReport: Error occured while parsing XML - - OR PAUSED: null -2016-05-03 10:48:59 DEBUG SClient4WPS:889 - ComputationStatus: ComputationStatus [percentage=100.0, status=FAILED, endDate=null, message=null, errResource=null] -2016-05-03 10:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:49:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:50:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:50:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:51:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:51:25 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:52:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:52:20 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:53:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:53:15 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:54:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:54:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:55:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:55:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:56:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:56:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:56:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:56:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:57:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:57:50 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:59:17 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 10:59:17 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 10:59:17 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 10:59:17 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:59:17 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:59:17 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:59:17 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:59:17 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@491f9d86 -2016-05-03 10:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:59:17 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:59:17 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:59:17 DEBUG TemplateModel:83 - 2016-05-03 10:59:17, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:59:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:59:17 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 10:59:19 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:59:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:59:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:59:19 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:59:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:59:19 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:59:19 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:59:19 DEBUG TemplateModel:83 - 2016-05-03 10:59:19, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:59:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:59:19 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:59:19 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 114 ms -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 10:59:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 10:59:19 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 10:59:19 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:59:19 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:59:20 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@74ad46ce -2016-05-03 10:59:20 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@58401db8 -2016-05-03 10:59:20 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@a54749c -2016-05-03 10:59:20 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2ed143e3 -2016-05-03 10:59:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 117 ms -2016-05-03 10:59:20 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 10:59:20 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 10:59:20 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 10:59:20 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 10:59:20 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 10:59:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:59:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:59:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 10:59:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 22 ms -2016-05-03 10:59:20 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 10:59:20 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:59:20 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 10:59:20 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:59:20 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:59:20 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:59:20 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:59:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:59:20 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 10:59:20 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:59:20 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 10:59:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:20 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 10:59:20 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 10:59:20 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 10:59:20 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 10:59:20 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 10:59:20 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 10:59:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 10:59:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:59:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 10:59:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-03 10:59:20 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 10:59:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 10:59:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:20 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 10:59:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:20 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 10:59:21 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:59:21 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:59:21 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 10:59:21 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:59:21 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:59:21 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 10:59:21 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 10:59:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:21 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 10:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:21 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:21 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 10:59:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 10:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 10:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 10:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:22 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:59:22 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:59:22 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:59:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:59:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:22 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 10:59:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:59:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:59:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:23 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 10:59:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:23 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 10:59:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 139 msc 0 sec -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 10:59:23 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 10:59:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:23 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 10:59:23 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 10:59:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:23 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:59:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:59:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:59:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 118 msc 0 sec -2016-05-03 10:59:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:59:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:59:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 10:59:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 10:59:23 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 10:59:23 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 10:59:23 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 10:59:23 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:59:23 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:59:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:59:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:59:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:59:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:59:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 335 msc 0 sec -2016-05-03 10:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:59:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:59:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:59:28 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 10:59:28 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:59:28 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:59:29 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 10:59:29 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 10:59:29 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 10:59:29 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 10:59:29 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 10:59:29 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 10:59:29 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:59:29 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:59:29 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:59:29 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:59:29 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:59:29 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:59:29 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:59:29 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:59:29 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:59:29 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:59:29 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:59:29 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:59:29 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:59:29 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:59:29 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:59:29 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:59:29 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:59:29 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:59:29 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:59:29 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:59:29 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:59:29 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:59:29 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:59:29 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:59:29 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:59:29 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:59:29 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:59:29 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:59:29 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:59:29 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:59:29 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:59:29 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:59:29 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 10:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 10:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:29 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 10:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-03 10:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:59:29 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:59:29 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:59:29 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:59:29 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:59:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:59:29 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:59:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:59:29 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:59:29 INFO WorkspaceExplorerServiceImpl:142 - end time - 184 msc 0 sec -2016-05-03 10:59:29 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:00:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:01:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:01:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:02:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:02:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:02:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:02:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:03:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:03:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:04:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:04:47 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:05:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:05:42 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:06:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:06:37 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:07:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 11:07:32 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-03 11:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:08:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:09:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:09:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:10:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:10:17 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:11:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:11:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:12:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 11:12:07 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-03 11:13:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:13:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:13:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:13:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:15:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:15:47 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:16:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:16:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:17:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:17:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:18:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 11:18:32 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-03 11:19:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:19:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:20:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:20:22 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:21:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:21:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:21:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:21:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:21:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:21:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:21:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 11:21:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:21:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:21:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:21:20 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:21:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:21:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:21:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:21:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:21:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:21:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:21:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:21:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:21:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:21:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:21:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:21:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 251 msc 0 sec -2016-05-03 11:21:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 11:21:21 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 11:21:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:21:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:21:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:21:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 11:21:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:21 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-03 11:21:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:21:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:21:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:21:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:21:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:21:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:21:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:21:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:21:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:21:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:21:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:21:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:21:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:21:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:21:21 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:21:21 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:21:21 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:21:21 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:21:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:21:21 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:21:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:21:21 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:21:21 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 11:21:21 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:22:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:23:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:23:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:24:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:24:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:24:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:24:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:25:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:25:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:26:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-03 11:26:47 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-03 11:27:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:27:42 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:28:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:28:37 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:29:32 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:29:32 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:29:32 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:29:32 WARN SessionCheckerServiceImpl:80 - Scope is null at Tue May 03 11:29:32 CEST 2016 -2016-05-03 11:29:32 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:38:42 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 11:38:42 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 11:38:42 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 11:38:42 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:38:42 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:38:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:38:42 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:38:42 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@2e5ca4de -2016-05-03 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:38:42 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:38:42 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:38:42 DEBUG TemplateModel:83 - 2016-05-03 11:38:42, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:38:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:38:42 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 11:38:44 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:38:44 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:38:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:38:44 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:38:44 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:38:44 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:38:44 DEBUG TemplateModel:83 - 2016-05-03 11:38:44, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:38:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:38:44 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:38:44 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 123 ms -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 11:38:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 11:38:44 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 11:38:44 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:38:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:38:44 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@51598f1d -2016-05-03 11:38:44 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@53ca0041 -2016-05-03 11:38:44 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@6831add -2016-05-03 11:38:44 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@7884c3a4 -2016-05-03 11:38:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-05-03 11:38:45 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 11:38:45 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 11:38:45 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 11:38:45 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 11:38:45 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 11:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:38:45 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:38:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 11:38:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-03 11:38:45 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 11:38:45 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:38:45 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 11:38:45 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:38:45 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:38:45 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:38:45 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:38:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:38:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:38:45 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 11:38:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:45 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 11:38:45 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 11:38:45 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 11:38:45 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 11:38:45 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 11:38:45 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 11:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:38:45 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:38:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 11:38:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-03 11:38:45 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 11:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:38:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:45 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 11:38:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:45 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 11:38:45 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:38:45 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 11:38:46 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:38:46 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:38:46 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 11:38:46 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:38:46 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:38:46 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:46 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 11:38:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 11:38:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:46 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:38:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 11:38:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:46 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:38:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 11:38:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:46 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:38:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 11:38:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:47 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:38:47 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:38:47 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:38:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:38:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:38:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:38:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:47 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 11:38:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:38:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:38:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:48 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 11:38:48 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 11:38:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:48 INFO WorkspaceExplorerServiceImpl:188 - end time - 118 msc 0 sec -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:38:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:38:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:48 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 11:38:48 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 11:38:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:38:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:38:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:38:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 11:38:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:38:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 11:38:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 11:38:48 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 11:38:48 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 11:38:48 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 11:38:48 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 11:38:48 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 11:38:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:38:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:38:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 11:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:38:48 INFO WorkspaceExplorerServiceImpl:188 - end time - 318 msc 0 sec -2016-05-03 11:38:49 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 11:38:49 INFO WorkspaceExplorerServiceImpl:188 - end time - 1117 msc 1 sec -2016-05-03 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:38:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:38:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:38:51 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 11:38:51 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:38:51 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:38:52 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 11:38:52 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 11:38:52 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 11:38:52 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 11:38:52 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 11:38:52 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 11:38:52 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:38:52 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 11:38:52 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 11:38:52 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 11:38:52 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 11:38:52 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 11:38:52 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:38:52 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 11:38:52 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 11:38:52 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 11:38:52 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 11:38:52 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 11:38:52 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 11:38:52 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 11:38:52 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 11:38:52 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:38:52 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 11:38:52 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 11:38:52 DEBUG WPS2SM:92 - WPS type: -2016-05-03 11:38:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 11:38:52 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 11:38:52 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:38:52 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 11:38:52 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 11:38:52 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 11:38:52 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 11:38:52 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 11:38:52 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 11:38:52 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 11:38:52 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 11:38:52 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:38:52 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 11:38:52 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:38:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:38:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:52 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:38:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:38:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:38:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:38:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:38:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:38:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:38:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:38:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:38:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:38:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:38:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:38:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:38:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:38:52 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:38:52 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:38:52 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:38:52 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:38:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:38:52 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:38:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:38:52 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:38:52 INFO WorkspaceExplorerServiceImpl:142 - end time - 200 msc 0 sec -2016-05-03 11:38:52 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:39:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:39:37 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:40:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:40:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:41:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:41:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:42:26 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 11:42:26 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 11:42:26 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 11:42:26 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:42:26 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:42:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:42:26 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:42:26 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@2d3acd4d -2016-05-03 11:42:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:42:26 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:42:26 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:42:26 DEBUG TemplateModel:83 - 2016-05-03 11:42:26, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:42:26 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:42:26 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 11:42:28 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:42:28 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:42:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:42:28 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:42:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:42:28 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:42:28 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:42:28 DEBUG TemplateModel:83 - 2016-05-03 11:42:28, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:42:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:42:28 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:42:28 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 143 ms -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 11:42:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 11:42:28 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 11:42:28 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:42:28 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:42:28 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2a37f818 -2016-05-03 11:42:28 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@323b34b0 -2016-05-03 11:42:28 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@48550177 -2016-05-03 11:42:28 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@12ed2889 -2016-05-03 11:42:28 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 108 ms -2016-05-03 11:42:28 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 11:42:28 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 11:42:28 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 11:42:28 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 11:42:28 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 11:42:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:42:28 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:42:28 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 11:42:28 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 16 ms -2016-05-03 11:42:28 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 11:42:28 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:42:28 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 11:42:28 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:42:29 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:42:29 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:42:29 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:42:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:42:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:42:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:42:29 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 11:42:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:29 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 11:42:29 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 11:42:29 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 11:42:29 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 11:42:29 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 11:42:29 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 11:42:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 11:42:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:42:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 11:42:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-03 11:42:29 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 11:42:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:42:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:29 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 11:42:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:29 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 11:42:29 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:42:29 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:42:29 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 11:42:29 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:42:29 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 11:42:30 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:42:30 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:42:30 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:30 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 11:42:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 11:42:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:30 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:42:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 11:42:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:30 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:42:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 11:42:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:30 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:42:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 11:42:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:31 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:42:31 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:42:31 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:42:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:42:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:42:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:42:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:31 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 11:42:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:42:31 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:42:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:42:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:31 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 11:42:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:31 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 11:42:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:31 INFO WorkspaceExplorerServiceImpl:188 - end time - 122 msc 0 sec -2016-05-03 11:42:31 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 11:42:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:42:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:42:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:42:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:31 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 11:42:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:31 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 11:42:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 11:42:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:42:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:42:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:42:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-03 11:42:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 11:42:32 INFO WorkspaceExplorerServiceImpl:188 - end time - 122 msc 0 sec -2016-05-03 11:42:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:42:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 11:42:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 11:42:32 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 11:42:32 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 11:42:32 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 11:42:32 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 11:42:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 11:42:32 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 11:42:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 11:42:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:42:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:42:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-03 11:42:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 11:42:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 11:42:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 11:42:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:42:32 INFO WorkspaceExplorerServiceImpl:188 - end time - 327 msc 0 sec -2016-05-03 11:42:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:42:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:42:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:42:35 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 11:42:35 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:42:35 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:42:36 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 11:42:36 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 11:42:36 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 11:42:36 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 11:42:36 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 11:42:36 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 11:42:36 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:42:36 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 11:42:36 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 11:42:36 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 11:42:36 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 11:42:36 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 11:42:36 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:42:36 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 11:42:36 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 11:42:36 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 11:42:36 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 11:42:36 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 11:42:36 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 11:42:36 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 11:42:36 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 11:42:36 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:42:36 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 11:42:36 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 11:42:36 DEBUG WPS2SM:92 - WPS type: -2016-05-03 11:42:36 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 11:42:36 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 11:42:36 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:42:36 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 11:42:36 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 11:42:36 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 11:42:36 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 11:42:36 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 11:42:36 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 11:42:36 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 11:42:36 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 11:42:36 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:42:36 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 11:42:36 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:42:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:42:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:42:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:42:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:36 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:42:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:42:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:42:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:42:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:42:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:42:36 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:42:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:42:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:42:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:42:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:42:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:42:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:42:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 11:42:36 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 11:42:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:42:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:42:36 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:42:36 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:42:36 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:42:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:42:36 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:42:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:42:36 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:42:36 INFO WorkspaceExplorerServiceImpl:142 - end time - 203 msc 0 sec -2016-05-03 11:42:36 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:43:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:43:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:45:11 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 11:45:11 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 11:45:11 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 11:45:11 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:45:11 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:45:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:45:11 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:45:11 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@124473c4 -2016-05-03 11:45:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:45:11 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:45:11 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:45:11 DEBUG TemplateModel:83 - 2016-05-03 11:45:11, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:45:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:45:11 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 11:45:13 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:45:13 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:45:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:45:13 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:45:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:45:13 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:45:13 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:45:13 DEBUG TemplateModel:83 - 2016-05-03 11:45:13, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:45:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:45:13 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:45:13 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 130 ms -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 11:45:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 11:45:13 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 11:45:13 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:45:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:45:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@64358f1d -2016-05-03 11:45:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@196b2c4 -2016-05-03 11:45:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@44ff1df8 -2016-05-03 11:45:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@78917aa4 -2016-05-03 11:45:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-05-03 11:45:13 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 11:45:13 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 11:45:13 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 11:45:13 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 11:45:13 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 11:45:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:45:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:45:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 11:45:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-03 11:45:13 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 11:45:13 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:45:13 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 11:45:13 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:45:13 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:45:13 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:45:13 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:45:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:45:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:45:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:45:14 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 11:45:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:14 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 11:45:14 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 11:45:14 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 11:45:14 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 11:45:14 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 11:45:14 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 11:45:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 11:45:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:45:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 11:45:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 23 ms -2016-05-03 11:45:14 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 11:45:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:45:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:14 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 11:45:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:14 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 11:45:14 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:45:14 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:45:14 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 11:45:14 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:45:14 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:45:14 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 11:45:14 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 11:45:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:14 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:45:14 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 11:45:14 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 11:45:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 11:45:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:45:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 11:45:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:45:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 11:45:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:45:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 11:45:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:16 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:45:16 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:45:16 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:45:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:45:16 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:45:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:45:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:16 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 11:45:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:45:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:45:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:45:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:16 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 11:45:16 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 11:45:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 138 msc 0 sec -2016-05-03 11:45:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:45:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:45:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:45:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:16 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 11:45:16 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 11:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:17 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 11:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:45:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:45:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:45:17 INFO WorkspaceExplorerServiceImpl:188 - end time - 134 msc 0 sec -2016-05-03 11:45:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 11:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:45:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:45:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 11:45:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 22 ms -2016-05-03 11:45:17 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 11:45:17 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 11:45:17 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 11:45:17 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 11:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:45:17 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 11:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:45:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:45:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:45:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 11:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:45:17 INFO WorkspaceExplorerServiceImpl:188 - end time - 369 msc 0 sec -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:45:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:45:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:45:23 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 11:45:23 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:45:23 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:45:23 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 11:45:23 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 11:45:23 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 11:45:23 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 11:45:23 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 11:45:23 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 11:45:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:45:23 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 11:45:23 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 11:45:23 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 11:45:23 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 11:45:23 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 11:45:23 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:45:23 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 11:45:23 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 11:45:23 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 11:45:23 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 11:45:23 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 11:45:23 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 11:45:23 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 11:45:23 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 11:45:23 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:45:23 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 11:45:23 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 11:45:23 DEBUG WPS2SM:92 - WPS type: -2016-05-03 11:45:23 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 11:45:23 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 11:45:23 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:45:23 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 11:45:23 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 11:45:23 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 11:45:23 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 11:45:23 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 11:45:23 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 11:45:23 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 11:45:23 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 11:45:23 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:45:23 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 11:45:23 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:45:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:45:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:45:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:45:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:23 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:45:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:45:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:45:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:45:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:45:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:45:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:45:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:45:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:45:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:45:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:45:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:45:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:45:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:45:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:45:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:45:24 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:45:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:45:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:45:24 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:45:24 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:45:24 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:45:24 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:45:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:45:24 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:45:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:45:24 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:45:24 INFO WorkspaceExplorerServiceImpl:142 - end time - 205 msc 0 sec -2016-05-03 11:45:24 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:46:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:46:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:47:02 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 11:47:02 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 11:47:02 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 11:47:02 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:47:02 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:47:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:47:02 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:47:02 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6090bb0f -2016-05-03 11:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:47:02 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:47:02 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:47:02 DEBUG TemplateModel:83 - 2016-05-03 11:47:02, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:47:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:47:02 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 11:47:03 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:47:03 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:47:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:47:03 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:47:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:47:03 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:47:03 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:47:03 DEBUG TemplateModel:83 - 2016-05-03 11:47:03, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:47:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:47:03 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:47:04 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 125 ms -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 11:47:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 11:47:04 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 11:47:04 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:47:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:47:04 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@228b0809 -2016-05-03 11:47:04 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4ff1379 -2016-05-03 11:47:04 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@3a364a7b -2016-05-03 11:47:04 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@754c0d46 -2016-05-03 11:47:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 90 ms -2016-05-03 11:47:04 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 11:47:04 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 11:47:04 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 11:47:04 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 11:47:04 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 11:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:47:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:47:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 11:47:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-03 11:47:04 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 11:47:04 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:47:04 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 11:47:04 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:47:04 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:47:04 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:47:04 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:47:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:47:04 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 11:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:04 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 11:47:04 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 11:47:04 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 11:47:04 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 11:47:04 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 11:47:04 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 11:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 11:47:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:47:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 11:47:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 24 ms -2016-05-03 11:47:05 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 11:47:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:47:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:05 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 11:47:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:05 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 11:47:05 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:47:05 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:47:05 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 11:47:05 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:47:05 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 11:47:05 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:47:05 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:47:05 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 11:47:05 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 11:47:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:05 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 11:47:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 11:47:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:05 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:47:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 11:47:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:05 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:47:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 11:47:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:06 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:47:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 11:47:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:07 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:47:07 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:47:07 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:47:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:47:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:07 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 11:47:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:47:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:47:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:07 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 11:47:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:07 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 11:47:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 122 msc 0 sec -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:47:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:47:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:07 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 11:47:07 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 11:47:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:07 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:47:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:47:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:47:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:47:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 155 msc 0 sec -2016-05-03 11:47:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:47:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 11:47:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 11:47:07 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 11:47:07 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 11:47:07 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 11:47:07 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:47:07 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:47:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:47:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:47:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:47:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 341 msc 0 sec -2016-05-03 11:47:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:47:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:47:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:47:10 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 11:47:10 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:47:10 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:47:11 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 11:47:11 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 11:47:11 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 11:47:11 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 11:47:11 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 11:47:11 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 11:47:11 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:47:11 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 11:47:11 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 11:47:11 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 11:47:11 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 11:47:11 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 11:47:11 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:47:11 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 11:47:11 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 11:47:11 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 11:47:11 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 11:47:11 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 11:47:11 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 11:47:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 11:47:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 11:47:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:47:11 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 11:47:11 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 11:47:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 11:47:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 11:47:11 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 11:47:11 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:47:11 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 11:47:11 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 11:47:11 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 11:47:11 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 11:47:11 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 11:47:11 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 11:47:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 11:47:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 11:47:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:47:11 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 11:47:11 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:47:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:47:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:47:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:47:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:47:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:47:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:47:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:47:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:47:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:47:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:47:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:47:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:47:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:47:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:47:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:47:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:47:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:47:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:47:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:47:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:47:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:47:11 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:47:11 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:47:11 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:47:11 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:47:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:47:11 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:47:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:47:11 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:47:11 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-03 11:47:11 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:47:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:47:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:03 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:48:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:48:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:48:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:48:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:48:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:48:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-03 11:48:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:48:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:48:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:48:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:48:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:48:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:48:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 173 msc 0 sec -2016-05-03 11:48:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:48:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:48:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 163 msc 0 sec -2016-05-03 11:48:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:48:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 150 msc 0 sec -2016-05-03 11:48:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:48:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 157 msc 0 sec -2016-05-03 11:48:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:48:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:48:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:48:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:48:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:48:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:48:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:48:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:48:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:48:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:48:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:48:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:48:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:48:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:48:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:48:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:48:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:48:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:48:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:48:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:48:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:48:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:48:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:48:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:48:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:48:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:48:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 163 msc 0 sec -2016-05-03 11:48:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:48:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:48:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:02 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 11:50:02 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 11:50:02 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 11:50:02 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:50:02 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:50:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:02 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:50:02 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@19f176f4 -2016-05-03 11:50:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:02 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:50:02 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:50:02 DEBUG TemplateModel:83 - 2016-05-03 11:50:02, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:50:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:50:02 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 11:50:04 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:50:04 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:50:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:04 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:50:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:04 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:50:04 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:50:04 DEBUG TemplateModel:83 - 2016-05-03 11:50:04, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:50:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:50:04 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:50:04 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 119 ms -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 11:50:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 11:50:04 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 11:50:04 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:50:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:50:04 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@721d1834 -2016-05-03 11:50:04 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@5f1a5d41 -2016-05-03 11:50:04 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@769d8db5 -2016-05-03 11:50:04 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@7d6ceb09 -2016-05-03 11:50:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 111 ms -2016-05-03 11:50:04 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 11:50:04 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 11:50:04 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 11:50:04 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 11:50:04 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 11:50:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:50:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 11:50:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-03 11:50:04 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 11:50:04 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:50:04 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 11:50:04 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:50:05 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:50:05 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:50:05 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:50:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:50:05 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 11:50:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:05 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 11:50:05 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 11:50:05 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 11:50:05 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 11:50:05 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 11:50:05 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 11:50:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:50:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:50:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 11:50:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 19 ms -2016-05-03 11:50:05 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 11:50:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:05 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 11:50:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:05 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 11:50:05 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:50:05 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 11:50:05 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:50:05 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:50:05 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 11:50:05 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:50:05 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:50:05 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 11:50:05 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 11:50:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:05 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 11:50:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 11:50:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:06 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:50:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 11:50:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:06 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:50:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 11:50:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:06 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:50:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 11:50:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:07 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:50:07 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:50:07 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:07 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 11:50:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:07 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 11:50:07 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 11:50:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 125 msc 0 sec -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:07 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 11:50:07 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 11:50:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:07 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:50:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:50:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 145 msc 0 sec -2016-05-03 11:50:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:50:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:50:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 11:50:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 11:50:07 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 11:50:07 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 11:50:07 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 11:50:07 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:50:07 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:50:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:50:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:50:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 11:50:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 387 msc 0 sec -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:50:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:50:11 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 11:50:11 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:50:11 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:50:11 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 11:50:11 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 11:50:11 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 11:50:11 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 11:50:11 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 11:50:11 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 11:50:11 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:50:11 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 11:50:11 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 11:50:11 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 11:50:11 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 11:50:11 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 11:50:11 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:50:11 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 11:50:11 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 11:50:11 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 11:50:11 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 11:50:11 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 11:50:11 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 11:50:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 11:50:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 11:50:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:50:11 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 11:50:11 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 11:50:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 11:50:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 11:50:11 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 11:50:11 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:50:11 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 11:50:11 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 11:50:11 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 11:50:11 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 11:50:11 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 11:50:11 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 11:50:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 11:50:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 11:50:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:50:11 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 11:50:11 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 199 msc 0 sec -2016-05-03 11:50:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:50:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:53 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:54 INFO WorkspaceExplorerServiceImpl:142 - end time - 164 msc 0 sec -2016-05-03 11:50:54 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:54 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:54 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:54 INFO WorkspaceExplorerServiceImpl:142 - end time - 173 msc 0 sec -2016-05-03 11:50:54 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:54 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:55 INFO WorkspaceExplorerServiceImpl:142 - end time - 155 msc 0 sec -2016-05-03 11:50:55 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:55 INFO WorkspaceExplorerServiceImpl:142 - end time - 176 msc 0 sec -2016-05-03 11:50:55 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:55 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:55 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:55 INFO WorkspaceExplorerServiceImpl:142 - end time - 166 msc 0 sec -2016-05-03 11:50:55 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:50:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:58 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:58 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:58 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:58 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:58 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:58 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 11:50:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:50:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 157 msc 0 sec -2016-05-03 11:50:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:50:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:50:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:50:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:50:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:50:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:50:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:50:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:50:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:50:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 149 msc 0 sec -2016-05-03 11:50:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 172 msc 0 sec -2016-05-03 11:51:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 238 msc 0 sec -2016-05-03 11:51:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:03 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 147 msc 0 sec -2016-05-03 11:51:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 151 msc 0 sec -2016-05-03 11:51:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 142 msc 0 sec -2016-05-03 11:51:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:05 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:05 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:05 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 139 msc 0 sec -2016-05-03 11:51:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:06 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:06 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 138 msc 0 sec -2016-05-03 11:51:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:34 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:34 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:34 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 141 msc 0 sec -2016-05-03 11:51:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 135 msc 0 sec -2016-05-03 11:51:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 139 msc 0 sec -2016-05-03 11:51:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:51:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:51:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:51:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:51:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:51:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:51:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:51:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 128 msc 0 sec -2016-05-03 11:51:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:51:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:52:46 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 11:52:46 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 11:52:46 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 11:52:46 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:52:46 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:52:46 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:52:46 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:52:46 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@a84bf1b -2016-05-03 11:52:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:52:46 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:52:46 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:52:46 DEBUG TemplateModel:83 - 2016-05-03 11:52:46, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:52:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:52:46 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 11:52:47 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 11:52:47 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 11:52:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:52:47 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 11:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:52:47 INFO ASLSession:352 - Logging the entrance -2016-05-03 11:52:47 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 11:52:47 DEBUG TemplateModel:83 - 2016-05-03 11:52:47, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 11:52:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:52:47 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:52:48 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 118 ms -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 11:52:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 11:52:48 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 11:52:48 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:52:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 11:52:48 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@501a5f7 -2016-05-03 11:52:48 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3000b9de -2016-05-03 11:52:48 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@25595c1 -2016-05-03 11:52:48 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@32e79e02 -2016-05-03 11:52:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 105 ms -2016-05-03 11:52:48 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 11:52:48 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 11:52:48 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 11:52:48 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 11:52:48 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 11:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:52:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:52:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 11:52:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-03 11:52:48 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 11:52:48 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:52:48 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 11:52:48 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:52:48 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:52:48 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:52:48 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:52:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:52:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:52:48 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 11:52:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:52:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:52:48 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 11:52:48 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 11:52:48 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 11:52:48 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 11:52:48 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 11:52:48 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 11:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 11:52:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:52:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 11:52:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-03 11:52:49 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 11:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:52:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:52:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 11:52:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 11:52:49 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:52:49 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:52:49 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 11:52:49 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 11:52:49 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 11:52:49 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:52:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:52:49 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:52:49 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 11:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:52:49 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 11:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 11:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:52:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:52:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:52:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:52:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:52:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:52:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 11:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:52:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:52:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:52:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:52:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:52:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:52:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 11:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:52:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:52:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:52:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:52:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:52:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:52:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:52:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 11:52:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 11:52:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:52:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:52:50 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 11:52:50 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 11:52:50 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:52:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:52:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:52:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:52:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:52:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:52:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:52:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:52:50 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 11:52:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:52:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:52:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:52:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:52:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:52:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:52:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:52:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:52:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:52:50 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 11:52:50 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 11:52:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:52:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 107 msc 0 sec -2016-05-03 11:52:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:52:50 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:52:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:52:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:52:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:52:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:52:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:52:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:52:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:52:50 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 11:52:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:52:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:52:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:52:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:52:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-03 11:52:50 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 11:52:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:52:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 11:52:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 11:52:50 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 11:52:50 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 11:52:50 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 11:52:50 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 11:52:50 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 11:52:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 11:52:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 11:52:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 11:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:52:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 188 msc 0 sec -2016-05-03 11:52:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 336 msc 0 sec -2016-05-03 11:53:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:53:00 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 11:53:00 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:53:00 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:53:01 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 11:53:01 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 11:53:01 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 11:53:01 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 11:53:01 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 11:53:01 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 11:53:01 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:53:01 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 11:53:01 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 11:53:01 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 11:53:01 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 11:53:01 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 11:53:01 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:53:01 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 11:53:01 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 11:53:01 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 11:53:01 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 11:53:01 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 11:53:01 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 11:53:01 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 11:53:01 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 11:53:01 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:53:01 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 11:53:01 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 11:53:01 DEBUG WPS2SM:92 - WPS type: -2016-05-03 11:53:01 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 11:53:01 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 11:53:01 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:53:01 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 11:53:01 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 11:53:01 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 11:53:01 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 11:53:01 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 11:53:01 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 11:53:01 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 11:53:01 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 11:53:01 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:53:01 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 11:53:01 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:01 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:01 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:01 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:01 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:01 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:01 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:01 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:01 INFO WorkspaceExplorerServiceImpl:142 - end time - 205 msc 0 sec -2016-05-03 11:53:01 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-03 11:53:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 160 msc 0 sec -2016-05-03 11:53:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-03 11:53:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 11:53:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 157 msc 0 sec -2016-05-03 11:53:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:31 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:32 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-03 11:53:32 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:32 INFO WorkspaceExplorerServiceImpl:142 - end time - 152 msc 0 sec -2016-05-03 11:53:32 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:32 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:32 INFO WorkspaceExplorerServiceImpl:142 - end time - 169 msc 0 sec -2016-05-03 11:53:32 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:32 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 11:53:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 157 msc 0 sec -2016-05-03 11:53:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 152 msc 0 sec -2016-05-03 11:53:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:34 INFO WorkspaceExplorerServiceImpl:142 - end time - 131 msc 0 sec -2016-05-03 11:53:34 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:34 INFO WorkspaceExplorerServiceImpl:142 - end time - 131 msc 0 sec -2016-05-03 11:53:34 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:34 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:34 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:34 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 11:53:34 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 145 msc 0 sec -2016-05-03 11:53:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:40 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 139 msc 0 sec -2016-05-03 11:53:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:41 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:41 INFO WorkspaceExplorerServiceImpl:142 - end time - 132 msc 0 sec -2016-05-03 11:53:41 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:41 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:41 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:41 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:41 INFO WorkspaceExplorerServiceImpl:142 - end time - 127 msc 0 sec -2016-05-03 11:53:41 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 147 msc 0 sec -2016-05-03 11:53:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 129 msc 0 sec -2016-05-03 11:53:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 127 msc 0 sec -2016-05-03 11:53:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 145 msc 0 sec -2016-05-03 11:53:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 123 msc 0 sec -2016-05-03 11:53:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 158 msc 0 sec -2016-05-03 11:53:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 125 msc 0 sec -2016-05-03 11:53:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:45 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:45 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:53:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:53:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:45 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:45 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:45 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:45 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:45 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:45 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:45 INFO WorkspaceExplorerServiceImpl:142 - end time - 130 msc 0 sec -2016-05-03 11:53:45 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:53:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:53:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:53:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 11:53:55 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 11:53:55 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:53:55 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 11:53:56 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN - BIOCLIMATE_HSPEN - A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes - - - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 11:53:56 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 11:53:56 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 11:53:56 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 11:53:56 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 11:53:56 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 11:53:56 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 11:53:56 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 11:53:56 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 11:53:56 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 11:53:56 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 11:53:56 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 11:53:56 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:53:56 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 11:53:56 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 11:53:56 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 11:53:56 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 11:53:56 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 11:53:56 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 11:53:56 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 11:53:56 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 11:53:56 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:53:56 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 11:53:56 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 11:53:56 DEBUG WPS2SM:92 - WPS type: -2016-05-03 11:53:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 11:53:56 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 11:53:56 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 11:53:56 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 11:53:56 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 11:53:56 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 11:53:56 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 11:53:56 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 11:53:56 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 11:53:56 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 11:53:56 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 11:53:56 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 11:53:56 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 11:53:56 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:53:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:56 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:53:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:53:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:53:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:53:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:56 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:53:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:53:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:53:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:53:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:53:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:53:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:53:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:53:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:53:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:53:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:53:56 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:53:56 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:53:56 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:53:56 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:53:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:56 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:53:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:53:56 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:53:56 INFO WorkspaceExplorerServiceImpl:142 - end time - 128 msc 0 sec -2016-05-03 11:53:56 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:54:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:21 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:54:21 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:54:21 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:54:21 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:54:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:21 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:54:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:21 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:54:21 INFO WorkspaceExplorerServiceImpl:142 - end time - 139 msc 0 sec -2016-05-03 11:54:21 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:54:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:41 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:54:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:54:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:54:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 122 msc 0 sec -2016-05-03 11:54:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:42 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:54:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 132 msc 0 sec -2016-05-03 11:54:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:54:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 152 msc 0 sec -2016-05-03 11:54:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:54:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 128 msc 0 sec -2016-05-03 11:54:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:54:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 124 msc 0 sec -2016-05-03 11:54:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:54:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:54:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:54:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:54:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:54:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:54:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:54:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:54:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:54:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:54:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:54:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 129 msc 0 sec -2016-05-03 11:54:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:54 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 11:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:54:54 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:54:54 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:54:54 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:54:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:54 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:54:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:54 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:54:54 INFO WorkspaceExplorerServiceImpl:142 - end time - 238 msc 0 sec -2016-05-03 11:54:54 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 11:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:54 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 11:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 11:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 11:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 11:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 11:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 11:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 11:54:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 11:54:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 11:54:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 11:54:55 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 11:54:55 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 11:54:55 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 11:54:55 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 11:54:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:55 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 11:54:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 11:54:55 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 11:54:55 INFO WorkspaceExplorerServiceImpl:142 - end time - 141 msc 0 sec -2016-05-03 11:54:55 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 11:55:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:55:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 11:56:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 11:56:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:06:48 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 12:06:48 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 12:06:48 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 12:06:48 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:06:48 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:06:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:06:48 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:06:48 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@1bcb781e -2016-05-03 12:06:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:06:48 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:06:48 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:06:48 DEBUG TemplateModel:83 - 2016-05-03 12:06:48, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:06:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:06:48 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 12:06:50 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:06:50 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:06:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:06:50 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:06:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:06:50 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:06:50 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:06:50 DEBUG TemplateModel:83 - 2016-05-03 12:06:50, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:06:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:06:50 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:06:50 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 122 ms -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 12:06:50 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 12:06:50 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 12:06:50 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:06:51 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:06:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@4ac096f3 -2016-05-03 12:06:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6cd408b1 -2016-05-03 12:06:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@394cebd2 -2016-05-03 12:06:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@55e925e2 -2016-05-03 12:06:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 112 ms -2016-05-03 12:06:51 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 12:06:51 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 12:06:51 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 12:06:51 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 12:06:51 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 12:06:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:06:51 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:06:51 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 12:06:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-03 12:06:51 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 12:06:51 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:06:51 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 12:06:51 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:06:51 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:06:51 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:06:51 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:06:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:06:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:06:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:06:51 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 12:06:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:51 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 12:06:51 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 12:06:51 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 12:06:51 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 12:06:51 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 12:06:51 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 12:06:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 12:06:51 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:06:51 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 12:06:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 31 ms -2016-05-03 12:06:51 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 12:06:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:06:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:51 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 12:06:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:51 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 12:06:52 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:06:52 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:06:52 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 12:06:52 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:06:52 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:06:52 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 12:06:52 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:06:52 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:52 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 12:06:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 12:06:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 12:06:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 12:06:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:54 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:06:54 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:06:54 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:06:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:06:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:54 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 12:06:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:06:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:06:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:54 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 12:06:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:54 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 12:06:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 121 msc 0 sec -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:06:54 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:06:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:54 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 12:06:54 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 12:06:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:54 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:06:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 118 msc 0 sec -2016-05-03 12:06:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:06:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:06:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 12:06:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:06:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 12:06:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 12:06:54 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 12:06:54 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 12:06:54 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 12:06:54 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 12:06:54 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 12:06:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:06:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:06:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 12:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:06:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 352 msc 0 sec -2016-05-03 12:06:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:06:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:06:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:06:57 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:06:57 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:06:57 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:06:58 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:06:58 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:06:58 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:06:58 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 12:06:58 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:06:58 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:06:58 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:06:58 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:06:58 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:06:58 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:06:58 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:06:58 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:06:58 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:06:58 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:06:58 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:06:58 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:06:58 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:06:58 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:06:58 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:06:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:06:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:06:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:06:58 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:06:58 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:06:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:06:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:06:58 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:06:58 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:06:58 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:06:58 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:06:58 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:06:58 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:06:58 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:06:58 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:06:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:06:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:06:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:06:58 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:06:58 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:06:58 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:06:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:06:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:06:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:06:58 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:06:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:06:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:06:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:06:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:06:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:06:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:06:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:06:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:06:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:06:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:06:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:06:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:06:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:06:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:06:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:06:58 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:06:58 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:06:58 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:06:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:06:58 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:06:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:06:58 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:06:58 INFO WorkspaceExplorerServiceImpl:142 - end time - 209 msc 0 sec -2016-05-03 12:06:58 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:10 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:10 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 195 msc 0 sec -2016-05-03 12:07:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:10 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 166 msc 0 sec -2016-05-03 12:07:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:11 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:11 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:11 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:11 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:11 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:11 INFO WorkspaceExplorerServiceImpl:142 - end time - 206 msc 0 sec -2016-05-03 12:07:11 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 198 msc 0 sec -2016-05-03 12:07:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:12 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 12:07:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 156 msc 0 sec -2016-05-03 12:07:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 151 msc 0 sec -2016-05-03 12:07:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 144 msc 0 sec -2016-05-03 12:07:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 178 msc 0 sec -2016-05-03 12:07:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 149 msc 0 sec -2016-05-03 12:07:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 1136 msc 1 sec -2016-05-03 12:07:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 137 msc 0 sec -2016-05-03 12:07:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 12:07:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:07:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:07:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:07:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:07:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:07:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:07:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:07:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:07:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:07:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:07:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:07:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:07:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:07:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:07:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:07:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:07:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:07:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:07:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:07:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:07:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:07:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 148 msc 0 sec -2016-05-03 12:07:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:07:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:07:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:08:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:09:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:10:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:10:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:11:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:11:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:12:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:12:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:13:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:13:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:14:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:08 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:14:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:14:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:14:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:14:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:14:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:14:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:14:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:14:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 150 msc 0 sec -2016-05-03 12:14:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:14:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:14:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 138 msc 0 sec -2016-05-03 12:14:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:14:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 137 msc 0 sec -2016-05-03 12:14:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:14:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 135 msc 0 sec -2016-05-03 12:14:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:14:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:14:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:14:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:14:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:14:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:14:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:14:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:14:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 145 msc 0 sec -2016-05-03 12:14:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:17:05 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 12:17:05 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 12:17:05 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 12:17:05 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:17:05 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:17:05 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:17:05 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:17:05 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@5e16065e -2016-05-03 12:17:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:17:05 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:17:05 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:17:05 DEBUG TemplateModel:83 - 2016-05-03 12:17:05, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:17:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:17:05 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 12:17:07 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:17:07 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:17:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:17:07 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:17:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:17:07 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:17:07 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:17:07 DEBUG TemplateModel:83 - 2016-05-03 12:17:07, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:17:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:17:07 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:17:07 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 130 ms -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 12:17:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 12:17:07 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 12:17:07 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:17:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:17:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@73a26d7c -2016-05-03 12:17:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@5160c15 -2016-05-03 12:17:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@6506f9f7 -2016-05-03 12:17:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4d1da123 -2016-05-03 12:17:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-05-03 12:17:08 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 12:17:08 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:17:08 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:17:08 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:17:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:17:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:17:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:17:08 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 12:17:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:08 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 12:17:08 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 12:17:08 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 12:17:08 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 12:17:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:17:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:17:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 12:17:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-05-03 12:17:08 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 12:17:08 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 12:17:08 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:17:08 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 12:17:08 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 12:17:08 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 12:17:08 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 12:17:08 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:17:08 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 12:17:08 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 12:17:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 12:17:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:17:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 12:17:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 78 ms -2016-05-03 12:17:08 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 12:17:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:17:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:08 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 12:17:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:08 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 12:17:08 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:17:09 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:17:09 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 12:17:09 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:17:09 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:17:09 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:09 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:17:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 12:17:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:17:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 12:17:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:09 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:17:09 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 12:17:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:17:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 12:17:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:17:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 12:17:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:10 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:17:10 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:17:10 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:17:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:17:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:10 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 12:17:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:17:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:17:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:10 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 12:17:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:10 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 12:17:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 123 msc 0 sec -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:17:10 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:17:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:10 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 12:17:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:10 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 12:17:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:10 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:17:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:17:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:17:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 118 msc 0 sec -2016-05-03 12:17:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 12:17:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:17:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 12:17:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 12:17:10 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 12:17:10 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 12:17:10 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 12:17:10 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 12:17:10 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 12:17:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:17:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:17:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 12:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:17:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 346 msc 0 sec -2016-05-03 12:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:17:15 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:17:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:17:15 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:17:15 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:17:15 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:17:16 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:17:16 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:17:16 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:17:16 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 12:17:16 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:17:16 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:17:16 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:17:16 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:17:16 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:17:16 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:17:16 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:17:16 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:17:16 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:17:16 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:17:16 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:17:16 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:17:16 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:17:16 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:17:16 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:17:16 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:17:16 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:17:16 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:17:16 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:17:16 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:17:16 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:17:16 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:17:16 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:17:16 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:17:16 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:17:16 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:17:16 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:17:16 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:17:16 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:17:16 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:17:16 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:17:16 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:17:16 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:17:16 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:17:16 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:17:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:17:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:17:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:16 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:17:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:17:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:16 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:17:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:17:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:17:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:17:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:17:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:17:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:17:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:17:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:17:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:17:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:17:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:17:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:17:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:17:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:17:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:17:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:17:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:17:16 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:17:16 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:17:16 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:17:16 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:17:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:17:16 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:17:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:17:16 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:17:16 INFO WorkspaceExplorerServiceImpl:142 - end time - 195 msc 0 sec -2016-05-03 12:17:16 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:18:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:18:00 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:18:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:18:55 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:19:50 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:20:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:20:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:21:28 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 12:21:28 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 12:21:28 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 12:21:28 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:21:28 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:21:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:21:28 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:21:28 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@32fb8afb -2016-05-03 12:21:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:21:28 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:21:28 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:21:28 DEBUG TemplateModel:83 - 2016-05-03 12:21:28, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:21:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:21:28 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 12:21:30 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:21:30 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:21:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:21:30 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:21:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:21:30 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:21:30 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:21:30 DEBUG TemplateModel:83 - 2016-05-03 12:21:30, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:21:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:21:30 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:21:30 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 127 ms -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 12:21:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 12:21:30 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 12:21:30 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:21:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:21:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@42318130 -2016-05-03 12:21:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@7f877331 -2016-05-03 12:21:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@321c0aa -2016-05-03 12:21:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@41756abf -2016-05-03 12:21:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 113 ms -2016-05-03 12:21:30 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 12:21:30 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 12:21:30 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 12:21:30 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 12:21:30 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 12:21:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:21:30 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:21:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 12:21:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-03 12:21:31 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 12:21:31 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:21:31 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 12:21:31 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:21:31 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:21:31 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:21:31 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:21:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:21:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:21:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:21:31 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 12:21:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:31 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 12:21:31 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 12:21:31 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 12:21:31 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 12:21:31 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 12:21:31 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 12:21:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 12:21:31 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:21:31 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 12:21:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 71 ms -2016-05-03 12:21:31 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 12:21:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:21:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:31 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 12:21:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:31 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 12:21:31 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:21:31 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:21:31 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 12:21:31 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:21:31 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:21:31 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 12:21:31 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 12:21:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:21:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 12:21:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:21:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 12:21:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:21:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 12:21:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:21:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 12:21:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:21:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:21:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:21:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:32 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 12:21:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:21:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:21:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:21:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:32 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 12:21:32 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 12:21:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 162 msc 0 sec -2016-05-03 12:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:33 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:21:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:21:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:33 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:21:33 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 12:21:33 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 12:21:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 12:21:33 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:21:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:21:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:21:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 36 ms -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 12:21:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:21:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 12:21:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 150 msc 0 sec -2016-05-03 12:21:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 12:21:33 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 12:21:33 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 12:21:33 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 12:21:33 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 12:21:33 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 12:21:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:21:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:21:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:21:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 352 msc 0 sec -2016-05-03 12:21:39 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:21:39 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:21:39 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:21:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:21:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:21:39 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:21:39 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:21:39 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:21:40 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:21:40 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:21:40 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:21:40 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 12:21:40 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:21:40 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:21:40 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:21:40 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:21:40 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:21:40 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:21:40 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:21:40 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:21:40 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:21:40 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:21:40 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:21:40 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:21:40 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:21:40 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:21:40 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:21:40 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:21:40 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:21:40 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:21:40 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:21:40 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:21:40 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:21:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:21:40 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:21:40 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:21:40 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:21:40 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:21:40 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:21:40 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:21:40 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:21:40 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:21:40 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:21:40 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:21:40 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:21:40 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:21:40 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:21:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:21:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:21:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:21:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:21:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:40 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:21:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:21:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:21:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:21:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:21:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:21:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:21:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:21:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:21:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:21:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:21:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:21:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:21:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:21:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:21:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:21:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:21:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:21:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:21:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:21:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:21:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:21:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:21:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:21:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:21:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:21:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 193 msc 0 sec -2016-05-03 12:21:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:22:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:22:08 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:22:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:22:08 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 12:22:08 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:22:08 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:22:09 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN - BIOCLIMATE_HSPEN - A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes - - - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:22:09 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 12:22:09 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:22:09 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:22:09 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:22:09 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 12:22:09 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:22:09 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:22:09 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:22:09 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:22:09 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:22:09 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:22:09 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:22:09 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 12:22:09 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 12:22:09 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:22:09 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:22:09 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 12:22:09 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 12:22:09 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:22:09 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:22:09 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 12:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:22:09 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:22:09 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:22:09 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:22:09 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:22:09 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 12:22:09 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 12:22:09 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:22:09 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:22:09 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:22:09 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 12:22:09 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:22:09 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:22:09 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:22:09 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:22:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:22:09 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:22:09 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:22:09 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:22:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:22:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:22:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:22:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:22:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 194 msc 0 sec -2016-05-03 12:22:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:22:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:23:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:23:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:23:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:23:36 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:23:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:23:36 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:23:36 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:23:36 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:23:36 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:23:36 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:23:36 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:23:36 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:23:36 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:23:36 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:23:36 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:23:36 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:23:36 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:23:36 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:23:36 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:23:36 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:23:36 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:36 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:23:36 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:23:36 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:36 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:36 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:23:36 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:23:36 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:23:36 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:23:36 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:23:36 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:23:36 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:23:36 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:23:36 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:23:36 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:23:36 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:36 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:23:36 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:23:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:23:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:23:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:23:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:37 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:23:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:23:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:23:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:23:37 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:23:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:23:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:23:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:23:37 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:23:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:37 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:23:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:23:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:23:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:23:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:23:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:23:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:23:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:23:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 189 msc 0 sec -2016-05-03 12:23:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:23:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:23:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:23:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:23:42 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 12:23:42 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 12:23:42 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:23:42 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:23:42 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:23:42 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:23:42 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:23:42 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:23:42 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:23:42 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 12:23:42 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 12:23:42 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:23:42 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:23:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 12:23:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 12:23:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:42 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:23:42 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 12:23:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:42 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:23:42 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:23:42 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:23:42 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:23:42 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 12:23:42 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 12:23:42 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:23:42 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:23:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:23:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 12:23:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:42 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:23:42 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:23:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:23:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:23:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:23:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:23:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:23:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:23:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:23:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:23:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:23:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:23:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:23:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:23:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:23:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:23:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:23:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:23:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:23:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:23:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:23:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:23:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 12:23:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:23:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:23:57 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 12:23:57 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:23:57 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:23:58 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM - BIONYM - An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - - - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:23:58 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 12:23:58 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:23:58 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 12:23:58 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:23:58 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:23:58 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 12:23:58 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:23:58 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:23:58 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:23:58 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 12:23:58 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 12:23:58 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 12:23:58 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 12:23:58 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 12:23:58 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 12:23:58 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 12:23:58 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 12:23:58 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 12:23:58 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 12:23:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:23:58 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:23:58 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 12:23:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:23:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 12:23:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:23:58 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 12:23:58 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:23:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:23:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:23:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:23:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:23:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:23:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:23:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:23:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:23:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:23:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:23:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:23:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:23:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:23:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:23:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:23:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:23:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:23:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:23:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:23:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:23:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:23:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:23:58 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:23:58 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:23:58 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:23:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:23:58 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:23:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:23:58 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:23:58 INFO WorkspaceExplorerServiceImpl:142 - end time - 177 msc 0 sec -2016-05-03 12:23:58 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:24:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:24:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:24:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:24:28 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:24:28 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:24:28 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:24:28 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:24:28 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:24:28 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:24:28 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:24:28 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:24:28 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:24:28 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:24:28 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:24:28 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:24:28 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:24:28 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:24:28 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:24:28 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:24:28 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:24:28 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:24:28 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:24:28 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:24:28 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:24:28 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:24:28 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:24:28 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:24:28 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:24:28 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:24:28 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:24:28 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:24:28 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:24:28 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:24:28 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:24:28 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:24:28 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:24:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:24:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:24:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:24:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:24:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:24:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:24:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:24:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:24:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:24:29 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:24:29 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:24:29 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:24:29 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:24:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:24:29 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:24:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:24:29 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:24:29 INFO WorkspaceExplorerServiceImpl:142 - end time - 174 msc 0 sec -2016-05-03 12:24:29 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:25:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:25:08 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:26:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:26:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:26:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:26:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:27:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:27:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:28:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:28:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:29:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:29:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:30:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:30:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:31:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:32:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:32:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:22 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 12:34:22 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 12:34:22 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 12:34:22 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:34:22 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:34:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:22 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:34:22 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3b4f5092 -2016-05-03 12:34:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:22 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:34:22 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:34:22 DEBUG TemplateModel:83 - 2016-05-03 12:34:22, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:34:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:34:22 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 12:34:23 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:34:23 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:34:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:34:23 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:34:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:23 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:34:23 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:34:23 DEBUG TemplateModel:83 - 2016-05-03 12:34:23, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:34:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:34:23 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:34:24 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 141 ms -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 12:34:24 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 12:34:24 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 12:34:24 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:34:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:34:24 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@6fb639dd -2016-05-03 12:34:24 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@a1e03ac -2016-05-03 12:34:24 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@3a905060 -2016-05-03 12:34:24 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4afa5fc2 -2016-05-03 12:34:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 198 ms -2016-05-03 12:34:24 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 12:34:24 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 12:34:24 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 12:34:24 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 12:34:24 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 12:34:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:24 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:34:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 12:34:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-03 12:34:24 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 12:34:24 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:34:24 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 12:34:24 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:34:24 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:34:24 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:34:24 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:34:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:34:24 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:34:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:34:24 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 12:34:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:24 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 12:34:24 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 12:34:24 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 12:34:24 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 12:34:24 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 12:34:24 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 12:34:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 12:34:24 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:34:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 12:34:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-03 12:34:25 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 12:34:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:34:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:25 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 12:34:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:25 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 12:34:25 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:34:25 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 12:34:25 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:34:25 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:34:25 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 12:34:25 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:34:25 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:34:25 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 12:34:25 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 12:34:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:25 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:34:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 12:34:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:25 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:34:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 12:34:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:25 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:34:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 12:34:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:26 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:34:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 12:34:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:27 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:34:27 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:34:27 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:27 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 12:34:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:27 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 12:34:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:27 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 12:34:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:27 INFO WorkspaceExplorerServiceImpl:188 - end time - 107 msc 0 sec -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:34:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:34:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:27 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 12:34:27 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 12:34:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:27 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 12:34:27 INFO WorkspaceExplorerServiceImpl:188 - end time - 113 msc 0 sec -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:27 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:34:27 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:34:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:34:27 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:34:27 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 12:34:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 12:34:27 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 12:34:27 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 12:34:27 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 12:34:27 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:34:27 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:34:27 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:34:27 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:34:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:27 INFO WorkspaceExplorerServiceImpl:188 - end time - 372 msc 0 sec -2016-05-03 12:34:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:34:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:34:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:34:30 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:34:30 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:34:30 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:34:31 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:34:31 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:34:31 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:34:31 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 12:34:31 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:34:31 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:34:31 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:34:31 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:34:31 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:34:31 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:34:31 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:34:31 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:34:31 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:34:31 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:34:31 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:34:31 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:34:31 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:34:31 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:34:31 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:34:31 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:34:31 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:34:31 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:34:31 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:34:31 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:34:31 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:34:31 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:34:31 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:34:31 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:34:31 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:34:31 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:34:31 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:34:31 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:34:31 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:34:31 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:34:31 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:34:31 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:34:31 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:34:31 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:34:31 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:34:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:34:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:31 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:34:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:34:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:34:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:34:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:34:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:31 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:34:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:34:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:34:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:34:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:34:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:34:31 INFO WorkspaceExplorerServiceImpl:142 - end time - 182 msc 0 sec -2016-05-03 12:34:31 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:34:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:46 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:46 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:46 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:34:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:34:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:46 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:34:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:34:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:34:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:46 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:46 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:47 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:47 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:34:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:47 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:34:47 INFO WorkspaceExplorerServiceImpl:142 - end time - 164 msc 0 sec -2016-05-03 12:34:47 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:34:47 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:47 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:34:47 INFO WorkspaceExplorerServiceImpl:142 - end time - 1165 msc 1 sec -2016-05-03 12:34:47 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:47 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:34:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:48 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:34:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:48 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:34:48 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:34:48 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:34:48 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:34:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:48 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:34:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:48 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:34:48 INFO WorkspaceExplorerServiceImpl:142 - end time - 167 msc 0 sec -2016-05-03 12:34:48 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:34:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:34:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:34:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:34:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:34:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:34:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 1141 msc 1 sec -2016-05-03 12:34:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:34:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:34:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:34:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:34:57 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 12:34:57 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:34:57 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:34:58 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN - BIOCLIMATE_HSPEN - A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes - - - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:34:58 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:34:58 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:34:58 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 12:34:58 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:34:58 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:34:58 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:34:58 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 12:34:58 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:34:58 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:34:58 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:34:58 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:34:58 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:34:58 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:34:58 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:34:58 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 12:34:58 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 12:34:58 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:34:58 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:34:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 12:34:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 12:34:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:34:58 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:34:58 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 12:34:58 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:34:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:34:58 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:34:58 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:34:58 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:34:58 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:34:58 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 12:34:58 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 12:34:58 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:34:58 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:34:58 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:34:58 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 12:34:58 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:34:58 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:34:58 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:34:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:34:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:34:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:34:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:34:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:58 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:34:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:34:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:34:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:34:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:34:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:34:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:34:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:34:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:34:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:34:58 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:34:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:34:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:34:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:34:58 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:34:58 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:34:58 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:34:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:58 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:34:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:34:58 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:34:58 INFO WorkspaceExplorerServiceImpl:142 - end time - 150 msc 0 sec -2016-05-03 12:34:58 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:35:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:35:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:35:02 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:35:02 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:35:02 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:35:02 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:35:02 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:35:02 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:35:02 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:35:02 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:35:02 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:35:02 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:35:02 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:35:02 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:35:02 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:35:02 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:35:02 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:35:02 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:02 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:35:02 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:35:02 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:02 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:02 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:35:02 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:35:02 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:35:02 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:35:02 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:35:02 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:35:02 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:35:02 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:35:02 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:35:02 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:35:02 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:02 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:35:02 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:35:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:35:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:35:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:35:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:35:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:35:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:35:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:35:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:35:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:35:02 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:35:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:35:02 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:35:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:35:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:35:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:35:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:35:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:35:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:35:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:35:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:35:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 190 msc 0 sec -2016-05-03 12:35:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:35:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:35:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:35:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:35:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:35:18 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 12:35:18 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 12:35:18 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:35:18 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:35:18 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:35:18 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:35:18 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:35:18 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:35:18 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:35:18 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 12:35:18 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 12:35:18 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:35:18 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:35:18 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 12:35:18 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 12:35:18 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:18 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:35:18 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 12:35:18 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:35:18 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:35:18 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:35:18 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:35:18 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 12:35:18 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 12:35:18 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:35:18 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:35:18 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:35:18 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 12:35:18 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:18 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:35:18 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:35:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:35:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:35:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:35:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:35:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:35:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:35:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:35:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:35:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:35:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:35:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:35:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:35:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:35:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:35:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:35:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:35:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:35:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:35:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:35:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:35:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:35:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:35:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 133 msc 0 sec -2016-05-03 12:35:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:35:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:35:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:35:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:35:21 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 12:35:21 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:35:21 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:35:22 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM - BIONYM - An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - - - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:35:22 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 12:35:22 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:35:22 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 12:35:22 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:35:22 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:35:22 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 12:35:22 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:35:22 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:35:22 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:35:22 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 12:35:22 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 12:35:22 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 12:35:22 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 12:35:22 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 12:35:22 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 12:35:22 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 12:35:22 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 12:35:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 12:35:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 12:35:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:35:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:35:22 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 12:35:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:35:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 12:35:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:35:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 12:35:22 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:35:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:35:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:35:22 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:35:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:22 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:35:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:35:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:35:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:35:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:35:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:35:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:35:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:35:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:35:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:35:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:35:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:35:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:35:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:35:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:35:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:35:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:35:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:35:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:35:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:35:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:35:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:35:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:35:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:35:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:35:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:35:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 179 msc 0 sec -2016-05-03 12:35:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:35:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:35:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:35:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:35:59 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL -2016-05-03 12:35:59 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:35:59 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:36:00 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL - BIONYM_LOCAL - A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - SpeciesAuthorName - The scientific name of the species, possibly with authorship - Name of the parameter: SpeciesAuthorName. The scientific name of the species, possibly with authorship - - - - Gadus morhua (Linnaeus, 1758) - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:36:00 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - SpeciesAuthorName - The scientific name of the species, possibly with authorship - Name of the parameter: SpeciesAuthorName. The scientific name of the species, possibly with authorship - - - - Gadus morhua (Linnaeus, 1758) - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 12:36:00 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:36:00 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:36:00 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->SpeciesAuthorName is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: Gadus morhua (Linnaeus, 1758) -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The scientific name of the species, possibly with authorship -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:SpeciesAuthorName -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=Gadus morhua (Linnaeus, 1758), value=null, name=SpeciesAuthorName, description=The scientific name of the species, possibly with authorship [Min N. of Entries:1; Max N. of Entries:1; default:Gadus morhua (Linnaeus, 1758)], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 12:36:00 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 12:36:00 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 12:36:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:36:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:36:00 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 12:36:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:36:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 12:36:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:36:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 12:36:00 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue=Gadus morhua (Linnaeus, 1758), value=null, name=SpeciesAuthorName, description=The scientific name of the species, possibly with authorship [Min N. of Entries:1; Max N. of Entries:1; default:Gadus morhua (Linnaeus, 1758)], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 12:36:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:36:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:37:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:37:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:37:03 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:37:03 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:37:03 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:37:03 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:37:03 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:37:03 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:37:03 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:37:03 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:37:03 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:37:03 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:37:03 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:37:03 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:37:03 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:37:03 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:37:03 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:37:03 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:37:03 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:37:03 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:37:03 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:37:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:37:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:37:03 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:37:03 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:37:03 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:37:03 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:37:03 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:37:03 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:37:03 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:37:03 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:37:03 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:37:03 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:37:03 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:37:03 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:03 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:37:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:37:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:37:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:37:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:37:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:37:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:37:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:37:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 157 msc 0 sec -2016-05-03 12:37:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:37:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:13 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:13 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:37:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:37:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:13 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:37:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:37:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:37:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:37:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:37:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:37:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:37:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 129 msc 0 sec -2016-05-03 12:37:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:14 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:37:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:37:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:37:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:37:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:37:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:37:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:37:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:37:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:14 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:37:14 INFO WorkspaceExplorerServiceImpl:142 - end time - 138 msc 0 sec -2016-05-03 12:37:14 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:15 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:15 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:15 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:37:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:15 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:37:15 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:37:15 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:37:15 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:37:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:15 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:37:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:15 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:37:15 INFO WorkspaceExplorerServiceImpl:142 - end time - 150 msc 0 sec -2016-05-03 12:37:15 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:57 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:37:57 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:37:57 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:37:57 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:37:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:57 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:37:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:57 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:37:57 INFO WorkspaceExplorerServiceImpl:142 - end time - 150 msc 0 sec -2016-05-03 12:37:57 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:37:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:57 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:37:58 INFO WorkspaceExplorerServiceImpl:142 - end time - 130 msc 0 sec -2016-05-03 12:37:58 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:37:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:37:58 INFO WorkspaceExplorerServiceImpl:142 - end time - 135 msc 0 sec -2016-05-03 12:37:58 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:37:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:37:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:37:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:37:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:37:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:37:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:37:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:37:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:37:58 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:37:58 INFO WorkspaceExplorerServiceImpl:142 - end time - 136 msc 0 sec -2016-05-03 12:37:58 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:37:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:37:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:37:59 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:37:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:37:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:02 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:38:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:38:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:38:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:38:08 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 12:38:08 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 12:38:08 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:38:08 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:38:08 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:38:08 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:38:08 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:38:08 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:38:08 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:38:08 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 12:38:08 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 12:38:08 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:38:08 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:38:08 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 12:38:08 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 12:38:08 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:08 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:38:08 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 12:38:08 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:08 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:08 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:38:08 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:38:08 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:38:08 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:38:08 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 12:38:08 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 12:38:08 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:38:08 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:38:08 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:38:08 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 12:38:08 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:08 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:38:08 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:38:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:08 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:38:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:38:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:38:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:38:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:08 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:38:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:38:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:09 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:38:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:38:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:38:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:38:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:38:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:38:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:38:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:38:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:38:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:38:09 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:38:09 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:38:09 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:38:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:38:09 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:38:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:38:09 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:38:09 INFO WorkspaceExplorerServiceImpl:142 - end time - 141 msc 0 sec -2016-05-03 12:38:09 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:38:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:38:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:38:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:38:11 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 12:38:11 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 12:38:11 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:38:11 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:38:11 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:38:11 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 12:38:11 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 12:38:11 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 12:38:11 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 12:38:11 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 12:38:11 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 12:38:11 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 12:38:11 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 12:38:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 12:38:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 12:38:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:38:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:38:11 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 12:38:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:38:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 12:38:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:38:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 12:38:11 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 12:38:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:38:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:38:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:38:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:38:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:38:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:38:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:38:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:38:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:38:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:38:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:12 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:38:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:38:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:38:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:38:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:38:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:38:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:38:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:38:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:38:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:38:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:38:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:38:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:38:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:38:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:38:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:38:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 122 msc 0 sec -2016-05-03 12:38:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:38:22 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:38:22 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:38:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:38:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:22 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:38:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:38:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:38:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:38:22 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 12:38:22 DEBUG ServiceEngine:306 - get() - start -2016-05-03 12:38:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:38:22 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:38:22 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 12:38:22 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 12:38:22 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:38:22 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 12:38:22 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 12:38:22 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:38:22 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 12:38:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:38:22 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:38:22 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:38:22 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:38:22 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:38:22 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:38:22 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:22 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:22 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:22 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc10b54e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@77734daf, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@32f1596d, socketFactory=javax.net.DefaultSocketFactory@3b494fc1, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:38:22 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:38:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:38:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:22 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:38:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:38:22 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:38:22 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 12:38:22 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 12:38:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 43 msc 0 sec -2016-05-03 12:38:22 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:38:22 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1867431}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=7011940, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:22 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:38:22 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:22 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:22 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:256647}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 12:38:22 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 12:38:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1650963, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:22 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2139161}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=948904, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:22 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1552944}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1485214, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 12:38:22 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1867432}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867432}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG command:56 - Command execution completed -2016-05-03 12:38:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867432}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG command:56 - Command execution completed -2016-05-03 12:38:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867432}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG command:56 - Command execution completed -2016-05-03 12:38:22 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 12:38:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867432}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG command:56 - Command execution completed -2016-05-03 12:38:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867432}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:22 DEBUG command:56 - Command execution completed -2016-05-03 12:38:22 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1867432}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:23 DEBUG query:56 - Query completed -2016-05-03 12:38:23 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 12:38:23 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2139161} -2016-05-03 12:38:23 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1552944} -2016-05-03 12:38:23 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:256647} -2016-05-03 12:38:23 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1867432}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:38:23 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1867432} -2016-05-03 12:38:23 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1867431} -2016-05-03 12:38:23 INFO MongoIO:508 - Mongo has been closed -2016-05-03 12:38:23 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 12:38:23 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 12:38:23 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 12:38:23 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:38:23 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:38:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:38:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:38:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:38:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:23 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:38:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:23 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:38:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:23 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:38:23 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:38:24 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 12:38:24 DEBUG ServiceEngine:306 - get() - start -2016-05-03 12:38:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:38:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:38:24 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 12:38:24 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 12:38:24 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:38:24 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 12:38:24 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 12:38:24 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:38:24 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 12:38:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:38:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:38:24 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:38:24 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:38:24 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:38:24 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:38:24 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:24 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:24 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:24 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc10b54e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@77734daf, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@32f1596d, socketFactory=javax.net.DefaultSocketFactory@3b494fc1, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:38:24 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:38:24 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:38:24 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1867433}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1891365, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:24 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:38:24 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:24 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:24 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:24 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2139162}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1001717, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:24 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:256648}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1368611, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:24 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1552946}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1382268, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 12:38:24 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1867434}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867434}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG command:56 - Command execution completed -2016-05-03 12:38:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867434}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG command:56 - Command execution completed -2016-05-03 12:38:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867434}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG command:56 - Command execution completed -2016-05-03 12:38:24 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 12:38:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867434}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG command:56 - Command execution completed -2016-05-03 12:38:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867434}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:24 DEBUG command:56 - Command execution completed -2016-05-03 12:38:24 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1867434}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:38:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:38:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:38:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:38:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:25 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:38:25 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:38:25 DEBUG query:56 - Query completed -2016-05-03 12:38:25 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 12:38:25 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2139162} -2016-05-03 12:38:25 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:256648} -2016-05-03 12:38:25 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1552946} -2016-05-03 12:38:25 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1867434}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:38:25 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1867434} -2016-05-03 12:38:25 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1867433} -2016-05-03 12:38:25 INFO MongoIO:508 - Mongo has been closed -2016-05-03 12:38:25 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 12:38:25 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 12:38:25 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 12:38:25 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 12:38:25 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 12:38:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 40 msc 0 sec -2016-05-03 12:38:25 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:38:25 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 12:38:25 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:38:25 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 12:38:25 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 12:38:25 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:38:25 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:38:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:38:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:25 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:38:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:38:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:25 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:38:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:38:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:38:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:25 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:38:25 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:38:25 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:38:25 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 12:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:38:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:38:26 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:38:26 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 12:38:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:26 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:38:26 DEBUG ServiceEngine:193 - get() - start -2016-05-03 12:38:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:38:26 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:38:26 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 12:38:26 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 12:38:26 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:38:26 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 12:38:26 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 12:38:26 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:38:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:38:26 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:38:26 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:38:26 DEBUG Operation:173 - get(String) - start -2016-05-03 12:38:26 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:38:26 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:38:26 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:38:26 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:38:26 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:26 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:26 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:26 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc10b54e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@77734daf, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@32f1596d, socketFactory=javax.net.DefaultSocketFactory@3b494fc1, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:38:26 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:38:26 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:38:26 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:256650}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1575780, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:26 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:38:26 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:26 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:26 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1867435}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2139164}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1171658, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=21124622, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:26 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=21.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:26 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1552947}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1569991, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=21.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:38:26 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1867436}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG command:56 - Command execution completed -2016-05-03 12:38:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG command:56 - Command execution completed -2016-05-03 12:38:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG command:56 - Command execution completed -2016-05-03 12:38:26 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 12:38:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG command:56 - Command execution completed -2016-05-03 12:38:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG command:56 - Command execution completed -2016-05-03 12:38:26 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:38:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG command:56 - Command execution completed -2016-05-03 12:38:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:26 DEBUG command:56 - Command execution completed -2016-05-03 12:38:26 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:38:26 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG query:56 - Query completed -2016-05-03 12:38:27 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 12:38:27 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 12:38:27 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 12:38:27 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG update:56 - Update completed -2016-05-03 12:38:27 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1867436}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG query:56 - Query completed -2016-05-03 12:38:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:38:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:38:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:38:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:38:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:38:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:38:27 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:38:27 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 12:38:27 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 12:38:27 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 12:38:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:38:27 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:38:27 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 12:38:27 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 12:38:27 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 12:38:27 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:38:27 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 12:38:27 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 12:38:27 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:38:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:38:27 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:38:27 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:38:27 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:38:27 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:38:27 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:38:27 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:27 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:27 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:27 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc10b54e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@77734daf, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@32f1596d, socketFactory=javax.net.DefaultSocketFactory@3b494fc1, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:38:27 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:38:27 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:38:27 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:256651}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1177895, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:27 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:38:27 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:27 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:27 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1867437}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2139165}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1185941, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1482164, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:27 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:38:27 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1552948}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1174467, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 12:38:27 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1867438}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867438}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG command:56 - Command execution completed -2016-05-03 12:38:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867438}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG command:56 - Command execution completed -2016-05-03 12:38:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867438}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG command:56 - Command execution completed -2016-05-03 12:38:27 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:38:27 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:38:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867438}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG command:56 - Command execution completed -2016-05-03 12:38:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867438}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG command:56 - Command execution completed -2016-05-03 12:38:27 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:38:27 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1867438}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG query:56 - Query completed -2016-05-03 12:38:27 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 12:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2139165} -2016-05-03 12:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1552948} -2016-05-03 12:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:256651} -2016-05-03 12:38:27 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1867438}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1867438} -2016-05-03 12:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1867437} -2016-05-03 12:38:27 INFO MongoIO:508 - Mongo has been closed -2016-05-03 12:38:27 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:38:27 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:38:27 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:38:27 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:38:27 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 12:38:27 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:38:27 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 12:38:27 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 12:38:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=21.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:38:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=21.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:38:36 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:38:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=17.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:38:36 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:38:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=17.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:38:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:38:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=17.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:38:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:38:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=17.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:38:37 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2139164} -2016-05-03 12:38:37 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1867436}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:38:37 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1867436} -2016-05-03 12:38:37 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:256650} -2016-05-03 12:38:37 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1552947} -2016-05-03 12:38:37 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1867435} -2016-05-03 12:38:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:38:57 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:39:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 12:39:19 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 12:39:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:39:19 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 12:39:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:39:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:39:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:39:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:39:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:39:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:39:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:39:19 DEBUG ServiceEngine:193 - get() - start -2016-05-03 12:39:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:39:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:39:19 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 12:39:19 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 12:39:19 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:39:19 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 12:39:19 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 12:39:19 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:39:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:39:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:39:19 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:39:19 DEBUG Operation:173 - get(String) - start -2016-05-03 12:39:19 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:39:19 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:39:19 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:39:19 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:39:19 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:39:19 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:39:19 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc10b54e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@77734daf, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@32f1596d, socketFactory=javax.net.DefaultSocketFactory@3b494fc1, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:39:19 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:39:19 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:256661}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1867446}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1298260, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:39:19 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:39:19 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1176968, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:39:19 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:39:19 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2139174}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=883484, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1552958}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1203956, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1867447}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 12:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:39:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG query:56 - Query completed -2016-05-03 12:39:19 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 12:39:19 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 12:39:19 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 12:39:19 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG update:56 - Update completed -2016-05-03 12:39:19 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:25, serverValue:1867447}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG query:56 - Query completed -2016-05-03 12:39:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:39:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:39:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:39:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:39:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:39:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:39:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:39:19 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 12:39:19 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 12:39:19 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 12:39:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:39:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:39:19 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 12:39:19 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 12:39:19 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 12:39:19 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:39:19 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 12:39:19 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 12:39:19 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:39:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:39:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:39:19 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:39:19 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:39:19 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:39:19 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:39:19 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:39:19 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:39:19 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc10b54e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@77734daf, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@32f1596d, socketFactory=javax.net.DefaultSocketFactory@3b494fc1, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:39:19 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:39:19 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1867449}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1307722, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:39:19 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:39:19 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:39:19 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:39:19 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:256662}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2139175}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1110629, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1420574, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1552959}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1200113, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 12:39:19 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1867450}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1867450}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1867450}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1867450}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:39:19 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1867450}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1867450}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG command:56 - Command execution completed -2016-05-03 12:39:19 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:39:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1867450}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:39:19 DEBUG query:56 - Query completed -2016-05-03 12:39:19 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2139175} -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:256662} -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1552959} -2016-05-03 12:39:19 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1867450}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1867450} -2016-05-03 12:39:19 INFO MongoIO:508 - Mongo has been closed -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1867449} -2016-05-03 12:39:19 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:39:19 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:39:19 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:39:19 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:39:19 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 12:39:19 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:39:19 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 12:39:19 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2139174} -2016-05-03 12:39:19 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1867447}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1552958} -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:256661} -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1867447} -2016-05-03 12:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1867446} -2016-05-03 12:39:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:39:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:46:08 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 12:46:08 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 12:46:08 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 12:46:08 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:46:08 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:46:08 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:46:08 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:46:08 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@333d3266 -2016-05-03 12:46:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:08 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:46:08 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:46:08 DEBUG TemplateModel:83 - 2016-05-03 12:46:08, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:46:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:46:08 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 12:46:10 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:46:10 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:46:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:46:10 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:46:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:10 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:46:10 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:46:10 DEBUG TemplateModel:83 - 2016-05-03 12:46:10, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:46:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:46:10 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:46:10 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 139 ms -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 12:46:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 12:46:10 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 12:46:10 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:46:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:46:10 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@317813f -2016-05-03 12:46:10 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6456ac53 -2016-05-03 12:46:10 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@62647dc3 -2016-05-03 12:46:10 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@3c1460a2 -2016-05-03 12:46:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 100 ms -2016-05-03 12:46:10 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 12:46:10 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 12:46:10 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 12:46:10 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 12:46:10 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 12:46:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:46:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 12:46:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 17 ms -2016-05-03 12:46:10 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 12:46:10 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:46:10 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 12:46:10 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:46:11 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:46:11 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:46:11 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:46:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:46:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:46:11 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 12:46:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:11 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 12:46:11 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 12:46:11 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 12:46:11 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 12:46:11 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 12:46:11 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 12:46:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 12:46:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:46:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 12:46:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 20 ms -2016-05-03 12:46:11 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 12:46:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:11 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 12:46:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:11 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 12:46:11 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:46:11 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:46:11 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 12:46:11 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:46:11 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:46:11 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 12:46:11 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 12:46:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:11 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:46:11 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:46:11 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 12:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 12:46:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 12:46:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 12:46:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 12:46:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:13 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:46:13 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:46:13 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:46:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:46:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:13 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 12:46:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:46:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:13 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 12:46:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:13 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 12:46:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 114 msc 0 sec -2016-05-03 12:46:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:46:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:13 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 12:46:13 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 12:46:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:13 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 12:46:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 113 msc 0 sec -2016-05-03 12:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:46:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:46:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 41 ms -2016-05-03 12:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:46:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:46:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 12:46:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 12:46:14 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 12:46:14 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 12:46:14 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 12:46:14 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 12:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:46:14 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 12:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:46:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:46:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:46:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 12:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 377 msc 0 sec -2016-05-03 12:46:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:46:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:46:17 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:46:17 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:46:17 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:46:17 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:46:17 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:46:17 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:46:17 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 12:46:17 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:46:17 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:46:17 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:46:17 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:46:17 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:46:17 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:46:17 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:46:17 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:46:17 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:46:17 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:46:17 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:46:17 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:46:17 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:46:17 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:46:17 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:46:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:46:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:46:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:17 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:46:17 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:46:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:17 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:46:17 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:46:17 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:46:17 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:46:17 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:46:17 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:46:17 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:46:17 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:46:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:46:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:46:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:17 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:46:17 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:46:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:46:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:46:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:46:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:46:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:46:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:46:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:46:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:46:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:46:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:46:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:46:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 207 msc 0 sec -2016-05-03 12:46:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:46:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:46:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:46:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:46:21 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 12:46:21 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:46:21 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:46:22 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM - BIONYM - An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - - - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:46:22 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 12:46:22 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:46:22 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 12:46:22 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:46:22 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:46:22 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 12:46:22 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:46:22 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:46:22 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:46:22 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 12:46:22 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 12:46:22 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 12:46:22 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 12:46:22 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 12:46:22 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 12:46:22 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 12:46:22 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 12:46:22 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 12:46:22 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 12:46:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:46:22 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:46:22 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 12:46:22 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:46:22 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 12:46:22 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:46:22 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 12:46:22 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:22 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:46:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:46:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:46:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:46:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:46:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:46:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:46:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:46:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:46:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:46:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:46:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:46:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:46:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 171 msc 0 sec -2016-05-03 12:46:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:46:51 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:46:51 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:46:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:46:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:51 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:46:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:46:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:46:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:46:51 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 12:46:51 DEBUG ServiceEngine:306 - get() - start -2016-05-03 12:46:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:46:51 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:46:51 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 12:46:51 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 12:46:51 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:46:51 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 12:46:51 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 12:46:51 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:46:51 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 12:46:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:46:51 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:46:51 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:46:51 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:46:51 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:46:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:46:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:46:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:46:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:46:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:46:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:46:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:51 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:51 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:51 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@768f43c9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6a9106a6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@574bb2f2, socketFactory=javax.net.DefaultSocketFactory@2ad15aa4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:46:51 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:46:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:46:51 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:46:51 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 12:46:51 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 12:46:51 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:46:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 72 msc 0 sec -2016-05-03 12:46:51 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 12:46:51 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 12:46:51 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:256761}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1867558}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3328683, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:46:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1469776, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:51 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2139268}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=967205, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:51 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1867559}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1553051}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=6321998, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.3 ms, state=CONNECTED}] -2016-05-03 12:46:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867559}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG command:56 - Command execution completed -2016-05-03 12:46:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867559}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG command:56 - Command execution completed -2016-05-03 12:46:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867559}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG command:56 - Command execution completed -2016-05-03 12:46:51 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 12:46:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867559}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG command:56 - Command execution completed -2016-05-03 12:46:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1867559}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:51 DEBUG command:56 - Command execution completed -2016-05-03 12:46:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1867559}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:52 DEBUG query:56 - Query completed -2016-05-03 12:46:52 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 12:46:52 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2139268} -2016-05-03 12:46:52 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1553051} -2016-05-03 12:46:52 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1867559}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:46:52 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:256761} -2016-05-03 12:46:52 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1867559} -2016-05-03 12:46:52 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1867558} -2016-05-03 12:46:52 INFO MongoIO:508 - Mongo has been closed -2016-05-03 12:46:52 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 12:46:52 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 12:46:52 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 12:46:53 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:46:53 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:46:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:46:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:46:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:53 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:46:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:46:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:46:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:46:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:53 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:46:53 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:46:53 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 12:46:53 DEBUG ServiceEngine:306 - get() - start -2016-05-03 12:46:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:46:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:46:53 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 12:46:53 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 12:46:53 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:46:53 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 12:46:53 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 12:46:53 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:46:53 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 12:46:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:46:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:46:53 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:46:53 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:46:53 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:46:53 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:46:53 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:53 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:53 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:53 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@768f43c9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6a9106a6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@574bb2f2, socketFactory=javax.net.DefaultSocketFactory@2ad15aa4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:46:53 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:46:53 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:46:53 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1867562}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1414191, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:53 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:46:53 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:53 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:53 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:53 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:256762}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2139269}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1802738, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1293840, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:53 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1553052}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1376118, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 12:46:53 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1867563}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867563}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG command:56 - Command execution completed -2016-05-03 12:46:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867563}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:46:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:46:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:46:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:53 DEBUG command:56 - Command execution completed -2016-05-03 12:46:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867563}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG command:56 - Command execution completed -2016-05-03 12:46:53 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 12:46:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867563}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG command:56 - Command execution completed -2016-05-03 12:46:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1867563}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 DEBUG command:56 - Command execution completed -2016-05-03 12:46:53 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1867563}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:53 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:46:53 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 12:46:53 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 12:46:53 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 12:46:53 INFO WorkspaceExplorerServiceImpl:188 - end time - 42 msc 0 sec -2016-05-03 12:46:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 12:46:53 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 12:46:53 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:46:53 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 12:46:53 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 12:46:54 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:46:54 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:46:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:46:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:46:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:54 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:46:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:46:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:54 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:46:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:46:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:46:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:54 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:46:54 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:46:54 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:46:54 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 12:46:54 DEBUG query:56 - Query completed -2016-05-03 12:46:54 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 12:46:54 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2139269} -2016-05-03 12:46:54 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:256762} -2016-05-03 12:46:54 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1867563}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:46:54 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1553052} -2016-05-03 12:46:54 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1867563} -2016-05-03 12:46:54 INFO MongoIO:508 - Mongo has been closed -2016-05-03 12:46:54 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 12:46:54 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1867562} -2016-05-03 12:46:54 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 12:46:54 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 12:46:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:46:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:46:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:46:55 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 12:46:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:55 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:46:55 DEBUG ServiceEngine:193 - get() - start -2016-05-03 12:46:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:46:55 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:46:55 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 12:46:55 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 12:46:55 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:46:55 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 12:46:55 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 12:46:55 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:46:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:46:55 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:46:55 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:46:55 DEBUG Operation:173 - get(String) - start -2016-05-03 12:46:55 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:46:55 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:46:55 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:46:55 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:46:55 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:55 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:55 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:55 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@768f43c9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6a9106a6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@574bb2f2, socketFactory=javax.net.DefaultSocketFactory@2ad15aa4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:46:55 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:46:55 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:46:55 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:256763}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1292455, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:55 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:46:55 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:55 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:55 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1867564}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1440531, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:55 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2139270}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=931505, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:55 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1553054}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1502947, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 12:46:55 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1867565}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG command:56 - Command execution completed -2016-05-03 12:46:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG command:56 - Command execution completed -2016-05-03 12:46:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG command:56 - Command execution completed -2016-05-03 12:46:55 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 12:46:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG command:56 - Command execution completed -2016-05-03 12:46:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG command:56 - Command execution completed -2016-05-03 12:46:55 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:46:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG command:56 - Command execution completed -2016-05-03 12:46:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG command:56 - Command execution completed -2016-05-03 12:46:55 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:46:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG query:56 - Query completed -2016-05-03 12:46:55 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 12:46:55 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 12:46:55 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 12:46:55 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:55 DEBUG update:56 - Update completed -2016-05-03 12:46:55 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1867565}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG query:56 - Query completed -2016-05-03 12:46:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:46:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:46:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:46:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:46:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:46:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:46:56 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 12:46:56 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 12:46:56 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 12:46:56 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 12:46:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:46:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:46:56 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 12:46:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 12:46:56 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 12:46:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 12:46:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 12:46:56 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 12:46:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 12:46:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 12:46:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 12:46:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 12:46:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 12:46:56 DEBUG MongoIO:77 - open mongo connection -2016-05-03 12:46:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 12:46:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@768f43c9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6a9106a6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@574bb2f2, socketFactory=javax.net.DefaultSocketFactory@2ad15aa4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 12:46:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 12:46:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 12:46:56 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:256764}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1324420, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 12:46:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 12:46:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:56 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1867566}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2139271}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2317475, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3319255, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 12:46:56 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1553055}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1162090, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 12:46:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 12:46:56 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1867567}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867567}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG command:56 - Command execution completed -2016-05-03 12:46:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867567}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG command:56 - Command execution completed -2016-05-03 12:46:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867567}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG command:56 - Command execution completed -2016-05-03 12:46:56 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:46:56 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:46:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867567}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG command:56 - Command execution completed -2016-05-03 12:46:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1867567}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG command:56 - Command execution completed -2016-05-03 12:46:56 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:46:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1867567}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:46:56 DEBUG query:56 - Query completed -2016-05-03 12:46:56 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 12:46:56 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2139271} -2016-05-03 12:46:56 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1867567}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:46:56 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1553055} -2016-05-03 12:46:56 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:256764} -2016-05-03 12:46:56 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1867567} -2016-05-03 12:46:56 INFO MongoIO:508 - Mongo has been closed -2016-05-03 12:46:56 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1867566} -2016-05-03 12:46:56 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 12:46:56 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:46:56 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:46:56 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:46:56 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 12:46:56 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 12:46:56 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 12:46:56 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 12:47:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:47:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:47:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:47:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 12:47:05 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:47:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:47:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 12:47:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 12:47:05 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:47:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:47:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:47:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:47:15 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:47:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:47:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:47:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:47:15 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:47:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:47:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:47:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:47:25 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:47:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:47:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:47:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 12:47:25 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:47:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:47:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:47:35 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:47:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:47:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:47:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 12:47:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:47:45 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 12:47:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 12:47:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:47:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:47:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 12:47:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 12:47:49 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2139270} -2016-05-03 12:47:49 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1867565}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 12:47:49 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:256763} -2016-05-03 12:47:49 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1553054} -2016-05-03 12:47:49 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1867565} -2016-05-03 12:47:49 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1867564} -2016-05-03 12:49:24 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 12:49:24 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 12:49:24 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 12:49:24 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:49:24 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:49:24 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:49:24 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:49:24 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@79a174f8 -2016-05-03 12:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:49:24 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:49:24 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:49:24 DEBUG TemplateModel:83 - 2016-05-03 12:49:24, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:49:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:49:24 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 12:49:25 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 12:49:25 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 12:49:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:49:25 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 12:49:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:49:25 INFO ASLSession:352 - Logging the entrance -2016-05-03 12:49:25 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 12:49:25 DEBUG TemplateModel:83 - 2016-05-03 12:49:25, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 12:49:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:49:26 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:49:26 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 129 ms -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 12:49:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 12:49:26 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 12:49:26 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:49:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 12:49:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@8fa7ade -2016-05-03 12:49:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@ddecc3b -2016-05-03 12:49:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@7c9ffb44 -2016-05-03 12:49:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@36ff2e3c -2016-05-03 12:49:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-05-03 12:49:26 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 12:49:26 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 12:49:26 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 12:49:26 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 12:49:26 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 12:49:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:49:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:49:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 12:49:26 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:49:26 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:49:26 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:49:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:49:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:49:26 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:49:26 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 12:49:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:26 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 12:49:26 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 12:49:26 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 12:49:26 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 12:49:26 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 12:49:26 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 12:49:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 12:49:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:49:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 12:49:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 46 ms -2016-05-03 12:49:27 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 12:49:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:49:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:27 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 12:49:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:27 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 12:49:27 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:49:27 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:49:27 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 12:49:27 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 12:49:27 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 12:49:27 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 12:49:27 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 12:49:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:27 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 12:49:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 12:49:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 1016 ms -2016-05-03 12:49:27 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 12:49:27 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:27 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 12:49:27 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:49:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:27 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:49:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 12:49:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:49:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 12:49:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 12:49:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 12:49:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:49:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:49:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:28 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 12:49:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:28 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:28 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 12:49:28 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 12:49:28 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 12:49:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 176 msc 0 sec -2016-05-03 12:49:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:29 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:49:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:49:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:29 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 12:49:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:49:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:49:29 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 12:49:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:49:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:49:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 12:49:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 140 msc 0 sec -2016-05-03 12:49:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 12:49:29 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 12:49:29 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 12:49:29 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 12:49:29 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:49:29 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:49:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 12:49:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 12:49:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 12:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 347 msc 0 sec -2016-05-03 12:49:34 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 12:49:34 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 12:49:34 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 12:49:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:49:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:49:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:49:34 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 12:49:34 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:34 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:49:35 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:49:35 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:49:35 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:49:35 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 12:49:35 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:49:35 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:49:35 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:35 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 12:49:35 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:49:35 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:49:35 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:49:35 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:49:35 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:49:35 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:49:35 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:49:35 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 12:49:35 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 12:49:35 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:49:35 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:49:35 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 12:49:35 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 12:49:35 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:35 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:49:35 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 12:49:35 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:35 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:35 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:49:35 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:49:35 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:49:35 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:49:35 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 12:49:35 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 12:49:35 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:49:35 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:49:35 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:49:35 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 12:49:35 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:35 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:49:35 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:49:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:49:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:49:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:49:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:49:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:49:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:49:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:49:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:49:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:49:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:49:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:49:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:49:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:49:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:49:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:49:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 188 msc 0 sec -2016-05-03 12:49:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:49:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:49:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:49:38 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 12:49:38 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:38 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:49:39 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN - BIOCLIMATE_HSPEN - A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes - - - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:49:39 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:49:39 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:49:39 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 12:49:39 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:49:39 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:49:39 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:39 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 12:49:39 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:49:39 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:49:39 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:49:39 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:49:39 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:49:39 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 12:49:39 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 12:49:39 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 12:49:39 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 12:49:39 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 12:49:39 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 12:49:39 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 12:49:39 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 12:49:39 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:39 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:49:39 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 12:49:39 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:39 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:39 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 12:49:39 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 12:49:39 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 12:49:39 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 12:49:39 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 12:49:39 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 12:49:39 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 12:49:39 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 12:49:39 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 12:49:39 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 12:49:39 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:39 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 12:49:39 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:49:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:49:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:49:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:49:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:49:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:49:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:49:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:49:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:49:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:49:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 12:49:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 12:49:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:49:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:49:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:49:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:49:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:49:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:49:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:49:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:49:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 187 msc 0 sec -2016-05-03 12:49:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:49:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 12:49:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:49:41 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 12:49:41 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:49:41 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM - BIONYM - An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - - - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:49:41 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 12:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 12:49:42 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:49:42 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 12:49:42 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:49:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:42 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 12:49:42 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 12:49:42 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 12:49:42 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 12:49:42 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 12:49:42 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 12:49:42 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 12:49:42 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 12:49:42 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 12:49:42 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 12:49:42 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 12:49:42 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 12:49:42 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 12:49:42 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 12:49:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:42 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 12:49:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 12:49:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:42 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 12:49:42 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:49:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 12:49:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:42 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 12:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:49:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:49:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:49:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:49:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:49:42 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:49:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:49:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 12:49:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 12:49:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 12:49:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 12:49:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 12:49:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 12:49:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 12:49:42 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 12:49:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 12:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 12:49:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 12:49:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 12:49:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 12:49:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 12:49:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:49:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 12:49:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 12:49:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 12:49:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 175 msc 0 sec -2016-05-03 12:49:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 12:49:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 12:49:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 12:49:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 12:49:50 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL -2016-05-03 12:49:50 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:50 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 12:49:51 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL - BIONYM_LOCAL - A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - SpeciesAuthorName - The scientific name of the species, possibly with authorship - Name of the parameter: SpeciesAuthorName. The scientific name of the species, possibly with authorship - - - - Gadus morhua (Linnaeus, 1758) - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 12:49:51 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - SpeciesAuthorName - The scientific name of the species, possibly with authorship - Name of the parameter: SpeciesAuthorName. The scientific name of the species, possibly with authorship - - - - Gadus morhua (Linnaeus, 1758) - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 12:49:51 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 12:49:51 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 12:49:51 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->SpeciesAuthorName is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: Gadus morhua (Linnaeus, 1758) -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The scientific name of the species, possibly with authorship -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:SpeciesAuthorName -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=Gadus morhua (Linnaeus, 1758), value=null, name=SpeciesAuthorName, description=The scientific name of the species, possibly with authorship [Min N. of Entries:1; Max N. of Entries:1; default:Gadus morhua (Linnaeus, 1758)], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 12:49:51 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 12:49:51 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 12:49:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 12:49:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 12:49:51 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 12:49:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 12:49:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 12:49:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 12:49:51 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 12:49:51 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue=Gadus morhua (Linnaeus, 1758), value=null, name=SpeciesAuthorName, description=The scientific name of the species, possibly with authorship [Min N. of Entries:1; Max N. of Entries:1; default:Gadus morhua (Linnaeus, 1758)], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 12:50:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 12:50:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 12:51:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 12:51:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:00:08 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 13:00:08 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 13:00:08 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 13:00:08 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 13:00:08 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 13:00:08 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:00:08 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 13:00:08 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@75156aa6 -2016-05-03 13:00:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:08 INFO ASLSession:352 - Logging the entrance -2016-05-03 13:00:08 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 13:00:08 DEBUG TemplateModel:83 - 2016-05-03 13:00:08, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 13:00:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 13:00:08 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 13:00:10 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 13:00:10 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 13:00:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:10 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 13:00:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:10 INFO ASLSession:352 - Logging the entrance -2016-05-03 13:00:10 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 13:00:10 DEBUG TemplateModel:83 - 2016-05-03 13:00:10, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 13:00:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 13:00:10 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 13:00:10 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 125 ms -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 13:00:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 13:00:10 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 13:00:10 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 13:00:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 13:00:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2fa6805b -2016-05-03 13:00:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@22ebe1a2 -2016-05-03 13:00:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@2ae570e4 -2016-05-03 13:00:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@37560ef0 -2016-05-03 13:00:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 96 ms -2016-05-03 13:00:11 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 13:00:11 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 13:00:11 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 13:00:11 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 13:00:11 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 13:00:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 13:00:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 13:00:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-03 13:00:11 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 13:00:11 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 13:00:11 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 13:00:11 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 13:00:11 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 13:00:11 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 13:00:11 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 13:00:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:00:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 13:00:11 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 13:00:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:11 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 13:00:11 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 13:00:11 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 13:00:11 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 13:00:11 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 13:00:11 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 13:00:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 13:00:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 13:00:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 13:00:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 80 ms -2016-05-03 13:00:11 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 13:00:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:11 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 13:00:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:11 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 13:00:12 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 13:00:12 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 13:00:12 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 13:00:12 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 13:00:12 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 13:00:12 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:12 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 13:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 13:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 13:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 13:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 13:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 13:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 13:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 13:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:13 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 13:00:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:13 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 13:00:13 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 13:00:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 124 msc 0 sec -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:13 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 13:00:13 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 13:00:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:13 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 13:00:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 13:00:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 13:00:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 13:00:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 13:00:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 202 msc 0 sec -2016-05-03 13:00:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 13:00:13 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 13:00:13 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 13:00:13 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 13:00:13 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 13:00:13 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 13:00:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 13:00:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 13:00:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 13:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 371 msc 0 sec -2016-05-03 13:00:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 13:00:18 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 13:00:23 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 13:00:23 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 13:00:23 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:00:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 13:00:23 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 13:00:23 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 13:00:23 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 13:00:23 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 13:00:23 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 13:00:23 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 13:00:23 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 13:00:23 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 13:00:23 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 13:00:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 13:00:23 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 13:00:23 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 13:00:23 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 13:00:23 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 13:00:23 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 13:00:23 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 13:00:23 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 13:00:23 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 13:00:23 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 13:00:23 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 13:00:23 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 13:00:23 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 13:00:23 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 13:00:23 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 13:00:23 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 13:00:23 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 13:00:23 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 13:00:23 DEBUG WPS2SM:92 - WPS type: -2016-05-03 13:00:23 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 13:00:23 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 13:00:23 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 13:00:23 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 13:00:23 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 13:00:23 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 13:00:23 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 13:00:23 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 13:00:23 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 13:00:23 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 13:00:23 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 13:00:23 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 13:00:23 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 13:00:23 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:23 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:00:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:23 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:00:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:00:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:00:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:24 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:00:24 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:00:24 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:00:24 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:00:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:24 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:00:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:24 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:00:24 INFO WorkspaceExplorerServiceImpl:142 - end time - 189 msc 0 sec -2016-05-03 13:00:24 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:00:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:00:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:00:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:00:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:43 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:00:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:00:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:00:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 224 msc 0 sec -2016-05-03 13:00:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:00:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:00:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 164 msc 0 sec -2016-05-03 13:00:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:00:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 146 msc 0 sec -2016-05-03 13:00:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:00:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 160 msc 0 sec -2016-05-03 13:00:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:00:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:00:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:00:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:00:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:00:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:00:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:00:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:00:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:00:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:00:45 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:00:45 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:00:45 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:00:45 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:00:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:45 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:00:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:00:45 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:00:45 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 13:00:45 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-03 13:01:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:01:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 13:01:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:01:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:01:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:01:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 148 msc 0 sec -2016-05-03 13:01:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:01:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 164 msc 0 sec -2016-05-03 13:01:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:01:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 142 msc 0 sec -2016-05-03 13:01:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 13:01:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 13:01:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 13:01:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:01:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:01:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 13:01:03 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 13:01:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 13:01:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 135 msc 0 sec -2016-05-03 13:01:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 13:01:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:01:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:01:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:01:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:02:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:02:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:03:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:03:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:04:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:05:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:05:38 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:06:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:07:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:07:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:08:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:08:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:09:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:10:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:10:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:11:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:11:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:12:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:12:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:12:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:12:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:13:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:13:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:14:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:14:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:15:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:15:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:16:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:16:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:17:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:17:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:18:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:18:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:19:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:20:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:21:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:21:13 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:22:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 13:22:08 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 13:23:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:23:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:23:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:23:58 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:24:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 13:24:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 13:25:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:25:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:26:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 13:26:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 13:27:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 13:27:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:28:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 13:28:33 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 13:29:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 13:29:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 13:30:23 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 13:30:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 13:30:23 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 13:30:23 WARN SessionCheckerServiceImpl:80 - Scope is null at Tue May 03 13:30:23 CEST 2016 -2016-05-03 13:30:23 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:19:57 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 14:19:57 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 14:19:57 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 14:19:57 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:19:57 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:19:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:19:57 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:19:57 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@f1126aa -2016-05-03 14:19:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:19:57 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:19:57 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:19:57 DEBUG TemplateModel:83 - 2016-05-03 14:19:57, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:19:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:19:57 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 14:19:59 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:19:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:19:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:19:59 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:19:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:19:59 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:19:59 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:19:59 DEBUG TemplateModel:83 - 2016-05-03 14:19:59, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:19:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:19:59 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:19:59 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 126 ms -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 14:19:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 14:19:59 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 14:19:59 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:19:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:19:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@22ebe1a2 -2016-05-03 14:19:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@2ae570e4 -2016-05-03 14:19:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@72eecaf1 -2016-05-03 14:19:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@102a1872 -2016-05-03 14:19:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 102 ms -2016-05-03 14:19:59 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 14:20:00 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 14:20:00 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 14:20:00 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 14:20:00 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 14:20:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:20:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 14:20:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 27 ms -2016-05-03 14:20:00 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 14:20:00 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:00 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 14:20:00 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:20:00 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 14:20:00 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 14:20:00 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 14:20:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:00 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:20:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:20:00 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 14:20:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:00 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 14:20:00 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 14:20:00 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 14:20:00 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 14:20:00 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 14:20:00 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 14:20:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 14:20:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:20:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 14:20:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 76 ms -2016-05-03 14:20:00 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 14:20:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:00 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 14:20:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:00 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 14:20:01 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:01 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 14:20:01 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:20:01 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:20:01 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 14:20:01 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:20:01 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:20:01 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 14:20:01 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 14:20:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:02 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 14:20:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 14:20:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:02 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:20:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 14:20:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:02 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:20:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 14:20:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:02 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:20:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 14:20:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:03 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 14:20:03 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 14:20:03 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 14:20:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:20:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:03 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 14:20:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:20:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:03 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 14:20:03 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 14:20:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 118 msc 0 sec -2016-05-03 14:20:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:03 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 14:20:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:20:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:03 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 14:20:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:04 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 14:20:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 14:20:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:20:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 14:20:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 116 msc 0 sec -2016-05-03 14:20:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 37 ms -2016-05-03 14:20:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 14:20:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:20:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 14:20:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 14:20:04 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 14:20:04 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 14:20:04 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 14:20:04 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 14:20:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 14:20:04 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 14:20:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 14:20:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:20:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 14:20:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-03 14:20:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 14:20:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 14:20:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 14:20:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 342 msc 0 sec -2016-05-03 14:20:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:20:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:20:06 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-03 14:20:06 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:06 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:20:06 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:20:06 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:20:06 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:20:06 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-03 14:20:06 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-03 14:20:06 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-03 14:20:07 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-03 14:20:07 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:20:07 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 14:20:07 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:20:07 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:07 DEBUG WPS2SM:324 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-03 14:20:07 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:20:07 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:20:07 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:20:07 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:20:07 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:20:07 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-03 14:20:07 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:07 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:20:07 DEBUG WPS2SM:299 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-03 14:20:07 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:07 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:07 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:20:07 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:20:07 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:20:07 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-03 14:20:07 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-03 14:20:07 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 14:20:07 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:20:07 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-03 14:20:07 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:20:07 DEBUG WPS2SM:338 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-03 14:20:07 DEBUG WPS2SM:339 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-03 14:20:07 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:07 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:20:07 DEBUG WPS2SM:299 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-03 14:20:07 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:07 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:07 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-03 14:20:07 DEBUG WPS2SM:338 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-03 14:20:07 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-03 14:20:07 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:07 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-03 14:20:07 DEBUG WPS2SM:299 - Conversion to SM Type->epsilon is a Literal Input -2016-05-03 14:20:07 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:07 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:20:07 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:20:07 DEBUG WPS2SM:338 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-03 14:20:07 DEBUG WPS2SM:339 - Conversion to SM Type->Name:epsilon -2016-05-03 14:20:07 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:07 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:20:07 DEBUG WPS2SM:299 - Conversion to SM Type->min_points is a Literal Input -2016-05-03 14:20:07 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:07 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:20:07 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-03 14:20:07 DEBUG WPS2SM:338 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-03 14:20:07 DEBUG WPS2SM:339 - Conversion to SM Type->Name:min_points -2016-05-03 14:20:07 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:07 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-03 14:20:07 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:20:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:20:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:20:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:20:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:20:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:20:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:20:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:20:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:20:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:20:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 210 msc 0 sec -2016-05-03 14:20:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:20:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:20:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:20:12 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS -2016-05-03 14:20:12 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:12 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:20:13 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS - KMEANS - A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - k - expected Number of Clusters - Name of the parameter: k. expected Number of Clusters - - - - 3 - - - - max_runs - max runs of the clustering procedure - Name of the parameter: max_runs. max runs of the clustering procedure - - - - 10 - - - - max_optimization_steps - max number of internal optimization steps - Name of the parameter: max_optimization_steps. max number of internal optimization steps - - - - 5 - - - - min_points - number of points which define an outlier set - Name of the parameter: min_points. number of points which define an outlier set - - - - 2 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:20:13 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:20:13 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:20:13 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-03 14:20:13 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-03 14:20:13 DEBUG SClient4WPS:300 - WPSClient->Input: - k - expected Number of Clusters - Name of the parameter: k. expected Number of Clusters - - - - 3 - - -2016-05-03 14:20:13 DEBUG SClient4WPS:300 - WPSClient->Input: - max_runs - max runs of the clustering procedure - Name of the parameter: max_runs. max runs of the clustering procedure - - - - 10 - - -2016-05-03 14:20:13 DEBUG SClient4WPS:300 - WPSClient->Input: - max_optimization_steps - max number of internal optimization steps - Name of the parameter: max_optimization_steps. max number of internal optimization steps - - - - 5 - - -2016-05-03 14:20:13 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - number of points which define an outlier set - Name of the parameter: min_points. number of points which define an outlier set - - - - 2 - - -2016-05-03 14:20:13 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:20:13 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 14:20:13 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:20:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:13 DEBUG WPS2SM:324 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-03 14:20:13 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:20:13 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:20:13 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:20:13 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:20:13 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:20:13 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-03 14:20:13 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:13 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:20:13 DEBUG WPS2SM:299 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-03 14:20:13 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:13 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:20:13 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:20:13 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:20:13 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-03 14:20:13 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-03 14:20:13 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 14:20:13 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:20:13 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-03 14:20:13 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:20:13 DEBUG WPS2SM:338 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-03 14:20:13 DEBUG WPS2SM:339 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-03 14:20:13 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:13 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:20:13 DEBUG WPS2SM:299 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-03 14:20:13 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:13 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-03 14:20:13 DEBUG WPS2SM:338 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-03 14:20:13 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-03 14:20:13 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-03 14:20:13 DEBUG WPS2SM:299 - Conversion to SM Type->k is a Literal Input -2016-05-03 14:20:13 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:20:13 DEBUG WPS2SM:100 - Guessed default value: 3 -2016-05-03 14:20:13 DEBUG WPS2SM:338 - Conversion to SM Type->Title:expected Number of Clusters -2016-05-03 14:20:13 DEBUG WPS2SM:339 - Conversion to SM Type->Name:k -2016-05-03 14:20:13 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT] -2016-05-03 14:20:13 DEBUG WPS2SM:299 - Conversion to SM Type->max_runs is a Literal Input -2016-05-03 14:20:13 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:20:13 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:20:13 DEBUG WPS2SM:338 - Conversion to SM Type->Title:max runs of the clustering procedure -2016-05-03 14:20:13 DEBUG WPS2SM:339 - Conversion to SM Type->Name:max_runs -2016-05-03 14:20:13 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:20:13 DEBUG WPS2SM:299 - Conversion to SM Type->max_optimization_steps is a Literal Input -2016-05-03 14:20:13 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:20:13 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 14:20:13 DEBUG WPS2SM:338 - Conversion to SM Type->Title:max number of internal optimization steps -2016-05-03 14:20:13 DEBUG WPS2SM:339 - Conversion to SM Type->Name:max_optimization_steps -2016-05-03 14:20:13 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 14:20:13 DEBUG WPS2SM:299 - Conversion to SM Type->min_points is a Literal Input -2016-05-03 14:20:13 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:20:13 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-03 14:20:13 DEBUG WPS2SM:338 - Conversion to SM Type->Title:number of points which define an outlier set -2016-05-03 14:20:13 DEBUG WPS2SM:339 - Conversion to SM Type->Name:min_points -2016-05-03 14:20:13 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-03 14:20:13 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT]] -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:20:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:20:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:13 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:20:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:20:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:20:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:20:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:20:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:20:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:20:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:20:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:20:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:20:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 158 msc 0 sec -2016-05-03 14:20:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:20:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:20:18 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS -2016-05-03 14:20:18 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:20:18 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS - GENERIC_CHARTS - An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities. - - - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - TopElementsNumber - Max number of elements, with highest values, to visualize - Name of the parameter: TopElementsNumber. Max number of elements, with highest values, to visualize - - - - 10 - - - - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - - - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:20:18 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:20:18 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:20:18 DEBUG SClient4WPS:300 - WPSClient->Input: - TopElementsNumber - Max number of elements, with highest values, to visualize - Name of the parameter: TopElementsNumber. Max number of elements, with highest values, to visualize - - - - 10 - - -2016-05-03 14:20:18 DEBUG SClient4WPS:300 - WPSClient->Input: - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-03 14:20:18 DEBUG SClient4WPS:300 - WPSClient->Input: - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-03 14:20:18 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:20:18 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:20:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:18 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:20:18 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:20:18 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:20:18 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:20:18 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:20:18 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:20:18 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:20:18 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:18 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:20:18 DEBUG WPS2SM:299 - Conversion to SM Type->TopElementsNumber is a Literal Input -2016-05-03 14:20:18 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:20:18 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:20:18 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Max number of elements, with highest values, to visualize -2016-05-03 14:20:18 DEBUG WPS2SM:339 - Conversion to SM Type->Name:TopElementsNumber -2016-05-03 14:20:18 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:20:18 DEBUG WPS2SM:299 - Conversion to SM Type->Attributes is a Literal Input -2016-05-03 14:20:18 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:20:18 DEBUG WPS2SM:110 - Machter title: The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:20:18 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:20:18 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:20:18 DEBUG WPS2SM:113 - Machter start: 42 -2016-05-03 14:20:18 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 14:20:18 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:20:18 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:20:18 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:20:18 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:20:18 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Attributes -2016-05-03 14:20:18 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:18 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:20:18 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:20:18 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:20:18 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:20:18 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:20:18 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:20:18 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:20:18 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:20:18 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:20:18 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:20:18 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:20:18 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:20:18 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:20:18 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:18 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:20:18 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:20:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:20:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:20:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:20:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:20:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:20:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:20:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:20:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:20:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:20:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:20:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:20:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 14:20:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:20:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:20:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:20:28 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART -2016-05-03 14:20:28 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:28 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:20:28 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART - GEO_CHART - An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country. - - - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - Longitude - The column containing longitude decimal values [the name of a column from InputTable] - Name of the parameter: Longitude. The column containing longitude decimal values [the name of a column from InputTable] - - - - long - - - - Latitude - The column containing latitude decimal values [the name of a column from InputTable] - Name of the parameter: Latitude. The column containing latitude decimal values [the name of a column from InputTable] - - - - lat - - - - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:20:28 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:20:28 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:20:28 DEBUG SClient4WPS:300 - WPSClient->Input: - Longitude - The column containing longitude decimal values [the name of a column from InputTable] - Name of the parameter: Longitude. The column containing longitude decimal values [the name of a column from InputTable] - - - - long - - -2016-05-03 14:20:28 DEBUG SClient4WPS:300 - WPSClient->Input: - Latitude - The column containing latitude decimal values [the name of a column from InputTable] - Name of the parameter: Latitude. The column containing latitude decimal values [the name of a column from InputTable] - - - - lat - - -2016-05-03 14:20:28 DEBUG SClient4WPS:300 - WPSClient->Input: - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-03 14:20:28 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:20:28 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:20:28 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:28 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:20:28 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:20:28 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:20:28 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:20:28 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:20:28 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:20:28 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:20:28 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:28 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:20:28 DEBUG WPS2SM:299 - Conversion to SM Type->Longitude is a Literal Input -2016-05-03 14:20:28 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:28 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:28 DEBUG WPS2SM:100 - Guessed default value: long -2016-05-03 14:20:28 DEBUG WPS2SM:129 - Machter title: The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long] -2016-05-03 14:20:28 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:20:28 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:20:28 DEBUG WPS2SM:132 - Machter start: 48 -2016-05-03 14:20:28 DEBUG WPS2SM:133 - Machter end: 84 -2016-05-03 14:20:28 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:20:28 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:20:28 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing longitude decimal values [the name of a column from InputTable] -2016-05-03 14:20:28 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Longitude -2016-05-03 14:20:28 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:28 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN] -2016-05-03 14:20:28 DEBUG WPS2SM:299 - Conversion to SM Type->Latitude is a Literal Input -2016-05-03 14:20:28 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:28 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:28 DEBUG WPS2SM:100 - Guessed default value: lat -2016-05-03 14:20:28 DEBUG WPS2SM:129 - Machter title: The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat] -2016-05-03 14:20:28 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:20:28 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:20:28 DEBUG WPS2SM:132 - Machter start: 47 -2016-05-03 14:20:28 DEBUG WPS2SM:133 - Machter end: 83 -2016-05-03 14:20:28 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:20:28 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:20:28 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing latitude decimal values [the name of a column from InputTable] -2016-05-03 14:20:28 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Latitude -2016-05-03 14:20:28 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:28 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN] -2016-05-03 14:20:28 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:20:28 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:28 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:28 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:20:28 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:20:28 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:20:28 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:20:28 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:20:28 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:20:28 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:20:28 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:20:28 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:20:28 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:20:28 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:20:28 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:28 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:20:28 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN], Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:20:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:20:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:20:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:20:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:20:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:20:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:20:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:20:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:20:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 167 msc 0 sec -2016-05-03 14:20:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:20:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:20:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:20:32 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART -2016-05-03 14:20:32 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:32 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:20:32 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART - TIME_GEO_CHART - An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country. - - - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - Longitude - The column containing longitude decimal values [the name of a column from InputTable] - Name of the parameter: Longitude. The column containing longitude decimal values [the name of a column from InputTable] - - - - long - - - - Latitude - The column containing latitude decimal values [the name of a column from InputTable] - Name of the parameter: Latitude. The column containing latitude decimal values [the name of a column from InputTable] - - - - lat - - - - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - - - Time - The column containing time information [the name of a column from InputTable] - Name of the parameter: Time. The column containing time information [the name of a column from InputTable] - - - - year - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:20:32 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:20:32 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:20:32 DEBUG SClient4WPS:300 - WPSClient->Input: - Longitude - The column containing longitude decimal values [the name of a column from InputTable] - Name of the parameter: Longitude. The column containing longitude decimal values [the name of a column from InputTable] - - - - long - - -2016-05-03 14:20:32 DEBUG SClient4WPS:300 - WPSClient->Input: - Latitude - The column containing latitude decimal values [the name of a column from InputTable] - Name of the parameter: Latitude. The column containing latitude decimal values [the name of a column from InputTable] - - - - lat - - -2016-05-03 14:20:32 DEBUG SClient4WPS:300 - WPSClient->Input: - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-03 14:20:32 DEBUG SClient4WPS:300 - WPSClient->Input: - Time - The column containing time information [the name of a column from InputTable] - Name of the parameter: Time. The column containing time information [the name of a column from InputTable] - - - - year - - -2016-05-03 14:20:32 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:20:32 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:20:32 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:20:32 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:20:32 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:20:32 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:20:32 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:20:32 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:20:32 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:20:32 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:20:32 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:32 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:20:32 DEBUG WPS2SM:299 - Conversion to SM Type->Longitude is a Literal Input -2016-05-03 14:20:32 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:32 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:32 DEBUG WPS2SM:100 - Guessed default value: long -2016-05-03 14:20:32 DEBUG WPS2SM:129 - Machter title: The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long] -2016-05-03 14:20:32 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:20:32 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:20:32 DEBUG WPS2SM:132 - Machter start: 48 -2016-05-03 14:20:32 DEBUG WPS2SM:133 - Machter end: 84 -2016-05-03 14:20:32 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:20:32 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:20:32 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing longitude decimal values [the name of a column from InputTable] -2016-05-03 14:20:32 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Longitude -2016-05-03 14:20:32 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:32 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN] -2016-05-03 14:20:32 DEBUG WPS2SM:299 - Conversion to SM Type->Latitude is a Literal Input -2016-05-03 14:20:32 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:32 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:32 DEBUG WPS2SM:100 - Guessed default value: lat -2016-05-03 14:20:32 DEBUG WPS2SM:129 - Machter title: The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat] -2016-05-03 14:20:32 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:20:32 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:20:32 DEBUG WPS2SM:132 - Machter start: 47 -2016-05-03 14:20:32 DEBUG WPS2SM:133 - Machter end: 83 -2016-05-03 14:20:32 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:20:32 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:20:32 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing latitude decimal values [the name of a column from InputTable] -2016-05-03 14:20:32 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Latitude -2016-05-03 14:20:32 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:32 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN] -2016-05-03 14:20:32 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:20:32 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:32 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:32 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:20:32 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:20:32 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:20:32 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:20:32 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:20:32 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:20:32 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:20:32 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:20:32 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:20:32 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:20:32 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:20:32 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:32 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:20:32 DEBUG WPS2SM:299 - Conversion to SM Type->Time is a Literal Input -2016-05-03 14:20:32 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:20:32 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:20:32 DEBUG WPS2SM:100 - Guessed default value: year -2016-05-03 14:20:32 DEBUG WPS2SM:129 - Machter title: The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year] -2016-05-03 14:20:32 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:20:32 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:20:32 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-03 14:20:32 DEBUG WPS2SM:133 - Machter end: 76 -2016-05-03 14:20:32 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:20:32 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:20:32 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing time information [the name of a column from InputTable] -2016-05-03 14:20:32 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Time -2016-05-03 14:20:32 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:20:32 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN] -2016-05-03 14:20:32 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN], Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN]] -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:20:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:20:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:20:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:32 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:32 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:20:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:20:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:20:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:20:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:20:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:20:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:20:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:20:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:20:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:20:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:20:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:20:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:20:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:20:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:20:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:20:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:20:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:20:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:20:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 160 msc 0 sec -2016-05-03 14:20:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:20:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:20:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:23:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:23:03 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS -2016-05-03 14:23:03 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:23:03 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:23:04 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS - TIME_SERIES_CHARTS - An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed. - - - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - - - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - - - Time - The column containing time information [the name of a column from InputTable] - Name of the parameter: Time. The column containing time information [the name of a column from InputTable] - - - - year - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:23:04 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:23:04 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:23:04 DEBUG SClient4WPS:300 - WPSClient->Input: - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-03 14:23:04 DEBUG SClient4WPS:300 - WPSClient->Input: - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-03 14:23:04 DEBUG SClient4WPS:300 - WPSClient->Input: - Time - The column containing time information [the name of a column from InputTable] - Name of the parameter: Time. The column containing time information [the name of a column from InputTable] - - - - year - - -2016-05-03 14:23:04 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:23:04 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:23:04 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:23:04 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:23:04 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:23:04 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:23:04 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:23:04 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:23:04 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:23:04 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:23:04 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:04 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:23:04 DEBUG WPS2SM:299 - Conversion to SM Type->Attributes is a Literal Input -2016-05-03 14:23:04 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:04 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:04 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:04 DEBUG WPS2SM:110 - Machter title: The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:04 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:04 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:04 DEBUG WPS2SM:113 - Machter start: 42 -2016-05-03 14:23:04 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 14:23:04 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:04 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:04 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:04 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:04 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Attributes -2016-05-03 14:23:04 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:04 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:04 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:23:04 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:04 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:04 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:04 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:04 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:04 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:04 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:23:04 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:23:04 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:04 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:04 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:04 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:04 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:23:04 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:04 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:04 DEBUG WPS2SM:299 - Conversion to SM Type->Time is a Literal Input -2016-05-03 14:23:04 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:04 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:04 DEBUG WPS2SM:100 - Guessed default value: year -2016-05-03 14:23:04 DEBUG WPS2SM:129 - Machter title: The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year] -2016-05-03 14:23:04 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:04 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:04 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-03 14:23:04 DEBUG WPS2SM:133 - Machter end: 76 -2016-05-03 14:23:04 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:04 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:04 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing time information [the name of a column from InputTable] -2016-05-03 14:23:04 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Time -2016-05-03 14:23:04 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:04 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN] -2016-05-03 14:23:04 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN]] -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:23:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:23:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:23:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:23:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:23:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:23:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:23:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:23:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 143 msc 0 sec -2016-05-03 14:23:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:23:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:23:12 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART -2016-05-03 14:23:12 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:23:12 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:23:12 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:23:12 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:23:12 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:23:12 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:23:12 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:23:12 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:12 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:23:12 DEBUG WPS2SM:299 - Conversion to SM Type->Longitude is a Literal Input -2016-05-03 14:23:12 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:12 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:12 DEBUG WPS2SM:100 - Guessed default value: long -2016-05-03 14:23:12 DEBUG WPS2SM:129 - Machter title: The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long] -2016-05-03 14:23:12 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:12 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:12 DEBUG WPS2SM:132 - Machter start: 48 -2016-05-03 14:23:12 DEBUG WPS2SM:133 - Machter end: 84 -2016-05-03 14:23:12 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:12 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:12 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing longitude decimal values [the name of a column from InputTable] -2016-05-03 14:23:12 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Longitude -2016-05-03 14:23:12 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:12 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN] -2016-05-03 14:23:12 DEBUG WPS2SM:299 - Conversion to SM Type->Latitude is a Literal Input -2016-05-03 14:23:12 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:12 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:12 DEBUG WPS2SM:100 - Guessed default value: lat -2016-05-03 14:23:12 DEBUG WPS2SM:129 - Machter title: The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat] -2016-05-03 14:23:12 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:12 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:12 DEBUG WPS2SM:132 - Machter start: 47 -2016-05-03 14:23:12 DEBUG WPS2SM:133 - Machter end: 83 -2016-05-03 14:23:12 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:12 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:12 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing latitude decimal values [the name of a column from InputTable] -2016-05-03 14:23:12 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Latitude -2016-05-03 14:23:12 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:12 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN] -2016-05-03 14:23:12 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:23:12 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:12 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:12 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:12 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:12 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:12 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:12 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:23:12 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:23:12 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:12 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:12 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:12 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:12 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:23:12 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:12 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:12 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN], Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:13 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:23:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:23:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:23:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:23:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:23:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:23:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:23:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:23:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:23:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 155 msc 0 sec -2016-05-03 14:23:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:15 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:23:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:23:15 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS -2016-05-03 14:23:15 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:23:15 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:23:15 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:23:15 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:23:15 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:23:15 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:23:15 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:23:15 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:15 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:23:15 DEBUG WPS2SM:299 - Conversion to SM Type->TopElementsNumber is a Literal Input -2016-05-03 14:23:15 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:23:15 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:23:15 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Max number of elements, with highest values, to visualize -2016-05-03 14:23:15 DEBUG WPS2SM:339 - Conversion to SM Type->Name:TopElementsNumber -2016-05-03 14:23:15 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:23:15 DEBUG WPS2SM:299 - Conversion to SM Type->Attributes is a Literal Input -2016-05-03 14:23:15 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:15 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:15 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:15 DEBUG WPS2SM:110 - Machter title: The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:15 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:15 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:15 DEBUG WPS2SM:113 - Machter start: 42 -2016-05-03 14:23:15 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 14:23:15 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:15 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:15 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:15 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:15 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Attributes -2016-05-03 14:23:15 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:15 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:15 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:23:15 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:15 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:15 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:15 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:15 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:15 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:15 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:23:15 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:23:15 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:15 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:15 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:15 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:15 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:23:15 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:15 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:15 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:15 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:23:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:23:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:15 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:23:15 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:23:15 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:23:15 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:23:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:15 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:23:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:15 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:23:15 INFO WorkspaceExplorerServiceImpl:142 - end time - 144 msc 0 sec -2016-05-03 14:23:15 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:23:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:23:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:24 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:23:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:23:24 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART -2016-05-03 14:23:24 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:23:24 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:23:24 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:23:24 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:23:24 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:23:24 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:23:24 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:23:24 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:24 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:23:24 DEBUG WPS2SM:299 - Conversion to SM Type->Longitude is a Literal Input -2016-05-03 14:23:24 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:24 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:24 DEBUG WPS2SM:100 - Guessed default value: long -2016-05-03 14:23:24 DEBUG WPS2SM:129 - Machter title: The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long] -2016-05-03 14:23:24 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:24 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:24 DEBUG WPS2SM:132 - Machter start: 48 -2016-05-03 14:23:24 DEBUG WPS2SM:133 - Machter end: 84 -2016-05-03 14:23:24 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:24 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:24 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing longitude decimal values [the name of a column from InputTable] -2016-05-03 14:23:24 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Longitude -2016-05-03 14:23:24 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:24 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN] -2016-05-03 14:23:24 DEBUG WPS2SM:299 - Conversion to SM Type->Latitude is a Literal Input -2016-05-03 14:23:24 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:24 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:24 DEBUG WPS2SM:100 - Guessed default value: lat -2016-05-03 14:23:24 DEBUG WPS2SM:129 - Machter title: The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat] -2016-05-03 14:23:24 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:24 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:24 DEBUG WPS2SM:132 - Machter start: 47 -2016-05-03 14:23:24 DEBUG WPS2SM:133 - Machter end: 83 -2016-05-03 14:23:24 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:24 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:24 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing latitude decimal values [the name of a column from InputTable] -2016-05-03 14:23:24 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Latitude -2016-05-03 14:23:24 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:24 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN] -2016-05-03 14:23:24 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:23:24 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:24 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:24 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:24 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:24 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:24 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:24 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:23:24 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:23:24 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:24 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:24 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:24 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:24 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:23:24 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:24 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:24 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN], Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:25 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:23:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:25 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:23:25 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:23:25 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:23:25 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:23:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:25 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:23:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:25 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:23:25 INFO WorkspaceExplorerServiceImpl:142 - end time - 146 msc 0 sec -2016-05-03 14:23:25 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:23:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:23:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:23:37 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART -2016-05-03 14:23:37 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:23:37 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:23:37 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:23:37 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:23:37 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:23:37 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:23:37 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:23:37 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:37 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:23:37 DEBUG WPS2SM:299 - Conversion to SM Type->Longitude is a Literal Input -2016-05-03 14:23:37 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:37 DEBUG WPS2SM:100 - Guessed default value: long -2016-05-03 14:23:37 DEBUG WPS2SM:129 - Machter title: The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long] -2016-05-03 14:23:37 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:37 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:37 DEBUG WPS2SM:132 - Machter start: 48 -2016-05-03 14:23:37 DEBUG WPS2SM:133 - Machter end: 84 -2016-05-03 14:23:37 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:37 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:37 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing longitude decimal values [the name of a column from InputTable] -2016-05-03 14:23:37 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Longitude -2016-05-03 14:23:37 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN] -2016-05-03 14:23:37 DEBUG WPS2SM:299 - Conversion to SM Type->Latitude is a Literal Input -2016-05-03 14:23:37 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:37 DEBUG WPS2SM:100 - Guessed default value: lat -2016-05-03 14:23:37 DEBUG WPS2SM:129 - Machter title: The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat] -2016-05-03 14:23:37 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:37 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:37 DEBUG WPS2SM:132 - Machter start: 47 -2016-05-03 14:23:37 DEBUG WPS2SM:133 - Machter end: 83 -2016-05-03 14:23:37 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:37 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:37 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing latitude decimal values [the name of a column from InputTable] -2016-05-03 14:23:37 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Latitude -2016-05-03 14:23:37 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN] -2016-05-03 14:23:37 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:23:37 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:37 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:37 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:37 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:37 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:37 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:23:37 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:23:37 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:37 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:37 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:37 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:37 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:23:37 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:37 DEBUG WPS2SM:299 - Conversion to SM Type->Time is a Literal Input -2016-05-03 14:23:37 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:37 DEBUG WPS2SM:100 - Guessed default value: year -2016-05-03 14:23:37 DEBUG WPS2SM:129 - Machter title: The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year] -2016-05-03 14:23:37 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:37 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:37 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-03 14:23:37 DEBUG WPS2SM:133 - Machter end: 76 -2016-05-03 14:23:37 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:37 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:37 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing time information [the name of a column from InputTable] -2016-05-03 14:23:37 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Time -2016-05-03 14:23:37 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN] -2016-05-03 14:23:37 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN], Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN]] -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:38 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:38 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:23:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:38 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:23:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:38 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:23:38 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:23:38 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:23:38 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:23:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:38 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:23:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:38 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:23:38 INFO WorkspaceExplorerServiceImpl:142 - end time - 177 msc 0 sec -2016-05-03 14:23:38 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:23:41 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS -2016-05-03 14:23:41 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:23:41 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:23:41 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:23:41 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:23:41 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:23:41 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:23:41 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:23:41 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:41 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:23:41 DEBUG WPS2SM:299 - Conversion to SM Type->Attributes is a Literal Input -2016-05-03 14:23:41 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:41 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:41 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:41 DEBUG WPS2SM:110 - Machter title: The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:41 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:41 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:41 DEBUG WPS2SM:113 - Machter start: 42 -2016-05-03 14:23:41 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 14:23:41 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:41 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:41 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:41 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:41 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Attributes -2016-05-03 14:23:41 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:41 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:41 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:23:41 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:41 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:41 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:41 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:41 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:41 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:41 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:23:41 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:23:41 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:41 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:41 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:41 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:41 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:23:41 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:41 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:41 DEBUG WPS2SM:299 - Conversion to SM Type->Time is a Literal Input -2016-05-03 14:23:41 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:41 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:41 DEBUG WPS2SM:100 - Guessed default value: year -2016-05-03 14:23:41 DEBUG WPS2SM:129 - Machter title: The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year] -2016-05-03 14:23:41 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:41 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:41 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-03 14:23:41 DEBUG WPS2SM:133 - Machter end: 76 -2016-05-03 14:23:41 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:41 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:41 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing time information [the name of a column from InputTable] -2016-05-03 14:23:41 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Time -2016-05-03 14:23:41 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:41 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN] -2016-05-03 14:23:41 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN]] -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:41 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:41 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:23:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:23:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:23:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:23:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:23:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:41 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:23:41 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:23:41 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:23:41 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:23:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:41 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:23:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:41 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:23:41 INFO WorkspaceExplorerServiceImpl:142 - end time - 129 msc 0 sec -2016-05-03 14:23:41 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:54 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:23:54 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS -2016-05-03 14:23:54 DEBUG WPS2SM:324 - Conversion to SM Type->InputTable is a Complex Input -2016-05-03 14:23:54 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:23:54 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:23:54 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:23:54 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:23:54 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:23:54 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputTable -2016-05-03 14:23:54 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:54 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:23:54 DEBUG WPS2SM:299 - Conversion to SM Type->Attributes is a Literal Input -2016-05-03 14:23:54 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:54 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:54 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:54 DEBUG WPS2SM:110 - Machter title: The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:54 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:54 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:54 DEBUG WPS2SM:113 - Machter start: 42 -2016-05-03 14:23:54 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 14:23:54 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:54 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:54 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:54 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:54 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Attributes -2016-05-03 14:23:54 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:54 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:54 DEBUG WPS2SM:299 - Conversion to SM Type->Quantities is a Literal Input -2016-05-03 14:23:54 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:54 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:54 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:54 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:54 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 14:23:54 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-03 14:23:54 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-03 14:23:54 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-03 14:23:54 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 14:23:54 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:54 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 14:23:54 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-03 14:23:54 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Quantities -2016-05-03 14:23:54 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:54 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 14:23:54 DEBUG WPS2SM:299 - Conversion to SM Type->Time is a Literal Input -2016-05-03 14:23:54 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:54 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:54 DEBUG WPS2SM:100 - Guessed default value: year -2016-05-03 14:23:54 DEBUG WPS2SM:129 - Machter title: The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year] -2016-05-03 14:23:54 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:23:54 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-03 14:23:54 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-03 14:23:54 DEBUG WPS2SM:133 - Machter end: 76 -2016-05-03 14:23:54 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:23:54 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-03 14:23:54 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing time information [the name of a column from InputTable] -2016-05-03 14:23:54 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Time -2016-05-03 14:23:54 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:54 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN] -2016-05-03 14:23:54 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Time, description=The column containing time information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:year], typology=COLUMN]] -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:54 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:23:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:23:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:23:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:54 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:23:54 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:23:54 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:23:54 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:23:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:54 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:23:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:54 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:23:54 INFO WorkspaceExplorerServiceImpl:142 - end time - 158 msc 0 sec -2016-05-03 14:23:54 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:23:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:23:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:23:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:23:56 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 14:23:56 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:23:56 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:23:57 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:23:57 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:23:57 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:23:57 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 14:23:57 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:23:57 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:23:57 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:23:57 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 14:23:57 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:23:57 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:23:57 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:23:57 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:23:57 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:57 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 14:23:57 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 14:23:57 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 14:23:57 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 14:23:57 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 14:23:57 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 14:23:57 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 14:23:57 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 14:23:57 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:57 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:23:57 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 14:23:57 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:23:57 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:23:57 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:23:57 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:23:57 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 14:23:57 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 14:23:57 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 14:23:57 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 14:23:57 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 14:23:57 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 14:23:57 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 14:23:57 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 14:23:57 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:23:57 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 14:23:57 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:23:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:57 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:23:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:23:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:23:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:23:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:23:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:23:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:23:57 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:23:57 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:23:57 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:23:57 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:23:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:57 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:23:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:23:57 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:23:57 INFO WorkspaceExplorerServiceImpl:142 - end time - 137 msc 0 sec -2016-05-03 14:23:57 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:09 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:24:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:24:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:24:09 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:24:09 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:24:09 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:24:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:09 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:24:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:09 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:24:09 INFO WorkspaceExplorerServiceImpl:142 - end time - 134 msc 0 sec -2016-05-03 14:24:09 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:10 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:24:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 136 msc 0 sec -2016-05-03 14:24:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:10 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:24:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 133 msc 0 sec -2016-05-03 14:24:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:24:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:11 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:24:11 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:24:11 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:24:11 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:24:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:11 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:24:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:11 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:24:11 INFO WorkspaceExplorerServiceImpl:142 - end time - 146 msc 0 sec -2016-05-03 14:24:11 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:15 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:26 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:24:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:26 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:26 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:26 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:24:26 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:24:26 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:24:26 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:24:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:26 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:24:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:26 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:24:26 INFO WorkspaceExplorerServiceImpl:142 - end time - 138 msc 0 sec -2016-05-03 14:24:26 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:27 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:24:27 INFO WorkspaceExplorerServiceImpl:142 - end time - 149 msc 0 sec -2016-05-03 14:24:27 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:27 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:24:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 127 msc 0 sec -2016-05-03 14:24:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:24:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 152 msc 0 sec -2016-05-03 14:24:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:24:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:24:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:24:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:24:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:24:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:24:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 143 msc 0 sec -2016-05-03 14:24:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:24:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:25:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:25:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:26:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:26:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:27:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:27:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:27:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:27:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:28:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:28:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:29:52 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 14:29:52 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 14:29:52 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 14:29:52 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:29:52 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:29:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:29:52 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:29:52 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4b545f8e -2016-05-03 14:29:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:29:52 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:29:52 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:29:52 DEBUG TemplateModel:83 - 2016-05-03 14:29:52, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:29:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:29:52 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 14:29:54 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:29:54 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:29:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:29:54 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:29:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:29:54 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:29:54 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:29:54 DEBUG TemplateModel:83 - 2016-05-03 14:29:54, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:29:54 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:29:54 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:29:54 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 116 ms -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 14:29:54 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 14:29:54 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 14:29:54 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:29:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:29:54 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7bae93c5 -2016-05-03 14:29:54 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@2ec15efd -2016-05-03 14:29:54 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@366d35bc -2016-05-03 14:29:54 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@7c069e8b -2016-05-03 14:29:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 102 ms -2016-05-03 14:29:54 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 14:29:55 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 14:29:55 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 14:29:55 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 14:29:55 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 14:29:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:29:55 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:29:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 14:29:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 27 ms -2016-05-03 14:29:55 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 14:29:55 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:29:55 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 14:29:55 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:29:55 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 14:29:55 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 14:29:55 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 14:29:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:29:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:29:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:29:55 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 14:29:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:29:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:29:55 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 14:29:55 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 14:29:55 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 14:29:55 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 14:29:55 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 14:29:55 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 14:29:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 14:29:55 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:29:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 14:29:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 90 ms -2016-05-03 14:29:55 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 14:29:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:29:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:29:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:29:55 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 14:29:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:29:55 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 14:29:56 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:29:56 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:29:56 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 14:29:56 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:29:56 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 14:29:56 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:29:56 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:29:56 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:29:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:29:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:29:56 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 14:29:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 14:29:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:29:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:29:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:29:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:29:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:29:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:29:56 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:29:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 14:29:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:29:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:29:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:29:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:29:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:29:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:29:56 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:29:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 14:29:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:29:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:29:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:29:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:29:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:29:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:29:56 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:29:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 14:29:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:29:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:29:57 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 14:29:57 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 14:29:57 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 14:29:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:29:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:29:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:29:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:29:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:29:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:29:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:29:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:29:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:29:57 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 14:29:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:29:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:29:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:29:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:29:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:29:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:29:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:29:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:29:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:29:58 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 14:29:58 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 14:29:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:29:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:29:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 115 msc 0 sec -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:29:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:29:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:29:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:29:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:29:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:29:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:29:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:29:58 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 14:29:58 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 14:29:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:29:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:29:58 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:29:58 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:29:58 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 14:29:58 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 30 ms -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 14:29:58 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:29:58 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 14:29:58 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 14:29:58 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 14:29:58 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 14:29:58 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 14:29:58 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 14:29:58 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 14:29:58 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:29:58 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 14:29:58 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 14:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:29:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 358 msc 0 sec -2016-05-03 14:29:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 302 msc 0 sec -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:30:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:30:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:30:02 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 14:30:02 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:30:02 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:30:02 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:30:02 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:30:02 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:30:02 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 14:30:02 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:30:02 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:30:02 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:30:02 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 14:30:02 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:30:02 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:30:02 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:30:02 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:30:02 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:30:02 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 14:30:02 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 14:30:02 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 14:30:02 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 14:30:02 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 14:30:02 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 14:30:02 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 14:30:02 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 14:30:02 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:30:02 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:30:02 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 14:30:02 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:30:02 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:30:02 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:30:02 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:30:02 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 14:30:02 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 14:30:02 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 14:30:02 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 14:30:02 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 14:30:02 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 14:30:02 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 14:30:02 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 14:30:02 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:30:02 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 14:30:02 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:30:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:30:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:30:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:02 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:30:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:30:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:30:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:30:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:30:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:30:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:30:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 179 msc 0 sec -2016-05-03 14:30:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:09 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:30:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:30:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:30:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:30:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:30:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:30:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:30:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:30:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:30:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 180 msc 0 sec -2016-05-03 14:30:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:13 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:30:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:30:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:30:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:30:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:30:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:30:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:30:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:30:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:30:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:30:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:30:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:30:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-03 14:30:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:14 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:30:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:30:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:14 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 14:30:14 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:14 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:30:14 INFO WorkspaceExplorerServiceImpl:142 - end time - 158 msc 0 sec -2016-05-03 14:30:14 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:15 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:30:15 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:30:15 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:30:15 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:30:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:15 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:30:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:15 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:30:15 INFO WorkspaceExplorerServiceImpl:142 - end time - 151 msc 0 sec -2016-05-03 14:30:15 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:15 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:15 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:30:16 INFO WorkspaceExplorerServiceImpl:142 - end time - 169 msc 0 sec -2016-05-03 14:30:16 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:30:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:16 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:30:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:30:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:30:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:30:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:30:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:30:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:30:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:30:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:30:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:30:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:30:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:30:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:30:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:30:16 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:30:16 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:30:16 INFO WorkspaceExplorerServiceImpl:142 - end time - 145 msc 0 sec -2016-05-03 14:30:16 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:30:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:30:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:28 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 14:31:28 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 14:31:28 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 14:31:28 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:31:28 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:31:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:28 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:31:28 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@2a2a3de9 -2016-05-03 14:31:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:28 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:31:28 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:31:28 DEBUG TemplateModel:83 - 2016-05-03 14:31:28, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:31:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:31:28 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 14:31:29 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:31:29 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:31:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:29 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:31:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:29 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:31:29 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:31:29 DEBUG TemplateModel:83 - 2016-05-03 14:31:29, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:31:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:31:30 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:31:30 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 128 ms -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 14:31:30 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 14:31:30 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 14:31:30 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:31:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:31:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@59ac3dd4 -2016-05-03 14:31:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@e519ebe -2016-05-03 14:31:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@74b82cbd -2016-05-03 14:31:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@77654903 -2016-05-03 14:31:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 100 ms -2016-05-03 14:31:30 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 14:31:30 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 14:31:30 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 14:31:30 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 14:31:30 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 14:31:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:30 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:31:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 14:31:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-03 14:31:30 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 14:31:30 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:31:30 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 14:31:30 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:31:30 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 14:31:30 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 14:31:30 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 14:31:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:31:30 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 14:31:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:30 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 14:31:30 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 14:31:30 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 14:31:30 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 14:31:30 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 14:31:30 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 14:31:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 14:31:31 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:31:31 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 14:31:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-03 14:31:31 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 14:31:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:31 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 14:31:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:31 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 14:31:31 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:31:31 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 14:31:31 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:31:31 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:31:31 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 14:31:31 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:31:31 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:31:31 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 14:31:31 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 14:31:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 14:31:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 14:31:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:31 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:31:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 14:31:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:31:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 14:31:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:31:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 14:31:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:33 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 14:31:33 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 14:31:33 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:33 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 14:31:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:33 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 14:31:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:33 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 14:31:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 104 msc 0 sec -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:33 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 14:31:33 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 14:31:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:33 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:31:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 14:31:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 134 msc 0 sec -2016-05-03 14:31:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 29 ms -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 14:31:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:31:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 14:31:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 14:31:33 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 14:31:33 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 14:31:33 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 14:31:33 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 14:31:33 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 14:31:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:31:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 14:31:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 14:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 347 msc 0 sec -2016-05-03 14:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:31:38 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 14:31:38 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:31:38 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:31:39 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:31:39 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:31:39 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:31:39 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 14:31:39 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:31:39 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:31:39 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:31:39 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 14:31:39 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:31:39 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:31:39 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:31:39 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:31:39 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:31:39 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 14:31:39 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 14:31:39 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 14:31:39 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 14:31:39 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 14:31:39 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 14:31:39 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 14:31:39 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 14:31:39 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:31:39 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:31:39 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 14:31:39 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:31:39 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:31:39 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:31:39 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:31:39 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 14:31:39 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 14:31:39 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 14:31:39 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 14:31:39 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 14:31:39 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 14:31:39 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 14:31:39 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 14:31:39 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:31:39 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 14:31:39 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 185 msc 0 sec -2016-05-03 14:31:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 217 msc 0 sec -2016-05-03 14:31:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-03 14:31:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:45 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:45 INFO WorkspaceExplorerServiceImpl:142 - end time - 176 msc 0 sec -2016-05-03 14:31:45 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:45 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:45 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:45 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:45 INFO WorkspaceExplorerServiceImpl:142 - end time - 169 msc 0 sec -2016-05-03 14:31:45 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:48 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:48 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 443 msc 0 sec -2016-05-03 14:31:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:49 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 155 msc 0 sec -2016-05-03 14:31:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 184 msc 0 sec -2016-05-03 14:31:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:49 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 158 msc 0 sec -2016-05-03 14:31:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:50 INFO WorkspaceExplorerServiceImpl:142 - end time - 146 msc 0 sec -2016-05-03 14:31:50 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:50 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:50 INFO WorkspaceExplorerServiceImpl:142 - end time - 214 msc 0 sec -2016-05-03 14:31:50 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 135 msc 0 sec -2016-05-03 14:31:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:31:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:31:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:31:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:31:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:31:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:31:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:31:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:31:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:31:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:31:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:31:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:31:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:31:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:31:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:31:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 14:31:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:32:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:32:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:32:01 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 14:32:01 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:32:01 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:32:01 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN - BIOCLIMATE_HSPEN - A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes - - - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:32:01 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:32:01 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:32:01 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 14:32:01 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:32:01 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:32:01 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:32:01 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 14:32:01 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:32:01 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:32:01 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:32:01 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:32:01 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:32:01 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 14:32:01 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 14:32:01 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 14:32:01 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 14:32:01 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 14:32:01 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 14:32:01 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 14:32:01 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 14:32:01 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:01 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:32:01 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 14:32:01 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:01 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:01 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:32:01 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:32:01 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 14:32:01 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 14:32:01 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 14:32:01 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 14:32:01 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 14:32:01 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 14:32:01 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 14:32:01 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 14:32:01 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:01 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 14:32:01 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:32:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:32:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:32:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:32:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:32:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:32:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:32:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:32:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:32:01 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:32:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:32:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:32:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:32:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:32:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:32:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:32:01 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:32:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:32:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:32:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:32:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:32:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:32:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:32:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:32:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:32:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:32:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:32:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:32:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:32:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:32:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:32:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:32:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:32:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:32:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:32:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:32:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:32:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:32:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:32:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:32:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:32:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:32:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:32:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:32:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:32:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:32:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 215 msc 0 sec -2016-05-03 14:32:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:32:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:32:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:32:11 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 14:32:11 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:32:11 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:32:11 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM - BIONYM - An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - - - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:32:11 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 14:32:11 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:32:11 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 14:32:11 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:32:11 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:32:11 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 14:32:11 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:32:11 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:32:11 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:32:11 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 14:32:11 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 14:32:11 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:32:11 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 14:32:11 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 14:32:11 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 14:32:11 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:32:11 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 14:32:11 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 14:32:11 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 14:32:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:32:11 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:32:11 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 14:32:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:32:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 14:32:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:32:11 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 14:32:11 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:32:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:32:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:32:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:32:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:32:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:32:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:32:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:32:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:32:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:32:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:32:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:32:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:32:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:32:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:32:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:32:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:32:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:32:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:32:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:32:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:32:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:32:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:32:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:32:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:32:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:32:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:32:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:32:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:32:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:32:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:32:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:32:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:32:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:32:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:32:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:32:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:32:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:32:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:32:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:32:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:32:11 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:32:11 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:32:11 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:32:11 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:32:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:32:11 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:32:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:32:11 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:32:11 INFO WorkspaceExplorerServiceImpl:142 - end time - 129 msc 0 sec -2016-05-03 14:32:11 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:32:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:32:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:33:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:33:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:34:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:34:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:35:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:35:08 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:36:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:36:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:36:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:36:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:38:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:38:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:39:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:39:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:40:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:40:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:41:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:41:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:42:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:42:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:43:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:43:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:44:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:44:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:55:44 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 14:55:44 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 14:55:44 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 14:55:44 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:55:44 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:55:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:55:44 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:55:44 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@2b1cb49c -2016-05-03 14:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:55:44 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:55:44 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:55:44 DEBUG TemplateModel:83 - 2016-05-03 14:55:44, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:55:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:55:44 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 14:55:45 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:55:45 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:55:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:55:45 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:55:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:55:45 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:55:45 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:55:45 DEBUG TemplateModel:83 - 2016-05-03 14:55:45, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:55:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:55:46 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:55:46 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 113 ms -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 14:55:46 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 14:55:46 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 14:55:46 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:55:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:55:46 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@25ebb7f8 -2016-05-03 14:55:46 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@1e692eb7 -2016-05-03 14:55:46 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5e8ea197 -2016-05-03 14:55:46 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@398aba92 -2016-05-03 14:55:46 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 14:55:46 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 14:55:46 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 14:55:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:55:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 14:55:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:55:46 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 14:55:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:55:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:55:46 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 14:55:46 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 14:55:46 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 14:55:46 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 14:55:47 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 14:55:47 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 14:55:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 14:55:47 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:55:47 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 14:55:47 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 108 ms -2016-05-03 14:55:47 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 14:55:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 14:55:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:55:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:55:47 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 14:55:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:55:47 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 14:55:47 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:55:47 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:55:47 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 14:55:47 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:55:47 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:55:47 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 14:55:47 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 14:55:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:55:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:55:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:55:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:55:47 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 14:55:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 14:55:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:55:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:55:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:55:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:55:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:55:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:55:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:55:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:55:48 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:55:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 14:55:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:55:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:55:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:55:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:55:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:55:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:55:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:55:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:55:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:55:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 14:55:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:55:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:55:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:55:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:55:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:55:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:55:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:55:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:55:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:55:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 14:55:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:55:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:55:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:55:49 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:55:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:55:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:55:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:55:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:55:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:55:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:55:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:55:49 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 14:55:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:55:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:55:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:55:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:55:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:55:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:55:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:55:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:55:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:55:50 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 14:55:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:55:50 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 14:55:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:55:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 123 msc 0 sec -2016-05-03 14:55:50 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 14:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:55:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:55:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:55:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:55:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:55:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:55:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:55:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:55:50 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 14:55:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:55:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:55:50 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 14:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 14:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:55:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:55:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 14:55:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 122 msc 0 sec -2016-05-03 14:56:56 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 14:56:56 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 14:56:56 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 14:56:56 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:56:56 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:56:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:56:56 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:56:56 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3c6de7c3 -2016-05-03 14:56:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:56:56 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:56:56 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:56:56 DEBUG TemplateModel:83 - 2016-05-03 14:56:56, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:56:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:56:56 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 14:56:57 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 14:56:57 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 14:56:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:56:57 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 14:56:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:56:57 INFO ASLSession:352 - Logging the entrance -2016-05-03 14:56:57 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 14:56:57 DEBUG TemplateModel:83 - 2016-05-03 14:56:57, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 14:56:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:56:57 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:56:57 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 129 ms -2016-05-03 14:56:57 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 14:56:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 14:56:58 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 14:56:58 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:56:58 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 14:56:58 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@54fdd75b -2016-05-03 14:56:58 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3c00136c -2016-05-03 14:56:58 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@69987ba7 -2016-05-03 14:56:58 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@5f7adf1b -2016-05-03 14:56:58 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 14:56:58 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 14:56:58 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 14:56:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:56:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:56:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:56:58 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 14:56:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:56:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:56:58 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 14:56:58 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 14:56:58 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 14:56:58 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 14:56:58 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 14:56:58 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 14:56:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 14:56:58 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:56:58 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 14:56:58 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 79 ms -2016-05-03 14:56:59 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 14:56:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:56:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:56:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:56:59 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 14:56:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:56:59 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 14:56:59 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:56:59 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:56:59 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 14:56:59 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 14:56:59 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 14:56:59 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 14:56:59 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 14:56:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:56:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:56:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:56:59 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 14:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 14:56:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:56:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:56:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:56:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:56:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:56:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:56:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:56:59 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 14:56:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:56:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:56:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:56:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:56:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:56:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:56:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:56:59 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:57:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 14:57:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:00 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 14:57:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 14:57:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:57:00 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:57:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:00 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 14:57:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:00 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:00 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 14:57:00 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 14:57:00 INFO WorkspaceExplorerServiceImpl:188 - end time - 106 msc 0 sec -2016-05-03 14:57:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:00 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 14:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:00 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:00 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 14:57:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:00 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 14:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 14:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:57:01 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 14:57:01 INFO WorkspaceExplorerServiceImpl:188 - end time - 143 msc 0 sec -2016-05-03 14:57:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 6645 ms -2016-05-03 14:57:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 3857 ms -2016-05-03 14:57:04 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 14:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 14:57:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:57:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 14:57:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 20 ms -2016-05-03 14:57:04 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 14:57:04 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 14:57:04 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 14:57:04 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 14:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 14:57:04 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 14:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 14:57:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:57:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 14:57:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-03 14:57:04 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 14:57:04 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 14:57:04 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 14:57:04 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 14:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 14:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 14:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 14:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 14:57:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 14:57:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 4202 msc 4 sec -2016-05-03 14:57:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-03 14:57:05 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 14:57:05 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:57:05 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 14:57:05 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:57:05 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:57:05 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 14:57:14 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 14:57:14 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 14:57:14 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 14:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:57:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:57:14 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 14:57:14 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:57:14 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:57:14 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:57:14 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:57:14 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:57:14 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 14:57:14 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:57:14 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:57:14 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:57:14 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 14:57:14 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:57:14 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:57:14 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:57:14 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:57:14 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:57:14 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 14:57:14 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 14:57:14 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 14:57:14 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 14:57:14 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 14:57:14 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 14:57:14 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 14:57:14 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 14:57:14 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:14 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:57:14 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 14:57:14 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:14 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:14 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:57:14 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:57:14 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 14:57:14 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 14:57:14 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 14:57:14 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 14:57:14 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 14:57:14 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 14:57:14 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 14:57:14 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 14:57:14 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:14 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 14:57:14 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:57:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:57:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:15 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:57:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:57:15 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:57:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:57:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:57:22 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 14:57:22 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:57:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:57:23 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN - BIOCLIMATE_HSPEN - A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes - - - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:57:23 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:57:23 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:57:23 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 14:57:23 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:57:23 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:57:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:57:23 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 14:57:23 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:57:23 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:57:23 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:57:23 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:57:23 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:57:23 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 14:57:23 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 14:57:23 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 14:57:23 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 14:57:23 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 14:57:23 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 14:57:23 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 14:57:23 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 14:57:23 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:23 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:57:23 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 14:57:23 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:23 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:23 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:57:23 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:57:23 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 14:57:23 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 14:57:23 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 14:57:23 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 14:57:23 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 14:57:23 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 14:57:23 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 14:57:23 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 14:57:23 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:23 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 14:57:23 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 14:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:23 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:57:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:57:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:23 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:57:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:57:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:57:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:23 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:23 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:57:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:57:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:57:25 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 14:57:25 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:57:25 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 14:57:26 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM - BIONYM - An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - - - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 14:57:26 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 14:57:26 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 14:57:26 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 14:57:26 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 14:57:26 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 14:57:26 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 14:57:26 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:57:26 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:57:26 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:57:26 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 14:57:26 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 14:57:26 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:57:26 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 14:57:26 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 14:57:26 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 14:57:26 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:57:26 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 14:57:26 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 14:57:26 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 14:57:26 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:57:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:57:26 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 14:57:26 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:57:26 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 14:57:26 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:57:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 14:57:26 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 14:57:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:57:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:27 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:57:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:27 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:57:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:57:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:57:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:57:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:57:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:57:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:57:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:57:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:27 INFO WorkspaceExplorerServiceImpl:142 - end time - 11979 msc 11 sec -2016-05-03 14:57:27 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:57:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:57:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:57:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:57:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 524 msc 0 sec -2016-05-03 14:57:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:57:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:57:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 497 msc 0 sec -2016-05-03 14:57:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:57:55 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 14:57:55 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 14:57:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:55 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:57:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:55 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 14:57:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:57:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:57:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:57:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 14:57:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 14:57:55 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 14:57:55 DEBUG ServiceEngine:306 - get() - start -2016-05-03 14:57:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 14:57:55 DEBUG BucketCoding:42 - coding name done -2016-05-03 14:57:55 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 14:57:55 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 14:57:55 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 14:57:55 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 14:57:55 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 14:57:55 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 14:57:55 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 14:57:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 14:57:55 DEBUG BucketCoding:42 - coding name done -2016-05-03 14:57:55 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 14:57:55 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 14:57:55 DEBUG MongoIO:77 - open mongo connection -2016-05-03 14:57:55 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 14:57:55 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:55 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:55 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:55 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bedc5f4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@66e4aeb8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f8ae6ce, socketFactory=javax.net.DefaultSocketFactory@4836f6c4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 14:57:55 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 14:57:55 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 14:57:55 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1869158}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:258273}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1466443, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1617225, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:55 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 14:57:55 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:55 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:55 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:55 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1869159}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1869159}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG command:56 - Command execution completed -2016-05-03 14:57:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1869159}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG command:56 - Command execution completed -2016-05-03 14:57:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1869159}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG command:56 - Command execution completed -2016-05-03 14:57:55 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 14:57:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1869159}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG command:56 - Command execution completed -2016-05-03 14:57:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1869159}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2140721}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG command:56 - Command execution completed -2016-05-03 14:57:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=934003, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1869159}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1554505}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 14:57:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1515038, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 14:57:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 14:57:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:57:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 14:57:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 14:57:56 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 14:57:56 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 14:57:56 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 14:57:56 INFO WorkspaceExplorerServiceImpl:188 - end time - 63 msc 0 sec -2016-05-03 14:57:56 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 14:57:56 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 14:57:56 DEBUG query:56 - Query completed -2016-05-03 14:57:56 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 14:57:56 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2140721} -2016-05-03 14:57:56 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:258273} -2016-05-03 14:57:56 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1869159}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 14:57:56 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1869159} -2016-05-03 14:57:56 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1554505} -2016-05-03 14:57:56 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1869158} -2016-05-03 14:57:56 INFO MongoIO:508 - Mongo has been closed -2016-05-03 14:57:56 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 14:57:56 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 14:57:56 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 14:57:57 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 14:57:57 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 14:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:57:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:57 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 14:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:57:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 14:57:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 14:57:57 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 14:57:57 DEBUG ServiceEngine:306 - get() - start -2016-05-03 14:57:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 14:57:57 DEBUG BucketCoding:42 - coding name done -2016-05-03 14:57:57 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 14:57:57 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 14:57:57 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 14:57:57 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 14:57:57 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 14:57:57 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 14:57:57 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 14:57:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 14:57:57 DEBUG BucketCoding:42 - coding name done -2016-05-03 14:57:57 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 14:57:57 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 14:57:57 DEBUG MongoIO:77 - open mongo connection -2016-05-03 14:57:57 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 14:57:57 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:57 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:57 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:57 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bedc5f4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@66e4aeb8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f8ae6ce, socketFactory=javax.net.DefaultSocketFactory@4836f6c4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 14:57:57 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 14:57:57 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 14:57:57 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:258274}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1869161}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1437392, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:57 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 14:57:57 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1523759, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:57 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:57 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:57 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2140722}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1070092, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:57:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:57 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1554508}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1586204, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 14:57:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 14:57:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 14:57:57 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1869162}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1869162}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG command:56 - Command execution completed -2016-05-03 14:57:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1869162}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG command:56 - Command execution completed -2016-05-03 14:57:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1869162}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG command:56 - Command execution completed -2016-05-03 14:57:57 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 14:57:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1869162}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG command:56 - Command execution completed -2016-05-03 14:57:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1869162}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG command:56 - Command execution completed -2016-05-03 14:57:57 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1869162}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 14:57:57 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 14:57:57 INFO WorkspaceExplorerServiceImpl:188 - end time - 43 msc 0 sec -2016-05-03 14:57:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 14:57:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 14:57:57 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 14:57:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 14:57:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 14:57:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 14:57:58 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 14:57:58 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 14:57:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:57:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:57:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:58 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 14:57:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:57:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:57:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:57:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:58 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 14:57:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:57:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:57:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:57:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 14:57:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 14:57:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 14:57:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 14:57:58 DEBUG query:56 - Query completed -2016-05-03 14:57:58 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 14:57:58 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2140722} -2016-05-03 14:57:58 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:258274} -2016-05-03 14:57:58 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1554508} -2016-05-03 14:57:58 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1869162}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 14:57:58 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1869162} -2016-05-03 14:57:58 INFO MongoIO:508 - Mongo has been closed -2016-05-03 14:57:58 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 14:57:58 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 14:57:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 14:57:58 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1869161} -2016-05-03 14:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 144 -2016-05-03 14:57:59 DEBUG ASLSession:458 - Getting security token: null in thread 144 -2016-05-03 14:57:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:57:59 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 14:57:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 14:57:59 DEBUG ServiceEngine:193 - get() - start -2016-05-03 14:57:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 14:57:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 14:57:59 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 14:57:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 14:57:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 14:57:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 14:57:59 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 14:57:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 14:57:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 14:57:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 14:57:59 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 14:57:59 DEBUG Operation:173 - get(String) - start -2016-05-03 14:57:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 14:57:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 14:57:59 DEBUG MongoIO:77 - open mongo connection -2016-05-03 14:57:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 14:57:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bedc5f4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@66e4aeb8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f8ae6ce, socketFactory=javax.net.DefaultSocketFactory@4836f6c4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 14:57:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 14:57:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:258275}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1222291, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 14:57:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2140723}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=931319, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1869163}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1382929, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1554509}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1231251, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1869164}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 14:57:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 14:57:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 14:57:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG query:56 - Query completed -2016-05-03 14:57:59 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 14:57:59 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 14:57:59 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 14:57:59 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG update:56 - Update completed -2016-05-03 14:57:59 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1869164}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG query:56 - Query completed -2016-05-03 14:57:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:57:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:57:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:57:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:57:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:57:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:57:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 14:57:59 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 14:57:59 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 14:57:59 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 14:57:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 14:57:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 14:57:59 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 14:57:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 14:57:59 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 14:57:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 14:57:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 14:57:59 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 14:57:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 14:57:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 14:57:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 14:57:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 14:57:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 14:57:59 DEBUG MongoIO:77 - open mongo connection -2016-05-03 14:57:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 14:57:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bedc5f4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@66e4aeb8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f8ae6ce, socketFactory=javax.net.DefaultSocketFactory@4836f6c4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 14:57:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 14:57:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:258276}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1079607, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 14:57:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1869165}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2140724}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1103862, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1386396, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1554510}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1295247, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 14:57:59 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1869166}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1869166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1869166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1869166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 14:57:59 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 14:57:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1869166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1869166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG command:56 - Command execution completed -2016-05-03 14:57:59 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 14:57:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1869166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG query:56 - Query completed -2016-05-03 14:57:59 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 14:57:59 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2140724} -2016-05-03 14:57:59 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:258276} -2016-05-03 14:57:59 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1554510} -2016-05-03 14:57:59 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1869166}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 14:57:59 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1869166} -2016-05-03 14:57:59 INFO MongoIO:508 - Mongo has been closed -2016-05-03 14:57:59 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1869165} -2016-05-03 14:57:59 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 14:57:59 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 14:57:59 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 14:57:59 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 14:57:59 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 14:57:59 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 14:57:59 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 14:57:59 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 14:57:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 14:57:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 14:58:08 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2140723} -2016-05-03 14:58:08 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1869164}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 14:58:08 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1554509} -2016-05-03 14:58:08 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:258275} -2016-05-03 14:58:08 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1869164} -2016-05-03 14:58:08 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1869163} -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:58:08 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 14:58:08 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 14:58:08 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:58:08 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:58:08 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:58:08 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:58:08 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:58:08 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 14:58:08 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 14:58:08 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 14:58:08 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 14:58:08 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 14:58:08 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 14:58:08 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 14:58:08 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 14:58:08 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:58:08 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:58:08 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 14:58:08 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:58:08 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:58:08 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 14:58:08 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 14:58:08 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 14:58:08 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 14:58:08 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 14:58:08 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 14:58:08 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 14:58:08 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 14:58:08 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 14:58:08 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 14:58:08 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:58:08 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 14:58:08 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:08 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:08 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:08 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:08 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:08 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:14 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:14 INFO WorkspaceExplorerServiceImpl:142 - end time - 1375 msc 1 sec -2016-05-03 14:58:14 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 175 msc 0 sec -2016-05-03 14:58:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-03 14:58:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:26 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:26 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:58:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:27 INFO WorkspaceExplorerServiceImpl:142 - end time - 176 msc 0 sec -2016-05-03 14:58:27 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:27 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:27 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:27 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:27 INFO WorkspaceExplorerServiceImpl:142 - end time - 181 msc 0 sec -2016-05-03 14:58:27 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:58:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:58:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:29 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:58:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:58:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:58:30 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:58:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:30 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:30 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:30 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:31 INFO WorkspaceExplorerServiceImpl:142 - end time - 2846 msc 2 sec -2016-05-03 14:58:31 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:31 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:58:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:31 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:31 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:34 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:34 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:34 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:34 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:34 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:34 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:34 INFO WorkspaceExplorerServiceImpl:142 - end time - 3000 msc 3 sec -2016-05-03 14:58:34 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:34 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:58:34 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:58:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:35 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 4134 msc 4 sec -2016-05-03 14:58:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:58:35 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 14:58:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:58:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:58:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:58:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:38 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 5491 msc 5 sec -2016-05-03 14:58:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:58:39 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 14:58:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:58:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:58:39 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:58:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:58:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:58:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 1921 msc 1 sec -2016-05-03 14:58:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:58:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:40 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:58:40 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 14:58:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:40 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:58:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:58:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:58:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:58:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:58:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:58:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 14:58:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 14:58:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:58:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 1131 msc 1 sec -2016-05-03 14:58:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:58:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:58:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 130 msc 0 sec -2016-05-03 14:58:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:58:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 14:58:46 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 14:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 14:59:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 14:59:25 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 14:59:25 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 14:59:25 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 14:59:25 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 14:59:25 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 14:59:25 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 14:59:25 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 14:59:25 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 14:59:25 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 14:59:25 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 14:59:25 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 14:59:25 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 14:59:25 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 14:59:25 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 14:59:25 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 14:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 14:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 14:59:25 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 14:59:25 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 14:59:25 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 14:59:25 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 14:59:25 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 14:59:25 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:59:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:59:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:59:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:59:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:59:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:59:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:59:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:59:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:59:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:59:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:59:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:59:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:59:25 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 14:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 14:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 14:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 14:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:59:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:59:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:59:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:59:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:59:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:59:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 14:59:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 14:59:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:59:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 14:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:59:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 14:59:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 14:59:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 14:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 14:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 14:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 14:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 14:59:25 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 14:59:26 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 14:59:26 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 14:59:26 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 14:59:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:59:26 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 14:59:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 14:59:26 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 14:59:26 INFO WorkspaceExplorerServiceImpl:142 - end time - 146 msc 0 sec -2016-05-03 14:59:26 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 14:59:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 14:59:41 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:00:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:00:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:00:11 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 15:00:11 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 15:00:11 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:00:11 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:00:11 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:00:11 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:00:11 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:00:11 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:00:11 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:00:11 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 15:00:11 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 15:00:11 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:00:11 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:00:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 15:00:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 15:00:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:11 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:00:11 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 15:00:11 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:11 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:00:11 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:00:11 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:00:11 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:00:11 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 15:00:11 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 15:00:11 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:00:11 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:00:11 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:00:11 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 15:00:11 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:11 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:00:11 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:12 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:12 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:00:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:00:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:00:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:00:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:00:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:00:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 138 msc 0 sec -2016-05-03 15:00:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:00:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:00:17 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 15:00:17 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 15:00:17 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:00:17 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:00:17 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:00:17 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:00:17 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:00:17 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:00:17 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:00:17 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 15:00:17 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 15:00:17 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:00:17 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:00:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 15:00:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 15:00:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:17 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:00:17 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 15:00:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:17 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:00:17 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:00:17 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:00:17 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:00:17 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 15:00:17 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 15:00:17 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:00:17 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:00:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:00:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 15:00:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:17 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:00:17 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:00:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:00:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:00:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:00:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:00:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:00:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 139 msc 0 sec -2016-05-03 15:00:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:00:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:00:19 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 15:00:19 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 15:00:19 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:00:19 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:00:19 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:00:19 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 15:00:19 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 15:00:19 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 15:00:19 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 15:00:19 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 15:00:19 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 15:00:19 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 15:00:19 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 15:00:19 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 15:00:19 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 15:00:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:19 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 15:00:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:00:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 15:00:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:19 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 15:00:19 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:00:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:00:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:00:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:00:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:00:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:00:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:00:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:00:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 148 msc 0 sec -2016-05-03 15:00:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:00:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:00:29 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION -2016-05-03 15:00:29 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:00:29 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:00:30 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION - SGVM_INTERPOLATION - An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare - - - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - - - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - - - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - - - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - - - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - - - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - - - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - - - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - - - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - - - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - - - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - - - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:00:30 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - -2016-05-03 15:00:30 DEBUG SClient4WPS:300 - WPSClient->Input: - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - -2016-05-03 15:00:30 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:00:30 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:00:30 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:00:30 DEBUG WPS2SM:324 - Conversion to SM Type->InputFile is a Complex Input -2016-05-03 15:00:30 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:00:30 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:00:30 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:00:30 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input file in TACSAT format. E.g. http://goo.gl/i16kPw -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:InputFile -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: FileParameter [value=null, defaultMimeType=text/xml, supportedMimeTypes=[text/xml, application/d4science]] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->npoints is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The number of pings or positions required between each real or actual vessel position or ping -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:npoints -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->interval is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 120 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Average time in minutes between two adjacent datapoints -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:interval -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->margin is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Maximum deviation from specified interval to find adjacent datapoints (tolerance) -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:margin -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->res is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 100 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Number of points to use to create interpolation (including start and end point) -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:res -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->method is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: cHs -2016-05-03 15:00:30 DEBUG WPS2SM:310 - ValueType[]:[cHs, SL] -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Set to cHs for cubic Hermite spline or SL for Straight Line interpolation -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:method -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->fm is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The FM parameter in cubic interpolation -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:fm -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->distscale is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 20 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The DistScale parameter for cubic interpolation -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:distscale -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->sigline is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Sigline parameter in cubic interpolation -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:sigline -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->minspeedThr is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A filter on the minimum speed to take into account for interpolation -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:minspeedThr -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->maxspeedThr is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 6 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A filter on the maximum speed to take into account for interpolation -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:maxspeedThr -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->headingAdjustment is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:headingAdjustment -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 15:00:30 DEBUG WPS2SM:299 - Conversion to SM Type->equalDist is a Literal Input -2016-05-03 15:00:30 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:00:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:00:30 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 15:00:30 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 15:00:30 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Whether the number of positions returned should be equally spaced or not -2016-05-03 15:00:30 DEBUG WPS2SM:339 - Conversion to SM Type->Name:equalDist -2016-05-03 15:00:30 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:00:30 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 15:00:30 DEBUG SClient4WPS:657 - Parameters: [FileParameter [value=null, defaultMimeType=text/xml, supportedMimeTypes=[text/xml, application/d4science]], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT], Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM]] -2016-05-03 15:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:30 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:00:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:00:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:00:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:31 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:00:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:00:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:00:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:00:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:00:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:00:31 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 15:00:31 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:00:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:36 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:00:37 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:00:37 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:00:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:37 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:00:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:00:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:37 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:00:37 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:00:37 INFO JCRServlets:142 - Calling servlet getChildrenById 9bb0fe87-356b-4b9d-a213-04293559dc20 by giancarlo.panichi -2016-05-03 15:00:37 INFO WorkspaceExplorerServiceImpl:503 - returning size: 0 -2016-05-03 15:00:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:38 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:00:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:00:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:00:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:00:38 INFO JCRServlets:697 - Calling Servlet get Parents By Id 9bb0fe87-356b-4b9d-a213-04293559dc20 by giancarlo.panichi -2016-05-03 15:00:38 INFO JCRServlets:142 - Calling servlet getChildrenById 9bb0fe87-356b-4b9d-a213-04293559dc20 by giancarlo.panichi -2016-05-03 15:00:38 INFO WorkspaceExplorerServiceImpl:188 - end time - 54 msc 0 sec -2016-05-03 15:00:38 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:00:38 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=9bb0fe87-356b-4b9d-a213-04293559dc20, name=DataMiner, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:00:38 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 15:00:39 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:00:39 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:00:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:39 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:00:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:00:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:39 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:00:39 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:00:39 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:00:39 ERROR JCRWorkspaceItem:478 - Impossible to get total size of Computations -2016-05-03 15:00:39 INFO WorkspaceExplorerServiceImpl:503 - returning size: 0 -2016-05-03 15:00:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:00:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:00:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:39 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:00:39 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:00:39 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:00:39 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:00:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:00:39 INFO WorkspaceExplorerServiceImpl:188 - end time - 55 msc 0 sec -2016-05-03 15:00:39 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:00:39 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:00:39 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=9bb0fe87-356b-4b9d-a213-04293559dc20, name=DataMiner, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:00:39 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 15:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:44 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:00:44 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:00:44 INFO JCRServlets:697 - Calling Servlet get Parents By Id efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:00:44 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 15:00:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:00:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:00:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:00:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:00:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:00:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:00:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 154 msc 0 sec -2016-05-03 15:00:58 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:00:58 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:00:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:00:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:00:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:58 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:00:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:00:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:00:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:00:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:00:58 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 15:00:58 DEBUG ServiceEngine:306 - get() - start -2016-05-03 15:00:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:00:58 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:00:58 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 15:00:58 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 15:00:58 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:00:58 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 15:00:58 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 15:00:58 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:00:58 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 15:00:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:00:58 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:00:58 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:00:58 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:00:58 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:00:58 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:00:58 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:00:58 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:00:58 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:00:58 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bedc5f4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@66e4aeb8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f8ae6ce, socketFactory=javax.net.DefaultSocketFactory@4836f6c4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:00:58 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:00:58 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:00:58 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1869385}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1070591, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:00:58 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:00:58 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:00:58 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:00:58 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:00:58 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:258427}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=978848, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:00:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:00:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:58 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:00:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:58 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1869386}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1869386}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:00:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:58 DEBUG command:56 - Command execution completed -2016-05-03 15:00:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1869386}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG command:56 - Command execution completed -2016-05-03 15:00:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1869386}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG command:56 - Command execution completed -2016-05-03 15:00:58 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 15:00:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1869386}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG command:56 - Command execution completed -2016-05-03 15:00:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1869386}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:00:58 DEBUG command:56 - Command execution completed -2016-05-03 15:00:58 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1869386}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:00:58 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 15:00:58 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 15:00:58 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1554635}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2129829, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:00:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 15:00:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 41 msc 0 sec -2016-05-03 15:00:58 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:00:58 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2140849}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:00:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=789286, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:00:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 15:00:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:00:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 15:00:59 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:00:59 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:00:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:59 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:00:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:00:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:00:59 DEBUG query:56 - Query completed -2016-05-03 15:00:59 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 15:00:59 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2140849} -2016-05-03 15:00:59 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:258427} -2016-05-03 15:00:59 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1869386}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:00:59 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1554635} -2016-05-03 15:00:59 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1869386} -2016-05-03 15:00:59 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1869385} -2016-05-03 15:00:59 INFO MongoIO:508 - Mongo has been closed -2016-05-03 15:00:59 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 15:00:59 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 15:00:59 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 15:00:59 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 15:00:59 DEBUG ServiceEngine:306 - get() - start -2016-05-03 15:00:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:00:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:00:59 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 15:00:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 15:00:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:00:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 15:00:59 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 15:00:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:00:59 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 15:00:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:00:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:00:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:00:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:00:59 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:00:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:00:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:00:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:00:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:00:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bedc5f4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@66e4aeb8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f8ae6ce, socketFactory=javax.net.DefaultSocketFactory@4836f6c4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:00:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:00:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:00:59 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:258428}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1361325, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:00:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:00:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:00:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:00:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:00:59 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2140850}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=946022, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:00:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:00:59 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1869387}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1030758, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:00:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:00:59 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1554636}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1330806, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:00:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 15:00:59 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1869388}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1869388}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG command:56 - Command execution completed -2016-05-03 15:00:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1869388}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG command:56 - Command execution completed -2016-05-03 15:00:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1869388}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG command:56 - Command execution completed -2016-05-03 15:00:59 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 15:00:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1869388}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG command:56 - Command execution completed -2016-05-03 15:00:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1869388}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG command:56 - Command execution completed -2016-05-03 15:00:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1869388}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:59 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:00:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:00:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:00:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:00:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:00:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:00:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:00:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:00:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:00:59 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 15:00:59 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 15:00:59 INFO WorkspaceExplorerServiceImpl:188 - end time - 43 msc 0 sec -2016-05-03 15:00:59 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:00:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:00:59 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:00:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:00:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 15:01:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:01:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 15:01:00 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:01:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 15:01:00 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:01:00 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:01:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:01:00 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:01:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:01:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:01:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:01:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:01:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:01:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:01:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:01:00 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:01:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:01:00 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:01:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:01:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:01:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:01:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:01:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:01:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:01:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:01:00 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:01:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:01:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:01:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:01:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:01:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:01:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:01:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:01:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:01:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:01:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:01:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:01:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:01:00 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 15:01:00 DEBUG query:56 - Query completed -2016-05-03 15:01:00 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 15:01:00 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2140850} -2016-05-03 15:01:00 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:258428} -2016-05-03 15:01:00 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1869388}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:01:00 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1554636} -2016-05-03 15:01:00 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1869388} -2016-05-03 15:01:00 INFO MongoIO:508 - Mongo has been closed -2016-05-03 15:01:00 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 15:01:00 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 15:01:00 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 15:01:00 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1869387} -2016-05-03 15:01:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:01:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:01:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:01:01 DEBUG DataMinerManagerServiceImpl:407 - GetPublicLink(): ItemDescription [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, owner=giancarlo.panichi, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, type=EXTERNAL_FILE, publicLink=null] -2016-05-03 15:01:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:01:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:01:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:01:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:01:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:01:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:01:01 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:01:01 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 15:01:01 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 15:01:01 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 15:01:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:01:01 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:01:01 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 15:01:01 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 15:01:01 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 15:01:01 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:01:01 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 15:01:01 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 15:01:01 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:01:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:01:01 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:01:01 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:01:01 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:01:01 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:01:01 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:01:01 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:01:01 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:01:01 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:01:01 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bedc5f4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@66e4aeb8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f8ae6ce, socketFactory=javax.net.DefaultSocketFactory@4836f6c4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:01:01 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:01:01 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:01:01 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1869390}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1029897, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:01:01 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:01:01 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:01:01 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:01:01 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:01:01 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2140851}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1286873, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:01:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:01:01 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:258429}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1383892, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:01:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:01:01 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1554637}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=996565, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:01:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-03 15:01:01 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1869391}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1869391}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG command:56 - Command execution completed -2016-05-03 15:01:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1869391}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG command:56 - Command execution completed -2016-05-03 15:01:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1869391}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG command:56 - Command execution completed -2016-05-03 15:01:01 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:01:01 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:01:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1869391}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG command:56 - Command execution completed -2016-05-03 15:01:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1869391}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG command:56 - Command execution completed -2016-05-03 15:01:01 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:01:01 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1869391}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:01:01 DEBUG query:56 - Query completed -2016-05-03 15:01:01 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 15:01:01 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2140851} -2016-05-03 15:01:01 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:258429} -2016-05-03 15:01:01 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1869391}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:01:01 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1554637} -2016-05-03 15:01:01 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1869391} -2016-05-03 15:01:01 INFO MongoIO:508 - Mongo has been closed -2016-05-03 15:01:01 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1869390} -2016-05-03 15:01:01 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:01:01 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:01:01 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:01:01 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:01:01 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 15:01:01 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:01:01 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 15:01:01 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 15:01:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:01:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:02:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:02:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:03:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:04:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:04:16 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:05:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:05:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:06:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:06:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:07:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:07:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:07:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:07:56 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:08:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:09:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:09:46 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:10:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 166 -2016-05-03 15:10:41 DEBUG ASLSession:458 - Getting security token: null in thread 166 -2016-05-03 15:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:11:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:12:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:12:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:13:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:13:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:14:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:14:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:15:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:15:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:30:28 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 15:30:28 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 15:30:28 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 15:30:28 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:30:28 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:30:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:30:28 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:30:28 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@1fc1ca9e -2016-05-03 15:30:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:28 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:30:28 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:30:28 DEBUG TemplateModel:83 - 2016-05-03 15:30:28, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:30:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:30:28 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 15:30:30 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:30:30 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:30:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:30:30 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:30:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:30 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:30:30 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:30:30 DEBUG TemplateModel:83 - 2016-05-03 15:30:30, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:30:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:30:30 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:30:30 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 170 ms -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 15:30:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 15:30:31 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 15:30:31 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:30:31 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:30:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@70b6c131 -2016-05-03 15:30:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4616d072 -2016-05-03 15:30:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@7ffc8ef5 -2016-05-03 15:30:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@5b83560d -2016-05-03 15:30:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 120 ms -2016-05-03 15:30:31 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 15:30:31 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 15:30:31 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 15:30:31 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 15:30:31 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 15:30:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:31 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:30:31 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 15:30:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 20 ms -2016-05-03 15:30:31 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 15:30:31 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:30:31 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 15:30:31 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:30:32 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:30:32 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 15:30:32 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:30:32 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:30:32 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:30:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:30:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:30:32 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 15:30:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:33 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 15:30:33 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 15:30:33 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 15:30:33 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 15:30:33 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 15:30:33 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 15:30:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:30:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:30:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 15:30:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 70 ms -2016-05-03 15:30:33 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 15:30:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:33 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 15:30:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:33 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 15:30:33 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:30:33 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:30:33 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 15:30:33 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:30:33 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:30:33 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 15:30:33 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 15:30:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:33 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:30:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 15:30:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:34 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:30:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 15:30:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:34 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:30:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 15:30:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:34 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:30:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 15:30:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:35 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:30:35 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:30:35 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:35 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 15:30:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:35 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 15:30:35 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 15:30:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 140 msc 0 sec -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:35 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:30:35 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 15:30:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:35 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:30:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:30:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 183 msc 0 sec -2016-05-03 15:30:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 15:30:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:30:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 15:30:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 15:30:35 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 15:30:35 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 15:30:35 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 15:30:35 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 15:30:35 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 15:30:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:30:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:30:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 15:30:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 398 msc 0 sec -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:30:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:30:39 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 15:30:39 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:30:39 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:30:39 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:30:39 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:30:39 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:30:39 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 15:30:39 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:30:39 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:30:39 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:30:39 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 15:30:39 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:30:39 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:30:39 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:30:39 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:30:39 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:30:39 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:30:39 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:30:39 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 15:30:39 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 15:30:39 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:30:39 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:30:39 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 15:30:39 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 15:30:39 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:39 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:30:39 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 15:30:39 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:39 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:39 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:30:39 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:30:39 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:30:39 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:30:39 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 15:30:39 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 15:30:39 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:30:39 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:30:39 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:30:39 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 15:30:39 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:39 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:30:39 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:30:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:30:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:30:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:30:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:30:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:30:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:30:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:30:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:30:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:30:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:30:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:30:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:30:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:30:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:30:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:30:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:30:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 272 msc 0 sec -2016-05-03 15:30:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:30:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:30:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:30:50 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 15:30:50 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:30:50 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:30:50 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM - BIONYM - An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - - - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:30:50 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 15:30:50 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:30:50 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 15:30:50 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:30:50 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:30:50 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 15:30:50 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:30:50 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:30:50 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:30:50 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 15:30:50 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 15:30:50 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 15:30:50 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 15:30:50 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 15:30:50 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 15:30:50 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 15:30:50 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 15:30:50 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 15:30:50 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 15:30:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:50 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 15:30:50 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 15:30:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 15:30:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 15:30:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:50 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 15:30:50 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:30:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:30:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:50 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:30:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:30:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:30:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:30:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:30:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:30:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:30:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:30:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:30:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:30:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:30:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:30:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 187 msc 0 sec -2016-05-03 15:30:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:30:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:30:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:30:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:30:58 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 15:30:58 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:30:58 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:30:59 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN - BIOCLIMATE_HSPEN - A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes - - - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:30:59 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:30:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:30:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 15:30:59 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:30:59 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:30:59 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:30:59 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 15:30:59 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:30:59 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:30:59 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:30:59 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:30:59 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:30:59 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:30:59 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:30:59 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 15:30:59 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 15:30:59 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:30:59 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:30:59 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 15:30:59 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 15:30:59 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:59 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:30:59 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 15:30:59 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:30:59 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:30:59 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:30:59 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:30:59 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:30:59 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:30:59 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 15:30:59 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 15:30:59 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:30:59 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:30:59 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:30:59 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 15:30:59 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:30:59 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:30:59 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:30:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:30:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:30:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:30:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:30:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:30:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:30:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:30:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:30:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:30:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:30:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:30:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:30:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:30:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:30:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:30:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:30:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:30:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:30:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:30:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:30:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:30:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:30:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:30:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:30:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 184 msc 0 sec -2016-05-03 15:30:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:31:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:31:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:31:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:31:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:31:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:31:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:31:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:31:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:31:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:31:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:31:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:31:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:31:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:31:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 167 msc 0 sec -2016-05-03 15:31:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:31:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:31:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:36 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:31:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:31:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:31:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:31:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:31:36 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:31:36 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:31:36 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:31:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:36 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:31:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:36 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:31:36 INFO WorkspaceExplorerServiceImpl:142 - end time - 189 msc 0 sec -2016-05-03 15:31:36 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:31:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:37 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:31:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:31:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 169 msc 0 sec -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:31:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:31:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:37 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:31:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:37 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:31:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 157 msc 0 sec -2016-05-03 15:31:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:31:38 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:31:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:38 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:31:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:31:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:31:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:38 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:31:38 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:31:38 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:31:38 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:31:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:38 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:31:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:38 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:31:38 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 15:31:38 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:31:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:31:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:31:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:31:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:31:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:31:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:31:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:31:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:31:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:31:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:31:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:31:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:31:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:31:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:31:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:31:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:31:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 178 msc 0 sec -2016-05-03 15:31:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:32:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:32:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:01 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 15:37:01 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 15:37:01 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 15:37:01 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:37:01 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:37:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:01 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:37:01 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@56dcb51c -2016-05-03 15:37:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:01 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:37:01 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:37:01 DEBUG TemplateModel:83 - 2016-05-03 15:37:01, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:37:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:37:01 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 15:37:06 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:37:06 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:37:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:06 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:37:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:06 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:37:06 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:37:06 DEBUG TemplateModel:83 - 2016-05-03 15:37:06, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:37:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:37:06 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:37:06 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 136 ms -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 15:37:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 15:37:06 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 15:37:06 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:37:06 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:37:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@3e0ab304 -2016-05-03 15:37:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@18915a6d -2016-05-03 15:37:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@58ec83e9 -2016-05-03 15:37:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@46767d40 -2016-05-03 15:37:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 95 ms -2016-05-03 15:37:07 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 15:37:07 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 15:37:07 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 15:37:07 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 15:37:07 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 15:37:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:37:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 15:37:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 18 ms -2016-05-03 15:37:07 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 15:37:07 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:37:07 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 15:37:07 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:37:07 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:37:07 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:37:07 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:37:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:37:07 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 15:37:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:07 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 15:37:07 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 15:37:07 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 15:37:07 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 15:37:07 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 15:37:07 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 15:37:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:37:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:37:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 15:37:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 81 ms -2016-05-03 15:37:07 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 15:37:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:07 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 15:37:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:07 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 15:37:08 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:37:08 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:37:08 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 15:37:08 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:37:08 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:37:08 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:08 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:37:08 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 15:37:08 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:37:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 15:37:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:37:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 15:37:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:37:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 15:37:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:37:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 15:37:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:09 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:37:09 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:37:09 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:37:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:09 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 15:37:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:09 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 15:37:09 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 15:37:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:09 INFO WorkspaceExplorerServiceImpl:188 - end time - 114 msc 0 sec -2016-05-03 15:37:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:09 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:09 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 15:37:09 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:37:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:10 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:37:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:37:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:37:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:37:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 167 msc 0 sec -2016-05-03 15:37:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 15:37:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:37:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:37:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 15:37:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 15:37:10 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 15:37:10 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 15:37:10 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 15:37:10 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 15:37:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:37:10 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 15:37:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:37:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:37:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:37:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 15:37:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:37:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:37:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:37:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 398 msc 0 sec -2016-05-03 15:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:37:15 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 15:37:15 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:37:15 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:37:15 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:37:15 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:37:15 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:37:15 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 15:37:15 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:37:15 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:37:15 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:37:15 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 15:37:15 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:37:15 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:37:15 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:37:15 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:37:15 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:37:15 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:37:15 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:37:15 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 15:37:15 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 15:37:15 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:37:15 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:37:15 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 15:37:15 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 15:37:15 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:37:15 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:37:15 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 15:37:15 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:37:15 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:37:15 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:37:15 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:37:15 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:37:15 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:37:15 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 15:37:15 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 15:37:15 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:37:15 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:37:15 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:37:15 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 15:37:15 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:37:15 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:37:15 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:15 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:15 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:16 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:16 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:16 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:16 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:16 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:16 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:16 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:16 INFO WorkspaceExplorerServiceImpl:142 - end time - 222 msc 0 sec -2016-05-03 15:37:16 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-03 15:37:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 204 msc 0 sec -2016-05-03 15:37:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:23 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:23 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:23 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:23 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:23 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:23 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:23 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:23 INFO WorkspaceExplorerServiceImpl:142 - end time - 176 msc 0 sec -2016-05-03 15:37:23 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:24 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:24 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:24 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:24 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:24 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:24 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:24 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:24 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:24 INFO WorkspaceExplorerServiceImpl:142 - end time - 251 msc 0 sec -2016-05-03 15:37:24 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:50 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 200 msc 0 sec -2016-05-03 15:37:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-03 15:37:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 159 msc 0 sec -2016-05-03 15:37:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:52 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 15:37:52 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:52 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 15:37:52 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:52 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 15:37:52 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:52 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:52 INFO WorkspaceExplorerServiceImpl:142 - end time - 148 msc 0 sec -2016-05-03 15:37:52 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:52 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:53 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-03 15:37:53 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:53 INFO WorkspaceExplorerServiceImpl:142 - end time - 156 msc 0 sec -2016-05-03 15:37:53 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:37:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:37:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:37:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:37:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:37:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:37:53 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:37:53 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:37:53 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 15:37:53 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:38:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:39:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:39:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:40:58 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 15:40:58 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 15:40:58 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 15:40:58 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:40:58 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:40:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:40:58 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:40:58 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@1dd6b13d -2016-05-03 15:40:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:40:58 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:40:58 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:40:58 DEBUG TemplateModel:83 - 2016-05-03 15:40:58, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:40:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:40:58 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 15:41:00 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:41:00 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:41:00 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:41:00 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:41:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:00 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:41:00 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:41:00 DEBUG TemplateModel:83 - 2016-05-03 15:41:00, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:41:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:41:00 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:41:00 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 143 ms -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 15:41:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 15:41:00 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 15:41:00 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:41:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:41:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@1fc13a8d -2016-05-03 15:41:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3e415ae4 -2016-05-03 15:41:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@44b12076 -2016-05-03 15:41:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@6eed44d2 -2016-05-03 15:41:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 98 ms -2016-05-03 15:41:01 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 15:41:01 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 15:41:01 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 15:41:01 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 15:41:01 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 15:41:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:01 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:41:01 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 15:41:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 30 ms -2016-05-03 15:41:01 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 15:41:01 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:41:01 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 15:41:01 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:41:01 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:41:01 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:41:01 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:41:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:01 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:41:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:41:01 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 15:41:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:01 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 15:41:01 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 15:41:01 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 15:41:01 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 15:41:01 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 15:41:01 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 15:41:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 15:41:01 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:41:01 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 15:41:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 49 ms -2016-05-03 15:41:01 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 15:41:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:01 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 15:41:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:01 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 15:41:02 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:41:02 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 15:41:02 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:41:02 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:41:02 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 15:41:02 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:41:02 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:41:02 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 15:41:02 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 15:41:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:02 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:41:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 15:41:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:02 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:41:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 15:41:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:41:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 15:41:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:41:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 15:41:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:04 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:41:04 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:41:04 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:41:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:41:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:04 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 15:41:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:41:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:04 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 15:41:04 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 15:41:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 131 msc 0 sec -2016-05-03 15:41:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:41:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:04 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:41:04 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 15:41:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:04 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:41:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 125 msc 0 sec -2016-05-03 15:41:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:41:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:41:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:41:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 15:41:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:41:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:41:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 15:41:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 15:41:05 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 15:41:05 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 15:41:05 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 15:41:05 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 15:41:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:41:05 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 15:41:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:41:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:41:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:41:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 15:41:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:41:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:41:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:41:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:05 INFO WorkspaceExplorerServiceImpl:188 - end time - 389 msc 0 sec -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:41:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:41:08 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 15:41:08 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:41:08 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:41:08 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:41:08 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:41:08 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:41:08 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 15:41:08 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:41:08 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:41:08 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:41:08 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 15:41:08 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:41:08 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:41:08 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:41:08 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:41:08 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:41:08 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:41:08 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:41:08 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 15:41:08 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 15:41:08 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:41:08 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:41:08 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 15:41:08 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 15:41:08 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:41:08 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:41:08 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 15:41:08 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:41:08 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:41:08 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:41:08 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:41:08 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:41:08 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:41:08 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 15:41:08 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 15:41:08 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:41:08 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:41:08 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:41:08 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 15:41:08 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:41:08 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:41:08 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:41:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:08 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:41:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:41:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:08 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:41:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:41:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:41:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:08 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:08 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:41:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:08 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:41:08 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:41:08 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:41:08 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:41:08 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:08 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:41:08 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:08 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:41:08 INFO WorkspaceExplorerServiceImpl:142 - end time - 208 msc 0 sec -2016-05-03 15:41:08 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:10 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:41:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:41:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:41:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:41:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:41:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:41:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:41:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:41:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:41:11 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:41:11 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:41:11 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:41:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:11 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:41:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:11 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:41:11 INFO WorkspaceExplorerServiceImpl:142 - end time - 203 msc 0 sec -2016-05-03 15:41:11 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:41:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:41:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:41:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:41:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:41:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:41:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:41:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 185 msc 0 sec -2016-05-03 15:41:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:41:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:41:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 171 msc 0 sec -2016-05-03 15:41:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:41:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:41:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:41:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:41:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:41:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:41:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:41:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:41:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:41:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:41:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:41:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:41:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:41:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:41:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:41:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:41:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:41:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:41:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:41:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:41:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:41:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:41:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-03 15:41:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:41:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:41:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:42:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:42:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:43:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:43:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:44:43 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 15:44:43 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 15:44:43 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 15:44:43 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:44:43 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:44:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:44:43 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:44:43 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4c94cdb2 -2016-05-03 15:44:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:44:43 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:44:43 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:44:43 DEBUG TemplateModel:83 - 2016-05-03 15:44:43, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:44:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:44:43 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 15:44:45 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:44:45 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:44:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:44:45 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:44:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:44:45 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:44:45 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:44:45 DEBUG TemplateModel:83 - 2016-05-03 15:44:45, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:44:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:44:45 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:44:45 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 131 ms -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 15:44:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 15:44:45 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 15:44:45 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:44:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:44:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@1a918edc -2016-05-03 15:44:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4244b32a -2016-05-03 15:44:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@437e02db -2016-05-03 15:44:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@32d8f6eb -2016-05-03 15:44:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 104 ms -2016-05-03 15:44:46 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 15:44:46 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 15:44:46 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 15:44:46 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 15:44:46 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 15:44:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:44:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:44:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 15:44:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 28 ms -2016-05-03 15:44:46 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 15:44:46 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:44:46 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 15:44:46 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:44:46 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:44:46 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:44:46 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:44:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:44:46 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:44:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:44:46 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 15:44:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:46 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 15:44:46 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 15:44:46 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 15:44:46 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 15:44:46 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 15:44:46 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 15:44:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 15:44:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:44:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 15:44:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 45 ms -2016-05-03 15:44:46 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 15:44:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:44:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:46 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 15:44:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:46 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 15:44:47 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:44:47 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 15:44:48 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:44:48 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:44:48 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 15:44:48 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:44:48 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:44:48 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:48 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:44:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 15:44:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:48 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:44:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 15:44:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:48 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:44:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 15:44:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:48 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:44:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 15:44:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:49 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:44:49 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:44:49 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:44:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:44:49 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:44:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:44:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:49 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 15:44:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:44:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:49 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 15:44:49 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 15:44:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:49 INFO WorkspaceExplorerServiceImpl:188 - end time - 115 msc 0 sec -2016-05-03 15:44:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:44:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:44:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:44:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:49 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:44:49 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 15:44:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:50 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:44:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 15:44:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:44:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:44:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 155 msc 0 sec -2016-05-03 15:44:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 15:44:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 15:44:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:44:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 15:44:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 15:44:50 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 15:44:50 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 15:44:50 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 15:44:50 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 15:44:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 15:44:50 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 15:44:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 15:44:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:44:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:44:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-03 15:44:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 15:44:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 15:44:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 15:44:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 369 msc 0 sec -2016-05-03 15:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:44:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:44:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:44:52 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 15:44:52 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:44:52 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:44:53 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:44:53 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:44:53 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:44:53 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 15:44:53 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:44:53 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:44:53 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:44:53 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 15:44:53 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:44:53 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:44:53 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:44:53 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:44:53 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:44:53 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:44:53 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:44:53 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 15:44:53 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 15:44:53 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:44:53 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:44:53 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 15:44:53 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 15:44:53 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:44:53 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:44:53 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 15:44:53 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:44:53 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:44:53 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:44:53 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:44:53 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:44:53 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:44:53 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 15:44:53 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 15:44:53 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:44:53 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:44:53 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:44:53 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 15:44:53 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:44:53 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:44:53 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:44:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:44:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:44:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:44:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:53 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:44:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:44:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:44:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:44:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:44:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:44:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:44:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:53 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:44:53 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:44:53 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:44:53 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:44:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:44:53 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:44:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:44:53 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:44:53 INFO WorkspaceExplorerServiceImpl:142 - end time - 225 msc 0 sec -2016-05-03 15:44:53 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:44:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:44:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:55 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:44:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:44:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:44:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:44:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:44:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:44:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:44:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:44:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:44:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:44:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:44:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:44:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:44:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:44:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:44:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:44:56 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:44:56 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:44:56 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:44:56 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:44:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:44:56 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:44:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:44:56 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:44:56 INFO WorkspaceExplorerServiceImpl:142 - end time - 208 msc 0 sec -2016-05-03 15:44:56 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:45:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:45:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:45:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:45:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:45:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:45:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:45:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:45:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:45:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:45:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:45:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:45:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:45:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:45:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:45:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:45:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:45:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:45:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:45:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:45:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:45:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:45:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:45:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:45:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:45:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:45:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:45:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:45:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:45:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:45:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:45:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:45:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:45:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:45:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:45:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:45:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:45:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:45:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:45:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:45:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:45:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:45:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:45:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:45:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:45:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 185 msc 0 sec -2016-05-03 15:45:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:45:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:45:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:45:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:45:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:45:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:45:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:45:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:45:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:45:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:45:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:45:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:45:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:45:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:45:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:45:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:45:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:45:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:45:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:45:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:45:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:45:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:45:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:45:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:45:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:45:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:45:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:45:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:45:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:45:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:45:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:45:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:45:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:45:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 173 msc 0 sec -2016-05-03 15:45:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:45:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:45:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:46:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:46:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:47:17 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 15:47:17 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 15:47:17 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 15:47:17 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:47:17 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:47:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:47:17 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:47:17 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@46860ee0 -2016-05-03 15:47:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:47:17 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:47:17 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:47:17 DEBUG TemplateModel:83 - 2016-05-03 15:47:17, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:47:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:47:17 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 15:47:18 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:47:18 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:47:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:47:18 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:47:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:47:18 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:47:18 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:47:18 DEBUG TemplateModel:83 - 2016-05-03 15:47:18, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:47:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:47:19 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:47:19 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 122 ms -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 15:47:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 15:47:19 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 15:47:19 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:47:19 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:47:19 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@47fb63dd -2016-05-03 15:47:19 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@c0870d4 -2016-05-03 15:47:19 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1f5c83e1 -2016-05-03 15:47:19 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2214c6a3 -2016-05-03 15:47:19 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-05-03 15:47:19 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 15:47:19 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 15:47:19 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 15:47:19 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 15:47:19 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 15:47:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:47:19 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:47:19 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 15:47:19 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-03 15:47:19 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 15:47:19 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:47:19 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 15:47:19 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:47:19 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:47:19 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:47:19 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:47:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:47:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:47:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:47:19 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 15:47:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:20 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 15:47:20 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 15:47:20 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 15:47:20 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 15:47:20 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 15:47:20 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 15:47:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:47:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:47:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 15:47:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 79 ms -2016-05-03 15:47:20 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 15:47:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:47:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:20 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 15:47:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:20 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 15:47:20 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:47:20 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 15:47:20 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:47:20 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:47:20 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 15:47:20 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:47:20 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:47:20 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 15:47:20 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 15:47:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:20 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 15:47:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:47:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 15:47:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:47:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 15:47:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:47:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 15:47:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:21 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:47:21 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:47:21 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:47:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:47:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:22 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 15:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:47:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:47:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:22 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 15:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:22 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 15:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 122 msc 0 sec -2016-05-03 15:47:22 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:47:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:47:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:22 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:22 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:47:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:47:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:47:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 38 ms -2016-05-03 15:47:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 132 msc 0 sec -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:47:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:47:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 15:47:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 15:47:22 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 15:47:22 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 15:47:22 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 15:47:22 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:47:22 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:47:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:47:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:47:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:47:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 375 msc 0 sec -2016-05-03 15:47:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:47:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:47:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:47:27 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 15:47:27 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:47:27 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:47:28 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:47:28 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:47:28 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:47:28 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 15:47:28 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:47:28 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:47:28 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:47:28 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 15:47:28 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:47:28 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:47:28 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:47:28 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:47:28 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:47:28 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:47:28 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:47:28 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 15:47:28 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 15:47:28 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:47:28 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:47:28 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 15:47:28 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 15:47:28 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:47:28 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:47:28 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 15:47:28 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:47:28 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:47:28 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:47:28 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:47:28 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:47:28 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:47:28 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 15:47:28 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 15:47:28 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:47:28 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:47:28 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:47:28 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 15:47:28 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:47:28 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:47:28 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:47:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:47:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:47:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:47:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:47:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:47:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:47:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:47:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:47:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:47:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:47:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:47:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:47:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:47:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:47:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:47:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:47:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:47:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 209 msc 0 sec -2016-05-03 15:47:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:49:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:49:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:50:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:50:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:50:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:50:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:50:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:50:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:50:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:50:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:50:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:50:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:50:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:50:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:50:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:50:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:50:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:50:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:50:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:50:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:50:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:50:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:50:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:50:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:50:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:50:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:50:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:50:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:50:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:50:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:50:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:50:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:50:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:50:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:50:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:50:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:50:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:50:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:50:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:50:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:50:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:50:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:50:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:50:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:50:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:50:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:50:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:50:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:50:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:50:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:50:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:50:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:50:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:50:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:50:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:50:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:50:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:50:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:50:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:50:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:50:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:50:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:50:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:50:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:50:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 192 msc 0 sec -2016-05-03 15:50:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:50:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:50:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:51:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:54:49 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 15:54:49 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 15:54:49 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 15:54:49 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:54:49 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:54:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:54:49 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:54:49 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@2bc7005b -2016-05-03 15:54:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:54:49 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:54:49 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:54:49 DEBUG TemplateModel:83 - 2016-05-03 15:54:49, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:54:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:54:49 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 15:54:51 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:54:51 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:54:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:54:51 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:54:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:54:51 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:54:51 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:54:51 DEBUG TemplateModel:83 - 2016-05-03 15:54:51, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:54:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:54:51 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:54:51 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 125 ms -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 15:54:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 15:54:51 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 15:54:51 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:54:51 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:54:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@3000b9de -2016-05-03 15:54:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@64358f1d -2016-05-03 15:54:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@642885cf -2016-05-03 15:54:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@231b0d31 -2016-05-03 15:54:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 97 ms -2016-05-03 15:54:52 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 15:54:52 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 15:54:52 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 15:54:52 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 15:54:52 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 15:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:54:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:54:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 15:54:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-03 15:54:52 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 15:54:52 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:54:52 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 15:54:52 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:54:52 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:54:52 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:54:52 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:54:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:54:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:54:52 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 15:54:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:52 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 15:54:52 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 15:54:52 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 15:54:52 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 15:54:52 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 15:54:52 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 15:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 15:54:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:54:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 15:54:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 23 ms -2016-05-03 15:54:52 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 15:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:54:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:52 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 15:54:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:52 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 15:54:52 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:54:53 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:54:53 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 15:54:53 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:54:53 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 15:54:54 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:54:54 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:54:54 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:54 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 15:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:54 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 15:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:54 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 15:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:54 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 15:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:55 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:54:55 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:54:55 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:54:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:54:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:55 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 15:54:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:54:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:54:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:55 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 15:54:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:55 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 15:54:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 121 msc 0 sec -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:54:55 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:54:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:55 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:54:55 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 15:54:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:55 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:54:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 151 msc 0 sec -2016-05-03 15:54:55 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:54:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:54:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:54:55 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:54:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 15:54:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 15:54:55 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 15:54:55 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 15:54:55 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 15:54:55 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:54:55 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:54:55 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:54:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:54:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:54:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 396 msc 0 sec -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:54:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:54:59 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 15:54:59 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:54:59 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:54:59 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:54:59 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:54:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:54:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 15:54:59 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:54:59 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:54:59 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:54:59 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 15:54:59 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:54:59 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:54:59 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:54:59 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:54:59 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:54:59 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:54:59 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:54:59 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 15:54:59 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 15:54:59 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:54:59 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:54:59 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 15:54:59 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 15:54:59 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:54:59 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:54:59 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 15:54:59 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:54:59 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:54:59 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:54:59 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:54:59 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:54:59 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:54:59 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 15:54:59 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 15:54:59 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:54:59 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:54:59 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:54:59 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 15:54:59 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:54:59 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:54:59 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:00 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:55:00 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:55:00 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:55:00 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:55:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:00 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:55:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:00 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:55:00 INFO WorkspaceExplorerServiceImpl:142 - end time - 261 msc 0 sec -2016-05-03 15:55:00 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:02 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:55:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:55:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:55:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:02 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:55:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:55:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:55:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:55:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:55:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:55:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:55:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:55:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:55:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:55:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 178 msc 0 sec -2016-05-03 15:55:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:55:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:55:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:55:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:55:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:55:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:55:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 173 msc 0 sec -2016-05-03 15:55:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:08 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:55:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:55:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:55:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:55:08 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:55:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:08 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:08 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:08 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:55:08 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:55:08 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:55:08 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:55:08 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:08 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:55:08 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:08 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:55:08 INFO WorkspaceExplorerServiceImpl:142 - end time - 222 msc 0 sec -2016-05-03 15:55:08 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:09 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:55:09 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:55:09 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:55:09 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:55:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:09 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:55:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:09 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:55:09 INFO WorkspaceExplorerServiceImpl:142 - end time - 187 msc 0 sec -2016-05-03 15:55:09 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:55:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:09 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:55:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:55:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 156 msc 0 sec -2016-05-03 15:55:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:10 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:55:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:55:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:55:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:55:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:55:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:55:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:55:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:55:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-03 15:55:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:55:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 15:55:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 15:55:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:55:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:55:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:55:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:55:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:55:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:55:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:55:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:55:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:55:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:55:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:55:11 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:55:11 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:55:11 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:55:11 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:55:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:11 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:55:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:55:11 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:55:11 INFO WorkspaceExplorerServiceImpl:142 - end time - 165 msc 0 sec -2016-05-03 15:55:11 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 15:55:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 15:56:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:56:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:58:38 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 15:58:38 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 15:58:38 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 15:58:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:58:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:58:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:58:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:58:38 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@5e3b156a -2016-05-03 15:58:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:58:38 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:58:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:58:38 DEBUG TemplateModel:83 - 2016-05-03 15:58:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:58:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:58:38 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 15:58:40 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 15:58:40 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 15:58:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:58:40 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 15:58:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:58:40 INFO ASLSession:352 - Logging the entrance -2016-05-03 15:58:40 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 15:58:40 DEBUG TemplateModel:83 - 2016-05-03 15:58:40, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 15:58:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:58:40 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:58:40 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 128 ms -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 15:58:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 15:58:40 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 15:58:41 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:58:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 15:58:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@71d6c028 -2016-05-03 15:58:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@349ff1a7 -2016-05-03 15:58:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@750e6c96 -2016-05-03 15:58:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@7748fd65 -2016-05-03 15:58:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 104 ms -2016-05-03 15:58:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 15:58:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 15:58:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 15:58:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 15:58:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 15:58:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:58:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:58:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 15:58:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 21 ms -2016-05-03 15:58:41 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 15:58:41 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:58:41 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 15:58:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:58:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:58:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:58:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:58:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:58:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:58:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:58:41 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 15:58:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:41 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 15:58:41 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 15:58:41 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 15:58:41 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 15:58:41 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 15:58:41 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 15:58:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 15:58:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:58:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 15:58:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-03 15:58:41 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 15:58:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:58:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:41 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 15:58:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:41 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 15:58:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:58:42 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:58:42 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 15:58:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 15:58:42 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 15:58:42 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:58:42 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 15:58:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:58:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 15:58:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:58:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 15:58:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:58:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 15:58:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 15:58:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 15:58:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:43 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 15:58:43 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 15:58:43 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 15:58:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:58:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:58:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:58:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:43 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 15:58:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:58:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:58:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:58:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:43 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 15:58:43 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 15:58:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 123 msc 0 sec -2016-05-03 15:58:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:58:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:58:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:58:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:43 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 15:58:43 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 15:58:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:43 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 15:58:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 127 msc 0 sec -2016-05-03 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:58:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:58:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:58:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-03 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:58:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:58:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 15:58:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 15:58:44 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 15:58:44 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 15:58:44 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 15:58:44 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:58:44 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:58:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 15:58:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 15:58:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:58:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 1390 msc 1 sec -2016-05-03 15:58:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:58:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:58:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:58:50 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 15:58:50 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:58:50 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:58:51 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:58:51 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:58:51 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:58:51 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 15:58:51 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:58:51 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:58:51 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:58:51 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 15:58:51 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:58:51 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:58:51 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:58:51 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:58:51 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:58:51 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:58:51 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:58:51 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 15:58:51 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 15:58:51 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:58:51 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:58:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 15:58:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 15:58:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:58:51 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:58:51 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 15:58:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:58:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:58:51 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:58:51 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:58:51 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:58:51 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:58:51 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 15:58:51 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 15:58:51 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:58:51 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:58:51 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:58:51 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 15:58:51 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:58:51 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:58:51 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:58:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:58:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:58:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:58:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:58:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:58:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:58:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:58:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:58:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:58:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:58:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:58:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:58:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:58:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:58:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:58:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:58:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:58:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:58:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:58:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:58:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 223 msc 0 sec -2016-05-03 15:58:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:58:55 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:58:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:58:55 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:58:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:55 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:58:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:58:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:58:55 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:58:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:58:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:58:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:58:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:58:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:58:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:58:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:58:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:58:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:58:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:58:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:58:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:58:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:58:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:58:55 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:58:55 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:58:55 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:58:55 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:58:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:58:55 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:58:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:58:55 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:58:55 INFO WorkspaceExplorerServiceImpl:142 - end time - 191 msc 0 sec -2016-05-03 15:58:55 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:59:02 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:02 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:02 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:02 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:02 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:02 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:02 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 15:59:02 DEBUG ServiceEngine:306 - get() - start -2016-05-03 15:59:02 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:02 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:02 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 15:59:02 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 15:59:02 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:59:02 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 15:59:02 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 15:59:02 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:59:02 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 15:59:02 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:02 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:02 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:59:02 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:59:02 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:59:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:02 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:02 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:59:02 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:02 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:02 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 15:59:02 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:02 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:02 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ab4e2563, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7726b320, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@dba36fd, socketFactory=javax.net.DefaultSocketFactory@3c702315, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:59:02 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 15:59:02 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:59:03 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:59:03 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:59:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 65 msc 0 sec -2016-05-03 15:59:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:59:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 15:59:03 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:259648}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1405418, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:03 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:59:03 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1870891}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:03 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:03 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2141886}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=5986063, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:03 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=980505, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:03 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1555681}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1398543, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 15:59:03 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1870892}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1870892}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 DEBUG command:56 - Command execution completed -2016-05-03 15:59:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1870892}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 DEBUG command:56 - Command execution completed -2016-05-03 15:59:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1870892}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 DEBUG command:56 - Command execution completed -2016-05-03 15:59:03 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 15:59:03 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1870892}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 DEBUG command:56 - Command execution completed -2016-05-03 15:59:03 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1870892}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 DEBUG command:56 - Command execution completed -2016-05-03 15:59:03 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1870892}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:03 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:03 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:03 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:03 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:03 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:03 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 15:59:03 DEBUG ServiceEngine:306 - get() - start -2016-05-03 15:59:03 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:03 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:03 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 15:59:03 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 15:59:03 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:59:03 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 15:59:03 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 15:59:03 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:59:03 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 15:59:03 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:03 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:03 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:59:03 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:59:03 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:59:03 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:59:03 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:03 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:03 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:03 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ab4e2563, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7726b320, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@dba36fd, socketFactory=javax.net.DefaultSocketFactory@3c702315, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:59:03 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:59:03 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:59:04 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1870893}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1611888, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:04 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:59:04 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:04 DEBUG query:56 - Query completed -2016-05-03 15:59:04 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:04 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:04 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2141886} -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:259648} -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1555681} -2016-05-03 15:59:04 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1870892}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1870892} -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1870891} -2016-05-03 15:59:04 INFO MongoIO:508 - Mongo has been closed -2016-05-03 15:59:04 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:2141887}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 15:59:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 15:59:04 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 15:59:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=935987, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:04 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:259650}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1398668, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:04 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:04 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:04 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1555682}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2724945, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-03 15:59:04 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:1870894}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1870894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG command:56 - Command execution completed -2016-05-03 15:59:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1870894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG command:56 - Command execution completed -2016-05-03 15:59:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1870894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG command:56 - Command execution completed -2016-05-03 15:59:04 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 15:59:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1870894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG command:56 - Command execution completed -2016-05-03 15:59:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1870894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 DEBUG command:56 - Command execution completed -2016-05-03 15:59:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:9, serverValue:1870894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:04 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 15:59:04 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 15:59:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 64 msc 0 sec -2016-05-03 15:59:04 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:04 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:59:04 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:59:04 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:59:04 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 15:59:04 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:04 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:04 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:04 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:04 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:04 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:04 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:04 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:04 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 15:59:04 DEBUG query:56 - Query completed -2016-05-03 15:59:04 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:2141887} -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:259650} -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1555682} -2016-05-03 15:59:04 INFO connection:71 - Closed connection [connectionId{localValue:9, serverValue:1870894}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:1870894} -2016-05-03 15:59:04 INFO MongoIO:508 - Mongo has been closed -2016-05-03 15:59:04 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1870893} -2016-05-03 15:59:04 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 15:59:04 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 15:59:04 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 15:59:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:59:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:59:05 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 15:59:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:05 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:05 DEBUG ServiceEngine:193 - get() - start -2016-05-03 15:59:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:05 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:05 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 15:59:05 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 15:59:05 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:59:05 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 15:59:05 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 15:59:05 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:59:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:05 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:05 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:05 DEBUG Operation:173 - get(String) - start -2016-05-03 15:59:05 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:59:05 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:59:05 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:59:05 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:59:05 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:05 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:05 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:05 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ab4e2563, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7726b320, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@dba36fd, socketFactory=javax.net.DefaultSocketFactory@3c702315, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:59:05 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:59:05 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:59:05 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:259652}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1544290, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:05 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:59:05 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:05 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:05 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1870896}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1355715, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:05 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2141890}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1034793, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:05 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1555683}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1755242, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 15:59:05 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1870897}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG command:56 - Command execution completed -2016-05-03 15:59:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG command:56 - Command execution completed -2016-05-03 15:59:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG command:56 - Command execution completed -2016-05-03 15:59:05 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 15:59:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG command:56 - Command execution completed -2016-05-03 15:59:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG command:56 - Command execution completed -2016-05-03 15:59:05 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG command:56 - Command execution completed -2016-05-03 15:59:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG command:56 - Command execution completed -2016-05-03 15:59:05 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:05 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG query:56 - Query completed -2016-05-03 15:59:05 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 15:59:05 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 15:59:05 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 15:59:05 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG update:56 - Update completed -2016-05-03 15:59:05 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1870897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:05 DEBUG query:56 - Query completed -2016-05-03 15:59:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:05 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:05 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 15:59:05 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 15:59:05 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 15:59:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:05 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:05 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 15:59:05 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 15:59:05 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 15:59:05 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:59:05 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 15:59:05 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 15:59:05 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:59:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:05 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:05 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:59:05 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:59:05 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:59:05 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:59:05 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:05 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:05 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:05 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ab4e2563, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7726b320, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@dba36fd, socketFactory=javax.net.DefaultSocketFactory@3c702315, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:59:05 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:59:05 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:59:06 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1870898}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1429680, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:06 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:59:06 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:06 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:06 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:06 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:259654}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1408872, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:06 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2141891}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=968310, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:06 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1555684}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1268326, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 15:59:06 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1870899}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1870899}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG command:56 - Command execution completed -2016-05-03 15:59:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1870899}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG command:56 - Command execution completed -2016-05-03 15:59:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1870899}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG command:56 - Command execution completed -2016-05-03 15:59:06 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:06 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:06 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1870899}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG command:56 - Command execution completed -2016-05-03 15:59:06 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1870899}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG command:56 - Command execution completed -2016-05-03 15:59:06 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:06 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1870899}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG query:56 - Query completed -2016-05-03 15:59:06 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 15:59:06 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2141891} -2016-05-03 15:59:06 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:259654} -2016-05-03 15:59:06 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1870899}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:59:06 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1555684} -2016-05-03 15:59:06 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1870899} -2016-05-03 15:59:06 INFO MongoIO:508 - Mongo has been closed -2016-05-03 15:59:06 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1870898} -2016-05-03 15:59:06 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:06 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:59:06 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:59:06 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:59:06 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 15:59:06 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:59:06 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 15:59:06 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 15:59:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:12 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2141890} -2016-05-03 15:59:12 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1870897}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:59:12 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1870897} -2016-05-03 15:59:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:59:12 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:259652} -2016-05-03 15:59:12 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1870896} -2016-05-03 15:59:12 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1555683} -2016-05-03 15:59:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:12 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:59:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:59:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:59:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:59:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:59:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:59:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 171 msc 0 sec -2016-05-03 15:59:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:16 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:16 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:16 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:59:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:59:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:59:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:59:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:59:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:59:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 188 msc 0 sec -2016-05-03 15:59:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:59:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:59:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:21 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:21 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:21 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:59:21 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:59:21 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:59:21 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:59:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:21 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:59:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:21 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:59:21 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-03 15:59:21 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:22 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:59:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:22 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:59:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:59:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:59:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:59:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:59:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:59:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 192 msc 0 sec -2016-05-03 15:59:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:59:28 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:28 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:28 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:28 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 15:59:28 DEBUG ServiceEngine:306 - get() - start -2016-05-03 15:59:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:28 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:28 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 15:59:28 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 15:59:28 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:59:28 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 15:59:28 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 15:59:28 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:59:28 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 15:59:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:28 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:28 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:59:28 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:59:28 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:59:28 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:59:28 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:28 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:28 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:28 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ab4e2563, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7726b320, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@dba36fd, socketFactory=javax.net.DefaultSocketFactory@3c702315, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:59:28 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:59:28 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:59:28 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1870904}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1729547, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:28 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:59:28 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:28 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:259655}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:28 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:28 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1342246, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:28 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:2141895}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=877385, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:29 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:1555689}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:29 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1870905}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1870905}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1441803, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:29 DEBUG command:56 - Command execution completed -2016-05-03 15:59:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 15:59:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1870905}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:29 DEBUG command:56 - Command execution completed -2016-05-03 15:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1870905}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:29 DEBUG command:56 - Command execution completed -2016-05-03 15:59:29 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 15:59:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1870905}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:29 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:29 DEBUG command:56 - Command execution completed -2016-05-03 15:59:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1870905}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:29 DEBUG command:56 - Command execution completed -2016-05-03 15:59:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1870905}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:29 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:29 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 15:59:29 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 15:59:29 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:59:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 49 msc 0 sec -2016-05-03 15:59:29 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:59:29 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 15:59:29 DEBUG query:56 - Query completed -2016-05-03 15:59:29 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 15:59:29 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:2141895} -2016-05-03 15:59:29 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:259655} -2016-05-03 15:59:29 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1870905}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:59:29 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1870905} -2016-05-03 15:59:29 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:1555689} -2016-05-03 15:59:29 INFO MongoIO:508 - Mongo has been closed -2016-05-03 15:59:29 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 15:59:29 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 15:59:29 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1870904} -2016-05-03 15:59:29 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 15:59:29 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:29 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:29 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:29 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:29 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:29 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 15:59:29 DEBUG ServiceEngine:306 - get() - start -2016-05-03 15:59:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:29 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:29 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 15:59:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 15:59:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:59:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 15:59:29 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 15:59:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:59:29 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 15:59:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:29 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:59:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:59:29 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:59:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:59:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ab4e2563, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7726b320, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@dba36fd, socketFactory=javax.net.DefaultSocketFactory@3c702315, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:59:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:59:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:59:30 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:259657}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1093475, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:30 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:59:30 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:30 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:30 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1870906}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2141896}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1284346, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:30 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=872205, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:30 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1555690}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 15:59:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2322250, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-03 15:59:30 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1870907}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1870907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG command:56 - Command execution completed -2016-05-03 15:59:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1870907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG command:56 - Command execution completed -2016-05-03 15:59:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1870907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG command:56 - Command execution completed -2016-05-03 15:59:30 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 15:59:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1870907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG command:56 - Command execution completed -2016-05-03 15:59:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1870907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG command:56 - Command execution completed -2016-05-03 15:59:30 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1870907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 15:59:30 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 15:59:30 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-03 15:59:30 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 15:59:30 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:59:30 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 15:59:30 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 15:59:30 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 15:59:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-03 15:59:30 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:30 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:30 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:30 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:30 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:30 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:30 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:30 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 15:59:30 DEBUG query:56 - Query completed -2016-05-03 15:59:30 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 15:59:30 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2141896} -2016-05-03 15:59:30 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:259657} -2016-05-03 15:59:30 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1555690} -2016-05-03 15:59:30 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1870907}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:59:30 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1870907} -2016-05-03 15:59:30 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1870906} -2016-05-03 15:59:30 INFO MongoIO:508 - Mongo has been closed -2016-05-03 15:59:30 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 15:59:30 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 15:59:30 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 15:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:59:31 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 15:59:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:31 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:31 DEBUG ServiceEngine:193 - get() - start -2016-05-03 15:59:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:31 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:31 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 15:59:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 15:59:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:59:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 15:59:31 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 15:59:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:59:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:31 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:31 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:31 DEBUG Operation:173 - get(String) - start -2016-05-03 15:59:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:59:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:59:31 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:59:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:59:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ab4e2563, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7726b320, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@dba36fd, socketFactory=javax.net.DefaultSocketFactory@3c702315, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:59:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:59:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:59:31 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:259659}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1261526, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:59:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:31 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1870908}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1110171, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:31 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2141897}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=809857, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:31 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1555691}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1379478, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 15:59:31 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1870909}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG command:56 - Command execution completed -2016-05-03 15:59:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG command:56 - Command execution completed -2016-05-03 15:59:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG command:56 - Command execution completed -2016-05-03 15:59:31 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 15:59:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG command:56 - Command execution completed -2016-05-03 15:59:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG command:56 - Command execution completed -2016-05-03 15:59:31 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG command:56 - Command execution completed -2016-05-03 15:59:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG command:56 - Command execution completed -2016-05-03 15:59:31 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:31 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG query:56 - Query completed -2016-05-03 15:59:31 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 15:59:31 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 15:59:31 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 15:59:31 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG update:56 - Update completed -2016-05-03 15:59:31 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1870909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG query:56 - Query completed -2016-05-03 15:59:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:31 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 15:59:31 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 15:59:31 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 15:59:31 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 15:59:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:31 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:31 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 15:59:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 15:59:31 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 15:59:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 15:59:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 15:59:31 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 15:59:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 15:59:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 15:59:31 DEBUG BucketCoding:42 - coding name done -2016-05-03 15:59:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 15:59:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 15:59:31 DEBUG MongoIO:77 - open mongo connection -2016-05-03 15:59:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 15:59:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ab4e2563, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7726b320, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@dba36fd, socketFactory=javax.net.DefaultSocketFactory@3c702315, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 15:59:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 15:59:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 15:59:31 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:259660}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1241800, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 15:59:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:31 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2141898}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1157816, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:31 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1870910}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1885275, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 15:59:31 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1555692}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1785079, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 15:59:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 15:59:32 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1870911}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1870911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:32 DEBUG command:56 - Command execution completed -2016-05-03 15:59:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1870911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:32 DEBUG command:56 - Command execution completed -2016-05-03 15:59:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1870911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:32 DEBUG command:56 - Command execution completed -2016-05-03 15:59:32 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:32 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1870911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:32 DEBUG command:56 - Command execution completed -2016-05-03 15:59:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1870911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:32 DEBUG command:56 - Command execution completed -2016-05-03 15:59:32 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:32 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1870911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:32 DEBUG query:56 - Query completed -2016-05-03 15:59:32 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 15:59:32 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2141898} -2016-05-03 15:59:32 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:259660} -2016-05-03 15:59:32 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1870911}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:59:32 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1555692} -2016-05-03 15:59:32 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1870911} -2016-05-03 15:59:32 INFO MongoIO:508 - Mongo has been closed -2016-05-03 15:59:32 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1870910} -2016-05-03 15:59:32 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 15:59:32 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:59:32 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:59:32 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:59:32 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 15:59:32 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 15:59:32 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 15:59:32 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 15:59:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 15:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:41 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 15:59:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 15:59:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 15:59:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 15:59:41 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 15:59:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 15:59:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 15:59:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 15:59:45 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2141897} -2016-05-03 15:59:45 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:259659} -2016-05-03 15:59:45 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1555691} -2016-05-03 15:59:45 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1870909}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 15:59:45 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1870909} -2016-05-03 15:59:45 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1870908} -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:59:48 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 15:59:48 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:59:48 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 15:59:48 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN - BIOCLIMATE_HSPEN - A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes - - - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 15:59:48 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 15:59:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 15:59:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 15:59:48 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 15:59:48 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 15:59:48 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 15:59:48 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 15:59:48 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:59:48 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:59:48 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:59:48 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:59:48 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:59:48 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:59:48 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:59:48 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 15:59:48 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 15:59:48 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:59:48 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:59:48 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 15:59:48 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 15:59:48 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:59:48 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:59:48 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 15:59:48 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:59:48 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:59:48 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:59:48 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:59:48 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:59:48 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:59:48 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 15:59:48 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 15:59:48 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:59:48 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:59:48 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:59:48 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 15:59:48 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:59:48 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:59:48 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:48 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 15:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:48 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:59:48 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:59:48 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:59:48 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:59:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:48 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:59:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:48 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:59:48 INFO WorkspaceExplorerServiceImpl:142 - end time - 200 msc 0 sec -2016-05-03 15:59:48 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 15:59:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 15:59:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 15:59:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 15:59:56 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 15:59:56 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 15:59:56 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 15:59:56 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 15:59:56 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 15:59:56 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 15:59:56 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:59:56 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 15:59:56 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 15:59:56 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 15:59:56 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 15:59:56 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 15:59:56 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 15:59:56 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 15:59:56 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 15:59:56 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:59:56 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 15:59:56 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 15:59:56 DEBUG WPS2SM:92 - WPS type: -2016-05-03 15:59:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 15:59:56 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 15:59:56 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 15:59:56 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 15:59:56 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 15:59:56 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 15:59:56 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 15:59:56 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 15:59:56 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 15:59:56 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 15:59:56 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 15:59:56 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 15:59:56 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 15:59:56 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:57 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 15:59:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:57 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 15:59:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 15:59:57 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 15:59:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 15:59:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 15:59:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 15:59:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 15:59:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 15:59:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 15:59:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 15:59:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 15:59:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 15:59:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 15:59:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 15:59:57 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 15:59:57 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 15:59:57 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 15:59:57 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 15:59:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:57 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 15:59:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 15:59:57 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 15:59:57 INFO WorkspaceExplorerServiceImpl:142 - end time - 185 msc 0 sec -2016-05-03 15:59:57 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 16:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 16:00:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:00:17 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 16:00:17 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 16:00:17 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:00:17 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:00:17 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:00:17 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:00:17 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:00:17 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:00:17 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:00:17 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 16:00:17 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 16:00:17 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:00:17 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:00:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 16:00:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 16:00:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:00:17 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:00:17 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 16:00:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:00:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:00:17 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:00:17 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:00:17 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:00:17 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:00:17 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 16:00:17 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 16:00:17 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:00:17 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:00:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:00:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 16:00:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:00:17 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:00:17 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:00:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:00:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:00:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:00:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:00:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:00:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:00:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:00:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:00:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 171 msc 0 sec -2016-05-03 16:00:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:00:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:00:32 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:00:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:00:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:00:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:32 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:00:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:00:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:00:32 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:00:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 16:00:32 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 16:00:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:00:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:00:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:00:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:00:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:32 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:00:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:00:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:00:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 168 msc 0 sec -2016-05-03 16:00:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:00:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:00:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:00:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:00:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 167 msc 0 sec -2016-05-03 16:00:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:00:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:00:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:00:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:00:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:00:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:00:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:00:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:00:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:00:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:00:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:00:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:00:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:00:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 169 msc 0 sec -2016-05-03 16:00:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:01:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:01:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:02:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 16:02:18 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 16:03:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:03:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:04:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:04:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:05:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 16:05:03 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 16:05:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:05:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:06:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:06:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:08:15 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 16:08:15 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 16:08:15 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 16:08:15 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 16:08:15 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 16:08:15 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:08:15 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 16:08:15 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3fdd5e2 -2016-05-03 16:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:08:15 INFO ASLSession:352 - Logging the entrance -2016-05-03 16:08:15 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 16:08:15 DEBUG TemplateModel:83 - 2016-05-03 16:08:15, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 16:08:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:08:15 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 16:08:17 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 16:08:17 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 16:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:08:17 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 16:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:17 INFO ASLSession:352 - Logging the entrance -2016-05-03 16:08:17 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 16:08:17 DEBUG TemplateModel:83 - 2016-05-03 16:08:17, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 16:08:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:08:17 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 16:08:17 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 125 ms -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 16:08:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 16:08:17 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 16:08:17 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:08:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 16:08:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@45012d66 -2016-05-03 16:08:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@41c59f17 -2016-05-03 16:08:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@65451970 -2016-05-03 16:08:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@e63cfbf -2016-05-03 16:08:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 114 ms -2016-05-03 16:08:18 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 16:08:18 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 16:08:18 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 16:08:18 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 16:08:18 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 16:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:18 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:08:18 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 16:08:18 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 17 ms -2016-05-03 16:08:18 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 16:08:18 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:08:18 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 16:08:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:08:18 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 16:08:18 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 16:08:18 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 16:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:08:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:08:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:08:18 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 16:08:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:18 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 16:08:18 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 16:08:18 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 16:08:18 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 16:08:18 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 16:08:18 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 16:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 16:08:18 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:08:18 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 16:08:18 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 26 ms -2016-05-03 16:08:18 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 16:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:08:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:18 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 16:08:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:18 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 16:08:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:08:18 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 16:08:18 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 16:08:19 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 16:08:19 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 16:08:19 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 16:08:19 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 16:08:19 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:19 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 16:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:19 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 16:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:19 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 16:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:19 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 16:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:20 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 16:08:20 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 16:08:20 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:20 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 16:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:20 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 16:08:20 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 16:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 114 msc 0 sec -2016-05-03 16:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:20 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 16:08:20 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 16:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:20 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 144 msc 0 sec -2016-05-03 16:08:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:08:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 16:08:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:08:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:08:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 16:08:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 16:08:20 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 16:08:20 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 16:08:20 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 16:08:20 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:08:20 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:08:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:08:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 16:08:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 397 msc 0 sec -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:08:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:08:27 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 16:08:27 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:08:27 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:08:27 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 16:08:27 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 16:08:27 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 16:08:27 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 16:08:27 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 16:08:27 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 16:08:27 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:08:27 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 16:08:27 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:08:27 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:08:27 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:08:27 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:08:27 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:08:27 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:08:27 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:08:27 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 16:08:27 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 16:08:27 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:08:27 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:08:27 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 16:08:27 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 16:08:27 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:08:27 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:08:27 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 16:08:27 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:08:27 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:08:27 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:08:27 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:08:27 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:08:27 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:08:27 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 16:08:27 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 16:08:27 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:08:27 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:08:27 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:08:27 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 16:08:27 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:08:27 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:08:27 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:08:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:08:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:08:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:08:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:27 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:08:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:08:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:08:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:08:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:08:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:08:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:08:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:08:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:08:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:08:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:08:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:08:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:08:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:08:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:08:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 232 msc 0 sec -2016-05-03 16:08:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:08:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:08:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:08:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:08:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:08:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:08:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:08:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:08:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 214 msc 0 sec -2016-05-03 16:08:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:40 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:08:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 192 msc 0 sec -2016-05-03 16:08:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:40 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:08:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:08:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:08:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 165 msc 0 sec -2016-05-03 16:08:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:00 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:09:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:09:00 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 16:09:00 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:09:00 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:09:00 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN - BIOCLIMATE_HSPEN - A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes - - - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 16:09:00 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 16:09:00 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_List - list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - Name of the parameter: HSPEN_Table_List. list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 16:09:00 DEBUG SClient4WPS:300 - WPSClient->Input: - HSPEN_Table_Names - list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HSPEN_Table_Names. list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 16:09:00 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 16:09:00 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 16:09:00 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:09:00 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 16:09:00 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:09:00 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:09:00 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:09:00 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:09:00 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:09:00 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:09:00 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:09:00 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 16:09:00 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 16:09:00 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:09:00 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:09:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 16:09:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 16:09:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:00 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:09:00 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 16:09:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:00 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:09:00 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:09:00 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:09:00 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:09:00 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 16:09:00 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 16:09:00 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:09:00 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:09:00 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:09:00 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 16:09:00 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:00 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:09:00 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:00 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:00 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:09:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:00 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:09:00 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:09:00 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:09:00 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:09:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:00 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:09:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:00 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:09:00 INFO WorkspaceExplorerServiceImpl:142 - end time - 196 msc 0 sec -2016-05-03 16:09:00 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:05 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:09:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:05 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:09:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:09:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:09:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:09:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:09:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:09:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:09:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:09:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 171 msc 0 sec -2016-05-03 16:09:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:09:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 167 msc 0 sec -2016-05-03 16:09:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:09:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-03 16:09:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:09:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:09:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:09:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:09:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:09:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:09:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 181 msc 0 sec -2016-05-03 16:09:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:09:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:16 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:09:16 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 16:09:16 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:09:16 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:09:17 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM - BIONYM - An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - - - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 16:09:17 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-03 16:09:17 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 16:09:17 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 16:09:17 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 16:09:17 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:09:17 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 16:09:17 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:09:17 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:09:17 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:09:17 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 16:09:17 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 16:09:17 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 16:09:17 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 16:09:17 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 16:09:17 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 16:09:17 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 16:09:17 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 16:09:17 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 16:09:17 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 16:09:17 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:17 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:17 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 16:09:17 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:17 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 16:09:17 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 16:09:17 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:09:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:09:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:09:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:09:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:09:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:09:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:09:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:09:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:09:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:09:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:09:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 16:09:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:09:42 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN -2016-05-03 16:09:42 DEBUG WPS2SM:324 - Conversion to SM Type->HSPEN_Table_List is a Complex Input -2016-05-03 16:09:42 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:09:42 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:09:42 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:09:42 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:09:42 DEBUG WPS2SM:234 - Machter title: list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:09:42 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:09:42 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:09:42 DEBUG WPS2SM:238 - Machter start: 84 -2016-05-03 16:09:42 DEBUG WPS2SM:240 - Machter end: 150 -2016-05-03 16:09:42 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:09:42 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:09:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN tables containing the species for which the salinity will be analyzed [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HSPEN) http://goo.gl/4zDiAK] -2016-05-03 16:09:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_List -2016-05-03 16:09:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:42 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:09:42 DEBUG WPS2SM:299 - Conversion to SM Type->HSPEN_Table_Names is a Literal Input -2016-05-03 16:09:42 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:42 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:09:42 DEBUG WPS2SM:148 - Machter title: list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:09:42 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:09:42 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:09:42 DEBUG WPS2SM:151 - Machter start: 48 -2016-05-03 16:09:42 DEBUG WPS2SM:152 - Machter end: 83 -2016-05-03 16:09:42 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:09:42 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:09:42 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:09:42 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HSPEN_Table_Names -2016-05-03 16:09:42 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:42 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:09:42 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HSPEN_Table_Names, description=list of HSPEN table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:09:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:09:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:42 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:09:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:09:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:09:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:09:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:09:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:09:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:09:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:09:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:09:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 173 msc 0 sec -2016-05-03 16:09:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:09:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:09:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:09:44 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-03 16:09:44 DEBUG WPS2SM:324 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-03 16:09:44 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:09:44 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:09:44 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:09:44 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-03 16:09:44 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-03 16:09:44 DEBUG WPS2SM:130 - Machter find: true -2016-05-03 16:09:44 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-03 16:09:44 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-03 16:09:44 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-03 16:09:44 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-03 16:09:44 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:RawNamesColumn -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:OutputTableLabel -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The reference dataset to use -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Parser_Name -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[true, false] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_1 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_1 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_1 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_2 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_2 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_2 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_3 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_3 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_3 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_4 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_4 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_4 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-03 16:09:44 DEBUG WPS2SM:310 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Matcher_5 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:Threshold_5 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-03 16:09:44 DEBUG WPS2SM:299 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-03 16:09:44 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:09:44 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 16:09:44 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-03 16:09:44 DEBUG WPS2SM:338 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-03 16:09:44 DEBUG WPS2SM:339 - Conversion to SM Type->Name:MaxResults_5 -2016-05-03 16:09:44 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:09:44 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-03 16:09:44 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:09:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:09:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:09:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:09:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:09:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:09:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:09:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:09:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:09:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:09:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:09:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:09:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:09:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:09:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:09:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:09:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:09:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:09:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:09:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:09:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:09:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:09:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:09:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:09:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 181 msc 0 sec -2016-05-03 16:09:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:10:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:10:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:11:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:11:00 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:11:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:11:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:12:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:12:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:13:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:13:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:14:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:14:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:15:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:15:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:16:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:16:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:17:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:18:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:18:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:18:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:18:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:18:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:18:50 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 16:18:50 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 16:18:50 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:18:50 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:18:50 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:18:50 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:18:50 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:18:50 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:18:50 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:18:50 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 16:18:50 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 16:18:50 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:18:50 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:18:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 16:18:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 16:18:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:18:50 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:18:50 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 16:18:50 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:18:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:18:50 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:18:50 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:18:50 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:18:50 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:18:50 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 16:18:50 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 16:18:50 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:18:50 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:18:50 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:18:50 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 16:18:50 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:18:50 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:18:50 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:18:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:18:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:18:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:18:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:18:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:18:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:18:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:18:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:18:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:18:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:18:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:18:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:18:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:18:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:18:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:18:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:18:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:18:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:18:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:18:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:18:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:18:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:18:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:18:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:18:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:18:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:18:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:18:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:18:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:18:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:18:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:18:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:18:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:18:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:18:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:18:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:18:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:18:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:18:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:18:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 171 msc 0 sec -2016-05-03 16:18:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:19:39 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 16:19:39 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 16:19:39 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 16:19:39 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 16:19:39 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 16:19:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:19:39 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 16:19:39 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@e1bef6a -2016-05-03 16:19:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:19:39 INFO ASLSession:352 - Logging the entrance -2016-05-03 16:19:39 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 16:19:39 DEBUG TemplateModel:83 - 2016-05-03 16:19:39, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 16:19:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:19:39 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 16:19:40 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 16:19:40 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 16:19:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:19:40 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 16:19:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:19:40 INFO ASLSession:352 - Logging the entrance -2016-05-03 16:19:40 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 16:19:40 DEBUG TemplateModel:83 - 2016-05-03 16:19:40, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 16:19:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:19:40 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 16:19:40 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 121 ms -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 16:19:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 16:19:41 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 16:19:41 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:19:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 16:19:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@60c82b07 -2016-05-03 16:19:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@587528eb -2016-05-03 16:19:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@361b3fcf -2016-05-03 16:19:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@3c5f4488 -2016-05-03 16:19:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 106 ms -2016-05-03 16:19:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 16:19:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 16:19:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 16:19:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 16:19:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 16:19:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:19:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:19:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 16:19:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-03 16:19:41 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 16:19:41 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:19:41 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 16:19:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:19:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 16:19:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 16:19:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 16:19:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:19:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:19:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:19:41 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 16:19:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:41 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 16:19:41 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 16:19:41 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 16:19:41 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 16:19:41 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 16:19:41 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 16:19:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 16:19:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:19:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 16:19:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-03 16:19:41 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 16:19:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:19:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:41 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 16:19:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:41 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 16:19:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:19:42 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 16:19:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 16:19:42 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 16:19:42 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 16:19:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 16:19:42 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 16:19:42 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:19:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 16:19:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:19:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 16:19:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:19:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 16:19:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:19:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 16:19:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 16:19:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 16:19:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:19:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:19:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:44 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 16:19:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:19:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:19:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:44 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 16:19:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:44 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 16:19:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 112 msc 0 sec -2016-05-03 16:19:44 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:19:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:19:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:44 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 16:19:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:44 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:19:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:19:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 16:19:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 134 msc 0 sec -2016-05-03 16:19:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:19:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:19:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 16:19:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-05-03 16:19:44 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 16:19:44 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 16:19:44 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 16:19:44 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:19:44 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:19:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:19:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 16:19:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:19:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:19:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 367 msc 0 sec -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:19:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:19:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:19:48 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 16:19:48 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:19:48 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:19:48 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 16:19:48 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 16:19:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 16:19:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 16:19:48 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 16:19:48 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 16:19:48 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:19:48 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 16:19:48 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:19:48 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:19:48 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:19:48 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:19:48 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:19:48 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:19:48 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:19:48 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 16:19:48 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 16:19:48 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:19:48 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:19:48 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 16:19:48 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 16:19:48 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:19:48 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:19:48 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 16:19:48 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:19:48 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:19:48 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:19:48 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:19:48 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:19:48 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:19:48 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 16:19:48 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 16:19:48 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:19:48 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:19:48 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:19:48 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 16:19:48 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:19:48 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:19:48 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:19:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:19:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:19:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:19:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:48 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:19:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:19:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:19:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:19:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:19:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:19:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:19:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:19:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:19:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:19:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:19:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:19:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:19:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:19:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:19:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:19:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:19:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:19:49 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:19:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:19:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:19:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:19:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:19:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:19:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:19:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:19:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 189 msc 0 sec -2016-05-03 16:19:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:20:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:20:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:21:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:21:29 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:22:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:22:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:23:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:23:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:23:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:23:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:23:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:23:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:23:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:23:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:23:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:23:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:23:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:23:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:23:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:23:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:23:57 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 16:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:23:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:23:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:23:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:23:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:23:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:23:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:23:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:23:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:23:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:23:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:23:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:23:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:23:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:23:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:23:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:23:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:23:57 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:23:57 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:23:57 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:23:57 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:23:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:23:57 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:23:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:23:57 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:23:57 INFO WorkspaceExplorerServiceImpl:142 - end time - 153 msc 0 sec -2016-05-03 16:23:57 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:24:08 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:24:08 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:24:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:24:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:24:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:24:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:08 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:24:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:24:08 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:24:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:24:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:08 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:24:08 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:24:08 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:24:08 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:24:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:24:08 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:24:08 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 16:24:08 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 16:24:08 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:24:08 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:24:08 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:24:08 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:24:08 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:24:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:24:08 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:24:08 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:24:08 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:24:08 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:24:08 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:24:08 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:08 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 16:24:08 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 16:24:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 16:24:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:08 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:08 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bb5edd5e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4df0ccc9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7c14c818, socketFactory=javax.net.DefaultSocketFactory@385cdf4c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:24:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:24:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:24:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:24:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:08 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:24:08 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:24:08 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:24:08 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:24:08 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:24:08 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:24:08 INFO WorkspaceExplorerServiceImpl:188 - end time - 114 msc 0 sec -2016-05-03 16:24:08 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:24:08 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:260209}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1563279, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:08 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:24:08 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:08 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:08 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2142353}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:24:08 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:24:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1009126, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:08 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1556147}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1388496, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:24:08 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1871574}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1263789, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:08 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:24:08 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1871575}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871575}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG command:56 - Command execution completed -2016-05-03 16:24:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871575}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG command:56 - Command execution completed -2016-05-03 16:24:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871575}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG command:56 - Command execution completed -2016-05-03 16:24:08 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:24:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871575}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG command:56 - Command execution completed -2016-05-03 16:24:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871575}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:08 DEBUG command:56 - Command execution completed -2016-05-03 16:24:08 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1871575}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:24:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:24:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:24:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:24:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:24:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:24:09 DEBUG query:56 - Query completed -2016-05-03 16:24:09 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 16:24:09 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2142353} -2016-05-03 16:24:09 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:260209} -2016-05-03 16:24:09 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1556147} -2016-05-03 16:24:09 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1871575}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:24:09 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1871575} -2016-05-03 16:24:09 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1871574} -2016-05-03 16:24:09 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:24:09 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:24:09 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:24:09 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 16:24:10 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:24:10 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:10 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 16:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 16:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 16:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:10 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:24:10 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:24:10 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:24:10 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:24:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:24:10 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:24:10 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 16:24:10 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:24:10 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:24:10 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:24:10 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:24:10 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:24:10 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:24:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:24:10 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:24:10 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:24:10 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:24:10 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:24:10 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:24:10 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:10 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:10 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:10 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bb5edd5e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4df0ccc9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7c14c818, socketFactory=javax.net.DefaultSocketFactory@385cdf4c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:24:10 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:24:10 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:24:10 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1871576}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1257145, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:10 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:24:10 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:10 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:10 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:10 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:260210}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2142355}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1135243, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=13444204, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=13.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:24:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:24:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:24:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:10 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1556148}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1797426, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=13.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 16:24:10 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:24:10 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:24:10 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1871577}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871577}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG command:56 - Command execution completed -2016-05-03 16:24:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871577}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG command:56 - Command execution completed -2016-05-03 16:24:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871577}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG command:56 - Command execution completed -2016-05-03 16:24:10 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:24:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871577}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG command:56 - Command execution completed -2016-05-03 16:24:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871577}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 DEBUG command:56 - Command execution completed -2016-05-03 16:24:10 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1871577}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:10 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:24:10 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:24:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 39 msc 0 sec -2016-05-03 16:24:10 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:24:10 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:24:10 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:24:10 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:24:10 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:24:11 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:24:11 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 16:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 16:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 16:24:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:11 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:24:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:11 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:24:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:11 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:24:11 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:24:11 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:24:11 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 16:24:11 DEBUG query:56 - Query completed -2016-05-03 16:24:11 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 16:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2142355} -2016-05-03 16:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:260210} -2016-05-03 16:24:11 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1871577}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1871577} -2016-05-03 16:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1556148} -2016-05-03 16:24:11 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:24:11 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:24:11 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1871576} -2016-05-03 16:24:11 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 16:24:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:24:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:24:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:24:12 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 16:24:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:12 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:24:12 DEBUG ServiceEngine:193 - get() - start -2016-05-03 16:24:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:24:12 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:24:12 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 16:24:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:24:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:24:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:24:12 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 16:24:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:24:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:24:12 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:24:12 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:24:12 DEBUG Operation:173 - get(String) - start -2016-05-03 16:24:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:24:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:24:12 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:24:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:24:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bb5edd5e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4df0ccc9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7c14c818, socketFactory=javax.net.DefaultSocketFactory@385cdf4c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:24:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:24:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1871578}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1260984, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:24:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:260212}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2142356}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=901941, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=9732316, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=9.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1556149}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1301210, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=9.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1871579}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:24:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:24:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:24:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG query:56 - Query completed -2016-05-03 16:24:12 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 16:24:12 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:24:12 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 16:24:12 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG update:56 - Update completed -2016-05-03 16:24:12 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1871579}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG query:56 - Query completed -2016-05-03 16:24:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:24:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:24:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:24:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:24:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:24:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:24:12 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:24:12 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 16:24:12 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 16:24:12 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 16:24:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:24:12 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:24:12 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 16:24:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:24:12 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 16:24:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:24:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 16:24:12 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 16:24:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:24:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:24:12 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:24:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:24:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:24:12 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:24:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:24:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bb5edd5e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4df0ccc9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7c14c818, socketFactory=javax.net.DefaultSocketFactory@385cdf4c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:24:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:24:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1871580}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1469089, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:24:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:24:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2142357}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1008410, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:260213}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1087462, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1556150}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1417473, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:24:12 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1871581}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:24:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871581}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871581}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871581}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:24:12 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:24:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871581}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871581}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG command:56 - Command execution completed -2016-05-03 16:24:12 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:24:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1871581}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:24:12 DEBUG query:56 - Query completed -2016-05-03 16:24:12 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 16:24:12 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2142357} -2016-05-03 16:24:12 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:260213} -2016-05-03 16:24:12 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1871581}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:24:12 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1556150} -2016-05-03 16:24:12 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1871581} -2016-05-03 16:24:12 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1871580} -2016-05-03 16:24:12 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:24:12 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:24:12 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:24:12 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:24:12 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:24:12 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 16:24:12 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:24:12 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:24:12 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:24:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:24:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:24:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:24:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:24:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:24:19 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=h1, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-03 16:24:19 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 16:24:19 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:24:19 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:24:19 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:24:19 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:24:19 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:24:19 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:24:19 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:24:19 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 16:24:19 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 16:24:19 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:24:19 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:24:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 16:24:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 16:24:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:24:19 DEBUG SClient4WPS:687 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:24:19 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 16:24:19 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:24:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:24:19 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:24:19 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:24:19 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:24:19 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:24:19 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 16:24:19 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 16:24:19 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:24:19 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:24:19 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:24:19 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 16:24:19 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:24:19 DEBUG SClient4WPS:687 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:24:19 DEBUG SClient4WPS:695 - UserInputs= key:HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:24:19 DEBUG SClient4WPS:695 - UserInputs= key:HCAF_Table_Names, value=h1 -2016-05-03 16:24:19 DEBUG SClient4WPS:754 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:24:19 DEBUG SClient4WPS:737 - Configuring Literal: HCAF_Table_Names to: h1 -2016-05-03 16:24:19 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:24:19 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2142356} -2016-05-03 16:24:19 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1871579}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:24:19 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1871579} -2016-05-03 16:24:19 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:260212} -2016-05-03 16:24:19 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1556149} -2016-05-03 16:24:19 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1871578} -2016-05-03 16:24:19 DEBUG SClient4WPS:385 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1 - - - - - - - non_deterministic_output - - - - -2016-05-03 16:24:19 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 16:24:19 DEBUG SClient4WPS:404 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496 -2016-05-03 16:24:19 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:24:19 DEBUG SClient4WPS:774 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496 -2016-05-03 16:24:19 DEBUG SClient4WPS:700 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496 -2016-05-03 16:24:19 DEBUG SClient4WPS:711 - ComputationId: ComputationId [id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496] -2016-05-03 16:24:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 16:24:30 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 16:24:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:24:30 DEBUG SClient4WPS:790 - GetComputationStatus(): ComputationId=ComputationId [id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496] -2016-05-03 16:24:30 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 16:24:30 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 16:24:30 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496 -2016-05-03 16:24:30 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 16:24:30 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 16:24:30 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 16:24:30 DEBUG SClient4WPS:806 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - Process successful - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/aXdMb29OOVY3cEUxTGk5SGllRlE5YXh0bGVpWTl1NklHbWJQNStIS0N6Yz0 - Average_Ice_Concentration - image/png - - - http://data-d.d4science.org/Qm5Bd3BsR1BIWkkxTGk5SGllRlE5YTJ2L2EyTFMzcllHbWJQNStIS0N6Yz0 - Average_SST - image/png - - - http://data-d.d4science.org/Q08wdm1HZ0tkYWsxTGk5SGllRlE5UVgvbXZXSEFQVnpHbWJQNStIS0N6Yz0 - Average_Salinity - image/png - - - - - - - - -2016-05-03 16:24:30 DEBUG SClient4WPS:864 - WPS SUCCESS -2016-05-03 16:24:30 DEBUG SClient4WPS:889 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-03 16:24:30 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=174ad7a0-9e3c-4a1f-b42f-fcf6287ca496] -2016-05-03 16:24:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:24:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:24:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:24:30 ERROR DataMinerManagerServiceImpl:242 - Error in getResourceByComputationId: null -2016-05-03 16:25:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:25:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:26:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:26:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:27:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:27:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:28:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:28:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:29:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:29:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:30:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:30:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:31:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:31:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:33:24 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 16:33:24 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 16:33:24 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 16:33:24 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 16:33:24 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 16:33:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:33:24 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 16:33:24 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@72ab00bc -2016-05-03 16:33:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:24 INFO ASLSession:352 - Logging the entrance -2016-05-03 16:33:24 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 16:33:24 DEBUG TemplateModel:83 - 2016-05-03 16:33:24, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 16:33:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:33:24 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 16:33:26 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 16:33:26 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 16:33:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:33:26 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 16:33:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:33:26 INFO ASLSession:352 - Logging the entrance -2016-05-03 16:33:26 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 16:33:26 DEBUG TemplateModel:83 - 2016-05-03 16:33:26, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 16:33:26 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:33:26 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 16:33:26 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 135 ms -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 16:33:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 16:33:26 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 16:33:26 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:33:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 16:33:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2160d362 -2016-05-03 16:33:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@148da147 -2016-05-03 16:33:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4ad0a072 -2016-05-03 16:33:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2d173b53 -2016-05-03 16:33:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 103 ms -2016-05-03 16:33:26 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 16:33:26 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 16:33:26 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 16:33:26 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 16:33:26 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 16:33:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:33:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:33:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 16:33:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 18 ms -2016-05-03 16:33:26 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 16:33:26 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:33:26 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 16:33:26 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:33:27 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 16:33:27 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 16:33:27 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 16:33:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:33:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:33:27 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 16:33:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:27 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 16:33:27 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 16:33:27 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 16:33:27 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 16:33:27 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 16:33:27 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 16:33:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 16:33:27 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:33:27 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 16:33:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 217 ms -2016-05-03 16:33:27 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 16:33:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:27 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 16:33:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:27 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 16:33:27 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 16:33:28 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 16:33:28 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 16:33:28 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 16:33:28 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 16:33:28 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 16:33:28 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 16:33:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:28 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:33:28 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 16:33:28 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:33:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 16:33:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:29 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:33:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 16:33:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:29 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:33:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 16:33:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:29 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:33:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 16:33:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:30 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 16:33:30 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 16:33:30 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:30 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 16:33:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:33:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:33:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:30 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 16:33:30 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 16:33:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 16:33:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:30 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:33:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:33:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:33:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:30 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 16:33:30 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 16:33:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 16:33:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:30 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:33:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 16:33:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 16:33:30 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 16:33:30 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 16:33:30 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 16:33:30 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 16:33:30 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 16:33:30 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:33:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 16:33:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 23 ms -2016-05-03 16:33:30 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 16:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:30 INFO WorkspaceExplorerServiceImpl:188 - end time - 269 msc 0 sec -2016-05-03 16:33:30 INFO WorkspaceExplorerServiceImpl:188 - end time - 219 msc 0 sec -2016-05-03 16:33:30 INFO WorkspaceExplorerServiceImpl:188 - end time - 160 msc 0 sec -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:33:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:33:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:33:33 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 16:33:33 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:33:33 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:33:33 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 16:33:33 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 16:33:33 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 16:33:33 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 16:33:33 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 16:33:33 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 16:33:33 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:33:33 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 16:33:33 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:33:33 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:33:33 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:33:33 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:33:33 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:33:33 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:33:33 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:33:33 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 16:33:33 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 16:33:33 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:33:33 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:33:33 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 16:33:33 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 16:33:33 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:33:33 DEBUG SClient4WPS:652 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:33:33 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 16:33:33 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:33:33 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:33:33 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:33:33 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:33:33 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:33:33 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:33:33 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 16:33:33 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 16:33:33 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:33:33 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:33:33 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:33:33 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 16:33:33 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:33:33 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:33:33 DEBUG SClient4WPS:656 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:33:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:33:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:33:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:33:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:33:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:33:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:33:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:33:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:33:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:33:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:33:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:33:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:33:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:33:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:33:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:33:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:33:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:33:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:33:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 195 msc 0 sec -2016-05-03 16:33:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:33:39 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:33:39 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:33:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:33:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:33:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:33:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:39 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:33:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:33:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:39 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:33:39 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:33:39 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:33:39 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:33:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:33:39 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:33:39 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 16:33:39 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 16:33:39 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:33:39 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:33:39 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:33:39 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:33:39 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:33:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:33:39 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:33:39 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:33:39 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:33:39 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:33:39 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:33:39 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:33:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:33:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:33:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:33:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:39 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:33:39 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:33:39 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:39 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:33:39 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:39 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@774642df, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@45c52c78, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@13ea9e11, socketFactory=javax.net.DefaultSocketFactory@102f784e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:33:39 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:33:39 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:33:39 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:33:39 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:33:39 INFO WorkspaceExplorerServiceImpl:188 - end time - 48 msc 0 sec -2016-05-03 16:33:39 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:33:39 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:33:39 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:260507}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1871958}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1551638, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1693632, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:39 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:33:39 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:39 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:39 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:39 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1871959}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2142592}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=921894, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871959}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG command:56 - Command execution completed -2016-05-03 16:33:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871959}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG command:56 - Command execution completed -2016-05-03 16:33:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871959}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG command:56 - Command execution completed -2016-05-03 16:33:39 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:33:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871959}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG command:56 - Command execution completed -2016-05-03 16:33:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1871959}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG command:56 - Command execution completed -2016-05-03 16:33:39 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1556387}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1474861, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:39 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1871959}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:33:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:33:40 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:33:40 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:33:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:33:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:33:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:33:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:40 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:33:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:33:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:40 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:33:40 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:33:40 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:33:40 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:33:40 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:33:40 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:33:40 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 16:33:40 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:33:40 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:33:40 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:33:40 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:33:40 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:33:40 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:33:40 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:33:40 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:33:40 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:33:40 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:33:40 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:33:40 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:33:40 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:40 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:40 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:40 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@774642df, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@45c52c78, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@13ea9e11, socketFactory=javax.net.DefaultSocketFactory@102f784e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:33:40 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:33:40 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:33:40 DEBUG query:56 - Query completed -2016-05-03 16:33:40 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 16:33:40 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2142592} -2016-05-03 16:33:40 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:260507} -2016-05-03 16:33:40 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1556387} -2016-05-03 16:33:40 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1871959}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:33:40 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1871959} -2016-05-03 16:33:40 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1871958} -2016-05-03 16:33:40 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:33:40 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:33:40 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:33:40 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 16:33:40 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:260508}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1367578, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:40 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:33:40 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:40 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:40 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2142594}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1047854, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:40 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1871961}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1555606, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:40 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:33:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:33:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:33:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:33:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:33:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:33:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:40 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1556388}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:40 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1530691, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:33:40 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:33:40 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:33:40 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1871962}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871962}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG command:56 - Command execution completed -2016-05-03 16:33:40 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871962}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG command:56 - Command execution completed -2016-05-03 16:33:40 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871962}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG command:56 - Command execution completed -2016-05-03 16:33:40 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:33:40 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871962}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG command:56 - Command execution completed -2016-05-03 16:33:40 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1871962}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG command:56 - Command execution completed -2016-05-03 16:33:40 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1871962}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:33:40 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:33:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 41 msc 0 sec -2016-05-03 16:33:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:33:40 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:33:40 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:33:40 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:33:40 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:33:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:33:40 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:33:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:33:41 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:33:41 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:33:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:33:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:33:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:33:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:41 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:33:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:33:41 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:33:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:33:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:41 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:33:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:33:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:33:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:41 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:33:41 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:33:41 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:33:41 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 16:33:41 DEBUG query:56 - Query completed -2016-05-03 16:33:41 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 16:33:41 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2142594} -2016-05-03 16:33:41 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:260508} -2016-05-03 16:33:41 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1556388} -2016-05-03 16:33:41 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1871962}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:33:41 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1871962} -2016-05-03 16:33:41 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:33:41 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1871961} -2016-05-03 16:33:41 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:33:41 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:33:41 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 16:33:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:33:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:33:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:33:42 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 16:33:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:42 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:33:42 DEBUG ServiceEngine:193 - get() - start -2016-05-03 16:33:42 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:33:42 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:33:42 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 16:33:42 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:33:42 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:33:42 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:33:42 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 16:33:42 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:33:42 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:33:42 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:33:42 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:33:42 DEBUG Operation:173 - get(String) - start -2016-05-03 16:33:42 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:33:42 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:33:42 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:33:42 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:33:42 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:42 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:42 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@774642df, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@45c52c78, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@13ea9e11, socketFactory=javax.net.DefaultSocketFactory@102f784e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:33:42 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:33:42 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1871963}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1265889, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:42 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:33:42 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:42 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:42 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2142596}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1235197, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:260509}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1247387, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1556389}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1440187, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1871964}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:33:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:33:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:33:42 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG query:56 - Query completed -2016-05-03 16:33:42 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 16:33:42 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:33:42 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 16:33:42 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG update:56 - Update completed -2016-05-03 16:33:42 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1871964}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG query:56 - Query completed -2016-05-03 16:33:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:33:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:33:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:33:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:33:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:33:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:33:42 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:33:42 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 16:33:42 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 16:33:42 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 16:33:42 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:33:42 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:33:42 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 16:33:42 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:33:42 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 16:33:42 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:33:42 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 16:33:42 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 16:33:42 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:33:42 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:33:42 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:33:42 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:33:42 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:33:42 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:33:42 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:33:42 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:42 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:42 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@774642df, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@45c52c78, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@13ea9e11, socketFactory=javax.net.DefaultSocketFactory@102f784e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:33:42 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:33:42 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:260510}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1321499, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:42 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:33:42 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:42 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2142597}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1871965}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=886706, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1438145, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:42 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1556390}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1385096, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:33:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:33:42 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1871966}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871966}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871966}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871966}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:33:42 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:33:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871966}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1871966}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG command:56 - Command execution completed -2016-05-03 16:33:42 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:33:42 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1871966}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:33:42 DEBUG query:56 - Query completed -2016-05-03 16:33:42 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 16:33:42 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2142597} -2016-05-03 16:33:42 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:260510} -2016-05-03 16:33:42 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1556390} -2016-05-03 16:33:42 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1871966}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:33:42 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1871966} -2016-05-03 16:33:42 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:33:42 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1871965} -2016-05-03 16:33:42 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:33:42 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:33:42 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:33:42 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:33:42 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 16:33:42 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:33:42 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:33:42 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:33:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:33:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:33:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:33:47 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=h1, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-03 16:33:47 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 16:33:47 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:33:47 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:33:47 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:33:47 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:33:47 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:33:47 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:33:47 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:33:47 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 16:33:47 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 16:33:47 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:33:47 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:33:47 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 16:33:47 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 16:33:47 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:33:47 DEBUG SClient4WPS:684 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:33:47 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 16:33:47 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:33:47 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:33:47 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:33:47 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:33:47 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:33:47 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:33:47 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 16:33:47 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 16:33:47 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:33:47 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:33:47 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:33:47 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 16:33:47 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:33:47 DEBUG SClient4WPS:684 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:33:47 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:33:47 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_Names, value=h1 -2016-05-03 16:33:47 DEBUG SClient4WPS:753 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:33:47 DEBUG SClient4WPS:736 - Configuring Literal: HCAF_Table_Names to: h1 -2016-05-03 16:33:47 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:33:49 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1 - - - - - - - non_deterministic_output - - - - -2016-05-03 16:33:49 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 16:33:49 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2142596} -2016-05-03 16:33:49 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:260509} -2016-05-03 16:33:49 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1556389} -2016-05-03 16:33:49 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1871964}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:33:49 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1871964} -2016-05-03 16:33:49 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1871963} -2016-05-03 16:33:49 DEBUG SClient4WPS:403 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=122bae8a-65eb-428d-affd-609234589e08 -2016-05-03 16:33:49 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:33:49 DEBUG SClient4WPS:773 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=122bae8a-65eb-428d-affd-609234589e08 -2016-05-03 16:33:49 DEBUG SClient4WPS:698 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=122bae8a-65eb-428d-affd-609234589e08 -2016-05-03 16:33:49 DEBUG SClient4WPS:709 - ComputationId: ComputationId [id=122bae8a-65eb-428d-affd-609234589e08, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=122bae8a-65eb-428d-affd-609234589e08] -2016-05-03 16:33:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:33:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:33:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:33:59 DEBUG SClient4WPS:789 - GetComputationStatus(): ComputationId=ComputationId [id=122bae8a-65eb-428d-affd-609234589e08, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=122bae8a-65eb-428d-affd-609234589e08] -2016-05-03 16:33:59 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 16:33:59 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 16:33:59 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=122bae8a-65eb-428d-affd-609234589e08 -2016-05-03 16:33:59 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 16:33:59 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 16:33:59 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 16:33:59 DEBUG SClient4WPS:805 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - Process successful - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/cjhubWdhV21Mc0UxTGk5SGllRlE5WDV2KzVnMi9JTmZHbWJQNStIS0N6Yz0 - Average_Ice_Concentration - image/png - - - http://data-d.d4science.org/T0JGN2pWYVd1UmsxTGk5SGllRlE5VHhjd210bFdSbHRHbWJQNStIS0N6Yz0 - Average_SST - image/png - - - http://data-d.d4science.org/UTNMdDVDVnowcTAxTGk5SGllRlE5WDRJOGJBTGwvN3JHbWJQNStIS0N6Yz0 - Average_Salinity - image/png - - - - - - - - -2016-05-03 16:33:59 DEBUG SClient4WPS:863 - WPS SUCCESS -2016-05-03 16:33:59 DEBUG SClient4WPS:888 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-03 16:33:59 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=122bae8a-65eb-428d-affd-609234589e08, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=122bae8a-65eb-428d-affd-609234589e08] -2016-05-03 16:33:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:33:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:33:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:33:59 DEBUG SClient4WPS:423 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=122bae8a-65eb-428d-affd-609234589e08 -2016-05-03 16:33:59 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=122bae8a-65eb-428d-affd-609234589e08 -2016-05-03 16:33:59 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 16:33:59 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 16:33:59 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 16:33:59 DEBUG SClient4WPS:434 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - Process successful - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/cjhubWdhV21Mc0UxTGk5SGllRlE5WDV2KzVnMi9JTmZHbWJQNStIS0N6Yz0 - Average_Ice_Concentration - image/png - - - http://data-d.d4science.org/T0JGN2pWYVd1UmsxTGk5SGllRlE5VHhjd210bFdSbHRHbWJQNStIS0N6Yz0 - Average_SST - image/png - - - http://data-d.d4science.org/UTNMdDVDVnowcTAxTGk5SGllRlE5WDRJOGJBTGwvN3JHbWJQNStIS0N6Yz0 - Average_Salinity - image/png - - - - - - - - -2016-05-03 16:33:59 DEBUG SClient4WPS:958 - Process Executed -2016-05-03 16:33:59 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-03 16:33:59 DEBUG SClient4WPS:574 - Node Name: ogr:FeatureCollection -2016-05-03 16:33:59 DEBUG SClient4WPS:574 - Node Name: gml:featureMember -2016-05-03 16:33:59 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-03 16:33:59 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/cjhubWdhV21Mc0UxTGk5SGllRlE5WDV2KzVnMi9JTmZHbWJQNStIS0N6Yz0 -2016-05-03 16:33:59 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Average_Ice_Concentration -2016-05-03 16:33:59 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-03 16:33:59 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-03 16:33:59 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/T0JGN2pWYVd1UmsxTGk5SGllRlE5VHhjd210bFdSbHRHbWJQNStIS0N6Yz0 -2016-05-03 16:33:59 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Average_SST -2016-05-03 16:33:59 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-03 16:33:59 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-03 16:33:59 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/UTNMdDVDVnowcTAxTGk5SGllRlE5WDRJOGJBTGwvN3JHbWJQNStIS0N6Yz0 -2016-05-03 16:33:59 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Average_Salinity -2016-05-03 16:33:59 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-03 16:33:59 DEBUG SClient4WPS:503 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/cjhubWdhV21Mc0UxTGk5SGllRlE5WDV2KzVnMi9JTmZHbWJQNStIS0N6Yz0, description=Average_Ice_Concentration, mimeType=image/png] -2016-05-03 16:33:59 DEBUG SClient4WPS:503 - ResponseWPS Map: F1-->ResponseWPS [data=http://data-d.d4science.org/T0JGN2pWYVd1UmsxTGk5SGllRlE5VHhjd210bFdSbHRHbWJQNStIS0N6Yz0, description=Average_SST, mimeType=image/png] -2016-05-03 16:33:59 DEBUG SClient4WPS:503 - ResponseWPS Map: F2-->ResponseWPS [data=http://data-d.d4science.org/UTNMdDVDVnowcTAxTGk5SGllRlE5WDRJOGJBTGwvN3JHbWJQNStIS0N6Yz0, description=Average_Salinity, mimeType=image/png] -2016-05-03 16:33:59 DEBUG SClient4WPS:1006 - Adding OBJ:F0 -2016-05-03 16:33:59 DEBUG SClient4WPS:1012 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/cjhubWdhV21Mc0UxTGk5SGllRlE5WDV2KzVnMi9JTmZHbWJQNStIS0N6Yz0, name=F0, description=Average_Ice_Concentration, typology=OBJECT] -2016-05-03 16:33:59 DEBUG SClient4WPS:1006 - Adding OBJ:F1 -2016-05-03 16:33:59 DEBUG SClient4WPS:1012 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/T0JGN2pWYVd1UmsxTGk5SGllRlE5VHhjd210bFdSbHRHbWJQNStIS0N6Yz0, name=F1, description=Average_SST, typology=OBJECT] -2016-05-03 16:33:59 DEBUG SClient4WPS:1006 - Adding OBJ:F2 -2016-05-03 16:33:59 DEBUG SClient4WPS:1012 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/UTNMdDVDVnowcTAxTGk5SGllRlE5WDRJOGJBTGwvN3JHbWJQNStIS0N6Yz0, name=F2, description=Average_Salinity, typology=OBJECT] -2016-05-03 16:33:59 DEBUG Log:91 - Resoure: MapResource [map={F0=ImagesResource [link=http://data-d.d4science.org/cjhubWdhV21Mc0UxTGk5SGllRlE5WDV2KzVnMi9JTmZHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F0, getName()=Average_Ice_Concentration, getDescription()=Average_Ice_Concentration, getResourceType()=IMAGES], F1=ImagesResource [link=http://data-d.d4science.org/T0JGN2pWYVd1UmsxTGk5SGllRlE5VHhjd210bFdSbHRHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F1, getName()=Average_SST, getDescription()=Average_SST, getResourceType()=IMAGES], F2=ImagesResource [link=http://data-d.d4science.org/UTNMdDVDVnowcTAxTGk5SGllRlE5WDRJOGJBTGwvN3JHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F2, getName()=Average_Salinity, getDescription()=Average_Salinity, getResourceType()=IMAGES]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-03 16:34:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:34:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:34:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:34:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:34:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:34:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:34:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:34:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:34:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:34:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:34:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:34:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:34:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:34:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:34:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:34:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:34:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:34:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:34:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:34:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:34:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:34:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:34:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:34:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:34:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:34:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:34:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:34:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:34:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:34:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:34:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:34:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:34:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:34:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:34:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:34:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:34:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:34:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:34:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:34:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 2672 msc 2 sec -2016-05-03 16:34:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:34:40 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:34:40 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:34:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:34:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:34:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:34:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:40 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:34:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:34:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:34:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:34:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:34:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:34:40 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:34:40 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:34:40 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:34:40 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:34:40 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 16:34:40 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 16:34:40 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:34:40 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:34:40 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:34:40 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:34:40 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:34:40 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:34:40 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:34:40 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:34:40 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:34:40 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:34:40 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:34:40 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:40 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:40 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:40 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@774642df, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@45c52c78, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@13ea9e11, socketFactory=javax.net.DefaultSocketFactory@102f784e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:34:40 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:34:40 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:34:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:34:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:34:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:34:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:40 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:260728}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3699536, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:40 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:34:40 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:40 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:34:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:40 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1872267}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:34:40 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=4791517, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:40 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:34:40 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:34:40 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:34:40 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1872268}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872268}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG command:56 - Command execution completed -2016-05-03 16:34:40 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872268}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG command:56 - Command execution completed -2016-05-03 16:34:40 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872268}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG command:56 - Command execution completed -2016-05-03 16:34:40 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:34:40 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872268}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG command:56 - Command execution completed -2016-05-03 16:34:40 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872268}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:34:40 DEBUG command:56 - Command execution completed -2016-05-03 16:34:40 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1872268}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2142752}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=851115, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:40 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1556546}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 45 msc 0 sec -2016-05-03 16:34:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=4140404, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.1 ms, state=CONNECTED}] -2016-05-03 16:34:40 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:34:40 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:34:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.1 ms, state=CONNECTED}] -2016-05-03 16:34:41 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:34:41 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:34:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:34:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:41 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:41 DEBUG query:56 - Query completed -2016-05-03 16:34:41 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 16:34:41 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2142752} -2016-05-03 16:34:41 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:260728} -2016-05-03 16:34:41 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1872268}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:34:41 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1872268} -2016-05-03 16:34:41 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1556546} -2016-05-03 16:34:41 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:34:41 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:34:41 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1872267} -2016-05-03 16:34:41 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:34:41 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:34:41 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:34:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:34:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:34:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:34:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:34:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:34:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:34:43 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:34:43 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:34:43 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:34:43 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:34:43 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:34:43 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:34:43 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 16:34:43 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:34:43 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:34:43 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:34:43 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:34:43 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:34:43 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:34:43 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:34:43 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:34:43 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:34:43 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:34:43 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:34:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 104 msc 0 sec -2016-05-03 16:34:43 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:34:43 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:43 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:43 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:43 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@774642df, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@45c52c78, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@13ea9e11, socketFactory=javax.net.DefaultSocketFactory@102f784e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:34:43 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:34:43 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:34:43 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:34:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:34:43 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:34:43 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:260729}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1872269}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1165429, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:43 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:34:43 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:43 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1356700, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:43 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:43 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2142756}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=896638, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:34:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:34:43 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1556549}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1149062, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 16:34:43 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1872271}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872271}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG command:56 - Command execution completed -2016-05-03 16:34:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872271}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG command:56 - Command execution completed -2016-05-03 16:34:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872271}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG command:56 - Command execution completed -2016-05-03 16:34:43 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:34:43 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872271}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG command:56 - Command execution completed -2016-05-03 16:34:43 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872271}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG command:56 - Command execution completed -2016-05-03 16:34:43 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1872271}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 16:34:44 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:34:44 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:44 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:34:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:34:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:44 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:34:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:34:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:44 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:34:44 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:34:44 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:34:44 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 16:34:44 DEBUG query:56 - Query completed -2016-05-03 16:34:44 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 16:34:44 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2142756} -2016-05-03 16:34:44 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:260729} -2016-05-03 16:34:44 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1872271}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:34:44 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1872271} -2016-05-03 16:34:44 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1556549} -2016-05-03 16:34:44 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:34:44 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1872269} -2016-05-03 16:34:44 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:34:44 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:34:44 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:34:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:34:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:34:44 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-03 16:34:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:44 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:34:45 DEBUG ServiceEngine:193 - get() - start -2016-05-03 16:34:45 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:34:45 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:34:45 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 16:34:45 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:34:45 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:34:45 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:34:45 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 16:34:45 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:34:45 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:34:45 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:34:45 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:34:45 DEBUG Operation:173 - get(String) - start -2016-05-03 16:34:45 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:34:45 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:34:45 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:34:45 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:34:45 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:45 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:45 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:45 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@774642df, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@45c52c78, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@13ea9e11, socketFactory=javax.net.DefaultSocketFactory@102f784e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:34:45 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:34:45 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:34:45 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:260740}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1308658, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:45 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:34:45 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:45 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:45 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1872283}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2142763}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1312730, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:45 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=881242, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:45 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1556556}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1337722, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 16:34:45 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1872284}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG command:56 - Command execution completed -2016-05-03 16:34:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG command:56 - Command execution completed -2016-05-03 16:34:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG command:56 - Command execution completed -2016-05-03 16:34:45 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:34:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG command:56 - Command execution completed -2016-05-03 16:34:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG command:56 - Command execution completed -2016-05-03 16:34:45 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:34:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG command:56 - Command execution completed -2016-05-03 16:34:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG command:56 - Command execution completed -2016-05-03 16:34:45 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:34:45 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG query:56 - Query completed -2016-05-03 16:34:45 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 16:34:45 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:34:45 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 16:34:45 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG update:56 - Update completed -2016-05-03 16:34:45 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1872284}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG query:56 - Query completed -2016-05-03 16:34:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:34:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:34:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:34:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:34:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:34:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:34:45 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:34:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 16:34:51 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-03 16:34:51 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 16:34:51 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 16:34:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:34:51 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:34:51 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 16:34:51 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:34:51 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 16:34:51 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:34:51 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 16:34:51 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 16:34:51 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:34:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:34:51 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:34:51 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:34:51 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:34:51 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:34:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:34:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:51 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:51 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:51 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@774642df, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@45c52c78, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@13ea9e11, socketFactory=javax.net.DefaultSocketFactory@102f784e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:34:51 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:34:51 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:34:51 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1872287}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1555351, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:34:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:34:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:260741}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1295852, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:51 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2142765}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1139486, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:34:51 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1556558}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1243642, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:34:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 16:34:51 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1872288}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872288}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG command:56 - Command execution completed -2016-05-03 16:34:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872288}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG command:56 - Command execution completed -2016-05-03 16:34:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872288}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG command:56 - Command execution completed -2016-05-03 16:34:51 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:34:51 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:34:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872288}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG command:56 - Command execution completed -2016-05-03 16:34:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872288}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG command:56 - Command execution completed -2016-05-03 16:34:51 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:34:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1872288}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:34:51 DEBUG query:56 - Query completed -2016-05-03 16:34:51 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2142765} -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:260741} -2016-05-03 16:34:51 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1872288}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1872288} -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1556558} -2016-05-03 16:34:51 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1872287} -2016-05-03 16:34:51 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:34:51 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 16:34:51 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 16:34:51 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 16:34:51 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 16:34:51 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 16:34:51 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 16:34:51 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2142763} -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1556556} -2016-05-03 16:34:51 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1872284}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1872284} -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:260740} -2016-05-03 16:34:51 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1872283} -2016-05-03 16:35:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:35:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:35:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:35:01 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=h1|h2, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-03 16:35:01 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 16:35:01 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:35:01 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:35:01 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:35:01 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:35:01 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:35:01 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:35:01 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:35:01 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 16:35:01 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 16:35:01 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:35:01 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:35:01 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 16:35:01 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 16:35:01 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:35:01 DEBUG SClient4WPS:684 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:35:01 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 16:35:01 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:35:01 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:35:01 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:35:01 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:35:01 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:35:01 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:35:01 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 16:35:01 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 16:35:01 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:35:01 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:35:01 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:35:01 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 16:35:01 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:35:01 DEBUG SClient4WPS:684 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:35:01 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 16:35:01 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_Names, value=h1|h2 -2016-05-03 16:35:01 DEBUG SClient4WPS:753 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 16:35:01 DEBUG SClient4WPS:736 - Configuring Literal: HCAF_Table_Names to: h1|h2 -2016-05-03 16:35:01 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:35:01 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1|h2 - - - - - - - non_deterministic_output - - - - -2016-05-03 16:35:01 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 16:35:01 DEBUG SClient4WPS:403 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6f741251-a88b-49ed-98ea-1c85ce26358b -2016-05-03 16:35:01 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:35:01 DEBUG SClient4WPS:773 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6f741251-a88b-49ed-98ea-1c85ce26358b -2016-05-03 16:35:01 DEBUG SClient4WPS:698 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6f741251-a88b-49ed-98ea-1c85ce26358b -2016-05-03 16:35:01 DEBUG SClient4WPS:709 - ComputationId: ComputationId [id=6f741251-a88b-49ed-98ea-1c85ce26358b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6f741251-a88b-49ed-98ea-1c85ce26358b] -2016-05-03 16:35:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:35:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:35:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:35:11 DEBUG SClient4WPS:789 - GetComputationStatus(): ComputationId=ComputationId [id=6f741251-a88b-49ed-98ea-1c85ce26358b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6f741251-a88b-49ed-98ea-1c85ce26358b] -2016-05-03 16:35:11 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 16:35:11 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 16:35:11 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6f741251-a88b-49ed-98ea-1c85ce26358b -2016-05-03 16:35:11 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 16:35:11 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 16:35:11 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 16:35:11 DEBUG SClient4WPS:805 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - - org.n52.wps.server.ExceptionReport: Error occured while parsing XML - - - - - -2016-05-03 16:35:11 DEBUG SClient4WPS:850 - WPS FAILURE: - - org.n52.wps.server.ExceptionReport: Error occured while parsing XML - - OR PAUSED: null -2016-05-03 16:35:11 DEBUG SClient4WPS:888 - ComputationStatus: ComputationStatus [percentage=100.0, status=FAILED, endDate=null, message=null, errResource=null] -2016-05-03 16:35:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:35:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:36:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:36:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:37:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:37:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:37:57 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 16:37:57 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 16:37:57 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 16:37:57 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 16:37:57 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 16:37:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:37:57 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 16:37:57 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@2b04d685 -2016-05-03 16:37:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:37:57 INFO ASLSession:352 - Logging the entrance -2016-05-03 16:37:57 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 16:37:57 DEBUG TemplateModel:83 - 2016-05-03 16:37:57, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 16:37:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:37:57 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 16:37:59 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 16:37:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 16:37:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:37:59 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 16:37:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:37:59 INFO ASLSession:352 - Logging the entrance -2016-05-03 16:37:59 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 16:37:59 DEBUG TemplateModel:83 - 2016-05-03 16:37:59, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 16:37:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:37:59 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 16:37:59 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 119 ms -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 16:37:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 16:37:59 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 16:37:59 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:37:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 16:37:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7ef58f23 -2016-05-03 16:37:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@742f937d -2016-05-03 16:37:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@344a6c94 -2016-05-03 16:37:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@5f773a -2016-05-03 16:37:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 104 ms -2016-05-03 16:37:59 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 16:37:59 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 16:37:59 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 16:37:59 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 16:37:59 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 16:37:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:37:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:37:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 16:37:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 22 ms -2016-05-03 16:37:59 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 16:37:59 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:37:59 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 16:37:59 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:38:00 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 16:38:00 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 16:38:00 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 16:38:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:38:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:38:00 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 16:38:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:00 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 16:38:00 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 16:38:00 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 16:38:00 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 16:38:00 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 16:38:00 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 16:38:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 16:38:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:38:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 16:38:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 174 ms -2016-05-03 16:38:00 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 16:38:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:00 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 16:38:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:00 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 16:38:00 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 16:38:00 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:38:00 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 16:38:01 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 16:38:01 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 16:38:01 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 16:38:01 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 16:38:01 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:01 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:38:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 16:38:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:38:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 16:38:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:38:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 16:38:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 16:38:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 16:38:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:02 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 16:38:02 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 16:38:02 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:02 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 16:38:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:02 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 16:38:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:02 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:02 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:02 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 16:38:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:38:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 16:38:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:38:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:38:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 16:38:02 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 16:38:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 16:38:02 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 16:38:02 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 16:38:02 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 16:38:02 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:38:02 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:38:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 16:38:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 16:38:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 23 ms -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:38:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 16:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 345 msc 0 sec -2016-05-03 16:38:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 175 msc 0 sec -2016-05-03 16:38:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 298 msc 0 sec -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:38:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:38:13 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 16:38:13 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:38:13 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:38:13 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 16:38:13 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 16:38:13 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 16:38:13 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 16:38:13 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 16:38:13 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 16:38:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:38:13 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 16:38:13 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:38:13 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:38:13 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:38:13 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:38:13 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:38:13 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:38:13 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:38:13 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 16:38:13 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 16:38:13 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:38:13 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:38:13 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 16:38:13 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 16:38:13 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:38:13 DEBUG SClient4WPS:652 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:38:13 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 16:38:13 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:38:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:38:13 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:38:13 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:38:13 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:38:13 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:38:13 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 16:38:13 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 16:38:13 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:38:13 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:38:13 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:38:13 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 16:38:13 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:38:13 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:38:13 DEBUG SClient4WPS:656 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:13 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:13 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:38:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:38:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:13 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:38:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:38:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:38:15 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:38:15 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:38:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:38:15 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:38:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:38:15 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:38:15 INFO WorkspaceExplorerServiceImpl:142 - end time - 1200 msc 1 sec -2016-05-03 16:38:15 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:38:26 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:26 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:26 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:26 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:38:26 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:38:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:26 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:26 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 16:38:26 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 16:38:26 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:38:26 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:38:26 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:38:26 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:38:26 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:38:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:26 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:26 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:38:26 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:38:26 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:26 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:26 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:38:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:26 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:26 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:38:26 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:26 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:26 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:38:26 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6f557141, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73b7dede, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2c88fc2c, socketFactory=javax.net.DefaultSocketFactory@5563c38b, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:38:26 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:38:26 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:38:26 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:38:26 INFO WorkspaceExplorerServiceImpl:188 - end time - 75 msc 0 sec -2016-05-03 16:38:26 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:38:26 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:38:26 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:260777}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1872326}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1581190, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1518459, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:26 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:38:26 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:26 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:26 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:26 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1872327}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872327}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG command:56 - Command execution completed -2016-05-03 16:38:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872327}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG command:56 - Command execution completed -2016-05-03 16:38:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872327}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG command:56 - Command execution completed -2016-05-03 16:38:26 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:38:26 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:1556594}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872327}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1489293, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:38:26 DEBUG command:56 - Command execution completed -2016-05-03 16:38:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872327}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG command:56 - Command execution completed -2016-05-03 16:38:26 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1872327}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:2142801}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1218168, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:38:27 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:27 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:27 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:27 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:27 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:27 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:38:27 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:38:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:27 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:27 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 16:38:27 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:38:27 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:38:27 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:38:27 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:38:27 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:38:27 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:38:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:27 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:27 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:38:27 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:38:27 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:38:27 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:38:27 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:27 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:27 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:27 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6f557141, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73b7dede, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2c88fc2c, socketFactory=javax.net.DefaultSocketFactory@5563c38b, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:38:27 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:38:27 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:38:27 DEBUG query:56 - Query completed -2016-05-03 16:38:27 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 16:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:2142801} -2016-05-03 16:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:260777} -2016-05-03 16:38:27 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1872327}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1872327} -2016-05-03 16:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:1556594} -2016-05-03 16:38:27 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1872326} -2016-05-03 16:38:27 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:38:27 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:38:27 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:38:27 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 16:38:27 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1872328}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2183565, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:27 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:38:27 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:27 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:27 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:27 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:260778}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2142802}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1331369, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1110337, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:27 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1556595}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1464998, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:38:27 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1872329}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872329}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:27 DEBUG command:56 - Command execution completed -2016-05-03 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:38:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872329}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:27 DEBUG command:56 - Command execution completed -2016-05-03 16:38:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872329}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG command:56 - Command execution completed -2016-05-03 16:38:27 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:38:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872329}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG command:56 - Command execution completed -2016-05-03 16:38:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872329}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 DEBUG command:56 - Command execution completed -2016-05-03 16:38:27 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1872329}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:27 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:27 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:27 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:38:27 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:38:27 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-03 16:38:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:38:27 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:38:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:38:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:38:28 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:38:28 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:28 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:28 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:28 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:38:28 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:38:28 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:38:28 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 16:38:28 DEBUG query:56 - Query completed -2016-05-03 16:38:28 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 16:38:28 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2142802} -2016-05-03 16:38:28 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:260778} -2016-05-03 16:38:28 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1556595} -2016-05-03 16:38:28 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1872329}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:38:28 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1872329} -2016-05-03 16:38:28 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:38:28 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1872328} -2016-05-03 16:38:28 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:38:28 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:38:28 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:38:29 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 16:38:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:29 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:38:29 DEBUG ServiceEngine:193 - get() - start -2016-05-03 16:38:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:29 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:29 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 16:38:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:38:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:38:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:38:29 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 16:38:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:38:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:29 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:29 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:38:29 DEBUG Operation:173 - get(String) - start -2016-05-03 16:38:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:38:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:38:29 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:38:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:38:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6f557141, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73b7dede, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2c88fc2c, socketFactory=javax.net.DefaultSocketFactory@5563c38b, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:38:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:38:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1872330}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1395662, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:38:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:260779}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2142803}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1230272, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1144252, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1556597}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1463457, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1872331}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:38:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:38:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:38:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG query:56 - Query completed -2016-05-03 16:38:29 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 16:38:29 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:38:29 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 16:38:29 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG update:56 - Update completed -2016-05-03 16:38:29 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1872331}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG query:56 - Query completed -2016-05-03 16:38:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:29 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 16:38:29 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 16:38:29 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 16:38:29 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 16:38:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:29 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:29 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 16:38:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:38:29 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 16:38:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:38:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 16:38:29 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 16:38:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:38:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:29 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:38:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:38:29 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:38:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:38:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6f557141, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73b7dede, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2c88fc2c, socketFactory=javax.net.DefaultSocketFactory@5563c38b, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:38:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:38:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1872332}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:260780}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=988175, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1138484, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:38:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2142804}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=848120, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1556598}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1458834, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 16:38:29 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1872333}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872333}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872333}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872333}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:38:29 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:38:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872333}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872333}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG command:56 - Command execution completed -2016-05-03 16:38:29 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:38:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1872333}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:29 DEBUG query:56 - Query completed -2016-05-03 16:38:29 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 16:38:29 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2142804} -2016-05-03 16:38:29 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:260780} -2016-05-03 16:38:29 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1556598} -2016-05-03 16:38:29 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1872333}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:38:30 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1872333} -2016-05-03 16:38:30 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:38:30 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1872332} -2016-05-03 16:38:30 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 16:38:30 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:38:30 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:38:30 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:38:30 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 16:38:30 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 16:38:30 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:38:30 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 16:38:30 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2142803} -2016-05-03 16:38:30 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:260779} -2016-05-03 16:38:30 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1556597} -2016-05-03 16:38:30 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1872331}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:38:30 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1872331} -2016-05-03 16:38:30 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1872330} -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:38:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:38:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:38:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:38:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:38:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:38:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:38:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:38:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:38:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:38:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:38:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:38:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 16:38:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:36 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 16:38:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 16:38:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 158 msc 0 sec -2016-05-03 16:38:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 16:38:43 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:43 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:43 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:38:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:43 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:43 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:43 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:38:43 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:38:43 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:43 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:43 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 16:38:43 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 16:38:43 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:38:43 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:38:43 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:38:43 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:38:43 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:38:43 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:43 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:43 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:38:43 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:38:43 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:38:43 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:38:43 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:43 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:43 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:43 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6f557141, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73b7dede, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2c88fc2c, socketFactory=javax.net.DefaultSocketFactory@5563c38b, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:38:43 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:38:43 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:38:43 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:260785}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1100585, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:43 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:38:43 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:43 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:43 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2142809}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1165953, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:43 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1872335}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1512237, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:43 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:43 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1556602}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1403111, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:43 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:43 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1872336}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872336}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG command:56 - Command execution completed -2016-05-03 16:38:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872336}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG command:56 - Command execution completed -2016-05-03 16:38:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872336}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG command:56 - Command execution completed -2016-05-03 16:38:43 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:38:43 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872336}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:43 DEBUG command:56 - Command execution completed -2016-05-03 16:38:43 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872336}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG command:56 - Command execution completed -2016-05-03 16:38:43 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1872336}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:38:43 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 16:38:43 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:38:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 52 msc 0 sec -2016-05-03 16:38:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:38:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:38:43 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:38:43 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:38:44 DEBUG query:56 - Query completed -2016-05-03 16:38:44 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 16:38:44 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2142809} -2016-05-03 16:38:44 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:260785} -2016-05-03 16:38:44 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1556602} -2016-05-03 16:38:44 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1872336}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:38:44 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1872336} -2016-05-03 16:38:44 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:38:44 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1872335} -2016-05-03 16:38:44 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:38:44 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 16:38:44 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 16:38:44 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:44 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:44 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:44 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:44 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:44 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:38:44 DEBUG ServiceEngine:306 - get() - start -2016-05-03 16:38:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:44 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:44 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 16:38:44 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 16:38:44 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:38:44 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:38:44 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 16:38:44 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:38:44 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:38:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:44 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:44 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:38:44 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:38:44 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:38:44 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:38:44 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:44 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:44 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:44 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6f557141, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73b7dede, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2c88fc2c, socketFactory=javax.net.DefaultSocketFactory@5563c38b, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:38:44 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:38:44 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:38:44 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:260786}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1158850, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:44 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1872337}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:38:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:44 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1256677, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:44 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:44 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2142810}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=742617, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:38:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:44 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:44 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 16:38:44 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1872338}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872338}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG command:56 - Command execution completed -2016-05-03 16:38:44 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1556603}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872338}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG command:56 - Command execution completed -2016-05-03 16:38:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1237512, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872338}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 16:38:44 DEBUG command:56 - Command execution completed -2016-05-03 16:38:44 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:38:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872338}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG command:56 - Command execution completed -2016-05-03 16:38:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872338}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG command:56 - Command execution completed -2016-05-03 16:38:44 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1872338}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:38:44 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 16:38:44 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 16:38:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-03 16:38:44 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:38:44 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 16:38:44 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 16:38:44 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 16:38:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 16:38:45 DEBUG query:56 - Query completed -2016-05-03 16:38:45 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 16:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:260786} -2016-05-03 16:38:45 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1872338}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2142810} -2016-05-03 16:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1872338} -2016-05-03 16:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1556603} -2016-05-03 16:38:45 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1872337} -2016-05-03 16:38:45 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:38:45 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 16:38:45 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 16:38:45 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:38:45 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:45 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:38:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:45 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:45 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:38:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:38:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:45 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:38:45 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:38:45 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:38:45 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 16:38:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:38:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:38:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:38:46 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-03 16:38:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:46 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:38:46 DEBUG ServiceEngine:193 - get() - start -2016-05-03 16:38:46 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:46 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:46 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 16:38:46 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:38:46 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:38:46 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 16:38:46 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 16:38:46 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:38:46 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:46 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:46 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:38:46 DEBUG Operation:173 - get(String) - start -2016-05-03 16:38:46 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:38:46 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:38:46 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:38:46 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:38:46 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:46 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:46 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6f557141, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73b7dede, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2c88fc2c, socketFactory=javax.net.DefaultSocketFactory@5563c38b, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:38:46 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:38:46 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1872339}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:260788}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1493456, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:46 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:38:46 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:46 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1259287, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:46 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2142811}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=846645, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1556604}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1431820, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1872340}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:38:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:38:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:38:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG query:56 - Query completed -2016-05-03 16:38:46 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 16:38:46 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 16:38:46 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 16:38:46 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG update:56 - Update completed -2016-05-03 16:38:46 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1872340}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG query:56 - Query completed -2016-05-03 16:38:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 16:38:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 16:38:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 16:38:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 16:38:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 16:38:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 16:38:46 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 16:38:46 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-03 16:38:46 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 16:38:46 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 16:38:46 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:46 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:46 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 16:38:46 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 16:38:46 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 16:38:46 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 16:38:46 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 16:38:46 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 16:38:46 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 16:38:46 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 16:38:46 DEBUG BucketCoding:42 - coding name done -2016-05-03 16:38:46 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 16:38:46 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 16:38:46 DEBUG MongoIO:77 - open mongo connection -2016-05-03 16:38:46 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 16:38:46 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:46 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:46 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@6f557141, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73b7dede, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2c88fc2c, socketFactory=javax.net.DefaultSocketFactory@5563c38b, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 16:38:46 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 16:38:46 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:260789}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1335288, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:46 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 16:38:46 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:46 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1872341}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1470615, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:46 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2142813}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=999707, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1556605}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1308885, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 16:38:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 16:38:46 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1872342}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872342}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872342}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872342}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:38:46 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:38:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872342}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872342}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG command:56 - Command execution completed -2016-05-03 16:38:46 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:38:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1872342}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 16:38:46 DEBUG query:56 - Query completed -2016-05-03 16:38:46 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2142813} -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:260789} -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1556605} -2016-05-03 16:38:46 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1872342}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1872342} -2016-05-03 16:38:46 INFO MongoIO:508 - Mongo has been closed -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1872341} -2016-05-03 16:38:46 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 16:38:46 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 16:38:46 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 16:38:46 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 16:38:46 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 16:38:46 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 16:38:46 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 16:38:46 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2142811} -2016-05-03 16:38:46 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1872340}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1872340} -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:260788} -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1556604} -2016-05-03 16:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1872339} -2016-05-03 16:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:38:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 16:38:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 16:38:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:38:56 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0$http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=h1|h2, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-03 16:38:56 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 16:38:56 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 16:38:56 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 16:38:56 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 16:38:56 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 16:38:56 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:38:56 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 16:38:56 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 16:38:56 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 16:38:56 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 16:38:56 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 16:38:56 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 16:38:56 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 16:38:56 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 16:38:56 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:38:56 DEBUG SClient4WPS:684 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 16:38:56 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 16:38:56 DEBUG WPS2SM:92 - WPS type: -2016-05-03 16:38:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 16:38:56 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 16:38:56 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 16:38:56 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 16:38:56 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 16:38:56 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 16:38:56 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 16:38:56 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 16:38:56 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 16:38:56 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 16:38:56 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 16:38:56 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 16:38:56 DEBUG SClient4WPS:684 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 16:38:56 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0$http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 16:38:56 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_Names, value=h1|h2 -2016-05-03 16:38:56 DEBUG SClient4WPS:753 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0$http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 16:38:56 DEBUG SClient4WPS:736 - Configuring Literal: HCAF_Table_Names to: h1|h2 -2016-05-03 16:38:56 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 16:38:57 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1|h2 - - - - - - - non_deterministic_output - - - - -2016-05-03 16:38:57 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 16:38:57 DEBUG SClient4WPS:403 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=bf9148da-f55b-4dae-94d2-dbe6e5613769 -2016-05-03 16:38:57 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 16:38:57 DEBUG SClient4WPS:773 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=bf9148da-f55b-4dae-94d2-dbe6e5613769 -2016-05-03 16:38:57 DEBUG SClient4WPS:698 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=bf9148da-f55b-4dae-94d2-dbe6e5613769 -2016-05-03 16:38:57 DEBUG SClient4WPS:709 - ComputationId: ComputationId [id=bf9148da-f55b-4dae-94d2-dbe6e5613769, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=bf9148da-f55b-4dae-94d2-dbe6e5613769] -2016-05-03 16:39:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:39:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:39:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 16:39:07 DEBUG SClient4WPS:789 - GetComputationStatus(): ComputationId=ComputationId [id=bf9148da-f55b-4dae-94d2-dbe6e5613769, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=bf9148da-f55b-4dae-94d2-dbe6e5613769] -2016-05-03 16:39:07 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 16:39:07 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 16:39:07 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=bf9148da-f55b-4dae-94d2-dbe6e5613769 -2016-05-03 16:39:07 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 16:39:07 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 16:39:07 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 16:39:07 DEBUG SClient4WPS:805 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - - java.lang.RuntimeException: Error in creating the table for wps_0e34434d3f1c4a44aec857d10cde3b64: Input table is not compliant to the required structure - - - - - -2016-05-03 16:39:07 DEBUG SClient4WPS:850 - WPS FAILURE: - - java.lang.RuntimeException: Error in creating the table for wps_0e34434d3f1c4a44aec857d10cde3b64: Input table is not compliant to the required structure - - OR PAUSED: null -2016-05-03 16:39:07 DEBUG SClient4WPS:888 - ComputationStatus: ComputationStatus [percentage=100.0, status=FAILED, endDate=null, message=null, errResource=null] -2016-05-03 16:39:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:39:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:40:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:40:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:41:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:41:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:42:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:42:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:43:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:43:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:44:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:44:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:46:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:46:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:47:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:47:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:48:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:48:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:48:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:49:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:49:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:50:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:50:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:51:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:51:42 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:52:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:52:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:53:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:53:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:54:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 16:54:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 16:55:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 16:55:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 16:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 16:56:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 16:57:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 16:57:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 16:58:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:58:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:59:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:59:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 16:59:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 16:59:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:00:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:00:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:01:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:01:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:02:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:02:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:03:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:03:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:05:35 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 17:05:35 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 17:05:35 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 17:05:35 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:05:35 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:05:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:05:35 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:05:35 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3ea9e7f -2016-05-03 17:05:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:05:35 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:05:35 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:05:35 DEBUG TemplateModel:83 - 2016-05-03 17:05:35, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:05:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:05:35 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 17:05:37 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:05:37 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:05:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:05:37 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:05:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:05:37 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:05:37 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:05:37 DEBUG TemplateModel:83 - 2016-05-03 17:05:37, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:05:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:05:37 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:05:37 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 116 ms -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 17:05:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 17:05:37 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 17:05:38 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:05:38 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:05:38 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:05:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:05:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:05:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:05:38 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 17:05:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:05:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:05:38 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:05:38 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 17:05:38 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 17:05:38 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 17:05:38 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 17:05:38 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 17:05:38 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 17:05:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:05:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:05:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:05:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 17:05:38 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@8ce8cc1 -2016-05-03 17:05:38 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@49a104e7 -2016-05-03 17:05:38 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@735020d1 -2016-05-03 17:05:38 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4d5161b2 -2016-05-03 17:05:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 105 ms -2016-05-03 17:05:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 78 ms -2016-05-03 17:05:38 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 17:05:38 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 17:05:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:05:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:05:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:05:38 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 17:05:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:05:38 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 17:05:38 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 17:05:38 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 17:05:38 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 17:05:38 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 17:05:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:05:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:05:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 17:05:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 16 ms -2016-05-03 17:05:38 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 17:05:38 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:05:38 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 17:05:38 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:05:39 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:05:39 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:05:39 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 17:05:39 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:05:39 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:05:39 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:05:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:05:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:05:39 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:05:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 17:05:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:05:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:05:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:05:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:05:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:05:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:05:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:05:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 17:05:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:05:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:05:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:05:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:05:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:05:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:05:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:05:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 17:05:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:05:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:05:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:05:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:05:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:05:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:05:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:05:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 17:05:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:05:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:05:39 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:05:39 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:05:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:05:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:05:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:05:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:05:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:05:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:05:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:05:40 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 17:05:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:05:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:05:40 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:05:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:05:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:05:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:05:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:05:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:05:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:05:40 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 17:05:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:05:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:05:40 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:05:40 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:05:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:05:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:05:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:05:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:05:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:05:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:05:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:05:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:05:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:05:40 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 17:05:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 29 ms -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 17:05:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:05:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:05:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 17:05:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:05:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 17:05:40 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 17:05:40 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 17:05:40 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 17:05:40 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 17:05:40 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 17:05:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:05:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:05:40 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 17:05:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 17:05:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 165 msc 0 sec -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:05:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 518 msc 0 sec -2016-05-03 17:05:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:05:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:05:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 16 ms -2016-05-03 17:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:05:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:05:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 17:05:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 17:05:41 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 17:05:41 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-03 17:05:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:05:41 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 17:05:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:05:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:05:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:05:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-03 17:05:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:05:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:05:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:05:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:05:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 570 msc 0 sec -2016-05-03 17:06:30 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:06:30 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:06:30 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:06:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:06:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:07:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:07:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:08:42 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 17:08:42 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 17:08:42 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 17:08:42 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:08:42 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:08:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:08:42 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:08:42 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3b72fd3c -2016-05-03 17:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:08:42 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:08:42 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:08:42 DEBUG TemplateModel:83 - 2016-05-03 17:08:42, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:08:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:08:42 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 17:08:43 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:08:43 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:08:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:08:43 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:08:43 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:08:43 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:08:43 DEBUG TemplateModel:83 - 2016-05-03 17:08:43, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:08:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:08:43 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:08:44 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 115 ms -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 17:08:44 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 17:08:44 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 17:08:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:08:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:08:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:08:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:08:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:08:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:08:44 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 17:08:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:44 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 17:08:44 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 17:08:44 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 17:08:44 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 17:08:44 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 17:08:44 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 17:08:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:08:45 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:08:45 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:08:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:08:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 17:08:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@6e7ec3fe -2016-05-03 17:08:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@a733748 -2016-05-03 17:08:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5d694205 -2016-05-03 17:08:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@1fec77ab -2016-05-03 17:08:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-05-03 17:08:45 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 17:08:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 258 ms -2016-05-03 17:08:45 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 17:08:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:08:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:45 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 17:08:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:45 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 17:08:49 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 17:08:49 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 17:08:49 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 17:08:49 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 17:08:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:08:49 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:08:49 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 17:08:49 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 20 ms -2016-05-03 17:08:49 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 17:08:49 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:08:49 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 17:08:49 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:08:50 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:08:50 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:08:50 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 17:08:50 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:08:50 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:08:50 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:50 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:08:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 17:08:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:50 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:08:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 17:08:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:50 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:08:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 17:08:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:50 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:08:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 17:08:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:08:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:08:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:51 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 17:08:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:08:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:08:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:51 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 17:08:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:51 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:08:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:08:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:08:51 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 17:08:51 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:08:51 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:08:51 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 17:08:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 17:08:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:08:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:51 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:08:51 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 17:08:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 17:08:51 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 17:08:51 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 17:08:51 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 17:08:51 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 17:08:51 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:08:51 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:08:51 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:08:51 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:08:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 36 ms -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 17:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:08:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 351 msc 0 sec -2016-05-03 17:08:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 184 msc 0 sec -2016-05-03 17:08:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 344 msc 0 sec -2016-05-03 17:08:51 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:08:51 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 17:08:58 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:08:58 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:08:58 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:08:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:08:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:08:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:08:58 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 17:08:58 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:08:58 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:08:59 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 17:08:59 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 17:08:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 17:08:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 17:08:59 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 17:08:59 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 17:08:59 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:08:59 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 17:08:59 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 17:08:59 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 17:08:59 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 17:08:59 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 17:08:59 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:08:59 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 17:08:59 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 17:08:59 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 17:08:59 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 17:08:59 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 17:08:59 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 17:08:59 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 17:08:59 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 17:08:59 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:08:59 DEBUG SClient4WPS:652 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 17:08:59 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 17:08:59 DEBUG WPS2SM:92 - WPS type: -2016-05-03 17:08:59 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 17:08:59 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 17:08:59 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:08:59 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 17:08:59 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 17:08:59 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 17:08:59 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 17:08:59 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 17:08:59 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 17:08:59 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 17:08:59 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 17:08:59 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:08:59 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 17:08:59 DEBUG SClient4WPS:656 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:08:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:08:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:08:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:08:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:08:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 17:08:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 17:08:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:08:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:08:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:08:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:08:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:08:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:08:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:08:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:08:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:08:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:08:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:08:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:08:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:08:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:08:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:08:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:08:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 17:08:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 17:08:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 17:08:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 17:08:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:08:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 17:08:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:08:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 17:08:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 192 msc 0 sec -2016-05-03 17:08:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:09:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:01 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 17:09:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:09:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:09:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:09:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:09:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 17:09:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:09:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:09:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:09:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:09:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:09:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:09:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:09:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:09:01 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 17:09:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 17:09:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 17:09:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 17:09:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:09:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 17:09:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:09:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 17:09:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-03 17:09:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 17:09:05 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:05 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:05 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:05 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:05 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:06 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:09:06 DEBUG ServiceEngine:306 - get() - start -2016-05-03 17:09:06 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:06 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:06 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 17:09:06 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 17:09:06 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:09:06 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:09:06 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 17:09:06 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:09:06 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 17:09:06 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:06 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:06 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:09:06 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:09:06 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 17:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:06 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:06 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:06 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:09:06 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:06 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:09:06 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:09:06 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:06 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:06 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@71a0d8cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@937df75, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@332f7f0d, socketFactory=javax.net.DefaultSocketFactory@733e48bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:09:06 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:09:06 INFO WorkspaceExplorerServiceImpl:188 - end time - 50 msc 0 sec -2016-05-03 17:09:06 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:09:06 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:09:06 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:09:06 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 17:09:06 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1872723}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1500105, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:06 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:09:06 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:06 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:06 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:06 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1872724}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872724}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 DEBUG command:56 - Command execution completed -2016-05-03 17:09:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872724}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 DEBUG command:56 - Command execution completed -2016-05-03 17:09:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872724}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 DEBUG command:56 - Command execution completed -2016-05-03 17:09:06 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:09:06 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872724}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1556946}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 DEBUG command:56 - Command execution completed -2016-05-03 17:09:06 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872724}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1554605, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:09:06 DEBUG command:56 - Command execution completed -2016-05-03 17:09:06 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1872724}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:06 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:06 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:06 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:09:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:06 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:06 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:06 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:09:06 DEBUG ServiceEngine:306 - get() - start -2016-05-03 17:09:06 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:06 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:06 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 17:09:06 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 17:09:06 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:09:06 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:09:06 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 17:09:06 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:09:06 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:09:06 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:06 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:06 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:09:06 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:09:06 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:09:07 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:09:07 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:07 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:07 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:07 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@71a0d8cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@937df75, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@332f7f0d, socketFactory=javax.net.DefaultSocketFactory@733e48bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:09:07 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:09:07 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:09:07 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1872725}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1262007, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:07 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:09:07 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:07 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:07 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:07 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1556947}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1651765, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 17:09:07 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1872726}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872726}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG command:56 - Command execution completed -2016-05-03 17:09:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872726}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG command:56 - Command execution completed -2016-05-03 17:09:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872726}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG command:56 - Command execution completed -2016-05-03 17:09:07 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:09:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872726}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG command:56 - Command execution completed -2016-05-03 17:09:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872726}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG command:56 - Command execution completed -2016-05-03 17:09:07 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1872726}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:261148}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:261147}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1623098, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1412248, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 17:09:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:09:07 DEBUG query:56 - Query completed -2016-05-03 17:09:07 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 17:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:261147} -2016-05-03 17:09:07 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1872724}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1556946} -2016-05-03 17:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1872724} -2016-05-03 17:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1872723} -2016-05-03 17:09:07 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:09:07 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:09:07 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:09:07 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 17:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:4} -2016-05-03 17:09:07 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2143153}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1060209, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 17:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:09:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:07 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:07 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:07 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:09:07 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:09:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 40 msc 0 sec -2016-05-03 17:09:07 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:07 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:09:07 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:09:08 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:09:08 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 17:09:08 DEBUG query:56 - Query completed -2016-05-03 17:09:08 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 17:09:08 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2143153} -2016-05-03 17:09:08 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:261148} -2016-05-03 17:09:08 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1556947} -2016-05-03 17:09:08 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1872726}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:09:08 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1872726} -2016-05-03 17:09:08 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:09:08 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:09:08 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:09:08 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 17:09:08 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1872725} -2016-05-03 17:09:08 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:08 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:09:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:08 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:09:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:09:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:09:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:08 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:08 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:09:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:08 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:08 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:08 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:09 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 17:09:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:09:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:09:10 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 17:09:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:10 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:10 DEBUG ServiceEngine:193 - get() - start -2016-05-03 17:09:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:10 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:10 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 17:09:10 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:09:10 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:09:10 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:09:10 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 17:09:10 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:09:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:10 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:10 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:09:10 DEBUG Operation:173 - get(String) - start -2016-05-03 17:09:10 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:09:10 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:09:10 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:09:10 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:09:10 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:10 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:10 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@71a0d8cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@937df75, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@332f7f0d, socketFactory=javax.net.DefaultSocketFactory@733e48bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:09:10 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:09:10 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1872727}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:261150}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1429716, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:10 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:09:10 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:10 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:10 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2457750, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:2143154}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=994531, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1556949}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1460898, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:1872728}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 17:09:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:09:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:09:10 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG query:56 - Query completed -2016-05-03 17:09:10 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 17:09:10 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 17:09:10 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 17:09:10 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG update:56 - Update completed -2016-05-03 17:09:10 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:14, serverValue:1872728}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG query:56 - Query completed -2016-05-03 17:09:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:10 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:10 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 17:09:10 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 17:09:10 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 17:09:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:10 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:10 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 17:09:10 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:09:10 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 17:09:10 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:09:10 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 17:09:10 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 17:09:10 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:09:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:10 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:10 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:09:10 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:09:10 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:09:10 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:09:10 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:10 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:10 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@71a0d8cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@937df75, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@332f7f0d, socketFactory=javax.net.DefaultSocketFactory@733e48bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:09:10 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:09:10 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1872729}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1186286, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:10 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:09:10 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:10 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:10 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:261151}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2143155}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1387658, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1032241, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1556950}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1428928, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 17:09:10 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1872730}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:09:10 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:09:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG command:56 - Command execution completed -2016-05-03 17:09:10 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:09:10 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1872730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:10 DEBUG query:56 - Query completed -2016-05-03 17:09:10 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 17:09:10 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2143155} -2016-05-03 17:09:10 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:261151} -2016-05-03 17:09:10 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1872730}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:09:10 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1556950} -2016-05-03 17:09:10 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1872730} -2016-05-03 17:09:10 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:09:10 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1872729} -2016-05-03 17:09:10 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:09:10 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 17:09:10 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 17:09:10 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 17:09:10 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 17:09:10 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 17:09:10 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 17:09:10 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 17:09:20 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:20 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 17:09:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 17:09:20 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 17:09:20 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:09:21 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:21 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:09:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:21 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:09:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:21 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:09:21 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:2143154} -2016-05-03 17:09:21 INFO connection:71 - Closed connection [connectionId{localValue:14, serverValue:1872728}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:09:21 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:1872728} -2016-05-03 17:09:21 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1556949} -2016-05-03 17:09:21 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:261150} -2016-05-03 17:09:21 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1872727} -2016-05-03 17:09:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:09:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:09:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:09:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:09:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:21 DEBUG ServiceEngine:306 - get() - start -2016-05-03 17:09:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:21 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:21 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 17:09:21 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 17:09:21 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:09:21 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:09:21 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 17:09:21 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:09:21 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 17:09:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:21 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:21 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:09:21 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:09:21 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:09:21 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:09:21 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:21 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:21 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:21 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@71a0d8cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@937df75, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@332f7f0d, socketFactory=javax.net.DefaultSocketFactory@733e48bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:09:21 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:09:21 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:09:21 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:09:21 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:261153}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=31673788, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:21 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:09:21 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:21 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=31.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:21 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2143161}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1243012, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=31.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:21 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:09:21 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1556953}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1624971, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=31.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:09:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:09:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 17:09:21 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1872732}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1516878, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:21 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=31.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:09:21 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1872733}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG command:56 - Command execution completed -2016-05-03 17:09:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG command:56 - Command execution completed -2016-05-03 17:09:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG command:56 - Command execution completed -2016-05-03 17:09:21 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:09:21 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG command:56 - Command execution completed -2016-05-03 17:09:21 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:21 DEBUG command:56 - Command execution completed -2016-05-03 17:09:21 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1872733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=25.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:09:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=25.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:09:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=25.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 17:09:22 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:09:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 54 msc 0 sec -2016-05-03 17:09:22 DEBUG query:56 - Query completed -2016-05-03 17:09:22 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 17:09:22 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2143161} -2016-05-03 17:09:22 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:261153} -2016-05-03 17:09:22 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1556953} -2016-05-03 17:09:22 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1872733}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:09:22 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1872733} -2016-05-03 17:09:22 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1872732} -2016-05-03 17:09:22 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:09:22 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:09:22 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:09:22 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 17:09:30 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:30 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:30 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:30 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:09:30 DEBUG ServiceEngine:306 - get() - start -2016-05-03 17:09:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:30 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:30 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 17:09:30 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 17:09:30 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:09:30 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:09:30 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 17:09:30 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:09:30 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:09:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:30 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:30 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:09:30 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:09:30 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:09:30 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:09:30 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:30 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:30 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:30 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@71a0d8cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@937df75, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@332f7f0d, socketFactory=javax.net.DefaultSocketFactory@733e48bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:09:30 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:09:30 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:09:30 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:261155}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1275111, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:30 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:09:30 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:30 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:30 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2143162}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1872738}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=999542, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1210391, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:30 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:30 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1556955}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1069930, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 17:09:30 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1872739}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG command:56 - Command execution completed -2016-05-03 17:09:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG command:56 - Command execution completed -2016-05-03 17:09:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG command:56 - Command execution completed -2016-05-03 17:09:30 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:09:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG command:56 - Command execution completed -2016-05-03 17:09:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG command:56 - Command execution completed -2016-05-03 17:09:30 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1872739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:30 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:09:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:09:30 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:09:30 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:09:30 INFO WorkspaceExplorerServiceImpl:188 - end time - 45 msc 0 sec -2016-05-03 17:09:30 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:09:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:09:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:09:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:09:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 17:09:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 17:09:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 17:09:31 DEBUG query:56 - Query completed -2016-05-03 17:09:31 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 17:09:31 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2143162} -2016-05-03 17:09:31 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:261155} -2016-05-03 17:09:31 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1872739}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:09:31 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1556955} -2016-05-03 17:09:31 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1872739} -2016-05-03 17:09:31 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:09:31 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1872738} -2016-05-03 17:09:31 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:09:31 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:09:31 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 17:09:31 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:31 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:09:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:09:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:31 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:09:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:31 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:09:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:09:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:31 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:31 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:31 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:09:31 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 17:09:32 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:09:32 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:09:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:09:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:32 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:09:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:09:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:09:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:09:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:32 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:09:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:09:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:09:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:32 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:09:32 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:09:32 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:09:32 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 17:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:09:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 17:09:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:09:33 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-03 17:09:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:33 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:09:33 DEBUG ServiceEngine:193 - get() - start -2016-05-03 17:09:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:33 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:33 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 17:09:33 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:09:33 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:09:33 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:09:33 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 17:09:33 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:09:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:33 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:33 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:09:33 DEBUG Operation:173 - get(String) - start -2016-05-03 17:09:33 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:09:33 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:09:33 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:09:33 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:09:33 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:33 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:33 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@71a0d8cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@937df75, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@332f7f0d, socketFactory=javax.net.DefaultSocketFactory@733e48bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:09:33 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:09:33 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1872740}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1152279, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:33 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:09:33 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:33 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:33 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:261156}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1393680, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2143163}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=800870, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1556956}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1258593, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1872741}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 17:09:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:09:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:09:33 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG query:56 - Query completed -2016-05-03 17:09:33 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 17:09:33 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 17:09:33 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 17:09:33 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG update:56 - Update completed -2016-05-03 17:09:33 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1872741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG query:56 - Query completed -2016-05-03 17:09:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:09:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:09:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:09:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:09:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:09:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:09:33 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:09:33 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-03 17:09:33 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 17:09:33 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 17:09:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:33 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:33 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 17:09:33 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:09:33 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 17:09:33 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:09:33 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 17:09:33 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 17:09:33 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:09:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:09:33 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:09:33 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:09:33 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:09:33 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:09:33 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:09:33 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:33 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:33 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@71a0d8cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@937df75, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@332f7f0d, socketFactory=javax.net.DefaultSocketFactory@733e48bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:09:33 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:09:33 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1872742}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1187583, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:33 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:09:33 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:33 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:09:33 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:261157}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=980510, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2143164}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1017331, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1556957}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1268801, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 17:09:33 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1872743}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:09:33 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:09:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG command:56 - Command execution completed -2016-05-03 17:09:33 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:09:33 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1872743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:09:33 DEBUG query:56 - Query completed -2016-05-03 17:09:33 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 17:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2143164} -2016-05-03 17:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:261157} -2016-05-03 17:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1556957} -2016-05-03 17:09:33 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1872743}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1872743} -2016-05-03 17:09:33 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:09:33 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:09:33 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 17:09:33 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 17:09:33 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 17:09:33 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 17:09:33 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 17:09:33 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 17:09:33 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 17:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1872742} -2016-05-03 17:09:36 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2143163} -2016-05-03 17:09:36 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1872741}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:09:36 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1556956} -2016-05-03 17:09:36 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:261156} -2016-05-03 17:09:36 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1872741} -2016-05-03 17:09:36 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1872740} -2016-05-03 17:09:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:09:37 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 17:09:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:09:41 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 17:09:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:09:41 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=h1|h2, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-03 17:09:41 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 17:09:41 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 17:09:41 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 17:09:41 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 17:09:41 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 17:09:41 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:09:41 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 17:09:41 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 17:09:41 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 17:09:41 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 17:09:41 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 17:09:41 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 17:09:41 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 17:09:41 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 17:09:41 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:09:41 DEBUG SClient4WPS:684 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 17:09:41 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 17:09:41 DEBUG WPS2SM:92 - WPS type: -2016-05-03 17:09:41 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 17:09:41 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 17:09:41 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:09:41 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 17:09:41 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 17:09:41 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 17:09:41 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 17:09:41 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 17:09:41 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 17:09:41 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 17:09:41 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 17:09:41 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:09:41 DEBUG SClient4WPS:684 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 17:09:41 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 17:09:41 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_Names, value=h1|h2 -2016-05-03 17:09:41 DEBUG SClient4WPS:753 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 17:09:41 DEBUG SClient4WPS:736 - Configuring Literal: HCAF_Table_Names to: h1|h2 -2016-05-03 17:09:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:09:41 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1|h2 - - - - - - - non_deterministic_output - - - - -2016-05-03 17:09:41 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 17:09:41 DEBUG SClient4WPS:403 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=902b1c48-82d6-400f-91e9-56d1c0dfa429 -2016-05-03 17:09:41 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:09:41 DEBUG SClient4WPS:773 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=902b1c48-82d6-400f-91e9-56d1c0dfa429 -2016-05-03 17:09:41 DEBUG SClient4WPS:698 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=902b1c48-82d6-400f-91e9-56d1c0dfa429 -2016-05-03 17:09:41 DEBUG SClient4WPS:709 - ComputationId: ComputationId [id=902b1c48-82d6-400f-91e9-56d1c0dfa429, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=902b1c48-82d6-400f-91e9-56d1c0dfa429] -2016-05-03 17:09:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:09:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:09:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:09:51 DEBUG SClient4WPS:789 - GetComputationStatus(): ComputationId=ComputationId [id=902b1c48-82d6-400f-91e9-56d1c0dfa429, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=902b1c48-82d6-400f-91e9-56d1c0dfa429] -2016-05-03 17:09:51 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 17:09:51 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 17:09:51 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=902b1c48-82d6-400f-91e9-56d1c0dfa429 -2016-05-03 17:09:51 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 17:09:51 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 17:09:51 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 17:09:51 DEBUG SClient4WPS:805 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - - java.lang.RuntimeException: Error in creating the table for wps_af0817245c9f491599958b7368ebfc8f: Input table is not compliant to the required structure - - - - - -2016-05-03 17:09:51 DEBUG SClient4WPS:850 - WPS FAILURE: - - java.lang.RuntimeException: Error in creating the table for wps_af0817245c9f491599958b7368ebfc8f: Input table is not compliant to the required structure - - OR PAUSED: null -2016-05-03 17:09:51 DEBUG SClient4WPS:888 - ComputationStatus: ComputationStatus [percentage=100.0, status=FAILED, endDate=null, message=null, errResource=null] -2016-05-03 17:10:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:10:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:11:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:11:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:12:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:12:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:13:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:13:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:14:19 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 17:14:19 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 17:14:19 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 17:14:19 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:14:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:14:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:19 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:14:19 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@272b3897 -2016-05-03 17:14:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:19 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:14:19 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:14:19 DEBUG TemplateModel:83 - 2016-05-03 17:14:19, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:14:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:14:19 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 17:14:21 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:14:21 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:14:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:14:21 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:14:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:21 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:14:21 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:14:21 DEBUG TemplateModel:83 - 2016-05-03 17:14:21, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:14:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:14:21 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:14:21 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 115 ms -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 17:14:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 17:14:21 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 17:14:21 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:14:21 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:14:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2fa6805b -2016-05-03 17:14:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@22ebe1a2 -2016-05-03 17:14:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@2ae570e4 -2016-05-03 17:14:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4ae5680 -2016-05-03 17:14:21 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 107 ms -2016-05-03 17:14:21 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 17:14:22 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 17:14:22 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 17:14:22 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 17:14:22 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 17:14:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:14:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 17:14:22 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:14:22 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:14:22 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:14:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:14:22 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 17:14:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 22 ms -2016-05-03 17:14:22 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 17:14:22 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:14:22 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 17:14:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:14:22 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 17:14:22 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 17:14:22 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 17:14:22 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 17:14:22 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 17:14:22 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 17:14:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:14:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:14:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 17:14:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 72 ms -2016-05-03 17:14:22 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 17:14:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:22 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 17:14:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:22 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 17:14:22 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:14:22 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:14:22 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 17:14:22 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:14:22 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:14:22 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 17:14:22 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 17:14:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:14:23 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 17:14:23 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:14:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 17:14:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:14:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 17:14:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:14:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 17:14:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:14:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 17:14:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:25 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:14:25 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:14:25 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:25 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 17:14:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:25 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:25 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 17:14:25 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 17:14:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:14:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:25 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 17:14:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 17:14:25 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:14:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:14:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 17:14:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 17:14:25 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 17:14:25 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 17:14:25 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 17:14:25 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:14:25 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:14:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:14:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:14:25 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 17:14:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 293 msc 0 sec -2016-05-03 17:14:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 269 msc 0 sec -2016-05-03 17:14:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 186 msc 0 sec -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:14:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:14:41 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 17:14:41 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:14:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:14:41 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 17:14:41 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 17:14:41 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 17:14:41 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 17:14:41 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 17:14:41 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 17:14:41 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:14:41 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 17:14:41 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 17:14:41 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 17:14:41 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 17:14:41 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 17:14:41 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:14:41 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 17:14:41 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 17:14:41 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 17:14:41 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 17:14:41 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 17:14:41 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 17:14:41 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 17:14:41 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 17:14:41 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:14:41 DEBUG SClient4WPS:652 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 17:14:41 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 17:14:41 DEBUG WPS2SM:92 - WPS type: -2016-05-03 17:14:41 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 17:14:41 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 17:14:41 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:14:41 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 17:14:41 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 17:14:41 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 17:14:41 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 17:14:41 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 17:14:41 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 17:14:41 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 17:14:41 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 17:14:41 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:14:41 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 17:14:41 DEBUG SClient4WPS:656 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:41 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 17:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:14:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:14:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:14:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:41 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 17:14:41 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 17:14:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 17:14:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 17:14:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:14:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 17:14:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:14:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 17:14:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 190 msc 0 sec -2016-05-03 17:14:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 17:14:47 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:47 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:47 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:14:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:14:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:47 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:47 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:47 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:14:48 DEBUG ServiceEngine:306 - get() - start -2016-05-03 17:14:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:14:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:48 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:48 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:48 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 17:14:48 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 17:14:48 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:14:48 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:14:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:14:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:48 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 17:14:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:48 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:48 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:14:48 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 17:14:48 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:48 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:48 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:14:48 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:14:48 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:14:48 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:48 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:14:48 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:14:48 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:14:48 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:48 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:14:48 INFO WorkspaceExplorerServiceImpl:188 - end time - 58 msc 0 sec -2016-05-03 17:14:48 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:14:48 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 17:14:48 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:48 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:48 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c94b5f77, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5af2ee4d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2fb2fe1, socketFactory=javax.net.DefaultSocketFactory@39045e4e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:14:48 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:14:48 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:14:48 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1872795}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:261212}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1589720, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1375846, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:48 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:14:48 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:48 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:48 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:48 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2143218}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1015658, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:48 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1872796}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872796}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG command:56 - Command execution completed -2016-05-03 17:14:48 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872796}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG command:56 - Command execution completed -2016-05-03 17:14:48 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872796}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG command:56 - Command execution completed -2016-05-03 17:14:48 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:14:48 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872796}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG command:56 - Command execution completed -2016-05-03 17:14:48 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1872796}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1557012}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG command:56 - Command execution completed -2016-05-03 17:14:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2726164, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-03 17:14:48 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1872796}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:49 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:14:49 DEBUG ServiceEngine:306 - get() - start -2016-05-03 17:14:49 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:49 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:49 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 17:14:49 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 17:14:49 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:14:49 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:14:49 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 17:14:49 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:14:49 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:14:49 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:49 DEBUG query:56 - Query completed -2016-05-03 17:14:49 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:49 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:14:49 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:14:49 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:14:49 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 17:14:49 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:14:49 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:49 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:49 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:261212} -2016-05-03 17:14:49 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1557012} -2016-05-03 17:14:49 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2143218} -2016-05-03 17:14:49 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:49 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1872796}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:14:49 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c94b5f77, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5af2ee4d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2fb2fe1, socketFactory=javax.net.DefaultSocketFactory@39045e4e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:14:49 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1872796} -2016-05-03 17:14:49 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:14:49 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:14:49 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:14:49 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1872795} -2016-05-03 17:14:49 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 17:14:49 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:14:49 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1872797}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=4414078, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:49 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:14:49 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:49 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:49 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:49 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2143219}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=986792, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:49 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:261213}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1519018, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:49 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:14:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:49 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1557013}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2636304, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}] -2016-05-03 17:14:49 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1872798}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:49 DEBUG command:56 - Command execution completed -2016-05-03 17:14:49 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG command:56 - Command execution completed -2016-05-03 17:14:49 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG command:56 - Command execution completed -2016-05-03 17:14:49 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:14:49 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG command:56 - Command execution completed -2016-05-03 17:14:49 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1872798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 DEBUG command:56 - Command execution completed -2016-05-03 17:14:49 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1872798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:49 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:14:49 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:188 - end time - 48 msc 0 sec -2016-05-03 17:14:49 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:49 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:14:49 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:14:49 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:14:49 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:49 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:14:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:49 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:14:49 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:14:49 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:14:49 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 17:14:50 DEBUG query:56 - Query completed -2016-05-03 17:14:50 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 17:14:50 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2143219} -2016-05-03 17:14:50 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:261213} -2016-05-03 17:14:50 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1872798}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:14:50 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1872798} -2016-05-03 17:14:50 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1557013} -2016-05-03 17:14:50 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:14:50 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:14:50 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:14:50 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1872797} -2016-05-03 17:14:50 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 17:14:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:14:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:14:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:14:50 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 17:14:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:14:50 DEBUG ServiceEngine:193 - get() - start -2016-05-03 17:14:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:50 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:50 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 17:14:50 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:14:50 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:14:50 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:14:50 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 17:14:50 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:14:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:50 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:50 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:14:50 DEBUG Operation:173 - get(String) - start -2016-05-03 17:14:50 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:14:50 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:14:50 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:14:50 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:14:50 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:50 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:50 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:50 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c94b5f77, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5af2ee4d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2fb2fe1, socketFactory=javax.net.DefaultSocketFactory@39045e4e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:14:50 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:14:50 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:14:50 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:261214}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1185677, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:50 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:14:50 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:50 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:50 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1872799}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2143222}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=952461, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=4767526, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:50 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:50 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1557014}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1182825, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 17:14:50 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1872800}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG command:56 - Command execution completed -2016-05-03 17:14:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG command:56 - Command execution completed -2016-05-03 17:14:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG command:56 - Command execution completed -2016-05-03 17:14:50 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 17:14:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG command:56 - Command execution completed -2016-05-03 17:14:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG command:56 - Command execution completed -2016-05-03 17:14:50 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:14:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG command:56 - Command execution completed -2016-05-03 17:14:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG command:56 - Command execution completed -2016-05-03 17:14:50 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:14:50 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG query:56 - Query completed -2016-05-03 17:14:50 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 17:14:50 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 17:14:50 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 17:14:50 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG update:56 - Update completed -2016-05-03 17:14:50 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1872800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:50 DEBUG query:56 - Query completed -2016-05-03 17:14:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 17:14:50 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 17:14:50 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 17:14:50 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 17:14:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:50 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:50 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 17:14:50 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:14:50 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 17:14:50 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:14:50 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 17:14:50 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 17:14:50 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:14:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:50 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:50 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:14:50 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:14:50 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:14:50 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:14:50 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:50 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:50 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:50 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c94b5f77, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5af2ee4d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2fb2fe1, socketFactory=javax.net.DefaultSocketFactory@39045e4e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:14:50 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:14:50 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:14:51 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1872801}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1357217, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:14:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:51 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:261215}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1171572, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:51 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:2143223}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=809965, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:51 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:1557015}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1197044, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 17:14:51 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1872802}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG command:56 - Command execution completed -2016-05-03 17:14:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG command:56 - Command execution completed -2016-05-03 17:14:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG command:56 - Command execution completed -2016-05-03 17:14:51 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:14:51 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:14:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG command:56 - Command execution completed -2016-05-03 17:14:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1872802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG command:56 - Command execution completed -2016-05-03 17:14:51 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:14:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1872802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG query:56 - Query completed -2016-05-03 17:14:51 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 17:14:51 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:2143223} -2016-05-03 17:14:51 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:261215} -2016-05-03 17:14:51 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:1557015} -2016-05-03 17:14:51 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1872802}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:14:51 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1872802} -2016-05-03 17:14:51 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:14:51 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 17:14:51 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1872801} -2016-05-03 17:14:51 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 17:14:51 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 17:14:51 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 17:14:51 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 17:14:51 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 17:14:51 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 17:14:51 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 17:14:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 17:14:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:52 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 17:14:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 17:14:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:14:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:52 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1872800}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1872800} -2016-05-03 17:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2143222} -2016-05-03 17:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:261214} -2016-05-03 17:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1557014} -2016-05-03 17:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1872799} -2016-05-03 17:14:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:14:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:14:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:14:52 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 17:14:52 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 17:14:52 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 17:14:52 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 17:14:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:14:52 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 17:14:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:14:52 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 17:14:52 INFO WorkspaceExplorerServiceImpl:142 - end time - 185 msc 0 sec -2016-05-03 17:14:52 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 17:14:56 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:56 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:14:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:14:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:56 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:14:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:56 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:14:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:14:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:56 DEBUG ServiceEngine:306 - get() - start -2016-05-03 17:14:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:56 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 17:14:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 17:14:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:14:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:14:56 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 17:14:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:14:56 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 17:14:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:14:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:14:56 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:14:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:14:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c94b5f77, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5af2ee4d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2fb2fe1, socketFactory=javax.net.DefaultSocketFactory@39045e4e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:14:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:14:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:14:56 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:14:56 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 17:14:56 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:261217}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1261901, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:14:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:56 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1872806}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1475081, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:56 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2143224}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=825552, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:56 INFO WorkspaceExplorerServiceImpl:188 - end time - 49 msc 0 sec -2016-05-03 17:14:56 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:14:56 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1557016}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1966943, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 17:14:56 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:14:56 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 17:14:56 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1872808}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872808}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 DEBUG command:56 - Command execution completed -2016-05-03 17:14:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872808}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 DEBUG command:56 - Command execution completed -2016-05-03 17:14:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872808}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:56 DEBUG command:56 - Command execution completed -2016-05-03 17:14:56 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:14:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872808}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:57 DEBUG command:56 - Command execution completed -2016-05-03 17:14:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1872808}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:57 DEBUG command:56 - Command execution completed -2016-05-03 17:14:57 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1872808}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 17:14:57 DEBUG query:56 - Query completed -2016-05-03 17:14:57 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 17:14:57 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2143224} -2016-05-03 17:14:57 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1872808}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:14:57 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:261217} -2016-05-03 17:14:57 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1872808} -2016-05-03 17:14:57 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1557016} -2016-05-03 17:14:57 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1872806} -2016-05-03 17:14:57 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:14:57 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:14:57 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 17:14:57 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 17:14:57 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:57 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:14:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:14:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:57 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:57 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:14:57 DEBUG ServiceEngine:306 - get() - start -2016-05-03 17:14:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:57 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:57 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 17:14:57 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 17:14:57 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:14:57 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:14:57 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 17:14:57 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:14:57 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:14:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:57 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:57 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:14:57 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:14:57 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:14:57 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:14:57 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:57 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:57 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:57 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c94b5f77, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5af2ee4d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2fb2fe1, socketFactory=javax.net.DefaultSocketFactory@39045e4e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:14:57 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:14:57 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:14:58 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:261218}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1290743, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:58 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:14:58 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:58 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:58 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1872809}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2143225}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1136655, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2524102, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:58 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 17:14:58 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1557017}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1361005, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 17:14:58 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1872810}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872810}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG command:56 - Command execution completed -2016-05-03 17:14:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872810}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG command:56 - Command execution completed -2016-05-03 17:14:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872810}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:14:58 DEBUG command:56 - Command execution completed -2016-05-03 17:14:58 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:14:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872810}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG command:56 - Command execution completed -2016-05-03 17:14:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1872810}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG command:56 - Command execution completed -2016-05-03 17:14:58 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1872810}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 17:14:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 41 msc 0 sec -2016-05-03 17:14:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 17:14:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:14:58 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:14:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 17:14:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 17:14:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 17:14:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 17:14:58 DEBUG query:56 - Query completed -2016-05-03 17:14:58 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 17:14:58 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2143225} -2016-05-03 17:14:58 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:261218} -2016-05-03 17:14:58 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1557017} -2016-05-03 17:14:58 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1872810}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:14:58 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1872810} -2016-05-03 17:14:58 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:14:58 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:14:58 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 17:14:58 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1872809} -2016-05-03 17:14:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 17:14:58 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:14:58 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:14:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:58 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:14:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:58 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:14:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:14:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:58 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:14:58 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:14:58 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:14:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 17:14:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:14:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:14:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:14:59 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-03 17:14:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:59 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:14:59 DEBUG ServiceEngine:193 - get() - start -2016-05-03 17:14:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:59 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 17:14:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:14:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:14:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 17:14:59 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 17:14:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:14:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:59 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:14:59 DEBUG Operation:173 - get(String) - start -2016-05-03 17:14:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:14:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:14:59 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:14:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:14:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c94b5f77, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5af2ee4d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2fb2fe1, socketFactory=javax.net.DefaultSocketFactory@39045e4e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:14:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:14:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:14:59 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1872811}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1328955, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:14:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:59 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:261219}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2143226}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1229042, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2503631, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:59 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1557019}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1605079, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:14:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:14:59 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1872812}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG command:56 - Command execution completed -2016-05-03 17:14:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG command:56 - Command execution completed -2016-05-03 17:14:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG command:56 - Command execution completed -2016-05-03 17:14:59 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 17:14:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG command:56 - Command execution completed -2016-05-03 17:14:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG command:56 - Command execution completed -2016-05-03 17:14:59 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:14:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG command:56 - Command execution completed -2016-05-03 17:14:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG command:56 - Command execution completed -2016-05-03 17:14:59 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:14:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG query:56 - Query completed -2016-05-03 17:14:59 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 17:14:59 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 17:14:59 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 17:14:59 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG update:56 - Update completed -2016-05-03 17:14:59 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1872812}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:14:59 DEBUG query:56 - Query completed -2016-05-03 17:14:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:14:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:14:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:14:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:14:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:14:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:14:59 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 17:14:59 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-03 17:14:59 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 17:14:59 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 17:14:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:59 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 17:14:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 17:14:59 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 17:14:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 17:14:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 17:14:59 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 17:14:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 17:14:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 17:14:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 17:14:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 17:14:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 17:14:59 DEBUG MongoIO:77 - open mongo connection -2016-05-03 17:14:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 17:14:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:14:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:14:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c94b5f77, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5af2ee4d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2fb2fe1, socketFactory=javax.net.DefaultSocketFactory@39045e4e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 17:14:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 17:14:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 17:15:00 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:261220}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1000629, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:15:00 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 17:15:00 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:15:00 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 17:15:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:15:00 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1872813}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2143227}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1709989, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:15:00 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:15:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1026350, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:15:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 17:15:00 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1557020}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1143909, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 17:15:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 17:15:00 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1872814}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG command:56 - Command execution completed -2016-05-03 17:15:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG command:56 - Command execution completed -2016-05-03 17:15:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG command:56 - Command execution completed -2016-05-03 17:15:00 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:15:00 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:15:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG command:56 - Command execution completed -2016-05-03 17:15:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1872814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG command:56 - Command execution completed -2016-05-03 17:15:00 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:15:00 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1872814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:00 DEBUG query:56 - Query completed -2016-05-03 17:15:00 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 17:15:00 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2143227} -2016-05-03 17:15:00 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:261220} -2016-05-03 17:15:00 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1872814}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:15:00 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1557020} -2016-05-03 17:15:00 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1872814} -2016-05-03 17:15:00 INFO MongoIO:508 - Mongo has been closed -2016-05-03 17:15:00 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1872813} -2016-05-03 17:15:00 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 17:15:00 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 17:15:00 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 17:15:00 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 17:15:00 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 17:15:00 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 17:15:00 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 17:15:00 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 17:15:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 17:15:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:15:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 17:15:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 17:15:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:15:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:15:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 17:15:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 17:15:14 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2143226} -2016-05-03 17:15:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:15:14 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:15:14 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:261219} -2016-05-03 17:15:14 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1872812}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 17:15:14 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1872812} -2016-05-03 17:15:14 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1557019} -2016-05-03 17:15:14 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1872811} -2016-05-03 17:15:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:15:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:15:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:15:18 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=h1|h2, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-03 17:15:18 DEBUG WPS2SM:324 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 17:15:18 DEBUG WPS2SM:330 - Max Megabytes: 1 -2016-05-03 17:15:18 DEBUG WPS2SM:206 - Default MimeType: text/xml -2016-05-03 17:15:18 DEBUG WPS2SM:207 - Default Schema: null -2016-05-03 17:15:18 DEBUG WPS2SM:208 - Default Encoding: null -2016-05-03 17:15:18 DEBUG WPS2SM:234 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:15:18 DEBUG WPS2SM:235 - Machter find: true -2016-05-03 17:15:18 DEBUG WPS2SM:236 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 17:15:18 DEBUG WPS2SM:238 - Machter start: 31 -2016-05-03 17:15:18 DEBUG WPS2SM:240 - Machter end: 97 -2016-05-03 17:15:18 DEBUG WPS2SM:241 - Machter Group Count: 1 -2016-05-03 17:15:18 DEBUG WPS2SM:244 - Matcher separator: | -2016-05-03 17:15:18 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 17:15:18 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 17:15:18 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:15:18 DEBUG SClient4WPS:684 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 17:15:18 DEBUG WPS2SM:299 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 17:15:18 DEBUG WPS2SM:92 - WPS type: -2016-05-03 17:15:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 17:15:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 17:15:18 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:15:18 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 17:15:18 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 17:15:18 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 17:15:18 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 17:15:18 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 17:15:18 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 17:15:18 DEBUG WPS2SM:338 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 17:15:18 DEBUG WPS2SM:339 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 17:15:18 DEBUG WPS2SM:340 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:15:18 DEBUG SClient4WPS:684 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 17:15:18 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 17:15:18 DEBUG SClient4WPS:692 - UserInputs= key:HCAF_Table_Names, value=h1|h2 -2016-05-03 17:15:18 DEBUG SClient4WPS:753 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 17:15:18 DEBUG SClient4WPS:736 - Configuring Literal: HCAF_Table_Names to: h1|h2 -2016-05-03 17:15:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:15:19 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1|h2 - - - - - - - non_deterministic_output - - - - -2016-05-03 17:15:19 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 17:15:19 DEBUG SClient4WPS:403 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=e827dd9c-bc07-4f48-a668-024dfe8292b3 -2016-05-03 17:15:19 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:15:19 DEBUG SClient4WPS:773 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=e827dd9c-bc07-4f48-a668-024dfe8292b3 -2016-05-03 17:15:19 DEBUG SClient4WPS:698 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=e827dd9c-bc07-4f48-a668-024dfe8292b3 -2016-05-03 17:15:19 DEBUG SClient4WPS:709 - ComputationId: ComputationId [id=e827dd9c-bc07-4f48-a668-024dfe8292b3, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=e827dd9c-bc07-4f48-a668-024dfe8292b3] -2016-05-03 17:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:15:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:15:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:15:29 DEBUG SClient4WPS:789 - GetComputationStatus(): ComputationId=ComputationId [id=e827dd9c-bc07-4f48-a668-024dfe8292b3, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=e827dd9c-bc07-4f48-a668-024dfe8292b3] -2016-05-03 17:15:29 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 17:15:29 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 17:15:29 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=e827dd9c-bc07-4f48-a668-024dfe8292b3 -2016-05-03 17:15:29 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 17:15:29 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 17:15:29 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 17:15:29 DEBUG SClient4WPS:805 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - - org.n52.wps.server.ExceptionReport: Error occured while parsing XML - - - - - -2016-05-03 17:15:29 DEBUG SClient4WPS:850 - WPS FAILURE: - - org.n52.wps.server.ExceptionReport: Error occured while parsing XML - - OR PAUSED: null -2016-05-03 17:15:29 DEBUG SClient4WPS:888 - ComputationStatus: ComputationStatus [percentage=100.0, status=FAILED, endDate=null, message=null, errResource=null] -2016-05-03 17:16:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:16:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:17:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:17:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:17:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:17:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:18:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:18:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:19:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:19:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:20:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:20:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:21:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:22:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:22:34 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:23:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:23:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:24:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:24:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:25:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:25:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:26:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:26:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:27:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:28:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:28:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:28:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:28:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:32:03 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 17:32:03 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 17:32:03 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 17:32:03 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:32:03 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:32:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:32:03 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:32:03 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@1039ea06 -2016-05-03 17:32:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:32:03 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:32:03 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:32:03 DEBUG TemplateModel:83 - 2016-05-03 17:32:03, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:32:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:32:03 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 17:32:05 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:32:05 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:32:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:32:05 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:32:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:32:05 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:32:05 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:32:05 DEBUG TemplateModel:83 - 2016-05-03 17:32:05, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:32:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:32:05 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:32:05 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 157 ms -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 17:32:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 17:32:05 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 17:32:05 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:32:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:32:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@38815cb9 -2016-05-03 17:32:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@1eb0737e -2016-05-03 17:32:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@28481361 -2016-05-03 17:32:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@205a4885 -2016-05-03 17:32:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 96 ms -2016-05-03 17:32:05 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 17:32:05 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 17:32:05 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 17:32:05 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 17:32:05 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 17:32:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:32:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:32:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 17:32:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-03 17:32:05 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 17:32:05 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:32:05 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 17:32:05 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:32:06 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:32:06 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:32:06 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:32:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:32:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:32:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:32:06 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 17:32:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:06 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 17:32:06 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 17:32:06 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 17:32:06 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 17:32:06 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 17:32:06 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 17:32:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 17:32:06 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:32:06 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 17:32:06 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 60 ms -2016-05-03 17:32:06 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 17:32:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:32:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:06 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 17:32:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:06 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 17:32:06 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:32:06 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 17:32:07 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:32:07 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:32:07 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 17:32:07 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:32:07 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:32:07 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 17:32:07 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 17:32:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:07 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:32:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 17:32:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:32:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 17:32:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:32:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 17:32:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:32:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 17:32:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:10 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:32:10 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:32:10 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:32:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:32:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:10 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 17:32:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:32:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:32:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:10 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 17:32:10 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 17:32:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:32:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:32:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:32:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:32:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:10 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 17:32:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 30 ms -2016-05-03 17:32:10 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:32:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:32:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 17:32:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 17:32:10 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 17:32:10 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 17:32:10 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 17:32:10 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:32:10 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:32:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:32:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:32:10 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 17:32:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:32:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:32:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 308 msc 0 sec -2016-05-03 17:32:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 238 msc 0 sec -2016-05-03 17:32:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 161 msc 0 sec -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:32:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:32:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:32:12 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 17:32:12 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:32:12 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:32:12 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 17:32:12 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 17:32:12 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 17:32:12 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 17:32:12 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 17:32:12 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 17:32:12 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:32:12 DEBUG WPS2SM:353 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 17:32:12 DEBUG WPS2SM:359 - Max Megabytes: 1 -2016-05-03 17:32:12 DEBUG WPS2SM:235 - Default MimeType: text/xml -2016-05-03 17:32:12 DEBUG WPS2SM:236 - Default Schema: null -2016-05-03 17:32:12 DEBUG WPS2SM:237 - Default Encoding: null -2016-05-03 17:32:12 DEBUG WPS2SM:263 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:32:12 DEBUG WPS2SM:264 - Machter find: true -2016-05-03 17:32:12 DEBUG WPS2SM:265 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 17:32:12 DEBUG WPS2SM:267 - Machter start: 31 -2016-05-03 17:32:12 DEBUG WPS2SM:269 - Machter end: 97 -2016-05-03 17:32:12 DEBUG WPS2SM:270 - Machter Group Count: 1 -2016-05-03 17:32:12 DEBUG WPS2SM:273 - Matcher separator: | -2016-05-03 17:32:12 DEBUG WPS2SM:367 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 17:32:12 DEBUG WPS2SM:368 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 17:32:12 DEBUG WPS2SM:369 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:32:12 DEBUG SClient4WPS:652 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 17:32:12 DEBUG WPS2SM:328 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 17:32:12 DEBUG WPS2SM:92 - WPS type: -2016-05-03 17:32:12 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 17:32:12 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 17:32:12 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 17:32:12 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 17:32:12 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 17:32:12 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 17:32:12 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 17:32:12 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 17:32:12 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 17:32:12 DEBUG WPS2SM:367 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 17:32:12 DEBUG WPS2SM:368 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 17:32:12 DEBUG WPS2SM:369 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 17:32:12 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 17:32:12 DEBUG SClient4WPS:656 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:32:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:32:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:32:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:32:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 17:32:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:32:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:32:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:32:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:32:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:32:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:32:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:32:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:32:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:32:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:32:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:32:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:32:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:32:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:32:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:32:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:32:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 17:32:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 17:32:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 17:32:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 17:32:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:32:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 17:32:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 17:32:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 17:32:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 17:32:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 17:32:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:32:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:33:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:33:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:34:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:34:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:35:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:36:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:36:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:37:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:37:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:38:10 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 17:38:10 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 17:38:10 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 17:38:10 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:38:10 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:38:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:38:10 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:38:10 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@122cd6a6 -2016-05-03 17:38:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:38:10 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:38:10 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:38:10 DEBUG TemplateModel:83 - 2016-05-03 17:38:10, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:38:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:38:10 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 17:38:13 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:38:13 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:38:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:38:13 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:38:13 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:38:13 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:38:13 DEBUG TemplateModel:83 - 2016-05-03 17:38:13, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:38:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:38:13 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:38:13 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 126 ms -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 17:38:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 17:38:13 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 17:38:13 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:38:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:38:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@44b6a422 -2016-05-03 17:38:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3981bf23 -2016-05-03 17:38:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@402f5965 -2016-05-03 17:38:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@b8774e3 -2016-05-03 17:38:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 99 ms -2016-05-03 17:38:13 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 17:38:13 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 17:38:13 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 17:38:13 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 17:38:13 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 17:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:38:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:38:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 17:38:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-05-03 17:38:13 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 17:38:13 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:38:13 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 17:38:13 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:38:14 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:38:14 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:38:14 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 17:38:14 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 17:38:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:38:14 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 17:38:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:38:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:38:14 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 17:38:14 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 17:38:14 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 17:38:14 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 17:38:14 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 17:38:14 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 17:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 17:38:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:38:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 17:38:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 69 ms -2016-05-03 17:38:14 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 17:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 17:38:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:38:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:38:14 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 17:38:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:38:14 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 17:38:14 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:38:14 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:38:14 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 17:38:14 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:38:14 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:38:14 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 17:38:14 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 17:38:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:38:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:38:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:38:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:38:14 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:38:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 17:38:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:38:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:38:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:38:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:38:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:38:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:38:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:38:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:38:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:38:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 17:38:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:38:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:38:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:38:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:38:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:38:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:38:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:38:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:38:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:38:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 17:38:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:38:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:38:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:38:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:38:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:38:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:38:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:38:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:38:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:38:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 17:38:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:38:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:38:15 ERROR StatWPSClientSession:400 - Error occured while receiving data -2016-05-03 17:38:15 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:38:15 ERROR DataMinerManagerServiceImpl:114 - An error occurred getting the OperatorsClassifications list -org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException: Error occured while receiving data - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:162) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:111) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:38:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:38:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:38:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:38:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:38:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:38:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:38:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:38:16 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 17:38:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:38:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:38:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:38:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:38:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:38:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:38:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:38:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:38:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:38:16 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 17:38:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:38:16 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 17:38:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 17:38:16 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 17:38:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:38:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:38:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:38:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:38:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:38:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:38:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:38:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:38:16 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 17:38:16 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 17:38:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 30 ms -2016-05-03 17:38:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:38:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:38:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:38:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 17:38:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 17:38:16 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 17:38:16 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 17:38:16 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 17:38:16 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:38:16 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:38:16 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 17:38:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:38:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:38:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:38:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 325 msc 0 sec -2016-05-03 17:38:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 184 msc 0 sec -2016-05-03 17:38:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 296 msc 0 sec -2016-05-03 17:39:05 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:39:05 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:39:05 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:39:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:39:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:40:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:40:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:40:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:40:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:41:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:41:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:42:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:42:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:43:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:43:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:44:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:44:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:45:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:45:30 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:46:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:46:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:47:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:47:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:48:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:48:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:49:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:49:10 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:50:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 17:50:05 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 17:51:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:51:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:51:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:51:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:54:20 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 17:54:20 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 17:54:20 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 17:54:20 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:54:20 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:54:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:54:20 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:54:20 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@69057a5a -2016-05-03 17:54:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:54:20 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:54:20 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:54:20 DEBUG TemplateModel:83 - 2016-05-03 17:54:20, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:54:20 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:54:20 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 17:54:22 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 17:54:22 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 17:54:22 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 17:54:22 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 17:54:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:54:22 INFO ASLSession:352 - Logging the entrance -2016-05-03 17:54:22 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 17:54:22 DEBUG TemplateModel:83 - 2016-05-03 17:54:22, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 17:54:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:54:22 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:54:22 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 122 ms -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 17:54:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 17:54:22 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 17:54:23 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:54:23 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:54:23 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:54:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:54:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:54:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 17:54:23 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 17:54:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:54:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:54:23 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 17:54:23 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 17:54:23 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 17:54:23 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 17:54:23 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 17:54:23 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 17:54:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 17:54:23 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:54:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:54:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 17:54:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 17:54:23 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@5917feff -2016-05-03 17:54:23 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@24864764 -2016-05-03 17:54:23 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@6fb4acb8 -2016-05-03 17:54:23 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2d191d10 -2016-05-03 17:54:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 98 ms -2016-05-03 17:54:23 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 17:54:23 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 17:54:23 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 17:54:23 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 17:54:23 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 17:54:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 17:54:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:54:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 17:54:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 20 ms -2016-05-03 17:54:23 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 17:54:23 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:54:23 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 17:54:23 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 17:54:24 ERROR StatWPSClientSession:400 - Error occured while receiving data -2016-05-03 17:54:24 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 17:54:24 ERROR DataMinerManagerServiceImpl:114 - An error occurred getting the OperatorsClassifications list -org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException: Error occured while receiving data - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:162) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:111) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -2016-05-03 17:55:15 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 17:55:15 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 17:55:15 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 17:55:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:55:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:56:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 17:56:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 17:56:21 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 118174 ms -2016-05-03 17:56:21 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 17:56:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:56:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:56:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:56:21 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 17:56:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:56:21 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 17:56:22 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:56:22 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:56:22 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 17:56:22 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 17:56:22 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 17:56:22 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 17:56:22 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 17:56:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:56:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:56:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:56:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:56:23 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 17:56:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 17:56:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:56:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:56:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:56:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:56:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:56:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:56:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:56:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:56:23 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:56:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 17:56:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:56:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:56:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:56:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:56:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:56:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:56:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:56:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:56:23 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:56:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 17:56:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:56:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:56:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:56:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:56:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:56:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:56:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:56:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:56:23 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 17:56:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 17:56:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:56:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:56:24 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:56:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:56:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:56:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:56:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:56:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:56:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:56:24 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 17:56:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:56:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:56:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:56:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:56:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:56:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:56:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:56:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:56:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:56:24 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 17:56:24 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 17:56:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:56:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:56:24 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:56:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:56:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:56:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 17:56:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 17:56:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 17:56:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 17:56:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 17:56:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 17:56:24 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 17:56:24 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 17:56:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 17:56:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 50 ms -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:56:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 17:56:24 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:56:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 17:56:24 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:56:24 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:56:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:56:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 130 ms -2016-05-03 17:56:24 INFO WorkspaceExplorerServiceImpl:188 - end time - 166 msc 0 sec -2016-05-03 17:56:24 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 17:56:24 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 17:56:24 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 17:56:24 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:56:24 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:56:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 33 ms -2016-05-03 17:56:24 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:56:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:56:24 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:56:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 17:56:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:56:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 20 ms -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 17:56:24 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 17:56:24 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:56:24 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:56:24 INFO WorkspaceExplorerServiceImpl:188 - end time - 411 msc 0 sec -2016-05-03 17:56:24 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 17:56:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 17:56:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 17:56:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:56:24 INFO WorkspaceExplorerServiceImpl:188 - end time - 403 msc 0 sec -2016-05-03 17:57:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 17:57:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 17:58:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 17:58:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 17:58:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:58:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 17:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 17:59:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:11:35 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 18:11:35 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 18:11:35 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 18:11:35 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 18:11:35 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 18:11:35 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 18:11:35 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 18:11:35 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6a1e68fa -2016-05-03 18:11:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:11:35 INFO ASLSession:352 - Logging the entrance -2016-05-03 18:11:35 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 18:11:35 DEBUG TemplateModel:83 - 2016-05-03 18:11:35, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 18:11:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:11:35 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 18:11:36 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 18:11:36 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 18:11:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:11:36 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 18:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:11:36 INFO ASLSession:352 - Logging the entrance -2016-05-03 18:11:36 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 18:11:36 DEBUG TemplateModel:83 - 2016-05-03 18:11:36, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 18:11:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:11:36 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 18:11:37 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 135 ms -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 18:11:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 18:11:37 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 18:11:37 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:11:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 18:11:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@52861279 -2016-05-03 18:11:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4c43d61f -2016-05-03 18:11:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@12dd2a63 -2016-05-03 18:11:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2339f182 -2016-05-03 18:11:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 102 ms -2016-05-03 18:11:37 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 18:11:37 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 18:11:37 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:11:37 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 18:11:37 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 18:11:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:11:37 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:11:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 18:11:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-03 18:11:37 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 18:11:37 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:11:37 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 18:11:37 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:11:37 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 18:11:37 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 18:11:37 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 18:11:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:11:37 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 18:11:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:11:37 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 18:11:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:37 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 18:11:37 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 18:11:37 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 18:11:37 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 18:11:37 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 18:11:37 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 18:11:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 18:11:37 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:11:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 18:11:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 19 ms -2016-05-03 18:11:38 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 18:11:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:11:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:38 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 18:11:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:38 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 18:11:38 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 18:11:38 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 18:11:38 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 18:11:38 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 18:11:38 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 18:11:38 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 18:11:38 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 18:11:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:38 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:11:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 18:11:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:11:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 18:11:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:11:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 18:11:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:39 ERROR StatWPSClientSession:400 - Error occured while receiving data -2016-05-03 18:11:39 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:11:39 ERROR DataMinerManagerServiceImpl:114 - An error occurred getting the OperatorsClassifications list -org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException: Error occured while receiving data - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:162) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:111) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -2016-05-03 18:11:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 18:11:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:40 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 18:11:40 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 18:11:40 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:11:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:11:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:40 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 18:11:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:11:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:11:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:40 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 18:11:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:40 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 18:11:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:11:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:11:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:11:40 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 18:11:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:11:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 18:11:40 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 18:11:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 29 ms -2016-05-03 18:11:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 18:11:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:11:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 18:11:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-05-03 18:11:40 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 18:11:40 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 18:11:40 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 18:11:40 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 18:11:40 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 18:11:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:11:40 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 18:11:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 18:11:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 18:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:11:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 310 msc 0 sec -2016-05-03 18:11:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 187 msc 0 sec -2016-05-03 18:11:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 394 msc 0 sec -2016-05-03 18:11:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:11:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:11:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:11:47 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 18:11:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:11:48 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 18:11:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:11:48 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:11:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:11:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:11:49 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 18:11:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:49 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:11:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 18:11:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:11:49 ERROR StatWPSClientSession:400 - Error occured while receiving data -2016-05-03 18:11:49 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:11:49 ERROR DataMinerManagerServiceImpl:114 - An error occurred getting the OperatorsClassifications list -org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException: Error occured while receiving data - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:162) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:111) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -2016-05-03 18:11:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 18:11:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:11:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 18:11:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:11:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 18:11:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:11:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:11:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:50 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 18:11:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:11:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:11:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:50 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 18:11:50 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 18:11:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 97 msc 0 sec -2016-05-03 18:11:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:11:50 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 18:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:11:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:11:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:11:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:11:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:11:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:11:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:11:50 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 18:11:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:11:50 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 18:11:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:11:50 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 18:11:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 143 msc 0 sec -2016-05-03 18:11:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 251 msc 0 sec -2016-05-03 18:12:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:12:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:12:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:12:13 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 18:12:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:12:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:12:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:12:14 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:12:15 ERROR StatWPSClientSession:400 - Error occured while receiving data -2016-05-03 18:12:15 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:12:15 ERROR DataMinerManagerServiceImpl:114 - An error occurred getting the OperatorsClassifications list -org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException: Error occured while receiving data - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:162) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:111) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -2016-05-03 18:12:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:12:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:12:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:12:15 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 18:12:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:12:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:12:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:12:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:12:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:12:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:12:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:12:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:12:17 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:12:19 DEBUG DataMinerWorkAreaManager:60 - DataMiner Folder is set to null -2016-05-03 18:12:41 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 18:12:41 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 18:12:41 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 18:12:41 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 18:12:41 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 18:12:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:12:41 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 18:12:41 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6ec6151d -2016-05-03 18:12:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:12:41 INFO ASLSession:352 - Logging the entrance -2016-05-03 18:12:41 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 18:12:41 DEBUG TemplateModel:83 - 2016-05-03 18:12:41, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 18:12:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:12:41 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 18:12:43 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 18:12:43 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 18:12:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:12:43 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 18:12:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:12:43 INFO ASLSession:352 - Logging the entrance -2016-05-03 18:12:43 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 18:12:43 DEBUG TemplateModel:83 - 2016-05-03 18:12:43, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 18:12:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:12:43 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 18:12:43 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 131 ms -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 18:12:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 18:12:43 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 18:12:43 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:12:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 18:12:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@554b9a7 -2016-05-03 18:12:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@25a0c90 -2016-05-03 18:12:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1bbac272 -2016-05-03 18:12:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@76f7418a -2016-05-03 18:12:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 105 ms -2016-05-03 18:12:44 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 18:12:44 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 18:12:44 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:12:44 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 18:12:44 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 18:12:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:12:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:12:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 18:12:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-03 18:12:44 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 18:12:44 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:12:44 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 18:12:44 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:12:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 18:12:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 18:12:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 18:12:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:12:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:12:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:12:44 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 18:12:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:12:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:12:44 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 18:12:44 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 18:12:44 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 18:12:44 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 18:12:44 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 18:12:44 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 18:12:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 18:12:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:12:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 18:12:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-03 18:12:44 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 18:12:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:12:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:12:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:12:44 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 18:12:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:12:44 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 18:12:44 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 18:12:45 ERROR StatWPSClientSession:400 - Error occured while receiving data -2016-05-03 18:12:45 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:12:45 ERROR DataMinerManagerServiceImpl:114 - An error occurred getting the OperatorsClassifications list -org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException: Error occured while receiving data - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:162) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:111) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -2016-05-03 18:12:45 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 18:12:45 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 18:12:45 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 18:12:45 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 18:12:45 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:12:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:12:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:12:45 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:12:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 18:12:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:12:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:12:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:12:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:12:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:12:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:12:45 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:12:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 18:12:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:12:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:12:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:12:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:12:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:12:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:12:45 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:12:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 18:12:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:12:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:12:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:12:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:12:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:12:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:12:45 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:12:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 18:12:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:12:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:12:46 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 18:12:46 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 18:12:46 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:12:46 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:12:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:12:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:12:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:12:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:12:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:12:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:12:46 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 18:12:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:12:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:12:46 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:12:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:12:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:12:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:12:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:12:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:12:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:12:46 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 18:12:46 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 18:12:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:12:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:12:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:12:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:12:46 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:12:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:12:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:12:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:12:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:12:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:12:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:12:46 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 18:12:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 18:12:46 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 18:12:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:12:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:12:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 18:12:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:12:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 21 ms -2016-05-03 18:12:46 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 18:12:46 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 18:12:46 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 18:12:46 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 18:12:46 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 18:12:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:12:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 18:12:46 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 18:12:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-03 18:12:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:12:46 INFO WorkspaceExplorerServiceImpl:188 - end time - 339 msc 0 sec -2016-05-03 18:12:46 INFO WorkspaceExplorerServiceImpl:188 - end time - 188 msc 0 sec -2016-05-03 18:12:46 INFO WorkspaceExplorerServiceImpl:188 - end time - 305 msc 0 sec -2016-05-03 18:13:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-03 18:13:36 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-03 18:14:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:14:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:15:23 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 18:15:23 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 18:15:23 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 18:15:23 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 18:15:23 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 18:15:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:15:23 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 18:15:23 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@44e7f8ce -2016-05-03 18:15:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:15:23 INFO ASLSession:352 - Logging the entrance -2016-05-03 18:15:23 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 18:15:23 DEBUG TemplateModel:83 - 2016-05-03 18:15:23, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 18:15:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:15:23 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 18:15:24 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 18:15:24 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 18:15:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:15:24 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 18:15:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:15:24 INFO ASLSession:352 - Logging the entrance -2016-05-03 18:15:24 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 18:15:24 DEBUG TemplateModel:83 - 2016-05-03 18:15:24, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 18:15:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:15:24 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 18:15:25 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 127 ms -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 18:15:25 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 18:15:25 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 18:15:25 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:15:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 18:15:25 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@713ea44f -2016-05-03 18:15:25 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6d453256 -2016-05-03 18:15:25 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5f6c54d3 -2016-05-03 18:15:25 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4c69f621 -2016-05-03 18:15:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-05-03 18:15:25 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 18:15:25 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 18:15:25 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:15:25 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 18:15:25 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 18:15:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:15:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:15:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 18:15:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 21 ms -2016-05-03 18:15:25 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 18:15:25 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:15:25 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 18:15:25 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:15:25 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 18:15:25 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 18:15:25 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 18:15:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:15:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:15:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:15:25 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 18:15:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:15:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:15:25 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 18:15:25 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 18:15:25 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 18:15:25 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 18:15:25 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 18:15:25 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 18:15:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 18:15:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:15:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 18:15:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 129 ms -2016-05-03 18:15:26 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 18:15:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:15:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:15:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:15:26 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 18:15:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:15:26 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 18:15:26 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 18:15:26 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 18:15:26 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 18:15:26 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 18:15:26 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 18:15:26 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 18:15:26 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 18:15:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:15:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:15:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:15:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:15:26 ERROR StatWPSClientSession:400 - Error occured while receiving data -2016-05-03 18:15:26 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:15:26 ERROR DataMinerManagerServiceImpl:114 - An error occurred getting the OperatorsClassifications list -org.gcube.portlets.user.dataminermanager.shared.exception.ServiceException: Error occured while receiving data - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:162) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:111) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -2016-05-03 18:15:26 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:15:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 18:15:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:15:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:15:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:15:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:15:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:15:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:15:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:15:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:15:26 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:15:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 18:15:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:15:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:15:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:15:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:15:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:15:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:15:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:15:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:15:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:15:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 18:15:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:15:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:15:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:15:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:15:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:15:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:15:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:15:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:15:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:15:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 18:15:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:15:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:15:28 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 18:15:28 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 18:15:28 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 18:15:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:15:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:15:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:15:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:15:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:15:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:15:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:15:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:15:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:15:28 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 18:15:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:15:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:15:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:15:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:15:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:15:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:15:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:15:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:15:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:15:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:15:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:15:28 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 18:15:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:15:28 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 18:15:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:15:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:15:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:15:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:15:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 18:15:29 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 18:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:15:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:15:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:15:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:15:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:15:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:15:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:15:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:15:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 18:15:29 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 18:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:15:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:15:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 18:15:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:15:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:15:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 21 ms -2016-05-03 18:15:29 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 18:15:29 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 18:15:29 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 18:15:29 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 18:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:15:29 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 18:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:15:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:15:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 18:15:29 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 18:15:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-03 18:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:15:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:15:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 337 msc 0 sec -2016-05-03 18:15:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 156 msc 0 sec -2016-05-03 18:15:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 298 msc 0 sec -2016-05-03 18:16:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:16:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:17:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:17:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:18:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:18:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:19:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:19:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:19:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:19:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:20:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:20:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:22:45 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 18:22:45 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 18:22:45 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 18:22:45 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 18:22:45 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 18:22:45 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:22:45 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 18:22:45 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@fad991f -2016-05-03 18:22:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:22:45 INFO ASLSession:352 - Logging the entrance -2016-05-03 18:22:45 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 18:22:45 DEBUG TemplateModel:83 - 2016-05-03 18:22:45, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 18:22:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:22:45 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 18:22:47 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 18:22:47 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 18:22:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:22:47 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 18:22:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:22:47 INFO ASLSession:352 - Logging the entrance -2016-05-03 18:22:47 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 18:22:47 DEBUG TemplateModel:83 - 2016-05-03 18:22:47, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 18:22:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:22:47 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 18:22:47 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 130 ms -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 18:22:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 18:22:47 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 18:22:47 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:22:47 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 18:22:47 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@1e4da4c4 -2016-05-03 18:22:47 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@19d0a2a2 -2016-05-03 18:22:47 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1c347e1b -2016-05-03 18:22:47 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4181038 -2016-05-03 18:22:47 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 105 ms -2016-05-03 18:22:47 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 18:22:47 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 18:22:47 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:22:47 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 18:22:47 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 18:22:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:22:47 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:22:47 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 18:22:47 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-03 18:22:47 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 18:22:47 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:22:47 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 18:22:47 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:22:47 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 18:22:47 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 18:22:47 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 18:22:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:22:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:22:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:22:47 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 18:22:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:48 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 18:22:48 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 18:22:48 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 18:22:48 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 18:22:48 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 18:22:48 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 18:22:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 18:22:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:22:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 18:22:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 81 ms -2016-05-03 18:22:48 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 18:22:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:22:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:48 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 18:22:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:48 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 18:22:48 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 18:22:48 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 18:22:48 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 18:22:48 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 18:22:48 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 18:22:48 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 18:22:48 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 18:22:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:48 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:22:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 18:22:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:22:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 18:22:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:22:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 18:22:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 18:22:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 18:22:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:22:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:22:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:22:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:49 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 18:22:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:22:50 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:22:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:50 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 18:22:50 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:22:50 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 18:22:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:50 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:22:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:22:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:50 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 18:22:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:22:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 18:22:50 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 18:22:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-03 18:22:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:22:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:22:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 18:22:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-05-03 18:22:50 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 18:22:50 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 18:22:50 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 18:22:50 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:22:50 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:22:50 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 18:22:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 18:22:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 18:22:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 18:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:22:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 391 msc 0 sec -2016-05-03 18:22:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 172 msc 0 sec -2016-05-03 18:22:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 321 msc 0 sec -2016-05-03 18:22:54 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 18:22:54 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 18:22:54 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 18:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:22:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:22:54 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:22:54 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-03 18:22:54 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:22:54 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:22:55 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 18:22:55 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 18:22:55 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 18:22:55 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-03 18:22:55 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-03 18:22:55 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-03 18:22:55 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-03 18:22:55 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 18:22:55 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-03 18:22:55 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 18:22:55 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:22:55 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-03 18:22:55 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-03 18:22:55 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-03 18:22:55 DEBUG WPS2SM:208 - Default Schema: null -2016-05-03 18:22:55 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-03 18:22:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 18:22:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-03 18:22:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:22:55 DEBUG SClient4WPS:652 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 18:22:55 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-03 18:22:55 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:22:55 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:22:55 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 18:22:55 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 18:22:55 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 18:22:55 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-03 18:22:55 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-03 18:22:55 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 18:22:55 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 18:22:55 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-03 18:22:55 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 18:22:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-03 18:22:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-03 18:22:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:22:55 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 18:22:55 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-03 18:22:55 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:22:55 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:22:55 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-03 18:22:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-03 18:22:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-03 18:22:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:22:55 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-03 18:22:55 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-03 18:22:55 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:22:55 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:22:55 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 18:22:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-03 18:22:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-03 18:22:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:22:55 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 18:22:55 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-03 18:22:55 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:22:55 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:22:55 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-03 18:22:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-03 18:22:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-03 18:22:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:22:55 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-03 18:22:55 DEBUG SClient4WPS:656 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:22:55 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:22:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:22:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:22:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:55 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 18:22:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:22:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:22:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:22:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:22:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:22:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:22:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:22:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:22:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:22:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:22:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:22:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:22:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:22:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:22:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:22:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:22:55 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 18:22:56 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 18:22:56 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 18:22:56 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 18:22:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 18:22:56 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 18:22:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 18:22:56 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 18:22:56 INFO WorkspaceExplorerServiceImpl:142 - end time - 322 msc 0 sec -2016-05-03 18:22:56 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 18:23:04 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:23:04 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:23:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:04 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:23:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:04 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:23:04 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:23:04 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 18:23:04 DEBUG ServiceEngine:306 - get() - start -2016-05-03 18:23:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:23:04 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:23:04 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 18:23:04 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 18:23:04 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 18:23:04 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 18:23:04 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 18:23:04 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 18:23:04 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 18:23:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:23:04 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:23:04 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 18:23:04 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 18:23:04 DEBUG MongoIO:77 - open mongo connection -2016-05-03 18:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:23:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:23:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:04 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:23:04 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:23:04 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 18:23:04 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:04 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 18:23:04 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 18:23:04 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:04 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:04 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2b1dec72, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6912ab4a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@48abbd2a, socketFactory=javax.net.DefaultSocketFactory@31035ac, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 18:23:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 66 msc 0 sec -2016-05-03 18:23:04 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 18:23:04 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:23:04 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 18:23:04 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 18:23:04 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 18:23:04 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1874460}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:262601}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1221831, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1855851, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:04 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 18:23:04 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:04 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:04 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:04 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1874461}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2144390}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=954831, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1874461}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG command:56 - Command execution completed -2016-05-03 18:23:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1874461}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG command:56 - Command execution completed -2016-05-03 18:23:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1874461}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG command:56 - Command execution completed -2016-05-03 18:23:04 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 18:23:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1874461}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG command:56 - Command execution completed -2016-05-03 18:23:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1874461}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG command:56 - Command execution completed -2016-05-03 18:23:04 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1558190}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1676033, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1874461}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 18:23:05 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:23:05 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:23:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:23:05 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:23:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:23:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:05 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:23:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:23:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:23:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:23:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:05 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:23:05 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:23:05 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-03 18:23:05 DEBUG ServiceEngine:306 - get() - start -2016-05-03 18:23:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:23:05 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:23:05 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-03 18:23:05 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 18:23:05 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 18:23:05 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 18:23:05 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 18:23:05 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 18:23:05 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-03 18:23:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:23:05 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:23:05 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 18:23:05 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 18:23:05 DEBUG MongoIO:77 - open mongo connection -2016-05-03 18:23:05 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 18:23:05 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:05 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:05 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:05 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2b1dec72, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6912ab4a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@48abbd2a, socketFactory=javax.net.DefaultSocketFactory@31035ac, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 18:23:05 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 18:23:05 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 18:23:05 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:262602}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1615036, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:05 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 18:23:05 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:05 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:05 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1874462}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2144392}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1050270, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1757118, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:05 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:23:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:23:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:23:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:23:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:23:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:23:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:05 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:23:05 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:23:05 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1558191}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2540499, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-03 18:23:05 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1874463}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1874463}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG command:56 - Command execution completed -2016-05-03 18:23:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1874463}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-03 18:23:05 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-03 18:23:05 DEBUG command:56 - Command execution completed -2016-05-03 18:23:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1874463}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG command:56 - Command execution completed -2016-05-03 18:23:05 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-03 18:23:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1874463}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG command:56 - Command execution completed -2016-05-03 18:23:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1874463}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 DEBUG command:56 - Command execution completed -2016-05-03 18:23:05 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1874463}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:05 INFO WorkspaceExplorerServiceImpl:188 - end time - 58 msc 0 sec -2016-05-03 18:23:05 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:23:05 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 18:23:05 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:23:05 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 18:23:05 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 18:23:05 DEBUG query:56 - Query completed -2016-05-03 18:23:05 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 18:23:05 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2144390} -2016-05-03 18:23:05 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:262601} -2016-05-03 18:23:05 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1558190} -2016-05-03 18:23:05 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1874461}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 18:23:05 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1874461} -2016-05-03 18:23:05 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1874460} -2016-05-03 18:23:05 INFO MongoIO:508 - Mongo has been closed -2016-05-03 18:23:05 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 18:23:05 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 18:23:05 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 18:23:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:23:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-03 18:23:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:23:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-03 18:23:06 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:23:06 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:23:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:23:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:23:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:23:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:06 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:23:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:23:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:23:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:23:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:06 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:23:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:23:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:23:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:23:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:06 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:23:06 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:23:06 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:23:06 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-03 18:23:06 DEBUG query:56 - Query completed -2016-05-03 18:23:06 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-03 18:23:06 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2144392} -2016-05-03 18:23:06 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:262602} -2016-05-03 18:23:06 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1874463}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 18:23:06 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1558191} -2016-05-03 18:23:06 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1874463} -2016-05-03 18:23:06 INFO MongoIO:508 - Mongo has been closed -2016-05-03 18:23:06 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1874462} -2016-05-03 18:23:06 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-03 18:23:06 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-03 18:23:06 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-03 18:23:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:23:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:23:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:23:07 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-03 18:23:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:07 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:23:07 DEBUG ServiceEngine:193 - get() - start -2016-05-03 18:23:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:23:07 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:23:07 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-03 18:23:07 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-03 18:23:07 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 18:23:07 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 18:23:07 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 18:23:07 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 18:23:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:23:07 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:23:07 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:23:07 DEBUG Operation:173 - get(String) - start -2016-05-03 18:23:07 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 18:23:07 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 18:23:07 DEBUG MongoIO:77 - open mongo connection -2016-05-03 18:23:07 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 18:23:07 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:07 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:07 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:07 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2b1dec72, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6912ab4a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@48abbd2a, socketFactory=javax.net.DefaultSocketFactory@31035ac, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 18:23:07 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 18:23:07 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 18:23:07 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:262603}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1874464}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1485450, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:07 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 18:23:07 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:07 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1678559, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:07 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:07 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2144393}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1247645, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:07 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1558192}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3016999, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-03 18:23:07 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1874465}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG command:56 - Command execution completed -2016-05-03 18:23:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG command:56 - Command execution completed -2016-05-03 18:23:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG command:56 - Command execution completed -2016-05-03 18:23:07 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 18:23:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG command:56 - Command execution completed -2016-05-03 18:23:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG command:56 - Command execution completed -2016-05-03 18:23:07 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:23:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG command:56 - Command execution completed -2016-05-03 18:23:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG command:56 - Command execution completed -2016-05-03 18:23:07 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:23:07 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:07 DEBUG query:56 - Query completed -2016-05-03 18:23:07 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-03 18:23:07 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 18:23:07 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 18:23:07 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG update:56 - Update completed -2016-05-03 18:23:09 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1874465}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG query:56 - Query completed -2016-05-03 18:23:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:23:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:23:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:23:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:23:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:23:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:23:09 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:23:09 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-03 18:23:09 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 18:23:09 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 18:23:09 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:23:09 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:23:09 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-03 18:23:09 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-03 18:23:09 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 18:23:09 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 18:23:09 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 18:23:09 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 18:23:09 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 18:23:09 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:23:09 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:23:09 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 18:23:09 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 18:23:09 DEBUG MongoIO:77 - open mongo connection -2016-05-03 18:23:09 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 18:23:09 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:09 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:09 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:09 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2b1dec72, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6912ab4a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@48abbd2a, socketFactory=javax.net.DefaultSocketFactory@31035ac, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 18:23:09 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 18:23:09 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 18:23:09 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:262604}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1092881, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:09 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 18:23:09 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:09 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:23:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:09 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2144394}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1257551, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:09 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1874468}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1442871, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:09 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:23:09 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1558193}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1302574, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:23:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 18:23:09 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1874469}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1874469}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG command:56 - Command execution completed -2016-05-03 18:23:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1874469}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG command:56 - Command execution completed -2016-05-03 18:23:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1874469}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG command:56 - Command execution completed -2016-05-03 18:23:09 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:23:09 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:23:09 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1874469}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG command:56 - Command execution completed -2016-05-03 18:23:09 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1874469}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG command:56 - Command execution completed -2016-05-03 18:23:09 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:23:09 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1874469}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:23:09 DEBUG query:56 - Query completed -2016-05-03 18:23:09 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2144394} -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:262604} -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1558193} -2016-05-03 18:23:09 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1874469}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1874469} -2016-05-03 18:23:09 INFO MongoIO:508 - Mongo has been closed -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1874468} -2016-05-03 18:23:09 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:23:09 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-03 18:23:09 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-03 18:23:09 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-03 18:23:09 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 18:23:09 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-03 18:23:09 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:23:09 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2144393} -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:262603} -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1558192} -2016-05-03 18:23:09 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1874465}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1874465} -2016-05-03 18:23:09 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1874464} -2016-05-03 18:23:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:23:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:23:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:23:27 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-03 18:23:27 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-03 18:23:27 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-03 18:23:27 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-03 18:23:27 DEBUG WPS2SM:208 - Default Schema: null -2016-05-03 18:23:27 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-03 18:23:27 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 18:23:27 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-03 18:23:27 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:23:27 DEBUG SClient4WPS:684 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 18:23:27 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-03 18:23:27 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:23:27 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:23:27 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 18:23:27 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 18:23:27 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 18:23:27 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-03 18:23:27 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-03 18:23:27 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 18:23:27 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 18:23:27 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-03 18:23:27 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 18:23:27 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-03 18:23:27 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-03 18:23:27 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:23:27 DEBUG SClient4WPS:684 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 18:23:27 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-03 18:23:27 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:23:27 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:23:27 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-03 18:23:27 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-03 18:23:27 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-03 18:23:27 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:23:27 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-03 18:23:27 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-03 18:23:27 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:23:27 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:23:27 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 18:23:27 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-03 18:23:27 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-03 18:23:27 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:23:27 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 18:23:27 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-03 18:23:27 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:23:27 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:23:27 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-03 18:23:27 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-03 18:23:27 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-03 18:23:27 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:23:27 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-03 18:23:27 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:23:27 DEBUG SClient4WPS:692 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-03 18:23:27 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsClusterLabel, value=test -2016-05-03 18:23:27 DEBUG SClient4WPS:692 - UserInputs= key:epsilon, value=10 -2016-05-03 18:23:27 DEBUG SClient4WPS:692 - UserInputs= key:min_points, value=1 -2016-05-03 18:23:27 DEBUG SClient4WPS:753 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:23:27 DEBUG SClient4WPS:736 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-03 18:23:27 DEBUG SClient4WPS:736 - Configuring Literal: OccurrencePointsClusterLabel to: test -2016-05-03 18:23:27 DEBUG SClient4WPS:736 - Configuring Literal: epsilon to: 10 -2016-05-03 18:23:27 DEBUG SClient4WPS:736 - Configuring Literal: min_points to: 1 -2016-05-03 18:23:27 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:23:28 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-03 18:23:28 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 18:23:28 DEBUG SClient4WPS:403 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9152db41-996a-4733-8840-73a84df9177d -2016-05-03 18:23:28 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:23:28 DEBUG SClient4WPS:773 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9152db41-996a-4733-8840-73a84df9177d -2016-05-03 18:23:28 DEBUG SClient4WPS:698 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9152db41-996a-4733-8840-73a84df9177d -2016-05-03 18:23:28 DEBUG SClient4WPS:709 - ComputationId: ComputationId [id=9152db41-996a-4733-8840-73a84df9177d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9152db41-996a-4733-8840-73a84df9177d] -2016-05-03 18:23:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:23:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:23:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:23:38 DEBUG SClient4WPS:789 - GetComputationStatus(): ComputationId=ComputationId [id=9152db41-996a-4733-8840-73a84df9177d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9152db41-996a-4733-8840-73a84df9177d] -2016-05-03 18:23:38 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 18:23:38 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 18:23:38 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9152db41-996a-4733-8840-73a84df9177d -2016-05-03 18:23:38 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:23:38 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 18:23:38 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 18:23:38 DEBUG SClient4WPS:805 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - - - -2016-05-03 18:23:38 DEBUG SClient4WPS:877 - WPS STATUS:0.0 -2016-05-03 18:23:38 DEBUG SClient4WPS:888 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-03 18:23:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:23:40 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:23:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:23:48 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:23:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:23:48 DEBUG SClient4WPS:789 - GetComputationStatus(): ComputationId=ComputationId [id=9152db41-996a-4733-8840-73a84df9177d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9152db41-996a-4733-8840-73a84df9177d] -2016-05-03 18:23:48 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 18:23:48 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 18:23:48 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9152db41-996a-4733-8840-73a84df9177d -2016-05-03 18:23:48 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:23:48 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 18:23:48 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 18:23:48 DEBUG SClient4WPS:805 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - - - - java.lang.RuntimeException: org.n52.wps.server.ExceptionReport: Could not create Inline Complex Data from the process result - - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - -2016-05-03 18:23:48 DEBUG SClient4WPS:850 - WPS FAILURE: - - java.lang.RuntimeException: org.n52.wps.server.ExceptionReport: Could not create Inline Complex Data from the process result - - OR PAUSED: null -2016-05-03 18:23:48 DEBUG SClient4WPS:888 - ComputationStatus: ComputationStatus [percentage=100.0, status=FAILED, endDate=null, message=null, errResource=null] -2016-05-03 18:24:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:24:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:25:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:25:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:26:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:26:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:27:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:27:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:27:06 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-03 18:27:06 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-03 18:27:06 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-03 18:27:06 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-03 18:27:06 DEBUG WPS2SM:208 - Default Schema: null -2016-05-03 18:27:06 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-03 18:27:06 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 18:27:06 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-03 18:27:06 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:06 DEBUG SClient4WPS:652 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 18:27:06 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-03 18:27:06 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:27:06 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:27:06 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 18:27:06 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 18:27:06 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 18:27:06 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-03 18:27:06 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-03 18:27:06 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 18:27:06 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 18:27:06 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-03 18:27:06 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 18:27:06 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-03 18:27:06 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-03 18:27:06 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:06 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 18:27:06 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-03 18:27:06 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:27:06 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:27:06 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-03 18:27:06 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-03 18:27:06 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-03 18:27:06 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:06 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-03 18:27:06 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-03 18:27:06 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:27:06 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:27:06 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 18:27:06 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-03 18:27:06 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-03 18:27:06 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:06 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 18:27:06 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-03 18:27:06 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:27:06 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:27:06 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-03 18:27:06 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-03 18:27:06 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-03 18:27:06 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:06 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-03 18:27:06 DEBUG SClient4WPS:656 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:27:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:27:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:27:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:27:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:27:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:06 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:27:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:27:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:27:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 18:27:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:27:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:27:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:27:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:27:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:27:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:06 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:27:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 18:27:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:27:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:27:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:27:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 18:27:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 18:27:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 18:27:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 18:27:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 18:27:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 18:27:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 18:27:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 18:27:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 18:27:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 240 msc 0 sec -2016-05-03 18:27:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 18:27:14 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:27:14 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:27:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:14 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:27:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:14 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:27:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:27:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:27:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:27:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:27:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:27:14 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 18:27:14 DEBUG ServiceEngine:306 - get() - start -2016-05-03 18:27:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:27:14 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:27:14 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 18:27:14 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 18:27:14 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 18:27:14 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 18:27:14 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 18:27:14 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 18:27:14 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 18:27:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:27:14 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:27:14 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 18:27:14 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 18:27:14 DEBUG MongoIO:77 - open mongo connection -2016-05-03 18:27:14 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 18:27:14 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:14 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:14 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:14 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2b1dec72, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6912ab4a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@48abbd2a, socketFactory=javax.net.DefaultSocketFactory@31035ac, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 18:27:14 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 18:27:14 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 18:27:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:27:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:27:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:27:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:27:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:27:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:27:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:14 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1874768}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=3437926, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:14 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 18:27:14 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:14 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:27:14 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:27:14 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 18:27:14 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1874769}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1874769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 18:27:14 DEBUG command:56 - Command execution completed -2016-05-03 18:27:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1874769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG command:56 - Command execution completed -2016-05-03 18:27:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1874769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG command:56 - Command execution completed -2016-05-03 18:27:14 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 18:27:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1874769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG command:56 - Command execution completed -2016-05-03 18:27:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1874769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG command:56 - Command execution completed -2016-05-03 18:27:14 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1874769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:262826}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1338391, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:14 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2144565}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=850461, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:14 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:27:14 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1558365}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:27:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 62 msc 0 sec -2016-05-03 18:27:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1846303, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 18:27:15 DEBUG query:56 - Query completed -2016-05-03 18:27:15 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 18:27:15 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2144565} -2016-05-03 18:27:15 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:262826} -2016-05-03 18:27:15 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1558365} -2016-05-03 18:27:15 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1874769}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 18:27:15 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1874769} -2016-05-03 18:27:15 INFO MongoIO:508 - Mongo has been closed -2016-05-03 18:27:15 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 18:27:15 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 18:27:15 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 18:27:15 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1874768} -2016-05-03 18:27:15 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 18:27:15 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 18:27:16 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:27:16 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:27:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:27:16 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 18:27:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 18:27:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:16 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:27:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:27:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:27:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:27:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:16 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:27:16 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:27:16 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-03 18:27:16 DEBUG ServiceEngine:306 - get() - start -2016-05-03 18:27:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:27:16 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:27:16 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-03 18:27:16 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 18:27:16 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 18:27:16 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 18:27:16 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 18:27:16 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 18:27:16 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-03 18:27:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:27:16 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:27:16 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 18:27:16 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 18:27:16 DEBUG MongoIO:77 - open mongo connection -2016-05-03 18:27:16 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 18:27:16 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:16 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:16 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:16 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2b1dec72, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6912ab4a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@48abbd2a, socketFactory=javax.net.DefaultSocketFactory@31035ac, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 18:27:16 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 18:27:16 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 18:27:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:27:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:27:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:27:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:27:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:16 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:27:16 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-03 18:27:16 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:262827}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1769282, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:16 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 18:27:16 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:16 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:16 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1874770}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2144566}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=775262, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=6757522, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:16 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:16 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1558367}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1520954, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 18:27:16 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-03 18:27:16 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-03 18:27:16 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1874771}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1874771}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG command:56 - Command execution completed -2016-05-03 18:27:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1874771}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG command:56 - Command execution completed -2016-05-03 18:27:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1874771}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG command:56 - Command execution completed -2016-05-03 18:27:16 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-03 18:27:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1874771}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG command:56 - Command execution completed -2016-05-03 18:27:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1874771}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG command:56 - Command execution completed -2016-05-03 18:27:16 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1874771}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 48 msc 0 sec -2016-05-03 18:27:16 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 18:27:16 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 18:27:16 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 18:27:16 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 18:27:16 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 18:27:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 18:27:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 18:27:17 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:27:17 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:27:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:27:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:27:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:27:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:17 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:27:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:27:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:27:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:27:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:17 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:27:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:27:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:17 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:27:17 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:27:17 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:27:17 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-03 18:27:17 DEBUG query:56 - Query completed -2016-05-03 18:27:17 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-03 18:27:17 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2144566} -2016-05-03 18:27:17 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:262827} -2016-05-03 18:27:17 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1558367} -2016-05-03 18:27:17 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1874771}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 18:27:17 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1874771} -2016-05-03 18:27:17 INFO MongoIO:508 - Mongo has been closed -2016-05-03 18:27:17 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-03 18:27:17 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1874770} -2016-05-03 18:27:17 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-03 18:27:17 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-03 18:27:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:27:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:27:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:27:18 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-03 18:27:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:18 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:27:18 DEBUG ServiceEngine:193 - get() - start -2016-05-03 18:27:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:27:18 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:27:18 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-03 18:27:18 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-03 18:27:18 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 18:27:18 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 18:27:18 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 18:27:18 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 18:27:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:27:18 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:27:18 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:27:18 DEBUG Operation:173 - get(String) - start -2016-05-03 18:27:18 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 18:27:18 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 18:27:18 DEBUG MongoIO:77 - open mongo connection -2016-05-03 18:27:18 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 18:27:18 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:18 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:18 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2b1dec72, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6912ab4a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@48abbd2a, socketFactory=javax.net.DefaultSocketFactory@31035ac, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 18:27:18 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 18:27:18 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:262831}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1174072, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:18 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 18:27:18 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:18 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2144570}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=972102, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1558372}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1464766, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1874777}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1238976, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:18 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1874780}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 18:27:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:27:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:27:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG query:56 - Query completed -2016-05-03 18:27:18 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-03 18:27:18 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 18:27:18 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 18:27:18 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG update:56 - Update completed -2016-05-03 18:27:18 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1874780}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG query:56 - Query completed -2016-05-03 18:27:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 18:27:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 18:27:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 18:27:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 18:27:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 18:27:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 18:27:18 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-03 18:27:18 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-03 18:27:18 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 18:27:18 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 18:27:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:27:18 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:27:18 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-03 18:27:18 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-03 18:27:18 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 18:27:18 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 18:27:18 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 18:27:18 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 18:27:18 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 18:27:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 18:27:18 DEBUG BucketCoding:42 - coding name done -2016-05-03 18:27:18 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 18:27:18 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 18:27:18 DEBUG MongoIO:77 - open mongo connection -2016-05-03 18:27:18 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 18:27:18 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:18 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:18 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2b1dec72, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6912ab4a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@48abbd2a, socketFactory=javax.net.DefaultSocketFactory@31035ac, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 18:27:18 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 18:27:18 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1874783}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:262835}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1319839, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1198601, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:18 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 18:27:18 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:18 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 18:27:18 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2144574}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=776173, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1874785}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1874785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1874785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1874785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1558377}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:27:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:27:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1874785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1463719, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 18:27:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1874785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 18:27:18 DEBUG command:56 - Command execution completed -2016-05-03 18:27:18 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:27:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1874785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 18:27:18 DEBUG query:56 - Query completed -2016-05-03 18:27:18 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-03 18:27:18 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2144574} -2016-05-03 18:27:18 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:262835} -2016-05-03 18:27:18 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1558377} -2016-05-03 18:27:18 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1874785}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 18:27:18 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1874785} -2016-05-03 18:27:18 INFO MongoIO:508 - Mongo has been closed -2016-05-03 18:27:18 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1874783} -2016-05-03 18:27:18 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-03 18:27:18 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-03 18:27:18 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-03 18:27:18 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-03 18:27:18 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 18:27:18 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-03 18:27:18 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:27:18 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:27:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 18:27:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 18:27:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 18:27:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 18:27:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 18:27:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 18:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:27:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:27:20 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2144570} -2016-05-03 18:27:20 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:262831} -2016-05-03 18:27:20 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1558372} -2016-05-03 18:27:20 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1874780}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 18:27:20 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1874780} -2016-05-03 18:27:20 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1874777} -2016-05-03 18:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:27:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:27:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:27:33 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-03 18:27:33 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-03 18:27:33 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-03 18:27:33 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-03 18:27:33 DEBUG WPS2SM:208 - Default Schema: null -2016-05-03 18:27:33 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-03 18:27:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 18:27:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-03 18:27:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:33 DEBUG SClient4WPS:684 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 18:27:33 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-03 18:27:33 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:27:33 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:27:33 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 18:27:33 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 18:27:33 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 18:27:33 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-03 18:27:33 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-03 18:27:33 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 18:27:33 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 18:27:33 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-03 18:27:33 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 18:27:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-03 18:27:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-03 18:27:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:33 DEBUG SClient4WPS:684 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 18:27:33 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-03 18:27:33 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:27:33 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:27:33 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-03 18:27:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-03 18:27:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-03 18:27:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:33 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-03 18:27:33 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-03 18:27:33 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:27:33 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:27:33 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 18:27:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-03 18:27:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-03 18:27:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:33 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 18:27:33 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-03 18:27:33 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:27:33 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:27:33 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-03 18:27:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-03 18:27:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-03 18:27:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:27:33 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-03 18:27:33 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:27:33 DEBUG SClient4WPS:692 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-03 18:27:33 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsClusterLabel, value=test -2016-05-03 18:27:33 DEBUG SClient4WPS:692 - UserInputs= key:epsilon, value=10 -2016-05-03 18:27:33 DEBUG SClient4WPS:692 - UserInputs= key:min_points, value=1 -2016-05-03 18:27:33 DEBUG SClient4WPS:753 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:27:33 DEBUG SClient4WPS:736 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-03 18:27:33 DEBUG SClient4WPS:736 - Configuring Literal: OccurrencePointsClusterLabel to: test -2016-05-03 18:27:33 DEBUG SClient4WPS:736 - Configuring Literal: epsilon to: 10 -2016-05-03 18:27:33 DEBUG SClient4WPS:736 - Configuring Literal: min_points to: 1 -2016-05-03 18:27:33 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:27:35 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-03 18:27:35 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 18:27:35 DEBUG SClient4WPS:403 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0 -2016-05-03 18:27:35 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:27:35 DEBUG SClient4WPS:773 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0 -2016-05-03 18:27:35 DEBUG SClient4WPS:698 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0 -2016-05-03 18:27:35 DEBUG SClient4WPS:709 - ComputationId: ComputationId [id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0] -2016-05-03 18:27:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 18:27:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 18:27:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:27:45 DEBUG SClient4WPS:789 - GetComputationStatus(): ComputationId=ComputationId [id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0] -2016-05-03 18:27:45 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 18:27:45 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 18:27:45 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0 -2016-05-03 18:27:45 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:27:45 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 18:27:45 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 18:27:45 DEBUG SClient4WPS:805 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/SXdoV0NFYzRuTWdMN21JNmxwWWp3QVUwbGp5QktOZnJHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-03 18:27:45 DEBUG SClient4WPS:863 - WPS SUCCESS -2016-05-03 18:27:45 DEBUG SClient4WPS:888 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-03 18:27:45 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0] -2016-05-03 18:27:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:27:45 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:27:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:27:45 DEBUG SClient4WPS:423 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0 -2016-05-03 18:27:45 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=5052b312-1b81-4f1d-915d-e52a1e9bb6b0 -2016-05-03 18:27:45 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:27:45 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 18:27:45 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 18:27:45 DEBUG SClient4WPS:434 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/SXdoV0NFYzRuTWdMN21JNmxwWWp3QVUwbGp5QktOZnJHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-03 18:27:45 DEBUG SClient4WPS:958 - Process Executed -2016-05-03 18:27:45 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-03 18:27:45 DEBUG SClient4WPS:574 - Node Name: #text -2016-05-03 18:27:45 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-03 18:27:45 DEBUG SClient4WPS:574 - Node Name: ogr:FeatureCollection -2016-05-03 18:27:45 DEBUG SClient4WPS:574 - Node Name: gml:featureMember -2016-05-03 18:27:45 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-03 18:27:45 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/SXdoV0NFYzRuTWdMN21JNmxwWWp3QVUwbGp5QktOZnJHbWJQNStIS0N6Yz0 -2016-05-03 18:27:45 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-05-03 18:27:45 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-03 18:27:45 DEBUG SClient4WPS:503 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/SXdoV0NFYzRuTWdMN21JNmxwWWp3QVUwbGp5QktOZnJHbWJQNStIS0N6Yz0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], mimeType=text/csv] -2016-05-03 18:27:45 DEBUG SClient4WPS:1006 - Adding OBJ:F0 -2016-05-03 18:27:45 DEBUG SClient4WPS:1012 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/SXdoV0NFYzRuTWdMN21JNmxwWWp3QVUwbGp5QktOZnJHbWJQNStIS0N6Yz0, name=F0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=OBJECT] -2016-05-03 18:27:45 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/SXdoV0NFYzRuTWdMN21JNmxwWWp3QVUwbGp5QktOZnJHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getDescription()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-03 18:28:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 18:28:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 18:28:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:28:00 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-03 18:28:00 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-03 18:28:00 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-03 18:28:00 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-03 18:28:00 DEBUG WPS2SM:208 - Default Schema: null -2016-05-03 18:28:00 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-03 18:28:00 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 18:28:00 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-03 18:28:00 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:00 DEBUG SClient4WPS:684 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 18:28:00 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-03 18:28:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:28:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:28:00 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 18:28:00 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 18:28:00 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 18:28:00 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-03 18:28:00 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-03 18:28:00 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 18:28:00 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 18:28:00 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-03 18:28:00 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 18:28:00 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-03 18:28:00 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-03 18:28:00 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:00 DEBUG SClient4WPS:684 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 18:28:00 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-03 18:28:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:28:00 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:28:00 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-03 18:28:00 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-03 18:28:00 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-03 18:28:00 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:00 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-03 18:28:00 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-03 18:28:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:28:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:28:00 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 18:28:00 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-03 18:28:00 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-03 18:28:00 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:00 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 18:28:00 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-03 18:28:00 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:28:00 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:28:00 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-03 18:28:00 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-03 18:28:00 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-03 18:28:00 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:00 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-03 18:28:00 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:28:00 DEBUG SClient4WPS:692 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-03 18:28:00 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsClusterLabel, value=test -2016-05-03 18:28:00 DEBUG SClient4WPS:692 - UserInputs= key:epsilon, value=10 -2016-05-03 18:28:00 DEBUG SClient4WPS:692 - UserInputs= key:min_points, value=1 -2016-05-03 18:28:00 DEBUG SClient4WPS:753 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:28:00 DEBUG SClient4WPS:736 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-03 18:28:00 DEBUG SClient4WPS:736 - Configuring Literal: OccurrencePointsClusterLabel to: test -2016-05-03 18:28:00 DEBUG SClient4WPS:736 - Configuring Literal: epsilon to: 10 -2016-05-03 18:28:00 DEBUG SClient4WPS:736 - Configuring Literal: min_points to: 1 -2016-05-03 18:28:00 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:28:01 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-03 18:28:01 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-03 18:28:01 DEBUG SClient4WPS:403 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a -2016-05-03 18:28:01 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 18:28:01 DEBUG SClient4WPS:773 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a -2016-05-03 18:28:01 DEBUG SClient4WPS:698 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a -2016-05-03 18:28:01 DEBUG SClient4WPS:709 - ComputationId: ComputationId [id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a] -2016-05-03 18:28:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:28:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 18:28:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:28:11 DEBUG SClient4WPS:789 - GetComputationStatus(): ComputationId=ComputationId [id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a] -2016-05-03 18:28:11 INFO StatWPSClientSession:114 - CONNECT -2016-05-03 18:28:11 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-03 18:28:11 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a -2016-05-03 18:28:11 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:28:11 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 18:28:11 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 18:28:11 DEBUG SClient4WPS:805 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/aTExa3lsb1dLUm9MN21JNmxwWWp3Ry9IdUZiN2ZoVnVHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-03 18:28:11 DEBUG SClient4WPS:863 - WPS SUCCESS -2016-05-03 18:28:11 DEBUG SClient4WPS:888 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-03 18:28:11 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a] -2016-05-03 18:28:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:28:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:28:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:28:11 DEBUG SClient4WPS:423 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a -2016-05-03 18:28:11 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=9b3ffdc8-08e2-44df-92a3-e429f8d6c94a -2016-05-03 18:28:11 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 18:28:11 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-03 18:28:11 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-03 18:28:11 DEBUG SClient4WPS:434 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/aTExa3lsb1dLUm9MN21JNmxwWWp3Ry9IdUZiN2ZoVnVHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-03 18:28:11 DEBUG SClient4WPS:958 - Process Executed -2016-05-03 18:28:11 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-03 18:28:11 DEBUG SClient4WPS:574 - Node Name: #text -2016-05-03 18:28:11 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-03 18:28:11 DEBUG SClient4WPS:574 - Node Name: ogr:FeatureCollection -2016-05-03 18:28:11 DEBUG SClient4WPS:574 - Node Name: gml:featureMember -2016-05-03 18:28:11 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-03 18:28:11 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/aTExa3lsb1dLUm9MN21JNmxwWWp3Ry9IdUZiN2ZoVnVHbWJQNStIS0N6Yz0 -2016-05-03 18:28:11 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-05-03 18:28:11 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-03 18:28:11 DEBUG SClient4WPS:503 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/aTExa3lsb1dLUm9MN21JNmxwWWp3Ry9IdUZiN2ZoVnVHbWJQNStIS0N6Yz0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], mimeType=text/csv] -2016-05-03 18:28:11 DEBUG SClient4WPS:1006 - Adding OBJ:F0 -2016-05-03 18:28:11 DEBUG SClient4WPS:1012 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/aTExa3lsb1dLUm9MN21JNmxwWWp3Ry9IdUZiN2ZoVnVHbWJQNStIS0N6Yz0, name=F0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=OBJECT] -2016-05-03 18:28:11 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/aTExa3lsb1dLUm9MN21JNmxwWWp3Ry9IdUZiN2ZoVnVHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getDescription()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-03 18:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 18:28:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 18:28:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 18:28:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 18:28:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 18:28:51 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-03 18:28:51 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-03 18:28:51 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-03 18:28:51 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-03 18:28:51 DEBUG WPS2SM:208 - Default Schema: null -2016-05-03 18:28:51 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-03 18:28:51 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-03 18:28:51 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-03 18:28:51 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:51 DEBUG SClient4WPS:684 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-03 18:28:51 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-03 18:28:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:28:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:28:51 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 18:28:51 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 18:28:51 DEBUG WPS2SM:111 - Machter find: true -2016-05-03 18:28:51 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-03 18:28:51 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-03 18:28:51 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-03 18:28:51 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-03 18:28:51 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-03 18:28:51 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-03 18:28:51 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-03 18:28:51 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-03 18:28:51 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:51 DEBUG SClient4WPS:684 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-03 18:28:51 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-03 18:28:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:28:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 18:28:51 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-03 18:28:51 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-03 18:28:51 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-03 18:28:51 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:51 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-03 18:28:51 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-03 18:28:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:28:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:28:51 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-03 18:28:51 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-03 18:28:51 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-03 18:28:51 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:51 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-03 18:28:51 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-03 18:28:51 DEBUG WPS2SM:92 - WPS type: -2016-05-03 18:28:51 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-03 18:28:51 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-03 18:28:51 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-03 18:28:51 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-03 18:28:51 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 18:28:51 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-03 18:28:51 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:28:51 DEBUG SClient4WPS:692 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-03 18:28:51 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsClusterLabel, value=test -2016-05-03 18:28:51 DEBUG SClient4WPS:692 - UserInputs= key:epsilon, value=10 -2016-05-03 18:28:51 DEBUG SClient4WPS:692 - UserInputs= key:min_points, value=1 -2016-05-03 18:28:51 DEBUG SClient4WPS:753 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-03 18:28:51 DEBUG SClient4WPS:736 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-03 18:28:51 DEBUG SClient4WPS:736 - Configuring Literal: OccurrencePointsClusterLabel to: test -2016-05-03 18:28:51 DEBUG SClient4WPS:736 - Configuring Literal: epsilon to: 10 -2016-05-03 18:28:51 DEBUG SClient4WPS:736 - Configuring Literal: min_points to: 1 -2016-05-03 18:28:51 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 18:28:51 DEBUG SClient4WPS:407 - ExecuteProcessAsync: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& -2016-05-03 18:28:51 DEBUG SClient4WPS:779 - WPSProcess->Returning Exception to the SM:Process error in WPS Execution -2016-05-03 18:28:51 ERROR DataMinerManagerServiceImpl:153 - Error in start computation: Process error in WPS Execution -2016-05-03 18:29:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 18:29:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 09:54:27 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 09:54:27 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 09:54:27 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-04 09:54:27 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 09:54:28 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 09:54:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 09:54:28 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 09:54:28 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@45dce2cc -2016-05-04 09:54:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 09:54:28 INFO ASLSession:352 - Logging the entrance -2016-05-04 09:54:28 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 09:54:28 DEBUG TemplateModel:83 - 2016-05-04 09:54:28, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 09:54:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 09:54:28 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 09:54:29 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 09:54:29 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 09:54:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 09:54:29 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 09:54:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 09:54:29 INFO ASLSession:352 - Logging the entrance -2016-05-04 09:54:29 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 09:54:29 DEBUG TemplateModel:83 - 2016-05-04 09:54:29, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 09:54:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 09:54:29 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 09:54:29 INFO DefaultScanner:63 - matched 28 resources from 113 urls in 103 ms -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 09:54:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 09:54:29 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 09:54:30 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 09:54:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 09:54:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7a0f1c31 -2016-05-04 09:54:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3b76b269 -2016-05-04 09:54:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@f55d987 -2016-05-04 09:54:30 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@35ffb1e2 -2016-05-04 09:54:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 161 ms -2016-05-04 09:54:30 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 09:54:30 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 09:54:30 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 09:54:30 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 09:54:30 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 09:54:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 09:54:30 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 09:54:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 09:54:30 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 09:54:30 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 09:54:30 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 09:54:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 09:54:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 09:54:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 09:54:30 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 09:54:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 09:54:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 09:54:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 32 ms -2016-05-04 09:54:30 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 09:54:30 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 09:54:30 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 09:54:30 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 09:54:30 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 09:54:30 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 09:54:30 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 09:54:30 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 09:54:30 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 09:54:30 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 09:54:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-04 09:54:30 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 09:54:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 09:54:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 20 ms -2016-05-04 09:54:31 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 09:54:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 09:54:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 09:54:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 09:54:31 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 09:54:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 09:54:31 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 09:54:31 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 09:54:31 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 09:54:31 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 09:54:31 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 09:54:31 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 09:54:31 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 09:54:31 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 09:54:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 09:54:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 09:54:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 09:54:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 09:54:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 09:54:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 09:54:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 09:54:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 09:54:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 09:54:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 09:54:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 09:54:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 09:54:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 09:54:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 09:54:31 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 09:54:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 09:54:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 09:54:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 09:54:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 09:54:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 09:54:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 09:54:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 09:54:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 09:54:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 09:54:31 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 09:54:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 09:54:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 09:54:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 09:54:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 09:54:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 09:54:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 09:54:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 09:54:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 09:54:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 09:54:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 09:54:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 09:54:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 09:54:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 09:54:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 09:54:32 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 09:54:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 09:54:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 09:54:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 09:54:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 09:54:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 09:54:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 09:54:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 09:54:32 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 09:54:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 09:54:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 09:54:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 09:54:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 09:54:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 09:54:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 09:54:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 09:54:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 09:54:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 09:54:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 09:54:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 09:54:32 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 09:54:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 09:54:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 09:54:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 09:54:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 09:54:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 09:54:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 09:54:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 09:54:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 09:54:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 09:54:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 09:54:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 09:54:32 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 09:54:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 09:54:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 09:54:33 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 09:54:33 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 10:13:37 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 10:13:37 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 10:13:37 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-04 10:13:37 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:13:37 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:13:37 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-04 10:13:37 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:13:37 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@55a2d006 -2016-05-04 10:13:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 10:13:37 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:13:37 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:13:37 DEBUG TemplateModel:83 - 2016-05-04 10:13:37, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:13:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:13:37 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 10:13:40 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:13:40 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:13:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:13:40 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:13:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:13:40 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:13:40 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:13:40 DEBUG TemplateModel:83 - 2016-05-04 10:13:40, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:13:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:13:40 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:13:40 INFO DefaultScanner:63 - matched 28 resources from 113 urls in 122 ms -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 10:13:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 10:13:40 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 10:13:40 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:13:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:13:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@65e544af -2016-05-04 10:13:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@73621baa -2016-05-04 10:13:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@44559b23 -2016-05-04 10:13:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@106ab05d -2016-05-04 10:13:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 98 ms -2016-05-04 10:13:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 10:13:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 10:13:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 10:13:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 10:13:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 10:13:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:13:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:13:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 10:13:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 21 ms -2016-05-04 10:13:41 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 10:13:41 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:13:41 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 10:13:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:13:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:13:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:13:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:13:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:13:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:13:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:13:41 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 10:13:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:13:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:13:41 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 10:13:41 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 10:13:41 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 10:13:41 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 10:13:41 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 10:13:41 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 10:13:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 10:13:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:13:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 10:13:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-04 10:13:42 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 10:13:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:13:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:13:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 10:13:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 10:13:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:13:42 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:13:42 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 10:13:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:13:42 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:13:42 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:13:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:13:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:13:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:13:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 10:13:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:13:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:13:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:13:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:13:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:13:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:13:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:13:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 10:13:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:13:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:13:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:13:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:13:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:13:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:13:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:13:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 10:13:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:13:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:13:42 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 10:13:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:13:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:13:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:13:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:13:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:13:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:13:43 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:13:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 10:13:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:13:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:13:43 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:13:43 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:13:43 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:13:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:13:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:13:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:13:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:13:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:13:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:13:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:13:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:13:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:13:43 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 10:13:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:13:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:13:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:13:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:13:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:13:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:13:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:13:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:13:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:13:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:13:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:13:43 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 10:13:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:13:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:13:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:13:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:13:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:13:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:13:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:13:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:13:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:13:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:13:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:13:44 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 10:13:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:13:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:19 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 10:18:19 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 10:18:19 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-04 10:18:19 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:18:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:18:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:18:19 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:18:19 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@26865ddd -2016-05-04 10:18:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:18:19 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:18:19 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:18:19 DEBUG TemplateModel:83 - 2016-05-04 10:18:19, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:18:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:18:19 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 10:18:22 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:18:22 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:18:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:18:22 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:18:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:18:22 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:18:22 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:18:22 DEBUG TemplateModel:83 - 2016-05-04 10:18:22, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:18:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:18:22 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:18:22 INFO DefaultScanner:63 - matched 28 resources from 113 urls in 125 ms -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 10:18:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 10:18:22 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 10:18:22 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:18:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:18:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2329f795 -2016-05-04 10:18:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@34979264 -2016-05-04 10:18:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5ad9a2a -2016-05-04 10:18:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@1513c1c8 -2016-05-04 10:18:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 103 ms -2016-05-04 10:18:22 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 10:18:22 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 10:18:22 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 10:18:22 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 10:18:22 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 10:18:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:18:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:18:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 10:18:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-04 10:18:22 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 10:18:22 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:18:22 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 10:18:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:18:23 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:18:23 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:18:23 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:18:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:18:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:18:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:18:23 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 10:18:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:23 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 10:18:23 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 10:18:23 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 10:18:23 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 10:18:23 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 10:18:23 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 10:18:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 10:18:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:18:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 10:18:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 23 ms -2016-05-04 10:18:23 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 10:18:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:18:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:23 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 10:18:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:23 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 10:18:23 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:18:23 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:18:23 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 10:18:23 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:18:23 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:18:23 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 10:18:23 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 10:18:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:23 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:18:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:18:24 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 10:18:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 10:18:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:18:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 10:18:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:18:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 10:18:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:18:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 10:18:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:25 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:18:25 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:18:25 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:18:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:18:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:18:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:18:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:25 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 10:18:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:18:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:18:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:18:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:18:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:18:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:18:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:25 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 10:18:25 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 10:18:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:26 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 10:18:26 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 10:18:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 10:18:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:18:26 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 10:18:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:18:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 10:18:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-04 10:18:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 10:18:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:18:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 10:18:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-04 10:18:26 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 10:18:26 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 10:18:26 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 10:18:26 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 10:18:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 10:18:26 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 10:18:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 10:18:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:18:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 10:18:26 INFO WorkspaceExplorerServiceImpl:188 - end time - 159 msc 0 sec -2016-05-04 10:18:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-04 10:18:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 10:18:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 10:18:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 10:18:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:18:26 INFO WorkspaceExplorerServiceImpl:188 - end time - 850 msc 0 sec -2016-05-04 10:18:26 INFO WorkspaceExplorerServiceImpl:188 - end time - 391 msc 0 sec -2016-05-04 10:18:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:18:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:18:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:18:48 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 10:18:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:18:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:18:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:18:49 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:18:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:18:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:18:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:18:50 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 10:18:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:50 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:18:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 10:18:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:50 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:18:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 10:18:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:50 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:18:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 10:18:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:50 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:18:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 10:18:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:18:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:18:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:51 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:18:51 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 10:18:51 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 10:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:18:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:18:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:51 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 10:18:51 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 10:18:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 92 msc 0 sec -2016-05-04 10:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:18:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:18:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:18:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:18:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:18:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:18:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:18:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:18:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:18:51 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 10:18:51 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 10:18:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:18:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:18:51 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 10:18:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 144 msc 0 sec -2016-05-04 10:18:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 202 msc 0 sec -2016-05-04 10:19:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:19:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:19:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:19:04 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-04 10:19:04 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:19:04 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:19:05 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-04 10:19:05 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-04 10:19:05 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-04 10:19:05 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-04 10:19:05 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-04 10:19:05 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-04 10:19:05 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-04 10:19:05 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-04 10:19:05 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-04 10:19:05 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-04 10:19:05 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:19:05 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 10:19:05 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 10:19:05 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 10:19:05 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 10:19:05 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 10:19:05 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 10:19:05 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 10:19:05 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:05 DEBUG SClient4WPS:652 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 10:19:05 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 10:19:05 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:19:05 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:19:05 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 10:19:05 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 10:19:05 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 10:19:05 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 10:19:05 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 10:19:05 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 10:19:05 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 10:19:05 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 10:19:05 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 10:19:05 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 10:19:05 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 10:19:05 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:05 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 10:19:05 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 10:19:05 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:19:05 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:19:05 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 10:19:05 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 10:19:05 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 10:19:05 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:05 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 10:19:05 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 10:19:05 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:19:05 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:19:05 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 10:19:05 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 10:19:05 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 10:19:05 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:05 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 10:19:05 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 10:19:05 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:19:05 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:19:05 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 10:19:05 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 10:19:05 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 10:19:05 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:05 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 10:19:05 DEBUG SClient4WPS:656 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:19:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:19:05 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:19:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:19:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:19:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-04 10:19:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:19:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:19:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:19:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:19:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:19:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:19:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:19:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:19:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:19:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:19:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:19:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:19:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:19:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:19:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:19:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:19:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:19:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-04 10:19:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-04 10:19:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-04 10:19:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-04 10:19:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 10:19:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-04 10:19:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 10:19:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-04 10:19:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 214 msc 0 sec -2016-05-04 10:19:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-04 10:19:17 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:19:17 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:19:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:19:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:19:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:19:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:17 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:19:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:19:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:19:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:19:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:17 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:19:17 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:19:17 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:19:17 DEBUG ServiceEngine:306 - get() - start -2016-05-04 10:19:17 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:19:17 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:19:17 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-04 10:19:17 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-04 10:19:17 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:19:17 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:19:17 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 10:19:17 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:19:17 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 10:19:17 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:19:17 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:19:17 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:19:17 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:19:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:19:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:19:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:19:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:19:17 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:19:17 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:19:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:19:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:19:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:17 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:19:17 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:19:17 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:19:17 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:17 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:19:17 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:19:18 INFO WorkspaceExplorerServiceImpl:188 - end time - 69 msc 0 sec -2016-05-04 10:19:18 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:19:18 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 10:19:18 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:18 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:18 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e8ca60a1, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6ba07958, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@747eb79b, socketFactory=javax.net.DefaultSocketFactory@2b485cdd, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:19:18 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:19:18 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:19:18 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:272986}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1885203}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1518617, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:18 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:19:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=4185491, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:18 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:18 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:18 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:18 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2154531}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1024723, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:18 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1568336}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1255709, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:19:18 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1885204}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG command:56 - Command execution completed -2016-05-04 10:19:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG command:56 - Command execution completed -2016-05-04 10:19:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG command:56 - Command execution completed -2016-05-04 10:19:18 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:19:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG command:56 - Command execution completed -2016-05-04 10:19:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:18 DEBUG command:56 - Command execution completed -2016-05-04 10:19:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1885204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:19:20 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:19:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:19:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:19:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:19:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:20 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:19:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:19:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:19:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:19:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:20 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:19:20 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:19:20 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:19:20 DEBUG ServiceEngine:306 - get() - start -2016-05-04 10:19:20 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:19:20 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:19:20 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-04 10:19:20 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 10:19:20 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:19:20 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:19:20 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 10:19:20 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:19:20 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:19:20 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:19:20 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:19:20 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:19:20 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:19:20 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:19:20 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:19:20 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:20 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:20 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:20 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e8ca60a1, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6ba07958, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@747eb79b, socketFactory=javax.net.DefaultSocketFactory@2b485cdd, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:19:20 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:19:20 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:19:20 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1885205}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:272987}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1432060, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:20 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:19:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1472316, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:20 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:20 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:20 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:20 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2154533}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=934437, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:20 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1568337}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1255898, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:19:20 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1885206}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG command:56 - Command execution completed -2016-05-04 10:19:20 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG command:56 - Command execution completed -2016-05-04 10:19:20 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG command:56 - Command execution completed -2016-05-04 10:19:20 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:19:20 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG command:56 - Command execution completed -2016-05-04 10:19:20 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG command:56 - Command execution completed -2016-05-04 10:19:20 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1885206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG query:56 - Query completed -2016-05-04 10:19:20 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-04 10:19:20 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2154531} -2016-05-04 10:19:20 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:272986} -2016-05-04 10:19:20 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1568336} -2016-05-04 10:19:20 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1885204}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:19:20 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1885204} -2016-05-04 10:19:20 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1885203} -2016-05-04 10:19:20 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:19:20 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:19:20 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:19:20 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-04 10:19:20 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:19:21 DEBUG query:56 - Query completed -2016-05-04 10:19:21 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-04 10:19:21 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2154533} -2016-05-04 10:19:21 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1568337} -2016-05-04 10:19:21 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1885206}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:19:21 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1885206} -2016-05-04 10:19:21 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:272987} -2016-05-04 10:19:21 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:19:21 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:19:21 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:19:21 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1885205} -2016-05-04 10:19:21 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:19:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:19:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:19:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:19:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:19:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:21 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:19:21 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:19:21 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:19:21 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:19:21 INFO WorkspaceExplorerServiceImpl:188 - end time - 46 msc 0 sec -2016-05-04 10:19:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:19:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:19:21 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:19:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:19:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 10:19:21 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:19:21 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:19:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:19:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:21 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:19:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:19:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:21 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:19:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:19:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:22 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:19:22 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:19:22 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:19:22 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 10:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:19:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:19:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:19:23 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-04 10:19:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:23 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:19:23 DEBUG ServiceEngine:193 - get() - start -2016-05-04 10:19:23 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:19:23 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:19:23 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 10:19:23 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:19:23 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:19:23 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:19:23 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-04 10:19:23 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:19:23 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:19:23 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:19:23 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:19:23 DEBUG Operation:173 - get(String) - start -2016-05-04 10:19:23 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:19:23 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:19:23 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:19:23 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:19:23 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:23 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:23 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e8ca60a1, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6ba07958, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@747eb79b, socketFactory=javax.net.DefaultSocketFactory@2b485cdd, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:19:23 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:19:23 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:272988}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1885209}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1296666, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:23 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:19:23 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:23 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1386609, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:23 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2154534}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1300279, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1568339}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2048066, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1885210}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 10:19:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:19:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:19:23 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG query:56 - Query completed -2016-05-04 10:19:23 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 10:19:23 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 10:19:23 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-04 10:19:23 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG update:56 - Update completed -2016-05-04 10:19:23 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1885210}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG query:56 - Query completed -2016-05-04 10:19:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:19:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:19:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:19:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:19:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:19:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:19:23 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:19:23 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-04 10:19:23 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-04 10:19:23 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-04 10:19:23 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:19:23 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:19:23 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 10:19:23 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:19:23 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-04 10:19:23 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:19:23 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-04 10:19:23 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-04 10:19:23 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:19:23 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:19:23 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:19:23 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:19:23 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:19:23 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:19:23 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:19:23 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:23 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:23 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e8ca60a1, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6ba07958, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@747eb79b, socketFactory=javax.net.DefaultSocketFactory@2b485cdd, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:19:23 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:19:23 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:272989}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1100528, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:23 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:19:23 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:23 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1885211}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1424809, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:23 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2154535}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=980906, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1568340}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1019054, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-04 10:19:23 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1885212}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885212}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885212}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885212}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:19:23 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:19:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885212}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885212}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG command:56 - Command execution completed -2016-05-04 10:19:23 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:19:23 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1885212}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG query:56 - Query completed -2016-05-04 10:19:23 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 10:19:23 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2154535} -2016-05-04 10:19:23 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:272989} -2016-05-04 10:19:23 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1885212}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:19:23 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1568340} -2016-05-04 10:19:23 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1885212} -2016-05-04 10:19:23 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:19:23 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1885211} -2016-05-04 10:19:23 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:19:23 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:19:23 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:19:23 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:19:23 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-04 10:19:23 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:19:23 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:19:23 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:19:23 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:19:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-04 10:19:28 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2154534} -2016-05-04 10:19:28 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1885210}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:19:28 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:272988} -2016-05-04 10:19:28 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1885210} -2016-05-04 10:19:28 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1568339} -2016-05-04 10:19:28 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1885209} -2016-05-04 10:19:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:19:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:19:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:19:39 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-04 10:19:39 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 10:19:39 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 10:19:39 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 10:19:39 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 10:19:39 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 10:19:39 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 10:19:39 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 10:19:39 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:39 DEBUG SClient4WPS:684 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 10:19:39 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 10:19:39 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:19:39 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:19:39 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 10:19:39 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 10:19:39 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 10:19:39 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 10:19:39 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 10:19:39 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 10:19:39 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 10:19:39 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 10:19:39 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 10:19:39 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 10:19:39 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 10:19:39 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:39 DEBUG SClient4WPS:684 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 10:19:39 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 10:19:39 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:19:39 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:19:39 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 10:19:39 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 10:19:39 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 10:19:39 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:39 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 10:19:39 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 10:19:39 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:19:39 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:19:39 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 10:19:39 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 10:19:39 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 10:19:39 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:39 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 10:19:39 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 10:19:39 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:19:39 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:19:39 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 10:19:39 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 10:19:39 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 10:19:39 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:19:39 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 10:19:39 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:19:39 DEBUG SClient4WPS:692 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-04 10:19:39 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-05-04 10:19:39 DEBUG SClient4WPS:692 - UserInputs= key:epsilon, value=10 -2016-05-04 10:19:39 DEBUG SClient4WPS:692 - UserInputs= key:min_points, value=1 -2016-05-04 10:19:39 DEBUG SClient4WPS:753 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:19:39 DEBUG SClient4WPS:736 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-04 10:19:39 DEBUG SClient4WPS:736 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-05-04 10:19:39 DEBUG SClient4WPS:736 - Configuring Literal: epsilon to: 10 -2016-05-04 10:19:39 DEBUG SClient4WPS:736 - Configuring Literal: min_points to: 1 -2016-05-04 10:19:39 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:19:55 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:19:55 ERROR DataMinerManagerServiceImpl:153 - Error in start computation: PermGen space -2016-05-04 10:27:03 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 10:27:03 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 10:27:03 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-04 10:27:03 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:27:03 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:27:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:27:03 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:27:03 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@1417d084 -2016-05-04 10:27:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:27:03 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:27:03 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:27:03 DEBUG TemplateModel:83 - 2016-05-04 10:27:03, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:27:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:27:03 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 10:27:05 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:27:05 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:27:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:27:05 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:27:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:27:05 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:27:05 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:27:05 DEBUG TemplateModel:83 - 2016-05-04 10:27:05, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:27:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:27:06 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:27:06 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 144 ms -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 10:27:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 10:27:06 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 10:27:06 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:27:06 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:27:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@59b9d77e -2016-05-04 10:27:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6387be36 -2016-05-04 10:27:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@65888dd -2016-05-04 10:27:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@18a7671e -2016-05-04 10:27:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 247 ms -2016-05-04 10:27:07 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 10:27:07 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 10:27:07 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 10:27:07 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 10:27:07 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 10:27:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:27:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:27:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 10:27:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 16 ms -2016-05-04 10:27:07 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 10:27:07 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:27:07 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 10:27:07 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:27:07 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:27:07 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:27:07 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:27:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:27:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:27:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:27:07 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 10:27:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:07 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 10:27:07 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 10:27:07 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 10:27:07 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 10:27:07 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 10:27:07 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 10:27:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 10:27:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:27:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 10:27:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-04 10:27:07 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 10:27:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:27:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:07 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 10:27:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:07 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 10:27:08 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:27:08 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:27:08 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 10:27:08 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:27:08 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:27:08 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 10:27:08 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 10:27:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:08 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:27:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 10:27:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:27:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 10:27:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:08 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:27:08 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 10:27:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:27:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 10:27:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:27:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 10:27:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:09 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:27:09 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:27:09 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:27:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:27:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:09 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 10:27:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:09 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 10:27:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:09 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 10:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:27:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:27:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:10 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 10:27:10 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 10:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 10:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:27:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:27:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 10:27:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-04 10:27:10 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 10:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 10:27:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:27:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 10:27:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-04 10:27:10 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 10:27:10 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 10:27:10 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 10:27:10 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 10:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 10:27:10 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 10:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 10:27:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:27:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 10:27:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-04 10:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 10:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 10:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 10:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:27:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 424 msc 0 sec -2016-05-04 10:27:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 392 msc 0 sec -2016-05-04 10:27:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 250 msc 0 sec -2016-05-04 10:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 10:27:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 10:27:20 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:27:20 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-04 10:27:20 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:27:20 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:27:21 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-04 10:27:21 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-04 10:27:21 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-04 10:27:21 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-04 10:27:21 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-04 10:27:21 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-04 10:27:21 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-04 10:27:21 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-04 10:27:21 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-04 10:27:21 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-04 10:27:21 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:27:21 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 10:27:21 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 10:27:21 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 10:27:21 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 10:27:21 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 10:27:21 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 10:27:21 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 10:27:21 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:21 DEBUG SClient4WPS:652 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 10:27:21 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 10:27:21 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:27:21 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:27:21 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 10:27:21 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 10:27:21 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 10:27:21 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 10:27:21 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 10:27:21 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 10:27:21 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 10:27:21 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 10:27:21 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 10:27:21 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 10:27:21 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 10:27:21 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:21 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 10:27:21 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 10:27:21 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:27:21 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:27:21 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 10:27:21 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 10:27:21 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 10:27:21 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:21 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 10:27:21 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 10:27:21 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:27:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:27:21 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 10:27:21 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 10:27:21 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 10:27:21 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:21 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 10:27:21 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 10:27:21 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:27:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:27:21 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 10:27:21 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 10:27:21 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 10:27:21 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:21 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 10:27:21 DEBUG SClient4WPS:656 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:27:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:27:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-04 10:27:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-04 10:27:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:27:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:27:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:27:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:27:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:27:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:27:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:27:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:27:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:27:21 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-04 10:27:21 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-04 10:27:21 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-04 10:27:21 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-04 10:27:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 10:27:21 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-04 10:27:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 10:27:21 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-04 10:27:21 INFO WorkspaceExplorerServiceImpl:142 - end time - 225 msc 0 sec -2016-05-04 10:27:21 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-04 10:27:28 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:27:28 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:27:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:27:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:27:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:27:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:28 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:27:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 10:27:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 10:27:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 10:27:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:27:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:27:28 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:27:28 DEBUG ServiceEngine:306 - get() - start -2016-05-04 10:27:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:27:28 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:27:28 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-04 10:27:28 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-04 10:27:28 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:27:28 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:27:28 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 10:27:28 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:27:28 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 10:27:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:27:28 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:27:28 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:27:28 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:27:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:27:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:28 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:27:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:27:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:27:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:27:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:27:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:27:28 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:27:28 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:27:28 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:27:28 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:28 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:27:28 INFO WorkspaceExplorerServiceImpl:188 - end time - 73 msc 0 sec -2016-05-04 10:27:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:27:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 10:27:28 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:28 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:28 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc5b4231, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@63e66ba9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2ca6577c, socketFactory=javax.net.DefaultSocketFactory@5cb9a4ca, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:27:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:27:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:27:29 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:273071}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1346719, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:27:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:29 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1885293}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1445722, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:29 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2154616}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=981779, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:29 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1568422}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1219628, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-04 10:27:29 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1885294}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885294}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG command:56 - Command execution completed -2016-05-04 10:27:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885294}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG command:56 - Command execution completed -2016-05-04 10:27:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885294}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG command:56 - Command execution completed -2016-05-04 10:27:29 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:27:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885294}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG command:56 - Command execution completed -2016-05-04 10:27:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885294}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG command:56 - Command execution completed -2016-05-04 10:27:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1885294}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:27:29 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:27:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 10:27:29 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 10:27:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 10:27:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:29 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:27:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:27:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:27:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:27:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:29 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:27:29 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:27:29 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:27:29 DEBUG ServiceEngine:306 - get() - start -2016-05-04 10:27:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:27:29 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:27:29 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-04 10:27:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 10:27:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:27:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:27:29 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 10:27:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:27:29 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:27:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:27:29 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:27:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:27:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:27:29 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:27:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:27:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc5b4231, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@63e66ba9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2ca6577c, socketFactory=javax.net.DefaultSocketFactory@5cb9a4ca, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:27:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:27:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:27:29 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:273072}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1403488, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:29 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1885295}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:27:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:27:29 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:27:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:27:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:27:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1609653, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:29 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:27:29 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2154617}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:27:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=927886, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:30 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:27:30 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1568423}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:27:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:27:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1209144, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-04 10:27:30 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:27:30 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:27:30 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1885296}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885296}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:30 DEBUG command:56 - Command execution completed -2016-05-04 10:27:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885296}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:30 DEBUG command:56 - Command execution completed -2016-05-04 10:27:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885296}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:30 DEBUG command:56 - Command execution completed -2016-05-04 10:27:30 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:27:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885296}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:30 DEBUG command:56 - Command execution completed -2016-05-04 10:27:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885296}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:30 DEBUG command:56 - Command execution completed -2016-05-04 10:27:30 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1885296}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:30 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:27:30 INFO WorkspaceExplorerServiceImpl:188 - end time - 41 msc 0 sec -2016-05-04 10:27:30 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:27:30 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:27:30 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:27:30 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 10:27:30 DEBUG query:56 - Query completed -2016-05-04 10:27:30 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2154616} -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:273071} -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1568422} -2016-05-04 10:27:30 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1885294}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1885294} -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1885293} -2016-05-04 10:27:30 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:27:30 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:27:30 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:27:30 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-04 10:27:30 DEBUG query:56 - Query completed -2016-05-04 10:27:30 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2154617} -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:273072} -2016-05-04 10:27:30 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1885296}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1568423} -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1885296} -2016-05-04 10:27:30 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:27:30 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1885295} -2016-05-04 10:27:30 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:27:30 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:27:30 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 10:27:30 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:27:30 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:27:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:27:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:27:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:30 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:27:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:27:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:27:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:27:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:30 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:27:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:27:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:27:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:27:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:30 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:27:30 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:27:30 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:27:30 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 10:27:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 10:27:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 10:27:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:27:31 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-04 10:27:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:31 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:27:31 DEBUG ServiceEngine:193 - get() - start -2016-05-04 10:27:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:27:31 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:27:31 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 10:27:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:27:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:27:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:27:31 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-04 10:27:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:27:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:27:31 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:27:31 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:27:31 DEBUG Operation:173 - get(String) - start -2016-05-04 10:27:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:27:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:27:31 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:27:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:27:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc5b4231, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@63e66ba9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2ca6577c, socketFactory=javax.net.DefaultSocketFactory@5cb9a4ca, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:27:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:27:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:27:31 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:273073}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:27:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:27:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1323555, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:27:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:31 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1885297}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1347794, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:31 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2154618}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:27:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:27:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1001388, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:32 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1568424}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1320412, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:27:32 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1885298}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 10:27:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:27:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:27:32 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG query:56 - Query completed -2016-05-04 10:27:32 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 10:27:32 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 10:27:32 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-04 10:27:32 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG update:56 - Update completed -2016-05-04 10:27:32 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1885298}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG query:56 - Query completed -2016-05-04 10:27:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:27:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:27:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:27:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:27:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:27:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:27:32 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:27:32 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-04 10:27:32 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-04 10:27:32 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-04 10:27:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:27:32 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:27:32 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 10:27:32 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:27:32 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-04 10:27:32 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:27:32 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-04 10:27:32 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-04 10:27:32 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:27:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:27:32 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:27:32 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:27:32 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:27:32 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:27:32 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:27:32 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:32 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:32 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:32 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fc5b4231, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@63e66ba9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2ca6577c, socketFactory=javax.net.DefaultSocketFactory@5cb9a4ca, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:27:32 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:27:32 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:27:32 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1885299}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1379808, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:32 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:27:32 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:32 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:27:32 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:32 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:273074}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2154619}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1099234, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=876655, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:27:32 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1568425}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2028850, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:27:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-04 10:27:32 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1885300}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885300}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885300}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885300}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:27:32 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:27:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885300}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885300}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG command:56 - Command execution completed -2016-05-04 10:27:32 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:27:32 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1885300}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG query:56 - Query completed -2016-05-04 10:27:32 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 10:27:32 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2154619} -2016-05-04 10:27:32 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:273074} -2016-05-04 10:27:32 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1885300}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:27:32 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1568425} -2016-05-04 10:27:32 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1885300} -2016-05-04 10:27:32 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1885299} -2016-05-04 10:27:32 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:27:32 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:27:32 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:27:32 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:27:32 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:27:32 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-04 10:27:32 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:27:32 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:27:32 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:27:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:27:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:27:37 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2154618} -2016-05-04 10:27:37 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1885298}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:27:37 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1885298} -2016-05-04 10:27:37 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1568424} -2016-05-04 10:27:37 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:273073} -2016-05-04 10:27:37 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1885297} -2016-05-04 10:27:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:27:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:27:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:27:46 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-04 10:27:46 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 10:27:46 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 10:27:46 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 10:27:46 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 10:27:46 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 10:27:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 10:27:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 10:27:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:46 DEBUG SClient4WPS:684 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 10:27:46 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 10:27:46 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:27:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:27:46 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 10:27:46 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 10:27:46 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 10:27:46 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 10:27:46 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 10:27:46 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 10:27:46 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 10:27:46 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 10:27:46 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 10:27:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 10:27:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 10:27:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:46 DEBUG SClient4WPS:684 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 10:27:46 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 10:27:46 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:27:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:27:46 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 10:27:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 10:27:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 10:27:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:46 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 10:27:46 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 10:27:46 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:27:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:27:46 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 10:27:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 10:27:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 10:27:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:46 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 10:27:46 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 10:27:46 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:27:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:27:46 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 10:27:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 10:27:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 10:27:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:27:46 DEBUG SClient4WPS:684 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 10:27:46 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:27:46 DEBUG SClient4WPS:692 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-04 10:27:46 DEBUG SClient4WPS:692 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-05-04 10:27:46 DEBUG SClient4WPS:692 - UserInputs= key:epsilon, value=10 -2016-05-04 10:27:46 DEBUG SClient4WPS:692 - UserInputs= key:min_points, value=1 -2016-05-04 10:27:46 DEBUG SClient4WPS:753 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:27:46 DEBUG SClient4WPS:736 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-04 10:27:46 DEBUG SClient4WPS:736 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-05-04 10:27:46 DEBUG SClient4WPS:736 - Configuring Literal: epsilon to: 10 -2016-05-04 10:27:46 DEBUG SClient4WPS:736 - Configuring Literal: min_points to: 1 -2016-05-04 10:27:46 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:27:47 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-04 10:27:47 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-04 10:27:49 DEBUG SClient4WPS:407 - ExecuteProcessAsync: net.opengis.ows.x11.impl.ExceptionReportDocumentImpl cannot be cast to net.opengis.wps.x100.impl.ExecuteResponseDocumentImpl -2016-05-04 10:27:49 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:27:49 DEBUG SClient4WPS:779 - WPSProcess->Returning Exception to the SM:Process error in WPS Execution -2016-05-04 10:27:49 ERROR DataMinerManagerServiceImpl:153 - Error in start computation: Process error in WPS Execution -2016-05-04 10:27:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:27:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:28:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:28:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:29:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:29:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:30:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 10:30:43 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 10:31:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:31:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:32:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:32:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:33:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 10:33:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 10:34:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:34:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:35:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:35:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:36:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 10:36:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 10:37:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:37:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:38:12 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 10:38:12 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 10:38:12 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-04 10:38:12 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:38:12 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:38:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:38:12 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:38:12 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4858fcfe -2016-05-04 10:38:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:12 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:38:12 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:38:12 DEBUG TemplateModel:83 - 2016-05-04 10:38:12, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:38:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:38:12 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 10:38:14 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:38:14 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:38:14 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:38:14 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:14 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:38:14 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:38:14 DEBUG TemplateModel:83 - 2016-05-04 10:38:14, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:38:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:38:14 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:38:14 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 109 ms -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 10:38:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 10:38:15 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 10:38:15 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:38:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:38:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@d55cfaa -2016-05-04 10:38:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@47757de5 -2016-05-04 10:38:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4b807cfc -2016-05-04 10:38:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@563689c2 -2016-05-04 10:38:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 94 ms -2016-05-04 10:38:15 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 10:38:15 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:38:15 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:38:15 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:38:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:38:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:38:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:38:15 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 10:38:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:16 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 10:38:16 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 10:38:16 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 10:38:16 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 10:38:16 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 10:38:16 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 10:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 10:38:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:38:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 10:38:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 91 ms -2016-05-04 10:38:16 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 10:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:38:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:16 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 10:38:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:16 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 10:38:18 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 10:38:18 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 10:38:18 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 10:38:18 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 10:38:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:18 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:38:18 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 10:38:18 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-04 10:38:18 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 10:38:18 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:38:18 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 10:38:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:38:19 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:38:19 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 10:38:20 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:38:20 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:38:20 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 10:38:20 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:38:20 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:38:20 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 10:38:20 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 10:38:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:20 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:38:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 10:38:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:38:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 10:38:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:38:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 10:38:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:38:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 10:38:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:21 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:38:21 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:38:21 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:38:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:38:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:21 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 10:38:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:38:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:22 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 10:38:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:38:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:38:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:22 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 10:38:22 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 10:38:22 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 10:38:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:38:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 10:38:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 10:38:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:38:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 10:38:22 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 10:38:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-04 10:38:22 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 10:38:22 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 10:38:22 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 10:38:22 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 10:38:22 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 10:38:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:38:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 10:38:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 10:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 401 msc 0 sec -2016-05-04 10:38:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 346 msc 0 sec -2016-05-04 10:38:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 274 msc 0 sec -2016-05-04 10:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:38:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:38:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:38:27 INFO SClient4WPS:643 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-04 10:38:27 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:38:27 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:38:28 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-04 10:38:28 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-04 10:38:28 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-04 10:38:28 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-04 10:38:28 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-04 10:38:28 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-04 10:38:28 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-04 10:38:28 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-04 10:38:28 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-04 10:38:28 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-04 10:38:28 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:38:28 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 10:38:28 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 10:38:28 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 10:38:28 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 10:38:28 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 10:38:28 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 10:38:28 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 10:38:28 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:28 DEBUG SClient4WPS:660 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 10:38:28 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 10:38:28 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:38:28 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:38:28 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 10:38:28 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 10:38:28 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 10:38:28 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 10:38:28 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 10:38:28 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 10:38:28 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 10:38:28 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 10:38:28 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 10:38:28 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 10:38:28 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 10:38:28 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:28 DEBUG SClient4WPS:660 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 10:38:28 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 10:38:28 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:38:28 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:38:28 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 10:38:28 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 10:38:28 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 10:38:28 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:28 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 10:38:28 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 10:38:28 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:38:28 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:38:28 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 10:38:28 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 10:38:28 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 10:38:28 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:28 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 10:38:28 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 10:38:28 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:38:28 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:38:28 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 10:38:28 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 10:38:28 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 10:38:28 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:28 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 10:38:28 DEBUG SClient4WPS:664 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-04 10:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-04 10:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 10:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 10:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:38:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-04 10:38:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-04 10:38:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-04 10:38:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-04 10:38:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 10:38:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-04 10:38:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 10:38:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-04 10:38:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 210 msc 0 sec -2016-05-04 10:38:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-04 10:38:41 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:38:41 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:38:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:38:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:38:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:38:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:41 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:38:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:41 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:38:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:38:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:38:41 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:38:41 DEBUG ServiceEngine:306 - get() - start -2016-05-04 10:38:41 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:38:41 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:38:41 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-04 10:38:41 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-04 10:38:41 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:38:41 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:38:41 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 10:38:41 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:38:41 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 10:38:41 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:38:41 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:38:41 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:38:41 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:38:41 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:38:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:38:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:38:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:38:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:38:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:38:41 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:38:41 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:38:41 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:38:41 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:41 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:41 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:38:41 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5cd83f4e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@33bc26ac, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@58f00bd, socketFactory=javax.net.DefaultSocketFactory@6f797b24, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:38:41 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:38:41 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:38:41 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:38:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 63 msc 0 sec -2016-05-04 10:38:41 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:38:41 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 10:38:42 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:273188}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1388914, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:42 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:38:42 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:42 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:42 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2154732}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:42 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1542639, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:42 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:43 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:43 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:38:43 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:38:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:43 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:43 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:38:43 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:38:43 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:38:43 DEBUG ServiceEngine:306 - get() - start -2016-05-04 10:38:43 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:38:43 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:38:43 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-04 10:38:43 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 10:38:43 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:38:43 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:38:43 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 10:38:43 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:38:43 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:38:43 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:38:43 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:38:43 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:38:43 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:38:43 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:38:43 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:38:43 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:43 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:43 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:43 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5cd83f4e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@33bc26ac, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@58f00bd, socketFactory=javax.net.DefaultSocketFactory@6f797b24, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:38:43 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:38:43 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:43 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:273189}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1317356, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:43 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:38:43 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:43 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:43 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:2154734}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=915902, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 10:38:43 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-04 10:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 10:38:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:38:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:38:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:38:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:43 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:38:43 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:38:43 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:38:43 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:38:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 46 msc 0 sec -2016-05-04 10:38:43 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:38:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:38:43 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:38:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:38:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 10:38:43 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:43 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:43 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:43 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:44 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:38:44 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:38:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:44 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:38:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:38:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:44 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 10:38:44 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-04 10:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 10:38:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:44 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:38:44 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:38:44 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:38:44 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 10:38:44 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1568539}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1052029, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-04 10:38:44 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1568538}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2140500, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 10:38:44 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-04 10:38:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:38:44 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-04 10:38:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:44 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:38:44 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:1885414}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1272567, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:44 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:38:44 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1885413}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=3149447, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:44 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:44 DEBUG ServiceEngine:193 - get() - start -2016-05-04 10:38:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:38:44 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:38:44 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 10:38:44 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:38:45 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:38:45 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:38:45 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-04 10:38:45 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:38:45 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:38:45 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:38:45 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:38:45 DEBUG Operation:173 - get(String) - start -2016-05-04 10:38:45 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:38:45 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:38:45 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:38:45 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:38:45 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:45 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:45 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5cd83f4e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@33bc26ac, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@58f00bd, socketFactory=javax.net.DefaultSocketFactory@6f797b24, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:38:45 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:38:45 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:1885415}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:273191}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1885415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1258463, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:45 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:38:45 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:45 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:2154736}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=849082, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1885415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1885415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1885416}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885416}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1885417}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885416}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1176379, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:45 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885416}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1885415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:9, serverValue:1885415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885416}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885416}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1885416}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:9, serverValue:1885415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:1568540}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1278049, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1885418}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:38:45 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG query:56 - Query completed -2016-05-04 10:38:45 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 10:38:45 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 10:38:45 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-04 10:38:45 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG update:56 - Update completed -2016-05-04 10:38:45 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1885418}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG query:56 - Query completed -2016-05-04 10:38:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:38:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:38:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:38:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:38:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:38:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-04 10:38:45 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-04 10:38:45 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-04 10:38:45 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-04 10:38:45 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:38:45 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:38:45 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 10:38:45 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:38:45 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-04 10:38:45 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:38:45 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-04 10:38:45 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-04 10:38:45 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:38:45 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:38:45 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:38:45 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:38:45 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:38:45 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:38:45 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:38:45 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:45 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:45 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5cd83f4e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@33bc26ac, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@58f00bd, socketFactory=javax.net.DefaultSocketFactory@6f797b24, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:38:45 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:38:45 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:273192}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1006693, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:45 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1885419}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:45 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 10:38:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1120220, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:45 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2154737}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=812140, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1568541}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1197786, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-04 10:38:45 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1885420}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885420}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885420}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885420}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:38:45 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885420}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885420}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG command:56 - Command execution completed -2016-05-04 10:38:45 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:38:45 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1885420}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG query:56 - Query completed -2016-05-04 10:38:45 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2154737} -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1568541} -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:273192} -2016-05-04 10:38:45 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1885420}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1885420} -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1885419} -2016-05-04 10:38:45 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:38:45 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:38:45 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:38:45 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:38:45 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:38:45 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-04 10:38:45 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:38:45 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:38:45 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:38:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:38:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 10:38:45 DEBUG query:56 - Query completed -2016-05-04 10:38:45 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:2154734} -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:273189} -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1568539} -2016-05-04 10:38:45 INFO connection:71 - Closed connection [connectionId{localValue:9, serverValue:1885415}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:1885415} -2016-05-04 10:38:45 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:38:45 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:1885414} -2016-05-04 10:38:45 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:38:45 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:38:45 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 10:38:46 DEBUG query:56 - Query completed -2016-05-04 10:38:46 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-04 10:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2154732} -2016-05-04 10:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1568538} -2016-05-04 10:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:273188} -2016-05-04 10:38:46 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1885416}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1885416} -2016-05-04 10:38:46 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:38:46 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:38:46 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1885413} -2016-05-04 10:38:46 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:38:46 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-04 10:38:50 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:2154736} -2016-05-04 10:38:50 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1885418}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:38:50 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:273191} -2016-05-04 10:38:50 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1885418} -2016-05-04 10:38:50 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:1568540} -2016-05-04 10:38:50 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1885417} -2016-05-04 10:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:38:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:38:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:38:55 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-04 10:38:55 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 10:38:55 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 10:38:55 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 10:38:55 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 10:38:55 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 10:38:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 10:38:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 10:38:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:55 DEBUG SClient4WPS:692 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 10:38:55 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 10:38:55 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:38:55 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:38:55 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 10:38:55 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 10:38:55 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 10:38:55 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 10:38:55 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 10:38:55 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 10:38:55 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 10:38:55 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 10:38:55 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 10:38:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 10:38:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 10:38:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:55 DEBUG SClient4WPS:692 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 10:38:55 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 10:38:55 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:38:55 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:38:55 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 10:38:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 10:38:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 10:38:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:55 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 10:38:55 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 10:38:55 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:38:55 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:38:55 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 10:38:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 10:38:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 10:38:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:55 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 10:38:55 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 10:38:55 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:38:55 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:38:55 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 10:38:55 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 10:38:55 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 10:38:55 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:38:55 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 10:38:55 DEBUG SClient4WPS:700 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:38:55 DEBUG SClient4WPS:700 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-04 10:38:55 DEBUG SClient4WPS:700 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-05-04 10:38:55 DEBUG SClient4WPS:700 - UserInputs= key:epsilon, value=10 -2016-05-04 10:38:55 DEBUG SClient4WPS:700 - UserInputs= key:min_points, value=1 -2016-05-04 10:38:55 DEBUG SClient4WPS:761 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:38:55 DEBUG SClient4WPS:744 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-04 10:38:55 DEBUG SClient4WPS:744 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-05-04 10:38:55 DEBUG SClient4WPS:744 - Configuring Literal: epsilon to: 10 -2016-05-04 10:38:55 DEBUG SClient4WPS:744 - Configuring Literal: min_points to: 1 -2016-05-04 10:38:55 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:39:00 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-04 10:39:00 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-04 10:39:01 DEBUG SClient4WPS:415 - ExecuteProcessAsync: Invalid Response from service: Response isn't instance of ExecuteResponseDocumentImpl, class is class net.opengis.ows.x11.impl.ExceptionReportDocumentImpl -2016-05-04 10:39:01 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:39:01 DEBUG SClient4WPS:787 - WPSProcess->Returning Exception to the SM:Process error in WPS Execution -2016-05-04 10:39:01 ERROR DataMinerManagerServiceImpl:153 - Error in start computation: Process error in WPS Execution -2016-05-04 10:39:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:39:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:40:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:40:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:40:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:40:57 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:41:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:41:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:42:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 10:42:47 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-04 10:43:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:43:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:44:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:44:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:45:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:45:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:46:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:46:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:47:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:48:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:48:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:49:11 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 10:49:11 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 10:49:11 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-04 10:49:11 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:49:11 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:49:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:49:11 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:49:11 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3d2a5d6e -2016-05-04 10:49:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:49:11 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:49:11 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:49:11 DEBUG TemplateModel:83 - 2016-05-04 10:49:11, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:49:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:49:11 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 10:49:13 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 10:49:13 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 10:49:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:49:13 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 10:49:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:49:13 INFO ASLSession:352 - Logging the entrance -2016-05-04 10:49:13 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 10:49:13 DEBUG TemplateModel:83 - 2016-05-04 10:49:13, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 10:49:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:49:13 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:49:13 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 118 ms -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 10:49:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 10:49:13 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 10:49:13 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:49:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 10:49:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@583c182d -2016-05-04 10:49:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@34c0e7f9 -2016-05-04 10:49:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5b9db174 -2016-05-04 10:49:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@790f7097 -2016-05-04 10:49:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 99 ms -2016-05-04 10:49:14 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 10:49:14 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 10:49:14 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 10:49:14 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 10:49:14 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 10:49:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:49:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:49:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 10:49:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-04 10:49:14 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 10:49:14 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:49:14 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 10:49:14 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:49:14 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:49:14 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:49:14 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:49:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:49:14 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:49:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:49:14 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 10:49:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:14 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 10:49:14 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 10:49:14 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 10:49:14 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 10:49:14 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 10:49:14 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 10:49:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 10:49:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:49:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 10:49:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 75 ms -2016-05-04 10:49:14 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 10:49:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:49:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:14 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 10:49:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:14 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 10:49:15 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:49:15 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:49:15 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 10:49:15 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 10:49:15 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 10:49:15 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:15 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:49:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 10:49:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:49:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 10:49:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:49:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 10:49:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 10:49:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 10:49:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:49:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:16 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 10:49:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:49:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:49:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:49:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:16 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 10:49:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:49:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:49:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:17 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 10:49:17 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 10:49:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:17 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:49:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 10:49:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-04 10:49:17 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-04 10:49:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:49:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 10:49:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 20 ms -2016-05-04 10:49:17 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 10:49:17 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 10:49:17 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 10:49:17 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-04 10:49:17 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-04 10:49:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 10:49:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 10:49:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 23 ms -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-04 10:49:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:17 INFO WorkspaceExplorerServiceImpl:188 - end time - 386 msc 0 sec -2016-05-04 10:49:17 INFO WorkspaceExplorerServiceImpl:188 - end time - 227 msc 0 sec -2016-05-04 10:49:17 INFO WorkspaceExplorerServiceImpl:188 - end time - 393 msc 0 sec -2016-05-04 10:49:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:49:19 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 10:49:23 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 10:49:23 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 10:49:23 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 10:49:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:49:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:49:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:49:23 INFO SClient4WPS:643 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-04 10:49:23 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:49:23 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:49:24 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-04 10:49:24 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-04 10:49:24 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-04 10:49:24 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-04 10:49:24 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-04 10:49:24 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-04 10:49:24 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-04 10:49:24 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-04 10:49:24 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-04 10:49:24 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-04 10:49:24 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:49:24 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 10:49:24 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 10:49:24 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 10:49:24 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 10:49:24 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 10:49:24 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 10:49:24 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 10:49:24 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:24 DEBUG SClient4WPS:660 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 10:49:24 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 10:49:24 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:49:24 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:49:24 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 10:49:24 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 10:49:24 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 10:49:24 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 10:49:24 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 10:49:24 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 10:49:24 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 10:49:24 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 10:49:24 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 10:49:24 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 10:49:24 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 10:49:24 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:24 DEBUG SClient4WPS:660 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 10:49:24 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 10:49:24 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:49:24 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:49:24 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 10:49:24 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 10:49:24 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 10:49:24 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:24 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 10:49:24 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 10:49:24 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:49:24 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:49:24 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 10:49:24 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 10:49:24 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 10:49:24 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:24 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 10:49:24 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 10:49:24 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:49:24 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:49:24 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 10:49:24 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 10:49:24 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 10:49:24 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:24 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 10:49:24 DEBUG SClient4WPS:664 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:49:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:49:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:49:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:24 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-04 10:49:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:49:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:49:24 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:49:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:49:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:49:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:49:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:49:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 10:49:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 10:49:24 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-04 10:49:24 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-04 10:49:24 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-04 10:49:24 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-04 10:49:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 10:49:24 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-04 10:49:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 10:49:24 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-04 10:49:24 INFO WorkspaceExplorerServiceImpl:142 - end time - 225 msc 0 sec -2016-05-04 10:49:24 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-04 10:49:31 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:49:31 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:49:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:49:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:49:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:49:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:31 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:49:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:49:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:49:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:49:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:49:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:49:31 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:49:31 DEBUG ServiceEngine:306 - get() - start -2016-05-04 10:49:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:49:31 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:49:31 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-04 10:49:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-04 10:49:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:49:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:49:31 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 10:49:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:49:31 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 10:49:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:49:31 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:49:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:49:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:49:31 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:49:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:49:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:49:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:49:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:49:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:49:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c0054fd3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@564fd98d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1453e440, socketFactory=javax.net.DefaultSocketFactory@74dce265, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:49:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:49:31 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:49:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:49:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:49:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:49:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:49:31 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:49:31 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 10:49:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:49:31 INFO WorkspaceExplorerServiceImpl:188 - end time - 69 msc 0 sec -2016-05-04 10:49:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:49:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 10:49:31 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:273336}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1885577}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1366490, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1562388, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:49:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:31 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1885578}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885578}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG command:56 - Command execution completed -2016-05-04 10:49:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885578}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG command:56 - Command execution completed -2016-05-04 10:49:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885578}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG command:56 - Command execution completed -2016-05-04 10:49:31 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:49:31 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2154868}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=931237, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885578}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG command:56 - Command execution completed -2016-05-04 10:49:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885578}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG command:56 - Command execution completed -2016-05-04 10:49:31 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1568674}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1381822, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:31 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1885578}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-04 10:49:32 DEBUG query:56 - Query completed -2016-05-04 10:49:32 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-04 10:49:32 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2154868} -2016-05-04 10:49:32 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:273336} -2016-05-04 10:49:32 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1885578}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:49:32 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1568674} -2016-05-04 10:49:32 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1885578} -2016-05-04 10:49:32 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1885577} -2016-05-04 10:49:32 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:49:32 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:49:32 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 10:49:32 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-04 10:49:33 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:49:33 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:49:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:49:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:33 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:33 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:49:33 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:49:33 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:49:33 DEBUG ServiceEngine:306 - get() - start -2016-05-04 10:49:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:49:33 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:49:33 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-04 10:49:33 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 10:49:33 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:49:33 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:49:33 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 10:49:33 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:49:33 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:49:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:49:33 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:49:33 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:49:33 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:49:33 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:49:33 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:49:33 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:33 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:33 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:33 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c0054fd3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@564fd98d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1453e440, socketFactory=javax.net.DefaultSocketFactory@74dce265, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:49:33 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:49:33 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:49:33 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1885579}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1641948, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:33 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:49:33 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:33 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:33 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:33 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2154869}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1754878, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:33 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:273337}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1667088, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:49:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 10:49:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:33 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1568675}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:49:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1371145, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-04 10:49:33 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:49:33 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 10:49:33 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1885580}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885580}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG command:56 - Command execution completed -2016-05-04 10:49:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885580}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG command:56 - Command execution completed -2016-05-04 10:49:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885580}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG command:56 - Command execution completed -2016-05-04 10:49:33 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:49:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885580}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG command:56 - Command execution completed -2016-05-04 10:49:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885580}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 DEBUG command:56 - Command execution completed -2016-05-04 10:49:33 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1885580}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:33 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:49:33 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 10:49:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 43 msc 0 sec -2016-05-04 10:49:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 10:49:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:49:33 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 10:49:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 10:49:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 10:49:33 DEBUG query:56 - Query completed -2016-05-04 10:49:33 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-04 10:49:33 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2154869} -2016-05-04 10:49:33 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1568675} -2016-05-04 10:49:33 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:273337} -2016-05-04 10:49:33 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1885580}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:49:33 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1885580} -2016-05-04 10:49:33 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:49:33 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:49:33 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1885579} -2016-05-04 10:49:33 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 10:49:33 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 10:49:33 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:49:33 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:33 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:49:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:49:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:33 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:49:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:49:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:34 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:49:34 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:49:34 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:49:34 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 10:49:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:49:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:49:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:49:34 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-04 10:49:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:34 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:49:34 DEBUG ServiceEngine:193 - get() - start -2016-05-04 10:49:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:49:34 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:49:34 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 10:49:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:49:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:49:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 10:49:34 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-04 10:49:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:49:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:49:34 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:49:34 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:49:34 DEBUG Operation:173 - get(String) - start -2016-05-04 10:49:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:49:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:49:34 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:49:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:49:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c0054fd3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@564fd98d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1453e440, socketFactory=javax.net.DefaultSocketFactory@74dce265, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:49:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:49:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:49:34 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1885581}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1284975, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:49:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:34 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:273340}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1043655, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:34 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2154870}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=966653, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:34 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1885582}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG command:56 - Command execution completed -2016-05-04 10:49:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1568676}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG command:56 - Command execution completed -2016-05-04 10:49:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1899028, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-04 10:49:34 DEBUG command:56 - Command execution completed -2016-05-04 10:49:34 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 10:49:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG command:56 - Command execution completed -2016-05-04 10:49:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG command:56 - Command execution completed -2016-05-04 10:49:34 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:49:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG command:56 - Command execution completed -2016-05-04 10:49:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG command:56 - Command execution completed -2016-05-04 10:49:34 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:49:34 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:34 DEBUG query:56 - Query completed -2016-05-04 10:49:34 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 10:49:34 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 10:49:35 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-04 10:49:35 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG update:56 - Update completed -2016-05-04 10:49:35 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1885582}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG query:56 - Query completed -2016-05-04 10:49:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 10:49:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 10:49:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 10:49:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 10:49:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 10:49:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 10:49:35 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 10:49:35 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-04 10:49:35 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-04 10:49:35 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-04 10:49:35 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:49:35 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:49:35 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 10:49:35 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 10:49:35 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-04 10:49:35 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 10:49:35 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-04 10:49:35 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-04 10:49:35 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 10:49:35 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 10:49:35 DEBUG BucketCoding:42 - coding name done -2016-05-04 10:49:35 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 10:49:35 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 10:49:35 DEBUG MongoIO:77 - open mongo connection -2016-05-04 10:49:35 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 10:49:35 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:35 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:35 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:35 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c0054fd3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@564fd98d, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1453e440, socketFactory=javax.net.DefaultSocketFactory@74dce265, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 10:49:35 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 10:49:35 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 10:49:35 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:273341}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1395566, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:35 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 10:49:35 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:35 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 10:49:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:35 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1885583}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1088712, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:35 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:35 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2154871}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1702045, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 10:49:35 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1568677}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2546422, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 10:49:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-04 10:49:35 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1885584}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885584}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG command:56 - Command execution completed -2016-05-04 10:49:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885584}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG command:56 - Command execution completed -2016-05-04 10:49:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885584}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG command:56 - Command execution completed -2016-05-04 10:49:35 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:49:35 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:49:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885584}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG command:56 - Command execution completed -2016-05-04 10:49:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885584}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG command:56 - Command execution completed -2016-05-04 10:49:35 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:49:35 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1885584}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 10:49:35 DEBUG query:56 - Query completed -2016-05-04 10:49:35 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 10:49:35 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2154871} -2016-05-04 10:49:35 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:273341} -2016-05-04 10:49:35 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1568677} -2016-05-04 10:49:35 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1885584}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:49:35 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1885584} -2016-05-04 10:49:35 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1885583} -2016-05-04 10:49:35 INFO MongoIO:508 - Mongo has been closed -2016-05-04 10:49:35 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 10:49:35 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:49:35 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:49:35 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:49:35 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-04 10:49:35 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 10:49:35 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:49:35 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:49:41 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2154870} -2016-05-04 10:49:41 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1885582}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 10:49:41 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1568676} -2016-05-04 10:49:41 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:273340} -2016-05-04 10:49:41 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1885582} -2016-05-04 10:49:41 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1885581} -2016-05-04 10:49:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:49:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:49:54 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 10:49:54 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-04 10:49:54 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 10:49:54 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 10:49:54 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 10:49:54 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 10:49:54 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 10:49:54 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 10:49:54 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 10:49:54 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:54 DEBUG SClient4WPS:692 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 10:49:54 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 10:49:54 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:49:54 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:49:54 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 10:49:54 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 10:49:54 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 10:49:54 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 10:49:54 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 10:49:54 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 10:49:54 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 10:49:54 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 10:49:54 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 10:49:54 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 10:49:54 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 10:49:54 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:54 DEBUG SClient4WPS:692 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 10:49:54 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 10:49:54 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:49:54 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 10:49:54 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 10:49:54 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 10:49:54 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 10:49:54 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:54 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 10:49:54 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 10:49:54 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:49:54 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:49:54 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 10:49:54 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 10:49:54 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 10:49:54 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:54 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 10:49:54 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 10:49:54 DEBUG WPS2SM:92 - WPS type: -2016-05-04 10:49:54 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 10:49:54 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 10:49:54 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 10:49:54 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 10:49:54 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 10:49:54 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 10:49:54 DEBUG SClient4WPS:700 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:49:54 DEBUG SClient4WPS:700 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-04 10:49:54 DEBUG SClient4WPS:700 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-05-04 10:49:54 DEBUG SClient4WPS:700 - UserInputs= key:epsilon, value=10 -2016-05-04 10:49:54 DEBUG SClient4WPS:700 - UserInputs= key:min_points, value=1 -2016-05-04 10:49:54 DEBUG SClient4WPS:761 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 10:49:54 DEBUG SClient4WPS:744 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-04 10:49:54 DEBUG SClient4WPS:744 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-05-04 10:49:54 DEBUG SClient4WPS:744 - Configuring Literal: epsilon to: 10 -2016-05-04 10:49:54 DEBUG SClient4WPS:744 - Configuring Literal: min_points to: 1 -2016-05-04 10:49:54 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 10:49:57 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-04 10:49:57 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-04 10:49:58 DEBUG SClient4WPS:415 - ExecuteProcessAsync: Invalid Response from service: Response isn't instance of ExecuteResponseDocumentImpl, class is class net.opengis.ows.x11.impl.ExceptionReportDocumentImpl -2016-05-04 10:49:58 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 10:49:58 DEBUG SClient4WPS:787 - WPSProcess->Returning Exception to the SM:Process error in WPS Execution -2016-05-04 10:49:58 ERROR DataMinerManagerServiceImpl:153 - Error in start computation: Process error in WPS Execution -2016-05-04 10:50:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 10:50:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 10:51:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 10:51:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 10:51:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:51:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:52:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:52:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:53:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:53:46 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:54:41 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:55:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 10:55:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 10:56:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:56:31 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 10:57:26 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 10:58:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:58:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 10:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 10:59:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:00:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:00:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:01:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:01:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:02:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:02:01 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:02:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:02:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:03:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:03:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:04:28 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 11:04:28 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 11:04:29 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-04 11:04:29 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 11:04:29 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 11:04:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:04:29 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 11:04:29 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@12799a08 -2016-05-04 11:04:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:29 INFO ASLSession:352 - Logging the entrance -2016-05-04 11:04:29 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 11:04:29 DEBUG TemplateModel:83 - 2016-05-04 11:04:29, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 11:04:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:04:29 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 11:04:31 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 11:04:31 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 11:04:31 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:04:31 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 11:04:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:31 INFO ASLSession:352 - Logging the entrance -2016-05-04 11:04:31 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 11:04:31 DEBUG TemplateModel:83 - 2016-05-04 11:04:31, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 11:04:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:04:31 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 11:04:31 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 118 ms -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 11:04:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 11:04:31 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 11:04:31 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:04:31 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 11:04:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@347b17d0 -2016-05-04 11:04:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4482985 -2016-05-04 11:04:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1541ee2b -2016-05-04 11:04:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@75af274b -2016-05-04 11:04:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 105 ms -2016-05-04 11:04:31 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 11:04:31 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 11:04:31 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 11:04:31 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 11:04:31 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 11:04:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:31 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:04:31 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 11:04:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-04 11:04:31 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 11:04:31 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:04:31 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 11:04:31 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:04:32 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 11:04:32 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 11:04:32 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 11:04:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:04:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:04:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:04:32 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 11:04:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:32 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 11:04:32 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 11:04:32 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 11:04:32 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 11:04:32 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 11:04:32 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 11:04:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 11:04:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:04:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 11:04:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 74 ms -2016-05-04 11:04:32 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 11:04:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:04:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:32 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 11:04:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:32 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 11:04:32 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 11:04:32 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 11:04:32 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 11:04:33 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 11:04:33 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 11:04:33 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:33 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 11:04:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 11:04:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:33 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:04:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 11:04:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:33 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:04:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 11:04:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:33 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:04:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 11:04:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:34 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 11:04:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:04:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:04:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:34 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:04:34 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 11:04:34 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 11:04:34 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 11:04:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:04:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:04:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:34 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:04:34 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 11:04:34 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 11:04:34 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 29 ms -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 11:04:34 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 11:04:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:34 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:04:34 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 11:04:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:34 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 24 ms -2016-05-04 11:04:34 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 11:04:34 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 11:04:34 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 11:04:34 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 11:04:34 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 11:04:34 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 11:04:34 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:04:34 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 11:04:34 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 11:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:34 INFO WorkspaceExplorerServiceImpl:188 - end time - 407 msc 0 sec -2016-05-04 11:04:34 INFO WorkspaceExplorerServiceImpl:188 - end time - 168 msc 0 sec -2016-05-04 11:04:34 INFO WorkspaceExplorerServiceImpl:188 - end time - 342 msc 0 sec -2016-05-04 11:04:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 11:04:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 11:04:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 11:04:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:04:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:04:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:04:41 INFO SClient4WPS:643 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-04 11:04:41 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:04:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:04:42 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-04 11:04:42 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-04 11:04:42 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-04 11:04:42 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-04 11:04:42 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-04 11:04:42 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-04 11:04:42 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-04 11:04:42 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-04 11:04:42 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-04 11:04:42 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-04 11:04:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:04:42 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 11:04:42 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 11:04:42 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 11:04:42 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 11:04:42 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 11:04:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 11:04:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 11:04:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:04:42 DEBUG SClient4WPS:660 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 11:04:42 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 11:04:42 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:04:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:04:42 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 11:04:42 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 11:04:42 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 11:04:42 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 11:04:42 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 11:04:42 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 11:04:42 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 11:04:42 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 11:04:42 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 11:04:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 11:04:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 11:04:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:04:42 DEBUG SClient4WPS:660 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 11:04:42 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 11:04:42 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:04:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:04:42 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 11:04:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 11:04:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 11:04:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:04:42 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 11:04:42 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 11:04:42 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:04:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:04:42 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 11:04:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 11:04:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 11:04:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:04:42 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 11:04:42 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 11:04:42 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:04:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:04:42 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 11:04:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 11:04:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 11:04:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:04:42 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 11:04:42 DEBUG SClient4WPS:664 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-04 11:04:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:04:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:04:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:04:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:04:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:04:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:04:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:04:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:04:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:04:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-04 11:04:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-04 11:04:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-04 11:04:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-04 11:04:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 11:04:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-04 11:04:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 11:04:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-04 11:04:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-04 11:04:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-04 11:04:50 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:04:50 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:04:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:04:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:04:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:04:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:50 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:04:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:04:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:04:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:04:50 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 11:04:50 DEBUG ServiceEngine:306 - get() - start -2016-05-04 11:04:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:04:50 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:04:50 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-04 11:04:50 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-04 11:04:50 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 11:04:50 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 11:04:50 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 11:04:50 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 11:04:50 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 11:04:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:04:50 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:04:50 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 11:04:50 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 11:04:50 DEBUG MongoIO:77 - open mongo connection -2016-05-04 11:04:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:04:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:04:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:04:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:04:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:04:50 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 11:04:50 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:04:50 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 11:04:50 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 11:04:50 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:50 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:50 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e2238239, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@457ebdd, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@283dfc65, socketFactory=javax.net.DefaultSocketFactory@7d855f86, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 11:04:50 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 11:04:50 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 11:04:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 51 msc 0 sec -2016-05-04 11:04:50 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 11:04:50 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 11:04:50 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 11:04:51 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1885786}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:273531}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1555059, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1644856, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 11:04:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:51 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1885787}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885787}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG command:56 - Command execution completed -2016-05-04 11:04:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885787}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG command:56 - Command execution completed -2016-05-04 11:04:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885787}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG command:56 - Command execution completed -2016-05-04 11:04:51 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 11:04:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885787}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG command:56 - Command execution completed -2016-05-04 11:04:51 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1568854}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885787}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG command:56 - Command execution completed -2016-05-04 11:04:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1771684, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-04 11:04:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1885787}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2155050}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1191478, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-04 11:04:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-04 11:04:51 DEBUG query:56 - Query completed -2016-05-04 11:04:51 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-04 11:04:51 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2155050} -2016-05-04 11:04:51 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1568854} -2016-05-04 11:04:51 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:273531} -2016-05-04 11:04:51 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1885787}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 11:04:51 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1885787} -2016-05-04 11:04:51 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1885786} -2016-05-04 11:04:51 INFO MongoIO:508 - Mongo has been closed -2016-05-04 11:04:51 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 11:04:51 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 11:04:51 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-04 11:04:52 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:04:52 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:04:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:04:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:52 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:04:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:04:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:52 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:04:52 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:04:52 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 11:04:52 DEBUG ServiceEngine:306 - get() - start -2016-05-04 11:04:52 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:04:52 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:04:52 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-04 11:04:52 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 11:04:52 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 11:04:52 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 11:04:52 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 11:04:52 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 11:04:52 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 11:04:52 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:04:52 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:04:52 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 11:04:52 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 11:04:52 DEBUG MongoIO:77 - open mongo connection -2016-05-04 11:04:52 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 11:04:52 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:52 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:52 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:52 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e2238239, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@457ebdd, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@283dfc65, socketFactory=javax.net.DefaultSocketFactory@7d855f86, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 11:04:52 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 11:04:52 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 11:04:52 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1885788}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:273532}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1478705, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:52 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 11:04:52 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:52 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1408896, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:52 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:52 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2155051}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=890915, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:04:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:04:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:04:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:04:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:04:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:04:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:52 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1568855}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2117163, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-04 11:04:52 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1885789}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885789}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:04:52 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:04:52 DEBUG command:56 - Command execution completed -2016-05-04 11:04:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885789}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG command:56 - Command execution completed -2016-05-04 11:04:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885789}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG command:56 - Command execution completed -2016-05-04 11:04:52 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 11:04:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885789}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG command:56 - Command execution completed -2016-05-04 11:04:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885789}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 DEBUG command:56 - Command execution completed -2016-05-04 11:04:52 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1885789}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:52 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 11:04:52 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 11:04:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 39 msc 0 sec -2016-05-04 11:04:52 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:04:52 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 11:04:52 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 11:04:52 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 11:04:52 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 11:04:53 DEBUG query:56 - Query completed -2016-05-04 11:04:53 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-04 11:04:53 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2155051} -2016-05-04 11:04:53 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:273532} -2016-05-04 11:04:53 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1885789}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 11:04:53 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1885789} -2016-05-04 11:04:53 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1568855} -2016-05-04 11:04:53 INFO MongoIO:508 - Mongo has been closed -2016-05-04 11:04:53 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 11:04:53 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 11:04:53 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1885788} -2016-05-04 11:04:53 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 11:04:53 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:04:53 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:04:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:04:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:04:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:53 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:04:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:04:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:04:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:04:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:53 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:04:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:04:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:04:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:04:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:53 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:04:53 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:04:53 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:04:53 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 11:04:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:04:54 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:04:54 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:04:54 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-04 11:04:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:54 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:04:54 DEBUG ServiceEngine:193 - get() - start -2016-05-04 11:04:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:04:54 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:04:54 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 11:04:54 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 11:04:54 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 11:04:54 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 11:04:54 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-04 11:04:54 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 11:04:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:04:54 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:04:54 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:04:54 DEBUG Operation:173 - get(String) - start -2016-05-04 11:04:54 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 11:04:54 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 11:04:54 DEBUG MongoIO:77 - open mongo connection -2016-05-04 11:04:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 11:04:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e2238239, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@457ebdd, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@283dfc65, socketFactory=javax.net.DefaultSocketFactory@7d855f86, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 11:04:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 11:04:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:273533}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=6193219, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 11:04:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2155052}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1271002, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1885792}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1673006, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1568856}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2429672, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1885793}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 11:04:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:04:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:04:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG query:56 - Query completed -2016-05-04 11:04:54 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 11:04:54 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 11:04:54 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-04 11:04:54 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG update:56 - Update completed -2016-05-04 11:04:54 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1885793}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG query:56 - Query completed -2016-05-04 11:04:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:04:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:04:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:04:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:04:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:04:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:04:54 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:04:54 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-04 11:04:54 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-04 11:04:54 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-04 11:04:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:04:54 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:04:54 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 11:04:54 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 11:04:54 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-04 11:04:54 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 11:04:54 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-04 11:04:54 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-04 11:04:54 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 11:04:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:04:54 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:04:54 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 11:04:54 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 11:04:54 DEBUG MongoIO:77 - open mongo connection -2016-05-04 11:04:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 11:04:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e2238239, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@457ebdd, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@283dfc65, socketFactory=javax.net.DefaultSocketFactory@7d855f86, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 11:04:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 11:04:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:273534}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1885794}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1674064, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 11:04:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1346498, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2155053}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=840311, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1568857}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1283571, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 11:04:54 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1885795}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885795}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885795}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885795}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:04:54 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:04:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885795}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885795}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG command:56 - Command execution completed -2016-05-04 11:04:54 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:04:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1885795}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG query:56 - Query completed -2016-05-04 11:04:54 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 11:04:54 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2155053} -2016-05-04 11:04:54 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:273534} -2016-05-04 11:04:54 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1568857} -2016-05-04 11:04:54 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1885795}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 11:04:54 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1885795} -2016-05-04 11:04:54 INFO MongoIO:508 - Mongo has been closed -2016-05-04 11:04:54 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:04:54 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1885794} -2016-05-04 11:04:54 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 11:04:54 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 11:04:54 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 11:04:54 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-04 11:04:54 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 11:04:54 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 11:04:54 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-04 11:04:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:04:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-04 11:04:56 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2155052} -2016-05-04 11:04:56 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1885793}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 11:04:56 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1885793} -2016-05-04 11:04:56 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:273533} -2016-05-04 11:04:56 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1568856} -2016-05-04 11:04:56 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1885792} -2016-05-04 11:05:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:05:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:05:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:05:12 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-04 11:05:12 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 11:05:12 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 11:05:12 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 11:05:12 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 11:05:12 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 11:05:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 11:05:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 11:05:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:05:12 DEBUG SClient4WPS:692 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 11:05:12 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 11:05:12 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:05:12 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:05:12 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 11:05:12 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 11:05:12 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 11:05:12 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 11:05:12 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 11:05:12 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 11:05:12 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 11:05:12 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 11:05:12 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 11:05:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 11:05:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 11:05:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:05:12 DEBUG SClient4WPS:692 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 11:05:12 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 11:05:12 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:05:12 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:05:12 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 11:05:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 11:05:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 11:05:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:05:12 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 11:05:12 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 11:05:12 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:05:12 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:05:12 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 11:05:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 11:05:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 11:05:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:05:12 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 11:05:12 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 11:05:12 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:05:12 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:05:12 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 11:05:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 11:05:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 11:05:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:05:12 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 11:05:12 DEBUG SClient4WPS:700 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 11:05:12 DEBUG SClient4WPS:700 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymax -2016-05-04 11:05:12 DEBUG SClient4WPS:700 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-05-04 11:05:12 DEBUG SClient4WPS:700 - UserInputs= key:epsilon, value=10 -2016-05-04 11:05:12 DEBUG SClient4WPS:700 - UserInputs= key:min_points, value=1 -2016-05-04 11:05:12 DEBUG SClient4WPS:761 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 11:05:12 DEBUG SClient4WPS:744 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymax -2016-05-04 11:05:12 DEBUG SClient4WPS:744 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-05-04 11:05:12 DEBUG SClient4WPS:744 - Configuring Literal: epsilon to: 10 -2016-05-04 11:05:12 DEBUG SClient4WPS:744 - Configuring Literal: min_points to: 1 -2016-05-04 11:05:12 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:05:14 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymax - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-04 11:05:14 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-04 11:05:15 DEBUG SClient4WPS:415 - ExecuteProcessAsync: Invalid Response from service: Response isn't instance of ExecuteResponseDocumentImpl, class is class net.opengis.ows.x11.impl.ExceptionReportDocumentImpl -2016-05-04 11:05:15 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:05:15 DEBUG SClient4WPS:787 - WPSProcess->Returning Exception to the SM:Process error in WPS Execution -2016-05-04 11:05:15 ERROR DataMinerManagerServiceImpl:153 - Error in start computation: Process error in WPS Execution -2016-05-04 11:05:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:05:24 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:06:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:06:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:07:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:07:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:08:09 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:09:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:09:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:09:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:09:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:11:05 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 11:11:05 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 11:11:05 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-04 11:11:05 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 11:11:05 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 11:11:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:11:05 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 11:11:05 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6f8131c7 -2016-05-04 11:11:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:11:05 INFO ASLSession:352 - Logging the entrance -2016-05-04 11:11:05 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 11:11:05 DEBUG TemplateModel:83 - 2016-05-04 11:11:05, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 11:11:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:11:05 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 11:11:07 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 11:11:07 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 11:11:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:11:07 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 11:11:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:11:07 INFO ASLSession:352 - Logging the entrance -2016-05-04 11:11:07 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 11:11:07 DEBUG TemplateModel:83 - 2016-05-04 11:11:07, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 11:11:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:11:07 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 11:11:07 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 114 ms -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 11:11:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 11:11:07 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 11:11:07 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:11:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 11:11:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@44a94cc -2016-05-04 11:11:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@1f74c765 -2016-05-04 11:11:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@16586d6f -2016-05-04 11:11:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2588052d -2016-05-04 11:11:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 105 ms -2016-05-04 11:11:08 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 11:11:08 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 11:11:08 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 11:11:08 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 11:11:08 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 11:11:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:11:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:11:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 11:11:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-04 11:11:08 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 11:11:08 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:08 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 11:11:08 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:11:08 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 11:11:08 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 11:11:08 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 11:11:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:11:08 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:11:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:11:08 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 11:11:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:08 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 11:11:08 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 11:11:08 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 11:11:08 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 11:11:08 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 11:11:08 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 11:11:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 11:11:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:11:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 11:11:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 74 ms -2016-05-04 11:11:08 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 11:11:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:11:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:08 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 11:11:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:08 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 11:11:09 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 11:11:09 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 11:11:09 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 11:11:09 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 11:11:09 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 11:11:09 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:09 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 11:11:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 11:11:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:11:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 11:11:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:11:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 11:11:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:11:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 11:11:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:09 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:09 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:10 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 11:11:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 11:11:10 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 11:11:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:10 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 11:11:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:10 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 11:11:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:11:10 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:11:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 11:11:10 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 11:11:10 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 11:11:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 11:11:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:11:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 11:11:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-04 11:11:10 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 11:11:10 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 11:11:10 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 11:11:10 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 11:11:10 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 11:11:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:11:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 11:11:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 11:11:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 322 msc 0 sec -2016-05-04 11:11:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 254 msc 0 sec -2016-05-04 11:11:11 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 11:11:11 INFO WorkspaceExplorerServiceImpl:188 - end time - 1149 msc 1 sec -2016-05-04 11:11:16 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 11:11:16 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 11:11:16 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 11:11:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:11:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:11:16 INFO SClient4WPS:643 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-04 11:11:16 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:16 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:11:18 ERROR StatWPSClientSession:411 - Error while parsing input. -2016-05-04 11:11:18 DEBUG SClient4WPS:278 - Retrying with WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:11:18 INFO StatWPSClientSession:86 - Service already registered: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:18 DEBUG SClient4WPS:278 - Retrying with WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:11:18 INFO StatWPSClientSession:86 - Service already registered: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:18 DEBUG SClient4WPS:278 - Retrying with WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:11:18 INFO StatWPSClientSession:86 - Service already registered: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:18 DEBUG SClient4WPS:278 - Retrying with WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:18 ERROR SClient4WPS:649 - GetParameters: null -2016-05-04 11:11:18 ERROR SClient4WPS:669 - -2016-05-04 11:11:18 ERROR DataMinerManagerServiceImpl:135 - Error retrieving parameters: null -2016-05-04 11:11:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:11:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:11:26 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:11:26 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 11:11:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:11:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:11:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:11:27 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:11:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:11:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:11:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:11:28 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 11:11:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:28 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 11:11:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 11:11:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:11:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 11:11:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:11:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 11:11:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:11:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 11:11:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:28 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:28 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 11:11:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:11:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:11:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:11:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:29 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 11:11:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:11:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:11:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:11:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:29 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 11:11:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:11:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:29 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 11:11:29 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 11:11:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:29 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 11:11:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 113 msc 0 sec -2016-05-04 11:11:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 207 msc 0 sec -2016-05-04 11:11:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:30 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 11:11:30 INFO WorkspaceExplorerServiceImpl:188 - end time - 89 msc 0 sec -2016-05-04 11:11:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-04 11:11:35 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-04 11:11:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:11:35 INFO SClient4WPS:643 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-04 11:11:35 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:35 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:11:36 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-04 11:11:36 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-04 11:11:36 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-04 11:11:36 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-04 11:11:36 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-04 11:11:36 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-04 11:11:36 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-04 11:11:36 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-04 11:11:36 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-04 11:11:36 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-04 11:11:36 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:11:36 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 11:11:36 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 11:11:36 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 11:11:36 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 11:11:36 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 11:11:36 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 11:11:36 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 11:11:36 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:11:36 DEBUG SClient4WPS:660 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 11:11:36 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 11:11:36 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:11:36 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:11:36 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 11:11:36 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 11:11:36 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 11:11:36 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 11:11:36 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 11:11:36 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 11:11:36 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 11:11:36 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 11:11:36 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 11:11:36 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 11:11:36 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 11:11:36 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:11:36 DEBUG SClient4WPS:660 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 11:11:36 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 11:11:36 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:11:36 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:11:36 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 11:11:36 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 11:11:36 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 11:11:36 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:11:36 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 11:11:36 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 11:11:36 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:11:36 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:11:36 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 11:11:36 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 11:11:36 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 11:11:36 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:11:36 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 11:11:36 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 11:11:36 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:11:36 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:11:36 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 11:11:36 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 11:11:36 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 11:11:36 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:11:36 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 11:11:36 DEBUG SClient4WPS:664 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:11:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:11:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:11:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:11:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:36 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-04 11:11:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:11:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:11:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:11:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:11:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:11:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:11:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:11:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:11:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-04 11:11:36 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-04 11:11:36 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-04 11:11:36 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-04 11:11:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 11:11:36 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-04 11:11:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 11:11:36 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-04 11:11:36 INFO WorkspaceExplorerServiceImpl:142 - end time - 174 msc 0 sec -2016-05-04 11:11:36 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-04 11:11:44 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:11:44 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:11:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:11:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:11:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:44 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:11:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:11:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 11:11:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 11:11:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:44 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:11:44 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:11:44 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 11:11:44 DEBUG ServiceEngine:306 - get() - start -2016-05-04 11:11:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:11:44 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:11:44 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-04 11:11:44 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-04 11:11:44 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 11:11:44 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 11:11:44 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 11:11:44 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 11:11:44 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 11:11:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:11:44 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:11:44 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 11:11:44 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 11:11:44 DEBUG MongoIO:77 - open mongo connection -2016-05-04 11:11:44 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 11:11:44 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:11:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:11:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:11:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:11:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:11:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:11:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:11:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:11:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:11:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:11:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:11:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:11:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:11:44 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:11:44 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:11:44 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:11:44 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 11:11:44 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:11:44 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@95deabdf, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@59e6160b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@10b15a49, socketFactory=javax.net.DefaultSocketFactory@6b9e772e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 11:11:46 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 11:11:46 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 11:11:46 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 11:11:46 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 11:11:46 INFO WorkspaceExplorerServiceImpl:188 - end time - 66 msc 0 sec -2016-05-04 11:11:46 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 11:11:46 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 11:11:46 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1885893}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1580249, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:11:46 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 11:11:46 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:11:46 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:11:46 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:11:46 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:273628}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1402520, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:11:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:11:46 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2155140}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1021399, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:11:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:11:46 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1885894}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG command:56 - Command execution completed -2016-05-04 11:11:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG command:56 - Command execution completed -2016-05-04 11:11:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG command:56 - Command execution completed -2016-05-04 11:11:46 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 11:11:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG command:56 - Command execution completed -2016-05-04 11:11:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1568944}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:11:46 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:11:47 DEBUG command:56 - Command execution completed -2016-05-04 11:11:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=908293934, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:11:48 ERROR ServiceEngine:48 - get() -2016-05-04 11:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=908.3 ms, state=CONNECTED}] -2016-05-04 11:11:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:11:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:11:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:11:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:12:06 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1885893} -2016-05-04 11:13:11 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 11:13:11 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 11:13:11 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-04 11:13:11 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 11:13:11 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 11:13:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:13:11 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 11:13:11 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@5b3378a1 -2016-05-04 11:13:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:11 INFO ASLSession:352 - Logging the entrance -2016-05-04 11:13:11 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 11:13:11 DEBUG TemplateModel:83 - 2016-05-04 11:13:11, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 11:13:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:13:11 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 11:13:13 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 11:13:13 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 11:13:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:13:13 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 11:13:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:13:13 INFO ASLSession:352 - Logging the entrance -2016-05-04 11:13:13 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 11:13:13 DEBUG TemplateModel:83 - 2016-05-04 11:13:13, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 11:13:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:13:13 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 11:13:13 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 113 ms -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 11:13:13 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 11:13:13 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 11:13:13 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:13:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 11:13:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@5d0925e -2016-05-04 11:13:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@7dacd9c6 -2016-05-04 11:13:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@2b454b5 -2016-05-04 11:13:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@62935a8b -2016-05-04 11:13:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 103 ms -2016-05-04 11:13:13 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 11:13:14 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 11:13:14 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 11:13:14 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 11:13:14 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 11:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:13:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:13:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 11:13:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-04 11:13:14 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 11:13:14 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:13:14 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 11:13:14 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:13:14 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 11:13:14 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 11:13:14 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 11:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:13:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:13:14 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-04 11:13:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:14 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 11:13:14 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 11:13:14 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 11:13:14 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 11:13:14 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 11:13:14 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 11:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 11:13:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:13:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 11:13:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 47 ms -2016-05-04 11:13:14 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 11:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:14 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 11:13:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:14 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 11:13:14 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 11:13:14 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 11:13:14 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 11:13:14 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 11:13:14 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 11:13:14 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 11:13:14 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 11:13:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:15 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 11:13:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 11:13:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:13:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 11:13:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:13:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 11:13:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 11:13:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 11:13:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:16 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:16 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-04 11:13:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:16 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 11:13:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:13:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:13:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:16 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 11:13:16 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 11:13:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:13:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:13:16 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 11:13:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:13:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 31 ms -2016-05-04 11:13:16 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 11:13:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:13:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 11:13:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-04 11:13:16 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 11:13:16 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 11:13:16 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 11:13:16 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 11:13:16 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 11:13:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 11:13:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 11:13:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 11:13:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:16 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 11:13:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 328 msc 0 sec -2016-05-04 11:13:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 276 msc 0 sec -2016-05-04 11:13:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 178 msc 0 sec -2016-05-04 11:13:22 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 11:13:22 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 11:13:22 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 11:13:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:13:22 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:13:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:13:22 INFO SClient4WPS:643 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-04 11:13:22 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:13:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:13:23 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-04 11:13:23 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-04 11:13:23 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-04 11:13:23 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-04 11:13:23 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-04 11:13:23 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-04 11:13:23 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-04 11:13:23 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-04 11:13:23 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-04 11:13:23 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-04 11:13:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:13:23 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 11:13:23 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 11:13:23 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 11:13:23 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 11:13:23 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 11:13:23 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 11:13:23 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 11:13:23 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:23 DEBUG SClient4WPS:660 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 11:13:23 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 11:13:23 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:13:23 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:13:23 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 11:13:23 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 11:13:23 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 11:13:23 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 11:13:23 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 11:13:23 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 11:13:23 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 11:13:23 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 11:13:23 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 11:13:23 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 11:13:23 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 11:13:23 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:23 DEBUG SClient4WPS:660 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 11:13:23 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 11:13:23 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:13:23 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:13:23 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 11:13:23 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 11:13:23 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 11:13:23 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:23 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 11:13:23 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 11:13:23 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:13:23 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:13:23 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 11:13:23 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 11:13:23 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 11:13:23 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:23 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 11:13:23 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 11:13:23 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:13:23 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:13:23 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 11:13:23 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 11:13:23 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 11:13:23 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:23 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 11:13:23 DEBUG SClient4WPS:664 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:13:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:13:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:13:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:23 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-04 11:13:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-04 11:13:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:13:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:13:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 11:13:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 11:13:23 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-04 11:13:23 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-04 11:13:23 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-04 11:13:23 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-04 11:13:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 11:13:23 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-04 11:13:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-04 11:13:23 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-04 11:13:23 INFO WorkspaceExplorerServiceImpl:142 - end time - 205 msc 0 sec -2016-05-04 11:13:23 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-04 11:13:31 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:13:31 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:13:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:13:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:13:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:13:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:31 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:13:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:13:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:13:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:13:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:13:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:13:31 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 11:13:31 DEBUG ServiceEngine:306 - get() - start -2016-05-04 11:13:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:13:31 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:13:31 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-04 11:13:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-04 11:13:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 11:13:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 11:13:31 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 11:13:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 11:13:31 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 11:13:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:13:31 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:13:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 11:13:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 11:13:31 DEBUG MongoIO:77 - open mongo connection -2016-05-04 11:13:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:13:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:13:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:13:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 11:13:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:13:31 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 11:13:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@290ac7fd, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@53353e9f, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4ca26366, socketFactory=javax.net.DefaultSocketFactory@392be4d8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 11:13:31 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-04 11:13:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 11:13:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 11:13:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 11:13:31 INFO WorkspaceExplorerServiceImpl:188 - end time - 61 msc 0 sec -2016-05-04 11:13:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 11:13:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 11:13:31 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1885931}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1478994, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 11:13:31 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:273659}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1814875, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:31 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1885932}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2155165}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1008567, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG command:56 - Command execution completed -2016-05-04 11:13:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG command:56 - Command execution completed -2016-05-04 11:13:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG command:56 - Command execution completed -2016-05-04 11:13:31 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1568970}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 11:13:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1652683, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-04 11:13:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG command:56 - Command execution completed -2016-05-04 11:13:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1885932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:31 DEBUG command:56 - Command execution completed -2016-05-04 11:13:31 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1885932}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:32 DEBUG query:56 - Query completed -2016-05-04 11:13:32 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-04 11:13:32 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2155165} -2016-05-04 11:13:32 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1568970} -2016-05-04 11:13:32 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1885932}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 11:13:32 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:273659} -2016-05-04 11:13:32 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1885932} -2016-05-04 11:13:32 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1885931} -2016-05-04 11:13:32 INFO MongoIO:508 - Mongo has been closed -2016-05-04 11:13:32 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 11:13:32 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-04 11:13:32 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-04 11:13:32 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:13:32 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:13:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:13:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:13:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:13:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:32 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:13:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:13:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:32 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:13:32 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:13:32 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 11:13:32 DEBUG ServiceEngine:306 - get() - start -2016-05-04 11:13:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:13:32 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:13:32 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-04 11:13:32 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-04 11:13:32 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 11:13:32 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 11:13:32 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-04 11:13:32 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 11:13:32 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 11:13:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:13:32 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:13:32 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 11:13:32 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 11:13:32 DEBUG MongoIO:77 - open mongo connection -2016-05-04 11:13:32 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 11:13:32 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:32 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:32 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:32 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@290ac7fd, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@53353e9f, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4ca26366, socketFactory=javax.net.DefaultSocketFactory@392be4d8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 11:13:32 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 11:13:32 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 11:13:33 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1885933}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2511892, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:33 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 11:13:33 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:33 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:273660}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:33 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1559718, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:33 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2155166}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1037328, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:33 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1568971}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1409894, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-04 11:13:33 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1885934}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG command:56 - Command execution completed -2016-05-04 11:13:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG command:56 - Command execution completed -2016-05-04 11:13:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG command:56 - Command execution completed -2016-05-04 11:13:33 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 11:13:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:13:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:13:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:33 DEBUG command:56 - Command execution completed -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:13:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1885934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:13:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:33 DEBUG command:56 - Command execution completed -2016-05-04 11:13:33 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1885934}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:33 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:13:33 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-04 11:13:33 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 11:13:33 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-04 11:13:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-04 11:13:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-04 11:13:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 11:13:33 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 11:13:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-04 11:13:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-04 11:13:33 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:13:33 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:13:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:33 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:13:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:33 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:13:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:13:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:13:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:33 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:13:33 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:13:33 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:13:33 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 11:13:34 DEBUG query:56 - Query completed -2016-05-04 11:13:34 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-04 11:13:34 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2155166} -2016-05-04 11:13:34 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:273660} -2016-05-04 11:13:34 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1568971} -2016-05-04 11:13:34 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1885934}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 11:13:34 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1885934} -2016-05-04 11:13:34 INFO MongoIO:508 - Mongo has been closed -2016-05-04 11:13:34 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1885933} -2016-05-04 11:13:34 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 11:13:34 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-04 11:13:34 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-05-04 11:13:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:13:34 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:13:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:13:34 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-04 11:13:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:34 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:13:34 DEBUG ServiceEngine:193 - get() - start -2016-05-04 11:13:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:13:34 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:13:34 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 11:13:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 11:13:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 11:13:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-04 11:13:34 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-04 11:13:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 11:13:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:13:34 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:13:34 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:13:34 DEBUG Operation:173 - get(String) - start -2016-05-04 11:13:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 11:13:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 11:13:34 DEBUG MongoIO:77 - open mongo connection -2016-05-04 11:13:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 11:13:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@290ac7fd, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@53353e9f, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4ca26366, socketFactory=javax.net.DefaultSocketFactory@392be4d8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 11:13:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 11:13:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 11:13:34 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:273664}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1583303, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 11:13:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:34 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1885935}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1199331, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:34 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:34 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2155167}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=971019, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:34 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1885936}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 DEBUG command:56 - Command execution completed -2016-05-04 11:13:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 DEBUG command:56 - Command execution completed -2016-05-04 11:13:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1568972}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:13:34 DEBUG command:56 - Command execution completed -2016-05-04 11:13:34 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 11:13:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG command:56 - Command execution completed -2016-05-04 11:13:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3313551, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}] -2016-05-04 11:13:35 DEBUG command:56 - Command execution completed -2016-05-04 11:13:35 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:13:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG command:56 - Command execution completed -2016-05-04 11:13:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG command:56 - Command execution completed -2016-05-04 11:13:35 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:13:35 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG query:56 - Query completed -2016-05-04 11:13:35 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 11:13:35 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-04 11:13:35 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-04 11:13:35 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG update:56 - Update completed -2016-05-04 11:13:35 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1885936}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG query:56 - Query completed -2016-05-04 11:13:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 11:13:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 11:13:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 11:13:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 11:13:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 11:13:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 11:13:35 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-04 11:13:35 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-04 11:13:35 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-04 11:13:35 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-04 11:13:35 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:13:35 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:13:35 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-04 11:13:35 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-04 11:13:35 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-04 11:13:35 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-04 11:13:35 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-04 11:13:35 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-04 11:13:35 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-04 11:13:35 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-04 11:13:35 DEBUG BucketCoding:42 - coding name done -2016-05-04 11:13:35 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-04 11:13:35 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-04 11:13:35 DEBUG MongoIO:77 - open mongo connection -2016-05-04 11:13:35 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-04 11:13:35 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:35 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:35 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:35 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@290ac7fd, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@53353e9f, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4ca26366, socketFactory=javax.net.DefaultSocketFactory@392be4d8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-04 11:13:35 INFO MongoIO:106 - new mongo connection pool opened -2016-05-04 11:13:35 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-04 11:13:35 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:273665}] to mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1885937}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1685769, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:35 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-04 11:13:35 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1698027, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:35 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-04 11:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:35 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:35 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2155168}] to mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1252624, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-04 11:13:35 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1568973}] to mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1294301, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-04 11:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-04 11:13:35 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1885938}] to mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885938}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG command:56 - Command execution completed -2016-05-04 11:13:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885938}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG command:56 - Command execution completed -2016-05-04 11:13:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885938}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG command:56 - Command execution completed -2016-05-04 11:13:35 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:13:35 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:13:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885938}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG command:56 - Command execution completed -2016-05-04 11:13:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1885938}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG command:56 - Command execution completed -2016-05-04 11:13:35 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:13:35 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1885938}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG query:56 - Query completed -2016-05-04 11:13:35 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-04 11:13:35 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2155168} -2016-05-04 11:13:35 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:273665} -2016-05-04 11:13:35 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1568973} -2016-05-04 11:13:35 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1885938}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 11:13:35 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1885938} -2016-05-04 11:13:35 INFO MongoIO:508 - Mongo has been closed -2016-05-04 11:13:35 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1885937} -2016-05-04 11:13:35 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-04 11:13:35 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 11:13:35 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 11:13:35 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 11:13:35 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-04 11:13:35 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-04 11:13:35 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 11:13:35 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 11:13:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-04 11:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}] -2016-05-04 11:13:40 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2155167} -2016-05-04 11:13:40 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:273664} -2016-05-04 11:13:40 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1568972} -2016-05-04 11:13:40 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1885936}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-04 11:13:40 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1885936} -2016-05-04 11:13:40 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1885935} -2016-05-04 11:13:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:13:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:13:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 11:13:49 DEBUG DataMinerManagerServiceImpl:148 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-04 11:13:49 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-04 11:13:49 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-04 11:13:49 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-04 11:13:49 DEBUG WPS2SM:208 - Default Schema: null -2016-05-04 11:13:49 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-04 11:13:49 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-04 11:13:49 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-04 11:13:49 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:49 DEBUG SClient4WPS:692 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-04 11:13:49 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-04 11:13:49 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:13:49 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:13:49 DEBUG WPS2SM:100 - Guessed default value: -2016-05-04 11:13:49 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-04 11:13:49 DEBUG WPS2SM:111 - Machter find: true -2016-05-04 11:13:49 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-04 11:13:49 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-04 11:13:49 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-04 11:13:49 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-04 11:13:49 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-04 11:13:49 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-04 11:13:49 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-04 11:13:49 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-04 11:13:49 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:49 DEBUG SClient4WPS:692 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-04 11:13:49 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-04 11:13:49 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:13:49 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-04 11:13:49 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-04 11:13:49 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-04 11:13:49 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-04 11:13:49 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:49 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-04 11:13:49 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-04 11:13:49 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:13:49 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:13:49 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-04 11:13:49 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-04 11:13:49 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-04 11:13:49 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:49 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-04 11:13:49 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-04 11:13:49 DEBUG WPS2SM:92 - WPS type: -2016-05-04 11:13:49 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-04 11:13:49 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-04 11:13:49 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-04 11:13:49 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-04 11:13:49 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-04 11:13:49 DEBUG SClient4WPS:692 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-04 11:13:49 DEBUG SClient4WPS:700 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 11:13:49 DEBUG SClient4WPS:700 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-04 11:13:49 DEBUG SClient4WPS:700 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-05-04 11:13:49 DEBUG SClient4WPS:700 - UserInputs= key:epsilon, value=10 -2016-05-04 11:13:49 DEBUG SClient4WPS:700 - UserInputs= key:min_points, value=1 -2016-05-04 11:13:49 DEBUG SClient4WPS:761 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-04 11:13:49 DEBUG SClient4WPS:744 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-04 11:13:49 DEBUG SClient4WPS:744 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-05-04 11:13:49 DEBUG SClient4WPS:744 - Configuring Literal: epsilon to: 10 -2016-05-04 11:13:49 DEBUG SClient4WPS:744 - Configuring Literal: min_points to: 1 -2016-05-04 11:13:49 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 11:13:51 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-04 11:13:51 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-04 11:13:52 DEBUG SClient4WPS:415 - ExecuteProcessAsync: Invalid Response from service: Response isn't instance of ExecuteResponseDocumentImpl, class is class net.opengis.ows.x11.impl.ExceptionReportDocumentImpl -2016-05-04 11:13:52 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 11:13:52 DEBUG SClient4WPS:787 - WPSProcess->Returning Exception to the SM:Process error in WPS Execution -2016-05-04 11:13:52 ERROR DataMinerManagerServiceImpl:153 - Error in start computation: Process error in WPS Execution -2016-05-04 11:14:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:14:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:15:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:15:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:15:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:15:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:16:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:16:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:17:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:17:46 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:18:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:18:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:19:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:19:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:20:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:20:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:21:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:21:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:22:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:22:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:23:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:23:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:24:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:24:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:25:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:25:06 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:26:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:26:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:26:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:26:56 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:27:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:27:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:28:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:28:46 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:29:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:29:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:30:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:30:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:31:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:31:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:32:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 11:32:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 11:33:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 11:33:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:34:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:34:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:35:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:35:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:36:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:36:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:37:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:37:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 11:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:38:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:39:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 11:39:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 11:40:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:40:41 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:41:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 11:41:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 11:42:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 11:42:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 11:43:26 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 11:43:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 11:43:26 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 11:43:26 WARN SessionCheckerServiceImpl:80 - Scope is null at Wed May 04 11:43:26 CEST 2016 -2016-05-04 11:43:26 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 12:06:20 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 12:06:20 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 12:06:20 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-04 12:06:20 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 12:06:20 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 12:06:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 12:06:20 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 12:06:20 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@780ab614 -2016-05-04 12:06:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 12:06:20 INFO ASLSession:352 - Logging the entrance -2016-05-04 12:06:20 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 12:06:20 DEBUG TemplateModel:83 - 2016-05-04 12:06:20, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 12:06:20 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 12:06:20 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 12:06:22 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 12:06:22 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 12:06:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 12:06:22 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 12:06:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 12:06:22 INFO ASLSession:352 - Logging the entrance -2016-05-04 12:06:22 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 12:06:22 DEBUG TemplateModel:83 - 2016-05-04 12:06:22, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 12:06:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 12:06:22 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 12:06:22 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 111 ms -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 12:06:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 12:06:22 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 12:06:23 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 12:06:23 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 12:06:23 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 12:06:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 12:06:23 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 12:06:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 12:06:23 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-04 12:06:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:06:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:06:23 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 12:06:23 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 12:06:23 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 12:06:23 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 12:06:23 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 12:06:23 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 12:06:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-04 12:06:24 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:06:24 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:06:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 12:06:24 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 12:06:24 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@1cef92b0 -2016-05-04 12:06:24 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3e3491cc -2016-05-04 12:06:24 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@7ceb9f59 -2016-05-04 12:06:24 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@51cf492c -2016-05-04 12:06:24 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 94 ms -2016-05-04 12:06:24 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 12:06:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 3109 ms -2016-05-04 12:06:27 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 12:06:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 12:06:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:06:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:06:27 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 12:06:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:06:27 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 12:06:27 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 12:06:27 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 12:06:27 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 12:06:27 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 12:06:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 12:06:27 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:06:27 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 12:06:28 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 1020 ms -2016-05-04 12:06:28 DEBUG SClient4WPS:114 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 12:06:28 INFO SClient4WPS:119 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 12:06:28 DEBUG SClient4WPS:130 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 12:06:28 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 12:06:28 ERROR DataMinerManagerServiceImpl:98 - An error occurred getting the OperatorsClassifications list: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& -java.lang.Exception: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:161) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:93) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -Caused by: org.n52.wps.client.WPSClientException: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.retrieveCapsViaGET(StatWPSClientSession.java:361) - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.connect(StatWPSClientSession.java:89) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:332) - ... 37 more -2016-05-04 12:06:31 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 12:06:31 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 12:06:31 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 12:06:31 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 12:06:31 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 12:06:31 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 12:06:31 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 12:06:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:06:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:06:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:06:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:06:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 12:06:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 12:06:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:06:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:06:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:06:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:06:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:06:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:06:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:06:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:06:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 12:06:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 12:06:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:06:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:06:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:06:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:06:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:06:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:06:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:06:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:06:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 12:06:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 12:06:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:06:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:06:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:06:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:06:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:06:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:06:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:06:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:06:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 12:06:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 12:06:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:06:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:06:33 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 12:06:33 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 12:06:33 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 12:06:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 12:06:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:06:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:06:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:06:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:06:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:06:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:06:33 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 12:06:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:06:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 12:06:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 12:06:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:06:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:06:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:06:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:06:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:06:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:06:33 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 12:06:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:06:33 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 12:06:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 12:06:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 12:06:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:06:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:06:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:06:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:06:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:06:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:06:33 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 12:06:33 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 12:06:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:06:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 12:06:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:06:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:06:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 12:06:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:06:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 12:06:33 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 12:06:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-05-04 12:06:33 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 12:06:33 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 12:06:33 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 12:06:33 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 12:06:33 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 12:06:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:06:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 12:06:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 12:06:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 12:06:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 348 msc 0 sec -2016-05-04 12:06:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 254 msc 0 sec -2016-05-04 12:06:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 421 msc 0 sec -2016-05-04 12:07:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 12:07:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 12:08:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 12:08:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 12:09:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 12:09:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 12:09:38 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 12:09:38 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 12:09:38 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-04 12:09:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 12:09:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 12:09:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 12:09:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 12:09:38 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@10d411d7 -2016-05-04 12:09:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 12:09:38 INFO ASLSession:352 - Logging the entrance -2016-05-04 12:09:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 12:09:38 DEBUG TemplateModel:83 - 2016-05-04 12:09:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 12:09:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 12:09:38 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 12:09:40 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 12:09:40 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 12:09:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 12:09:40 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 12:09:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 12:09:40 INFO ASLSession:352 - Logging the entrance -2016-05-04 12:09:40 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 12:09:40 DEBUG TemplateModel:83 - 2016-05-04 12:09:40, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 12:09:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 12:09:40 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 12:09:40 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 136 ms -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 12:09:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 12:09:40 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 12:09:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 12:09:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 12:09:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 12:09:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 12:09:41 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 12:09:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 12:09:41 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-04 12:09:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:09:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:09:41 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 12:09:41 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 12:09:41 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 12:09:41 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 12:09:41 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 12:09:41 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 12:09:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-04 12:09:43 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:09:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:09:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 12:09:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 12:09:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@3ca31717 -2016-05-04 12:09:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3c8e64fb -2016-05-04 12:09:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@6ce45db -2016-05-04 12:09:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@286361b5 -2016-05-04 12:09:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 91 ms -2016-05-04 12:09:43 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 12:09:43 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 12:09:43 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 12:09:43 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 12:09:43 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 12:09:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 12:09:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:09:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 12:09:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-05-04 12:09:43 DEBUG SClient4WPS:114 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 12:09:43 INFO SClient4WPS:119 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 12:09:43 DEBUG SClient4WPS:130 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 12:09:43 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 12:09:48 ERROR DataMinerManagerServiceImpl:98 - An error occurred getting the OperatorsClassifications list: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& -java.lang.Exception: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:161) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:93) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -Caused by: org.n52.wps.client.WPSClientException: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.retrieveCapsViaGET(StatWPSClientSession.java:361) - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.connect(StatWPSClientSession.java:89) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:332) - ... 37 more -2016-05-04 12:09:49 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 6169 ms -2016-05-04 12:09:49 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 12:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 12:09:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:09:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:09:49 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 12:09:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:09:49 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 12:09:52 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 12:09:52 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 12:09:52 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 12:09:52 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 12:09:52 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 12:09:52 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 12:09:52 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 12:09:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:09:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:09:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:09:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:09:52 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 12:09:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 12:09:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:09:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:09:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:09:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:09:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:09:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:09:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:09:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:09:53 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 12:09:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 12:09:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:09:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:09:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:09:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:09:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:09:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:09:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:09:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:09:53 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 12:09:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 12:09:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:09:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:09:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:09:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:09:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:09:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:09:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:09:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:09:53 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 12:09:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 12:09:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:09:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:09:54 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 12:09:54 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 12:09:54 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 12:09:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 12:09:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:09:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:09:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:09:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:09:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:09:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:09:54 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 12:09:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 12:09:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 12:09:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:09:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:09:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:09:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:09:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:09:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:09:54 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 12:09:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:09:54 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 12:09:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 12:09:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 12:09:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 12:09:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 12:09:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 12:09:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 12:09:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 12:09:54 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 12:09:54 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 12:09:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 12:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 12:09:54 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 12:09:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 209 msc 0 sec -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 12:09:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:09:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 12:09:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 12:09:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:09:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 12:09:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-04 12:09:54 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 12:09:54 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 12:09:54 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 12:09:54 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 12:09:54 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 12:09:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 12:09:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 12:09:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-04 12:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 12:09:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 596 msc 0 sec -2016-05-04 12:09:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 1163 msc 1 sec -2016-05-04 12:10:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 12:10:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 12:11:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 12:11:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 12:12:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 12:12:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 12:13:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 12:13:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 12:14:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 12:14:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 12:15:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 12:15:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 12:16:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 12:16:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 12:16:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 12:16:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 12:17:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 12:17:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 12:18:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 12:18:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 12:19:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 12:19:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 12:20:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 12:20:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 12:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 12:21:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 12:22:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-04 12:22:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-04 12:23:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 12:23:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 14:02:30 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 14:02:30 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 14:02:30 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-04 14:02:30 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 14:02:30 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 14:02:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 14:02:30 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 14:02:30 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@52df42e2 -2016-05-04 14:02:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:02:30 INFO ASLSession:352 - Logging the entrance -2016-05-04 14:02:30 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 14:02:30 DEBUG TemplateModel:83 - 2016-05-04 14:02:30, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 14:02:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 14:02:30 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 14:02:32 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 14:02:32 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 14:02:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 14:02:32 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 14:02:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:02:32 INFO ASLSession:352 - Logging the entrance -2016-05-04 14:02:32 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 14:02:32 DEBUG TemplateModel:83 - 2016-05-04 14:02:32, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 14:02:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 14:02:32 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 14:02:32 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 129 ms -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 14:02:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 14:02:32 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 14:02:32 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:02:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 14:02:32 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@1fa754a1 -2016-05-04 14:02:32 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4e61188f -2016-05-04 14:02:32 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@157552e2 -2016-05-04 14:02:32 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@1a63b91a -2016-05-04 14:02:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 103 ms -2016-05-04 14:02:32 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 14:02:32 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 14:02:32 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 14:02:32 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 14:02:32 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 14:02:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:02:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:02:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 14:02:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-04 14:02:32 DEBUG SClient4WPS:114 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 14:02:32 INFO SClient4WPS:119 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 14:02:32 DEBUG SClient4WPS:130 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 14:02:32 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 14:02:33 ERROR DataMinerManagerServiceImpl:98 - An error occurred getting the OperatorsClassifications list: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& -java.lang.Exception: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:161) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:93) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -Caused by: org.n52.wps.client.WPSClientException: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.retrieveCapsViaGET(StatWPSClientSession.java:361) - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.connect(StatWPSClientSession.java:89) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:332) - ... 37 more -2016-05-04 14:02:33 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 14:02:33 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 14:02:33 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 14:02:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 14:02:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 14:02:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 14:02:33 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-04 14:02:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:02:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:02:33 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 14:02:33 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 14:02:33 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 14:02:33 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 14:02:33 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 14:02:33 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 14:02:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-04 14:02:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:02:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 14:02:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 56 ms -2016-05-04 14:02:33 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 14:02:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 14:02:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:02:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:02:33 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 14:02:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:02:33 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 14:02:33 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 14:02:33 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 14:02:33 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 14:02:33 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 14:02:33 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 14:02:33 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 14:02:33 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 14:02:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:02:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:02:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:02:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:02:34 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 14:02:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 14:02:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:02:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:02:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:02:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:02:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:02:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:02:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:02:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:02:34 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 14:02:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 14:02:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:02:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:02:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:02:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:02:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:02:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:02:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:02:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:02:34 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 14:02:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 14:02:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:02:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:02:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:02:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:02:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:02:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:02:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:02:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:02:34 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 14:02:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 14:02:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:02:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:02:35 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 14:02:35 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 14:02:35 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:02:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:02:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:02:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:02:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:02:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:02:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:02:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:02:35 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 14:02:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:02:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 14:02:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 14:02:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:02:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:02:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:02:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:02:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:02:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:02:35 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 14:02:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:02:35 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 14:02:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:02:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:02:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:02:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:02:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:02:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:02:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:02:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:02:35 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:02:35 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 14:02:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:02:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 14:02:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:02:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-04 14:02:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 14:02:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:02:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 14:02:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-04 14:02:35 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 14:02:35 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 14:02:35 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 14:02:35 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 14:02:35 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 14:02:35 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 14:02:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:02:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 14:02:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-04 14:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:02:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 355 msc 0 sec -2016-05-04 14:02:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 231 msc 0 sec -2016-05-04 14:02:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 346 msc 0 sec -2016-05-04 14:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 14:03:25 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 14:04:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:04:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 14:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:05:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 14:06:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:06:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 14:07:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:07:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 14:08:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:08:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 14:08:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 14:08:55 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 14:09:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:09:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 14:10:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:10:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 14:11:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 14:11:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 14:12:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:12:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 14:13:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:13:30 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 14:14:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 14:14:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 14:15:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-04 14:15:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-04 14:16:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:16:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 14:17:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 14:17:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 14:18:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:18:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 14:19:18 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 14:19:18 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 14:19:18 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-04 14:19:18 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 14:19:18 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 14:19:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 14:19:18 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 14:19:18 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@66d85e40 -2016-05-04 14:19:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:19:18 INFO ASLSession:352 - Logging the entrance -2016-05-04 14:19:18 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 14:19:18 DEBUG TemplateModel:83 - 2016-05-04 14:19:18, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 14:19:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 14:19:18 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 14:19:20 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 14:19:20 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 14:19:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 14:19:20 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 14:19:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:19:20 INFO ASLSession:352 - Logging the entrance -2016-05-04 14:19:20 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 14:19:20 DEBUG TemplateModel:83 - 2016-05-04 14:19:20, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 14:19:20 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 14:19:20 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 14:19:20 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 131 ms -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 14:19:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 14:19:20 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 14:19:20 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:19:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 14:19:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@46858a4b -2016-05-04 14:19:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@1e4367f -2016-05-04 14:19:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@169ef753 -2016-05-04 14:19:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2b37ebf -2016-05-04 14:19:21 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 110 ms -2016-05-04 14:19:21 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 14:19:21 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 14:19:21 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 14:19:21 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 14:19:21 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 14:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:19:21 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:19:21 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 14:19:21 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-04 14:19:21 DEBUG SClient4WPS:114 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 14:19:21 INFO SClient4WPS:119 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 14:19:21 DEBUG SClient4WPS:130 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 14:19:21 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 14:19:21 ERROR DataMinerManagerServiceImpl:98 - An error occurred getting the OperatorsClassifications list: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& -java.lang.Exception: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:161) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:93) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -Caused by: org.n52.wps.client.WPSClientException: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.retrieveCapsViaGET(StatWPSClientSession.java:361) - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.connect(StatWPSClientSession.java:89) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:332) - ... 37 more -2016-05-04 14:19:21 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 14:19:21 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 14:19:21 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 14:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:19:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 14:19:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 14:19:21 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-04 14:19:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:19:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:19:21 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 14:19:21 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 14:19:21 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 14:19:21 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 14:19:21 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 14:19:21 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 14:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-04 14:19:21 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:19:21 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 14:19:21 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-04 14:19:21 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 14:19:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 14:19:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:19:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:19:21 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 14:19:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:19:21 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 14:19:22 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 14:19:22 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 14:19:22 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 14:19:22 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 14:19:22 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 14:19:22 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:19:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:19:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:19:22 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 14:19:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 14:19:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:19:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:19:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:19:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:19:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:19:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:19:22 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 14:19:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 14:19:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:19:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:19:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:19:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:19:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:19:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:19:22 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 14:19:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 14:19:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:19:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:19:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:19:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:19:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:19:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:19:22 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 14:19:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 14:19:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:19:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:19:23 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 14:19:23 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 14:19:23 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:19:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:19:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:19:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:19:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:19:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:19:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:19:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:19:23 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 14:19:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:19:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 14:19:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-04 14:19:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:19:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:19:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:19:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:19:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:19:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:19:23 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 14:19:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:19:23 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 14:19:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:19:23 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 14:19:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:19:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:19:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:19:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 14:19:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 14:19:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 14:19:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 14:19:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 14:19:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 14:19:23 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 14:19:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 14:19:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 14:19:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:19:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 14:19:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 14:19:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-04 14:19:23 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 14:19:23 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 14:19:23 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 14:19:23 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 14:19:23 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 14:19:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 14:19:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 14:19:23 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 14:19:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 21 ms -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 14:19:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 14:19:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 351 msc 0 sec -2016-05-04 14:19:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 294 msc 0 sec -2016-05-04 14:19:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 193 msc 0 sec -2016-05-04 14:20:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 14:20:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 20:22:32 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-04 20:22:32 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-04 20:22:32 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-04 20:22:32 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 20:22:32 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 20:22:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 20:22:32 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 20:22:32 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@14c4db24 -2016-05-04 20:22:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 20:22:32 INFO ASLSession:352 - Logging the entrance -2016-05-04 20:22:32 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 20:22:32 DEBUG TemplateModel:83 - 2016-05-04 20:22:32, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 20:22:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 20:22:32 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-04 20:22:35 INFO SessionUtil:49 - no user found in session, use test user -2016-05-04 20:22:35 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-04 20:22:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 20:22:35 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-04 20:22:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 20:22:35 INFO ASLSession:352 - Logging the entrance -2016-05-04 20:22:35 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-04 20:22:35 DEBUG TemplateModel:83 - 2016-05-04 20:22:35, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-04 20:22:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 20:22:36 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 20:22:36 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 113 ms -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-04 20:22:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-04 20:22:36 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-04 20:22:36 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 20:22:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-04 20:22:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@4ac234c3 -2016-05-04 20:22:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@5221eb53 -2016-05-04 20:22:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5ed1daf6 -2016-05-04 20:22:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@77c927d6 -2016-05-04 20:22:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 236 ms -2016-05-04 20:22:37 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-04 20:22:37 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-04 20:22:37 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-04 20:22:37 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-04 20:22:37 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-04 20:22:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 20:22:37 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 20:22:37 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 20:22:37 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 20:22:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 20:22:37 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-04 20:22:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-04 20:22:37 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-04 20:22:37 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 20:22:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-04 20:22:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 20:22:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 20:22:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 22 ms -2016-05-04 20:22:37 DEBUG SClient4WPS:114 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-04 20:22:37 INFO SClient4WPS:119 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-04 20:22:37 DEBUG SClient4WPS:130 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-04 20:22:37 INFO StatWPSClientSession:84 - CONNECT -2016-05-04 20:22:37 ERROR DataMinerManagerServiceImpl:98 - An error occurred getting the OperatorsClassifications list: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& -java.lang.Exception: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:161) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:93) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -Caused by: org.n52.wps.client.WPSClientException: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.retrieveCapsViaGET(StatWPSClientSession.java:361) - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.connect(StatWPSClientSession.java:89) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:332) - ... 37 more -2016-05-04 20:22:38 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-04 20:22:38 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-04 20:22:38 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-04 20:22:38 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-04 20:22:38 DEBUG JCRRepository:271 - Initialize repository -2016-05-04 20:22:38 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-04 20:22:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-04 20:22:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 20:22:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-04 20:22:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 73 ms -2016-05-04 20:22:38 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-04 20:22:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-04 20:22:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 20:22:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 20:22:38 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-04 20:22:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 20:22:38 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-04 20:22:39 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 20:22:39 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 20:22:39 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-04 20:22:39 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-04 20:22:39 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-04 20:22:39 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 20:22:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 20:22:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 20:22:39 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-04 20:22:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-04 20:22:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 20:22:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 20:22:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 20:22:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 20:22:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 20:22:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 20:22:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 20:22:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-04 20:22:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 20:22:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 20:22:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 20:22:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 20:22:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 20:22:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 20:22:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 20:22:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-04 20:22:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 20:22:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 20:22:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 20:22:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 20:22:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 20:22:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 20:22:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-04 20:22:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-04 20:22:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 20:22:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 20:22:40 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-04 20:22:40 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-04 20:22:40 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-04 20:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 20:22:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-04 20:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 20:22:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 20:22:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 20:22:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 20:22:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 20:22:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 20:22:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 20:22:40 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-04 20:22:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 20:22:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 20:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 20:22:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-04 20:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-04 20:22:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 20:22:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 20:22:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 20:22:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 20:22:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 20:22:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 20:22:40 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-04 20:22:40 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-04 20:22:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 20:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 20:22:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-04 20:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-04 20:22:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-04 20:22:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-04 20:22:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-04 20:22:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-04 20:22:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-04 20:22:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-04 20:22:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 20:22:40 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-04 20:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 20:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 20:22:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-04 20:22:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 20:22:40 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-04 20:22:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 20:22:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-04 20:22:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-04 20:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 20:22:40 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-04 20:22:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 20:22:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-04 20:22:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-05-04 20:22:41 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-04 20:22:41 INFO ISClientConnector:82 - found only one RR, take it -2016-05-04 20:22:41 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-04 20:22:41 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-04 20:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 20:22:41 DEBUG StorageClient:517 - set scope: /gcube -2016-05-04 20:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 20:22:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-04 20:22:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-04 20:22:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-04 20:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 20:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 20:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-04 20:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-04 20:22:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 360 msc 0 sec -2016-05-04 20:22:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 211 msc 0 sec -2016-05-04 20:22:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 417 msc 0 sec -2016-05-05 10:20:35 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-05 10:20:35 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-05 10:20:35 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-05 10:20:35 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 10:20:35 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 10:20:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 10:20:35 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 10:20:35 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@11fbfb0e -2016-05-05 10:20:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 10:20:35 INFO ASLSession:352 - Logging the entrance -2016-05-05 10:20:35 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 10:20:35 DEBUG TemplateModel:83 - 2016-05-05 10:20:35, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 10:20:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 10:20:35 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-05 10:20:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 10:20:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 10:20:38 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 10:20:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 10:20:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 10:20:38 INFO ASLSession:352 - Logging the entrance -2016-05-05 10:20:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 10:20:38 DEBUG TemplateModel:83 - 2016-05-05 10:20:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 10:20:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 10:20:38 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 10:20:38 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 133 ms -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-05 10:20:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-05 10:20:38 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-05 10:20:39 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 10:20:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 10:20:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7bec1569 -2016-05-05 10:20:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@70705b22 -2016-05-05 10:20:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@2c1879b0 -2016-05-05 10:20:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4aa95c5e -2016-05-05 10:20:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 310 ms -2016-05-05 10:20:39 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-05 10:20:39 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 10:20:39 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 10:20:39 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 10:20:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 10:20:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 10:20:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 10:20:39 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-05 10:20:39 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-05 10:20:39 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 10:20:39 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-05 10:20:39 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-05 10:20:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 10:20:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 10:20:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 10:20:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 10:20:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-05 10:20:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 27 ms -2016-05-05 10:20:40 DEBUG SClient4WPS:114 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-05 10:20:40 INFO SClient4WPS:119 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 10:20:40 DEBUG SClient4WPS:130 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-05 10:20:40 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 10:20:40 ERROR DataMinerManagerServiceImpl:98 - An error occurred getting the OperatorsClassifications list: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& -java.lang.Exception: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:346) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.getOperatorsClassifications(SClient4WPS.java:161) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:93) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -Caused by: org.n52.wps.client.WPSClientException: Error occured while retrieving capabilities from url: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService?Service=WPS&Request=GetCapabilities&version=1.0.0& - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.retrieveCapsViaGET(StatWPSClientSession.java:361) - at org.gcube.portlets.user.dataminermanager.server.smservice.wps.StatWPSClientSession.connect(StatWPSClientSession.java:89) - at org.gcube.portlets.user.dataminermanager.server.smservice.SClient4WPS.requestCapability(SClient4WPS.java:332) - ... 37 more -2016-05-05 10:20:40 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-05 10:20:40 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-05 10:20:40 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-05 10:20:40 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-05 10:20:40 DEBUG JCRRepository:271 - Initialize repository -2016-05-05 10:20:40 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-05 10:20:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 10:20:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 10:20:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-05 10:20:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 19 ms -2016-05-05 10:20:40 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-05 10:20:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 10:20:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 10:20:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 10:20:40 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-05 10:20:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 10:20:40 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-05 10:20:41 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 10:20:41 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 10:20:41 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-05 10:20:41 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 10:20:41 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 10:20:41 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-05 10:20:41 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-05 10:20:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 10:20:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 10:20:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 10:20:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 10:20:41 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 10:20:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-05 10:20:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 10:20:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 10:20:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 10:20:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 10:20:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 10:20:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 10:20:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 10:20:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 10:20:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 10:20:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-05 10:20:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 10:20:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 10:20:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 10:20:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 10:20:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 10:20:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 10:20:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 10:20:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 10:20:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 10:20:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-05 10:20:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 10:20:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 10:20:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 10:20:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 10:20:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 10:20:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 10:20:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 10:20:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 10:20:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 10:20:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-05 10:20:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 10:20:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 10:20:42 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 10:20:42 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 10:20:42 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 10:20:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 10:20:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 10:20:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 10:20:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 10:20:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 10:20:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 10:20:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 10:20:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 10:20:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 10:20:42 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-05 10:20:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 10:20:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 10:20:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 10:20:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 10:20:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 10:20:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 10:20:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 10:20:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 10:20:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 10:20:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 10:20:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 10:20:42 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-05 10:20:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 10:20:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 10:20:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 10:20:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 10:20:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 10:20:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 10:20:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 10:20:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 10:20:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 10:20:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 10:20:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 10:20:42 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 10:20:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 10:20:43 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-05 10:20:43 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-05 10:20:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 10:20:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 10:20:43 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 10:20:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 10:20:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 10:20:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 10:20:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 10:20:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-05 10:20:43 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 10:20:43 INFO ISClientConnector:82 - found only one RR, take it -2016-05-05 10:20:43 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-05 10:20:43 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 10:20:43 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 10:20:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 10:20:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 10:20:43 INFO WorkspaceExplorerServiceImpl:178 - end time - 235 msc 0 sec -2016-05-05 10:20:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 42 ms -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 10:20:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 10:20:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 10:20:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-05 10:20:43 INFO WorkspaceExplorerServiceImpl:178 - end time - 484 msc 0 sec -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 10:20:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 10:20:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 10:20:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 25 ms -2016-05-05 10:20:43 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 10:20:43 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 10:20:43 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 10:20:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 10:20:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 10:20:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 40 ms -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 10:20:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 10:20:43 INFO WorkspaceExplorerServiceImpl:178 - end time - 537 msc 0 sec -2016-05-05 10:21:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 10:21:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 10:22:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 10:22:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 10:23:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 10:23:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 10:24:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 10:24:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 10:25:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 10:25:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 10:26:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 10:26:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:44:57 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-05 15:44:57 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-05 15:44:57 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-05 15:44:57 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 15:44:57 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 15:44:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:44:57 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 15:44:57 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@c58816f -2016-05-05 15:44:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:44:57 INFO ASLSession:352 - Logging the entrance -2016-05-05 15:44:57 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 15:44:57 DEBUG TemplateModel:83 - 2016-05-05 15:44:57, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 15:44:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:44:57 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-05 15:44:59 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 15:44:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 15:44:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:44:59 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 15:44:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:44:59 INFO ASLSession:352 - Logging the entrance -2016-05-05 15:44:59 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 15:44:59 DEBUG TemplateModel:83 - 2016-05-05 15:44:59, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 15:44:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:44:59 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 15:44:59 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 126 ms -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-05 15:45:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-05 15:45:00 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-05 15:45:00 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:45:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 15:45:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@5843e5a3 -2016-05-05 15:45:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@356b0945 -2016-05-05 15:45:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5a78e098 -2016-05-05 15:45:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@5c9bc990 -2016-05-05 15:45:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 373 ms -2016-05-05 15:45:01 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-05 15:45:01 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 15:45:01 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 15:45:01 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 15:45:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:45:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:45:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:45:01 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-05 15:45:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:01 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-05 15:45:01 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 15:45:01 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-05 15:45:01 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-05 15:45:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:45:01 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:45:01 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-05 15:45:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 21 ms -2016-05-05 15:45:01 DEBUG SClient4WPS:114 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-05 15:45:01 INFO SClient4WPS:119 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:45:01 DEBUG SClient4WPS:130 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-05 15:45:01 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 15:45:01 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-05 15:45:01 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-05 15:45:01 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-05 15:45:01 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-05 15:45:01 DEBUG JCRRepository:271 - Initialize repository -2016-05-05 15:45:01 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-05 15:45:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 15:45:01 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:45:01 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-05 15:45:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 84 ms -2016-05-05 15:45:01 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-05 15:45:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:45:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:01 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-05 15:45:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:01 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-05 15:45:02 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 15:45:02 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 15:45:02 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-05 15:45:02 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 15:45:02 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 15:45:02 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-05 15:45:02 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-05 15:45:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:02 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 15:45:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-05 15:45:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 15:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-05 15:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 15:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-05 15:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 15:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-05 15:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:03 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:45:03 DEBUG SClient4WPS:251 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:04 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-05 15:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:04 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:04 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 15:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:04 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-05 15:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:45:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 15:45:04 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-05 15:45:04 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 15:45:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 15:45:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:45:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 15:45:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-05 15:45:04 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 15:45:04 INFO ISClientConnector:82 - found only one RR, take it -2016-05-05 15:45:04 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-05 15:45:04 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 15:45:04 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 15:45:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:45:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 15:45:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 21 ms -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 15:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:04 INFO WorkspaceExplorerServiceImpl:178 - end time - 477 msc 0 sec -2016-05-05 15:45:04 INFO WorkspaceExplorerServiceImpl:178 - end time - 245 msc 0 sec -2016-05-05 15:45:04 INFO WorkspaceExplorerServiceImpl:178 - end time - 385 msc 0 sec -2016-05-05 15:45:11 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 15:45:11 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 15:45:11 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 15:45:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:45:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:45:11 INFO SClient4WPS:643 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-05 15:45:11 DEBUG SClient4WPS:270 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:45:11 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 15:45:12 DEBUG SClient4WPS:293 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-05 15:45:12 DEBUG SClient4WPS:297 - WPSClient->Fetching Inputs -2016-05-05 15:45:12 DEBUG SClient4WPS:299 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-05 15:45:12 DEBUG SClient4WPS:299 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-05 15:45:12 DEBUG SClient4WPS:299 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-05 15:45:12 DEBUG SClient4WPS:299 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-05 15:45:12 DEBUG SClient4WPS:299 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-05 15:45:12 DEBUG SClient4WPS:304 - WPSClient->Fetching Outputs -2016-05-05 15:45:12 DEBUG SClient4WPS:306 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-05 15:45:12 DEBUG SClient4WPS:306 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-05 15:45:12 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:45:12 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-05 15:45:12 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-05 15:45:12 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-05 15:45:12 DEBUG WPS2SM:208 - Default Schema: null -2016-05-05 15:45:12 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-05 15:45:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-05 15:45:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-05 15:45:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:12 DEBUG SClient4WPS:660 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-05 15:45:12 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-05 15:45:12 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:45:12 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:45:12 DEBUG WPS2SM:100 - Guessed default value: -2016-05-05 15:45:12 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 15:45:12 DEBUG WPS2SM:111 - Machter find: true -2016-05-05 15:45:12 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-05 15:45:12 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-05 15:45:12 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-05 15:45:12 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-05 15:45:12 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-05 15:45:12 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-05 15:45:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-05 15:45:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-05 15:45:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:12 DEBUG SClient4WPS:660 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-05 15:45:12 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-05 15:45:12 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:45:12 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:45:12 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-05 15:45:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-05 15:45:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-05 15:45:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:12 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-05 15:45:12 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-05 15:45:12 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:45:12 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:45:12 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-05 15:45:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-05 15:45:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-05 15:45:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:12 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-05 15:45:12 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-05 15:45:12 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:45:12 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:45:12 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-05 15:45:12 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-05 15:45:12 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-05 15:45:12 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:12 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-05 15:45:12 DEBUG SClient4WPS:664 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:45:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-05 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-05 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:45:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:45:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:45:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:45:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:45:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-05 15:45:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-05 15:45:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-05 15:45:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-05 15:45:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 15:45:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-05 15:45:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 15:45:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-05 15:45:13 INFO WorkspaceExplorerServiceImpl:138 - end time - 265 msc 0 sec -2016-05-05 15:45:13 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-05 15:45:28 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:45:28 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:45:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:45:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:45:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:45:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:28 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:45:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:45:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:45:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:45:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:45:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:45:28 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 15:45:28 DEBUG ServiceEngine:306 - get() - start -2016-05-05 15:45:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:45:28 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:45:28 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-05 15:45:28 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-05 15:45:28 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:45:28 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 15:45:28 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 15:45:28 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:45:28 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 15:45:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:45:28 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:45:28 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:45:28 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:45:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:45:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:45:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:45:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:45:28 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:45:28 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 15:45:28 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 15:45:28 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:45:28 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:28 INFO WorkspaceExplorerServiceImpl:178 - end time - 135 msc 0 sec -2016-05-05 15:45:28 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 15:45:28 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 15:45:28 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 15:45:28 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:28 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:28 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ef059f92, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5dd3d13e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7d4e6d91, socketFactory=javax.net.DefaultSocketFactory@27fb8adc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:45:28 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:45:28 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:45:28 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1913520}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:298232}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=18583217, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:28 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:45:28 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:28 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=26329507, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:28 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=26.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:28 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1591363}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1499028, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=26.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 15:45:28 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1913521}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2177509}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=945620, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=26.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 15:45:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1913521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG command:56 - Command execution completed -2016-05-05 15:45:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1913521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG command:56 - Command execution completed -2016-05-05 15:45:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1913521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG command:56 - Command execution completed -2016-05-05 15:45:28 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 15:45:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1913521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG command:56 - Command execution completed -2016-05-05 15:45:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1913521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:28 DEBUG command:56 - Command execution completed -2016-05-05 15:45:28 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1913521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=15.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=26.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 15:45:29 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:45:29 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:45:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:45:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:29 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:45:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:45:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:29 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:45:29 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:45:29 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-05 15:45:29 DEBUG ServiceEngine:306 - get() - start -2016-05-05 15:45:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:45:29 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:45:29 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-05 15:45:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 15:45:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:45:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 15:45:29 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 15:45:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:45:29 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-05 15:45:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:45:29 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:45:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:45:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:45:29 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:45:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:45:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ef059f92, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5dd3d13e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7d4e6d91, socketFactory=javax.net.DefaultSocketFactory@27fb8adc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:45:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:45:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:45:29 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1913522}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:298233}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1152093, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:45:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2381438, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:45:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 15:45:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:45:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:45:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:45:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:45:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:29 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2177510}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1021195, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:29 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:45:29 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:45:29 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1591365}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1913523}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1913523}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG command:56 - Command execution completed -2016-05-05 15:45:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1913523}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2005532, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-05 15:45:29 DEBUG command:56 - Command execution completed -2016-05-05 15:45:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1913523}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG command:56 - Command execution completed -2016-05-05 15:45:29 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-05 15:45:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1913523}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG command:56 - Command execution completed -2016-05-05 15:45:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1913523}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 DEBUG command:56 - Command execution completed -2016-05-05 15:45:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1913523}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:29 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-05 15:45:29 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-05 15:45:29 INFO WorkspaceExplorerServiceImpl:178 - end time - 63 msc 0 sec -2016-05-05 15:45:29 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:45:30 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 15:45:30 DEBUG query:56 - Query completed -2016-05-05 15:45:30 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2177509} -2016-05-05 15:45:30 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1913521}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1913521} -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:298232} -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1913520} -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1591363} -2016-05-05 15:45:30 INFO MongoIO:508 - Mongo has been closed -2016-05-05 15:45:30 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 15:45:30 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 15:45:30 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-05 15:45:30 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 15:45:30 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 15:45:30 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 15:45:30 DEBUG query:56 - Query completed -2016-05-05 15:45:30 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2177510} -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:298233} -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1591365} -2016-05-05 15:45:30 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1913523}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1913523} -2016-05-05 15:45:30 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1913522} -2016-05-05 15:45:30 INFO MongoIO:508 - Mongo has been closed -2016-05-05 15:45:30 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-05 15:45:30 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-05 15:45:30 INFO WorkspaceExplorerServiceImpl:491 - returning size: 849 -2016-05-05 15:45:30 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:45:30 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:45:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:45:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:45:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:30 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:45:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:45:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 15:45:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:45:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:30 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:45:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:45:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:45:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:45:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:30 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:45:30 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:45:30 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:45:30 INFO WorkspaceExplorerServiceImpl:491 - returning size: 849 -2016-05-05 15:45:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:45:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:45:31 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-05 15:45:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:31 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:45:31 DEBUG ServiceEngine:193 - get() - start -2016-05-05 15:45:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:45:31 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:45:31 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-05 15:45:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-05 15:45:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:45:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 15:45:31 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-05 15:45:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:45:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:45:31 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:45:31 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:45:31 DEBUG Operation:173 - get(String) - start -2016-05-05 15:45:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:45:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:45:31 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:45:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:45:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ef059f92, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5dd3d13e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7d4e6d91, socketFactory=javax.net.DefaultSocketFactory@27fb8adc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:45:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:45:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:45:31 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1913524}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:298234}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1336147, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:45:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2332958, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:31 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:2177512}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1061445, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:31 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:1591366}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1764891, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-05 15:45:31 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1913525}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG command:56 - Command execution completed -2016-05-05 15:45:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG command:56 - Command execution completed -2016-05-05 15:45:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG command:56 - Command execution completed -2016-05-05 15:45:31 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 15:45:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG command:56 - Command execution completed -2016-05-05 15:45:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG command:56 - Command execution completed -2016-05-05 15:45:31 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:45:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG command:56 - Command execution completed -2016-05-05 15:45:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG command:56 - Command execution completed -2016-05-05 15:45:31 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:45:31 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:31 DEBUG query:56 - Query completed -2016-05-05 15:45:31 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-05 15:45:31 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 15:45:31 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-05 15:45:31 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:32 DEBUG update:56 - Update completed -2016-05-05 15:45:32 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1913525}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:32 DEBUG query:56 - Query completed -2016-05-05 15:45:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:45:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:45:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:45:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:45:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:45:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:45:32 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:45:32 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-05 15:45:32 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-05 15:45:32 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-05 15:45:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:45:32 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:45:32 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-05 15:45:32 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-05 15:45:32 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-05 15:45:32 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:45:32 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-05 15:45:32 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-05 15:45:32 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:45:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:45:32 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:45:32 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:45:32 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:45:32 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:45:32 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:45:32 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:32 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:32 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:32 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ef059f92, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5dd3d13e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7d4e6d91, socketFactory=javax.net.DefaultSocketFactory@27fb8adc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:45:32 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:45:32 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:45:33 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1913526}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:298235}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1400073, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1504026, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:33 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:45:33 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:33 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:45:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:33 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:33 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2177514}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=927787, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:45:33 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1591367}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1918949, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:45:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-05 15:45:33 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1913527}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1913527}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG command:56 - Command execution completed -2016-05-05 15:45:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1913527}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG command:56 - Command execution completed -2016-05-05 15:45:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1913527}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG command:56 - Command execution completed -2016-05-05 15:45:33 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:45:33 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:45:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1913527}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG command:56 - Command execution completed -2016-05-05 15:45:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1913527}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG command:56 - Command execution completed -2016-05-05 15:45:33 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:45:33 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1913527}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:45:33 DEBUG query:56 - Query completed -2016-05-05 15:45:33 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-05 15:45:33 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2177514} -2016-05-05 15:45:33 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:298235} -2016-05-05 15:45:33 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1591367} -2016-05-05 15:45:33 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1913527}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:45:33 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1913527} -2016-05-05 15:45:33 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1913526} -2016-05-05 15:45:33 INFO MongoIO:508 - Mongo has been closed -2016-05-05 15:45:33 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:45:33 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:45:33 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:45:33 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:45:33 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-05 15:45:33 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:45:33 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:45:33 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:45:39 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:2177512} -2016-05-05 15:45:39 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1913525}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:45:39 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:1591366} -2016-05-05 15:45:39 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:298234} -2016-05-05 15:45:39 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1913525} -2016-05-05 15:45:39 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1913524} -2016-05-05 15:45:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:45:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:45:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:45:52 DEBUG DataMinerManagerServiceImpl:134 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-05 15:45:52 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-05 15:45:52 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-05 15:45:52 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-05 15:45:52 DEBUG WPS2SM:208 - Default Schema: null -2016-05-05 15:45:52 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-05 15:45:52 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-05 15:45:52 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-05 15:45:52 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:52 DEBUG SClient4WPS:691 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-05 15:45:52 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-05 15:45:52 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:45:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:45:52 DEBUG WPS2SM:100 - Guessed default value: -2016-05-05 15:45:52 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 15:45:52 DEBUG WPS2SM:111 - Machter find: true -2016-05-05 15:45:52 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-05 15:45:52 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-05 15:45:52 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-05 15:45:52 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-05 15:45:52 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-05 15:45:52 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-05 15:45:52 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-05 15:45:52 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-05 15:45:52 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:52 DEBUG SClient4WPS:691 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-05 15:45:52 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-05 15:45:52 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:45:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:45:52 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-05 15:45:52 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-05 15:45:52 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-05 15:45:52 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:52 DEBUG SClient4WPS:691 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-05 15:45:52 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-05 15:45:52 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:45:52 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:45:52 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-05 15:45:52 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-05 15:45:52 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-05 15:45:52 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:52 DEBUG SClient4WPS:691 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-05 15:45:52 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-05 15:45:52 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:45:52 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:45:52 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-05 15:45:52 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-05 15:45:52 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-05 15:45:52 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:45:52 DEBUG SClient4WPS:691 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-05 15:45:52 DEBUG SClient4WPS:699 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:45:52 DEBUG SClient4WPS:699 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-05 15:45:52 DEBUG SClient4WPS:699 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-05-05 15:45:52 DEBUG SClient4WPS:699 - UserInputs= key:epsilon, value=10 -2016-05-05 15:45:52 DEBUG SClient4WPS:699 - UserInputs= key:min_points, value=1 -2016-05-05 15:45:52 DEBUG SClient4WPS:760 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:45:52 DEBUG SClient4WPS:743 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-05 15:45:52 DEBUG SClient4WPS:743 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-05-05 15:45:52 DEBUG SClient4WPS:743 - Configuring Literal: epsilon to: 10 -2016-05-05 15:45:52 DEBUG SClient4WPS:743 - Configuring Literal: min_points to: 1 -2016-05-05 15:45:52 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 15:45:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:45:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:45:53 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-05 15:45:53 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-05 15:45:53 DEBUG SClient4WPS:411 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528 -2016-05-05 15:45:53 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:45:53 DEBUG SClient4WPS:780 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528 -2016-05-05 15:45:53 DEBUG SClient4WPS:705 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528 -2016-05-05 15:45:53 DEBUG SClient4WPS:716 - ComputationId: ComputationId [id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528] -2016-05-05 15:46:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:46:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:46:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:46:03 DEBUG SClient4WPS:794 - GetComputationStatus(): ComputationId=ComputationId [id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528] -2016-05-05 15:46:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 15:46:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 15:46:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528 -2016-05-05 15:46:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 15:46:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 15:46:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 15:46:03 DEBUG SClient4WPS:810 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - - - -2016-05-05 15:46:03 DEBUG SClient4WPS:882 - WPS STATUS:0.0 -2016-05-05 15:46:03 DEBUG SClient4WPS:893 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 15:46:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:46:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:46:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:46:13 DEBUG SClient4WPS:794 - GetComputationStatus(): ComputationId=ComputationId [id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528] -2016-05-05 15:46:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 15:46:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 15:46:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528 -2016-05-05 15:46:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 15:46:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 15:46:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 15:46:13 DEBUG SClient4WPS:810 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/MlVhZmJ4MllueEs3OW9hNzZSbXEyNU5FSUdhVmVocHdHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-05 15:46:13 DEBUG SClient4WPS:868 - WPS SUCCESS -2016-05-05 15:46:13 DEBUG SClient4WPS:893 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-05 15:46:13 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528] -2016-05-05 15:46:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:46:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:46:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:46:13 DEBUG SClient4WPS:431 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528 -2016-05-05 15:46:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=adbcdb89-c7e4-4eaf-9e8f-7564223a8528 -2016-05-05 15:46:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 15:46:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 15:46:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 15:46:13 DEBUG SClient4WPS:442 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/MlVhZmJ4MllueEs3OW9hNzZSbXEyNU5FSUdhVmVocHdHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-05 15:46:13 DEBUG SClient4WPS:963 - Process Executed -2016-05-05 15:46:13 DEBUG SClient4WPS:582 - Node Name: wps:ComplexData -2016-05-05 15:46:13 DEBUG SClient4WPS:582 - Node Name: #text -2016-05-05 15:46:13 DEBUG SClient4WPS:582 - Node Name: wps:ComplexData -2016-05-05 15:46:13 DEBUG SClient4WPS:582 - Node Name: ogr:FeatureCollection -2016-05-05 15:46:13 DEBUG SClient4WPS:582 - Node Name: gml:featureMember -2016-05-05 15:46:13 DEBUG SClient4WPS:582 - Node Name: ogr:Result -2016-05-05 15:46:13 DEBUG SClient4WPS:549 - Node Name: d4science:Data- Value:http://data-d.d4science.org/MlVhZmJ4MllueEs3OW9hNzZSbXEyNU5FSUdhVmVocHdHbWJQNStIS0N6Yz0 -2016-05-05 15:46:13 DEBUG SClient4WPS:549 - Node Name: d4science:Description- Value:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-05-05 15:46:13 DEBUG SClient4WPS:549 - Node Name: d4science:MimeType- Value:text/csv -2016-05-05 15:46:13 DEBUG SClient4WPS:511 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/MlVhZmJ4MllueEs3OW9hNzZSbXEyNU5FSUdhVmVocHdHbWJQNStIS0N6Yz0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], mimeType=text/csv] -2016-05-05 15:46:13 DEBUG SClient4WPS:1011 - Adding OBJ:F0 -2016-05-05 15:46:13 DEBUG SClient4WPS:1017 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/MlVhZmJ4MllueEs3OW9hNzZSbXEyNU5FSUdhVmVocHdHbWJQNStIS0N6Yz0, name=F0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=OBJECT] -2016-05-05 15:46:13 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/MlVhZmJ4MllueEs3OW9hNzZSbXEyNU5FSUdhVmVocHdHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getDescription()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-05 15:46:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:46:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:47:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:47:16 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 15:47:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:47:16 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-05 15:47:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:47:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:47:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:47:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:47:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:47:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:47:16 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:47:16 DEBUG ServiceEngine:193 - get() - start -2016-05-05 15:47:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:47:16 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:47:16 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-05 15:47:16 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-05 15:47:16 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:47:16 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 15:47:16 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-05 15:47:16 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:47:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:47:16 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:47:16 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:47:16 DEBUG Operation:173 - get(String) - start -2016-05-05 15:47:16 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:47:16 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:47:16 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:47:16 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:47:16 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:47:16 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:47:16 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ef059f92, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5dd3d13e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7d4e6d91, socketFactory=javax.net.DefaultSocketFactory@27fb8adc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:47:16 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:47:16 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:298560}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1913966}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1095826, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:47:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1215317, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:47:16 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:47:16 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:47:16 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:47:16 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1913967}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 15:47:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:47:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:47:16 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG query:56 - Query completed -2016-05-05 15:47:16 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-05 15:47:16 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 15:47:16 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2177744}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=744559, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:47:16 DEBUG update:56 - Update completed -2016-05-05 15:47:16 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:25, serverValue:1913967}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG query:56 - Query completed -2016-05-05 15:47:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:47:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:47:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:47:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:47:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:47:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:47:16 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1591602}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2667634, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-05 15:47:16 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-05 15:47:16 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-05 15:47:16 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-05 15:47:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:47:16 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:47:16 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-05 15:47:16 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-05 15:47:16 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-05 15:47:16 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:47:16 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-05 15:47:16 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-05 15:47:16 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:47:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:47:16 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:47:16 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:47:16 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:47:16 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:47:16 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:47:16 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:47:16 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:47:16 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ef059f92, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5dd3d13e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7d4e6d91, socketFactory=javax.net.DefaultSocketFactory@27fb8adc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:47:16 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:47:16 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:298561}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1913968}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=994351, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:47:16 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:47:16 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:47:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1190118, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:47:16 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:47:16 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2177745}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1075553, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1591603}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1262583, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:47:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 15:47:16 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1913969}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1913969}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1913969}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1913969}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:47:16 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:47:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1913969}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1913969}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG command:56 - Command execution completed -2016-05-05 15:47:16 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:47:16 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1913969}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:47:16 DEBUG query:56 - Query completed -2016-05-05 15:47:16 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-05 15:47:16 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2177745} -2016-05-05 15:47:16 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:298561} -2016-05-05 15:47:16 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1591603} -2016-05-05 15:47:16 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1913969}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:47:16 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1913969} -2016-05-05 15:47:16 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1913968} -2016-05-05 15:47:16 INFO MongoIO:508 - Mongo has been closed -2016-05-05 15:47:16 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:47:16 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:47:16 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:47:16 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:47:16 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-05 15:47:16 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:47:16 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:47:16 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:47:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:47:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-05 15:47:17 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1913967}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:47:17 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1591602} -2016-05-05 15:47:17 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:298560} -2016-05-05 15:47:17 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2177744} -2016-05-05 15:47:17 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1913967} -2016-05-05 15:47:17 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1913966} -2016-05-05 15:47:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:47:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 15:49:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:49:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:50:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:50:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:51:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:51:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:52:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:52:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:53:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:53:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 15:54:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 15:54:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 15:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:55:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:57:19 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-05 15:57:19 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-05 15:57:19 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-05 15:57:19 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 15:57:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 15:57:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:57:19 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 15:57:19 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6293de96 -2016-05-05 15:57:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:57:19 INFO ASLSession:352 - Logging the entrance -2016-05-05 15:57:19 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 15:57:19 DEBUG TemplateModel:83 - 2016-05-05 15:57:19, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 15:57:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:57:19 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-05 15:57:21 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 15:57:21 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 15:57:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:57:21 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 15:57:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:21 INFO ASLSession:352 - Logging the entrance -2016-05-05 15:57:21 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 15:57:21 DEBUG TemplateModel:83 - 2016-05-05 15:57:21, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 15:57:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:57:21 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 15:57:22 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 123 ms -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-05 15:57:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-05 15:57:22 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-05 15:57:22 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:57:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 15:57:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@5ca841ee -2016-05-05 15:57:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@34b6b493 -2016-05-05 15:57:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@519bb520 -2016-05-05 15:57:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2f714f42 -2016-05-05 15:57:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 97 ms -2016-05-05 15:57:22 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-05 15:57:22 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-05 15:57:22 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 15:57:22 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-05 15:57:22 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-05 15:57:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:57:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-05 15:57:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-05-05 15:57:22 DEBUG SClient4WPS:114 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-05 15:57:22 INFO SClient4WPS:119 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:57:22 DEBUG SClient4WPS:130 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-05 15:57:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 15:57:23 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 15:57:23 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 15:57:23 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 15:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:57:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:57:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:57:23 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-05 15:57:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:23 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-05 15:57:23 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-05 15:57:23 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-05 15:57:23 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-05 15:57:23 DEBUG JCRRepository:271 - Initialize repository -2016-05-05 15:57:23 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-05 15:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 15:57:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:57:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-05 15:57:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-05 15:57:23 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-05 15:57:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:57:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:23 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-05 15:57:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:23 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-05 15:57:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:57:23 DEBUG SClient4WPS:251 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-05 15:57:23 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 15:57:24 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 15:57:24 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-05 15:57:24 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 15:57:24 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 15:57:24 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:24 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 15:57:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-05 15:57:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 15:57:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-05 15:57:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 15:57:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-05 15:57:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 15:57:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-05 15:57:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:26 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 15:57:26 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 15:57:26 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:26 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-05 15:57:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 15:57:26 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 15:57:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:26 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-05 15:57:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:26 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-05 15:57:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:57:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:57:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:26 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:26 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-05 15:57:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:57:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 15:57:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-05 15:57:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:57:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 15:57:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-05 15:57:26 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 15:57:26 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 15:57:26 INFO ISClientConnector:82 - found only one RR, take it -2016-05-05 15:57:26 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-05 15:57:26 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-05 15:57:26 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-05 15:57:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 15:57:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 15:57:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-05 15:57:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:26 INFO WorkspaceExplorerServiceImpl:178 - end time - 332 msc 0 sec -2016-05-05 15:57:26 INFO WorkspaceExplorerServiceImpl:178 - end time - 186 msc 0 sec -2016-05-05 15:57:26 INFO WorkspaceExplorerServiceImpl:178 - end time - 315 msc 0 sec -2016-05-05 15:57:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 15:57:30 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 15:57:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:57:30 INFO SClient4WPS:643 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-05 15:57:30 DEBUG SClient4WPS:270 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:57:30 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 15:57:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:57:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:57:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:57:30 INFO SClient4WPS:643 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-05 15:57:30 DEBUG SClient4WPS:270 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:57:30 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 15:57:30 DEBUG SClient4WPS:293 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-05 15:57:30 DEBUG SClient4WPS:297 - WPSClient->Fetching Inputs -2016-05-05 15:57:30 DEBUG SClient4WPS:299 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-05 15:57:30 DEBUG SClient4WPS:299 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-05 15:57:30 DEBUG SClient4WPS:299 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-05 15:57:30 DEBUG SClient4WPS:299 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-05 15:57:30 DEBUG SClient4WPS:299 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-05 15:57:30 DEBUG SClient4WPS:304 - WPSClient->Fetching Outputs -2016-05-05 15:57:30 DEBUG SClient4WPS:306 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-05 15:57:30 DEBUG SClient4WPS:306 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-05 15:57:30 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:57:30 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-05 15:57:30 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-05 15:57:30 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-05 15:57:30 DEBUG WPS2SM:208 - Default Schema: null -2016-05-05 15:57:30 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-05 15:57:30 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-05 15:57:30 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-05 15:57:30 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:30 DEBUG SClient4WPS:660 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-05 15:57:30 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-05 15:57:30 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:57:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:57:30 DEBUG WPS2SM:100 - Guessed default value: -2016-05-05 15:57:30 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 15:57:30 DEBUG WPS2SM:111 - Machter find: true -2016-05-05 15:57:30 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-05 15:57:30 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-05 15:57:30 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-05 15:57:30 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-05 15:57:30 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-05 15:57:30 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-05 15:57:30 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-05 15:57:30 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-05 15:57:30 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:30 DEBUG SClient4WPS:660 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-05 15:57:30 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-05 15:57:30 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:57:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:57:30 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-05 15:57:30 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-05 15:57:30 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-05 15:57:30 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:30 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-05 15:57:30 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-05 15:57:30 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:57:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:57:30 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-05 15:57:30 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-05 15:57:30 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-05 15:57:30 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:30 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-05 15:57:30 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-05 15:57:30 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:57:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:57:30 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-05 15:57:30 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-05 15:57:30 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-05 15:57:30 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:30 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-05 15:57:30 DEBUG SClient4WPS:664 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-05 15:57:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:57:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:57:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:57:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:57:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:30 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-05 15:57:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:30 DEBUG SClient4WPS:293 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-05 15:57:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-05 15:57:30 DEBUG SClient4WPS:297 - WPSClient->Fetching Inputs -2016-05-05 15:57:31 DEBUG SClient4WPS:299 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-05 15:57:31 DEBUG SClient4WPS:299 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-05 15:57:31 DEBUG SClient4WPS:299 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-05 15:57:31 DEBUG SClient4WPS:299 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-05 15:57:31 DEBUG SClient4WPS:299 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-05 15:57:31 DEBUG SClient4WPS:304 - WPSClient->Fetching Outputs -2016-05-05 15:57:31 DEBUG SClient4WPS:306 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-05 15:57:31 DEBUG SClient4WPS:306 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-05 15:57:31 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:57:31 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-05 15:57:31 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-05 15:57:31 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-05 15:57:31 DEBUG WPS2SM:208 - Default Schema: null -2016-05-05 15:57:31 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-05 15:57:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-05 15:57:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-05 15:57:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:31 DEBUG SClient4WPS:660 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-05 15:57:31 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-05 15:57:31 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:57:31 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:57:31 DEBUG WPS2SM:100 - Guessed default value: -2016-05-05 15:57:31 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 15:57:31 DEBUG WPS2SM:111 - Machter find: true -2016-05-05 15:57:31 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-05 15:57:31 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-05 15:57:31 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-05 15:57:31 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-05 15:57:31 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-05 15:57:31 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-05 15:57:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-05 15:57:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-05 15:57:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:31 DEBUG SClient4WPS:660 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-05 15:57:31 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:57:31 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:57:31 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-05 15:57:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-05 15:57:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-05 15:57:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:31 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-05 15:57:31 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-05 15:57:31 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:57:31 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:57:31 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-05 15:57:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-05 15:57:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-05 15:57:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:31 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-05 15:57:31 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-05 15:57:31 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:57:31 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:57:31 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-05 15:57:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-05 15:57:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-05 15:57:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:57:31 DEBUG SClient4WPS:660 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 DEBUG SClient4WPS:664 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:57:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:57:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-05 15:57:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-05 15:57:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-05 15:57:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-05 15:57:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 15:57:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-05 15:57:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 15:57:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-05 15:57:31 INFO WorkspaceExplorerServiceImpl:138 - end time - 239 msc 0 sec -2016-05-05 15:57:31 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:57:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:57:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:31 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:57:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 15:57:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:57:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:57:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:57:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:57:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 15:57:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 15:57:32 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-05 15:57:32 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-05 15:57:32 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-05 15:57:32 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-05 15:57:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 15:57:32 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-05 15:57:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 15:57:32 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-05 15:57:32 INFO WorkspaceExplorerServiceImpl:138 - end time - 184 msc 0 sec -2016-05-05 15:57:32 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-05 15:58:10 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:58:10 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:58:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:58:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:58:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:58:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:10 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:58:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:58:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:58:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:58:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:10 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:58:10 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:58:10 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 15:58:10 DEBUG ServiceEngine:306 - get() - start -2016-05-05 15:58:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:58:10 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:58:10 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-05 15:58:10 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-05 15:58:10 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:58:10 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 15:58:10 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 15:58:10 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:58:10 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 15:58:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:58:10 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:58:10 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:58:10 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:58:10 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:58:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:58:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:58:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:58:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:58:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:58:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:58:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:10 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:58:10 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:58:10 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:58:10 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:10 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 15:58:10 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 15:58:10 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:10 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:10 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a49cc248, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@68f7c401, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@6265537d, socketFactory=javax.net.DefaultSocketFactory@6a4c6602, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:58:10 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:58:10 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 15:58:10 INFO WorkspaceExplorerServiceImpl:178 - end time - 54 msc 0 sec -2016-05-05 15:58:11 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:58:11 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 15:58:11 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 15:58:11 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:299209}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1618949, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:11 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:58:11 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:11 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:11 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1914837}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1851192, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:11 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:11 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2178237}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1176061, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:11 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1592103}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1312360, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 15:58:11 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1914838}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1914838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG command:56 - Command execution completed -2016-05-05 15:58:11 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1914838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG command:56 - Command execution completed -2016-05-05 15:58:11 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1914838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG command:56 - Command execution completed -2016-05-05 15:58:11 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 15:58:11 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1914838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG command:56 - Command execution completed -2016-05-05 15:58:11 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1914838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG command:56 - Command execution completed -2016-05-05 15:58:11 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1914838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 15:58:12 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:58:12 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:58:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:58:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:58:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:58:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:12 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:58:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:58:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:58:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:58:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:12 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:58:12 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:58:12 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-05 15:58:12 DEBUG ServiceEngine:306 - get() - start -2016-05-05 15:58:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:58:12 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:58:12 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-05 15:58:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 15:58:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:58:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 15:58:12 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 15:58:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:58:12 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-05 15:58:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:58:12 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:58:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:58:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:58:12 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:58:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:58:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a49cc248, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@68f7c401, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@6265537d, socketFactory=javax.net.DefaultSocketFactory@6a4c6602, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:58:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:58:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:58:12 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1914839}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1272260, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:58:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:12 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:299210}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1366328, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:12 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2178238}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=968252, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:58:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:58:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:58:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 15:58:12 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 15:58:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 15:58:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:12 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1592104}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1312962, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 15:58:12 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:58:12 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-05 15:58:12 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1914840}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1914840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG command:56 - Command execution completed -2016-05-05 15:58:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1914840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG query:56 - Query completed -2016-05-05 15:58:12 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-05 15:58:12 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2178237} -2016-05-05 15:58:12 DEBUG command:56 - Command execution completed -2016-05-05 15:58:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1914840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1914838}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:58:12 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1592103} -2016-05-05 15:58:12 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:299209} -2016-05-05 15:58:12 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1914838} -2016-05-05 15:58:12 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1914837} -2016-05-05 15:58:12 DEBUG command:56 - Command execution completed -2016-05-05 15:58:12 INFO MongoIO:508 - Mongo has been closed -2016-05-05 15:58:12 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-05 15:58:12 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 15:58:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1914840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 15:58:12 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-05 15:58:12 DEBUG command:56 - Command execution completed -2016-05-05 15:58:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1914840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 DEBUG command:56 - Command execution completed -2016-05-05 15:58:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1914840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:12 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-05 15:58:12 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-05 15:58:12 INFO WorkspaceExplorerServiceImpl:178 - end time - 46 msc 0 sec -2016-05-05 15:58:12 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 15:58:12 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 15:58:12 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 15:58:12 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 15:58:12 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 15:58:13 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:58:13 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:58:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:58:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:58:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:58:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:13 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:58:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:58:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 15:58:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 15:58:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:13 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:58:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:58:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:58:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:58:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:13 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:58:13 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:58:13 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:58:13 INFO WorkspaceExplorerServiceImpl:491 - returning size: 849 -2016-05-05 15:58:13 DEBUG query:56 - Query completed -2016-05-05 15:58:13 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-05 15:58:13 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2178238} -2016-05-05 15:58:13 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:299210} -2016-05-05 15:58:13 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1914840}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:58:13 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1592104} -2016-05-05 15:58:13 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1914840} -2016-05-05 15:58:13 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1914839} -2016-05-05 15:58:13 INFO MongoIO:508 - Mongo has been closed -2016-05-05 15:58:13 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-05 15:58:13 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-05 15:58:13 INFO WorkspaceExplorerServiceImpl:491 - returning size: 849 -2016-05-05 15:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 15:58:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 15:58:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:58:14 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-05 15:58:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:14 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:58:14 DEBUG ServiceEngine:193 - get() - start -2016-05-05 15:58:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:58:14 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:58:14 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-05 15:58:14 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-05 15:58:14 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:58:14 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 15:58:14 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-05 15:58:14 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:58:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:58:14 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:58:14 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:58:14 DEBUG Operation:173 - get(String) - start -2016-05-05 15:58:14 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:58:14 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:58:14 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:58:14 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:58:14 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:14 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:14 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a49cc248, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@68f7c401, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@6265537d, socketFactory=javax.net.DefaultSocketFactory@6a4c6602, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:58:14 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:58:14 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:299213}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1914841}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1354561, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:14 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:58:14 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:14 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1564063, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:14 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2178241}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=944678, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1592107}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2025060, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1914842}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 15:58:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:58:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:58:14 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG query:56 - Query completed -2016-05-05 15:58:14 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-05 15:58:14 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 15:58:14 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-05 15:58:14 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG update:56 - Update completed -2016-05-05 15:58:14 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1914842}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG query:56 - Query completed -2016-05-05 15:58:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 15:58:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 15:58:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 15:58:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 15:58:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 15:58:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 15:58:14 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-05 15:58:14 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-05 15:58:14 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-05 15:58:14 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-05 15:58:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:58:14 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:58:14 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-05 15:58:14 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-05 15:58:14 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-05 15:58:14 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 15:58:14 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-05 15:58:14 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-05 15:58:14 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 15:58:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 15:58:14 DEBUG BucketCoding:42 - coding name done -2016-05-05 15:58:14 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 15:58:14 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 15:58:14 DEBUG MongoIO:77 - open mongo connection -2016-05-05 15:58:14 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 15:58:14 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:14 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:14 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a49cc248, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@68f7c401, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@6265537d, socketFactory=javax.net.DefaultSocketFactory@6a4c6602, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 15:58:14 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 15:58:14 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:299214}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1370082, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1914843}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 15:58:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:14 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1642866, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:14 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2178242}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=740436, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1592108}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1220246, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-05 15:58:14 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1914844}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1914844}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1914844}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1914844}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:58:14 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:58:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1914844}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1914844}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG command:56 - Command execution completed -2016-05-05 15:58:14 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:58:14 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1914844}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG query:56 - Query completed -2016-05-05 15:58:14 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-05 15:58:14 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2178242} -2016-05-05 15:58:14 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:299214} -2016-05-05 15:58:14 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1592108} -2016-05-05 15:58:14 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1914844}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:58:14 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1914844} -2016-05-05 15:58:14 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1914843} -2016-05-05 15:58:14 INFO MongoIO:508 - Mongo has been closed -2016-05-05 15:58:14 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-05 15:58:14 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:58:14 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:58:14 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:58:14 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-05 15:58:14 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-05 15:58:14 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:58:14 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:58:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 15:58:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-05 15:58:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 15:58:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 15:58:17 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2178241} -2016-05-05 15:58:17 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:299213} -2016-05-05 15:58:17 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1914842}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 15:58:17 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1592107} -2016-05-05 15:58:17 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1914842} -2016-05-05 15:58:17 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1914841} -2016-05-05 15:58:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 15:58:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 15:58:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:58:33 DEBUG DataMinerManagerServiceImpl:134 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-05 15:58:33 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-05 15:58:33 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-05 15:58:33 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-05 15:58:33 DEBUG WPS2SM:208 - Default Schema: null -2016-05-05 15:58:33 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-05 15:58:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-05 15:58:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-05 15:58:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:58:33 DEBUG SClient4WPS:691 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-05 15:58:33 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-05 15:58:33 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:58:33 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:58:33 DEBUG WPS2SM:100 - Guessed default value: -2016-05-05 15:58:33 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 15:58:33 DEBUG WPS2SM:111 - Machter find: true -2016-05-05 15:58:33 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-05 15:58:33 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-05 15:58:33 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-05 15:58:33 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-05 15:58:33 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-05 15:58:33 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-05 15:58:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-05 15:58:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-05 15:58:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:58:33 DEBUG SClient4WPS:691 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-05 15:58:33 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-05 15:58:33 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:58:33 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 15:58:33 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-05 15:58:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-05 15:58:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-05 15:58:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:58:33 DEBUG SClient4WPS:691 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-05 15:58:33 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-05 15:58:33 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:58:33 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:58:33 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-05 15:58:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-05 15:58:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-05 15:58:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:58:33 DEBUG SClient4WPS:691 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-05 15:58:33 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-05 15:58:33 DEBUG WPS2SM:92 - WPS type: -2016-05-05 15:58:33 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-05 15:58:33 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-05 15:58:33 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-05 15:58:33 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-05 15:58:33 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 15:58:33 DEBUG SClient4WPS:691 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-05 15:58:33 DEBUG SClient4WPS:699 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:58:33 DEBUG SClient4WPS:699 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-05-05 15:58:33 DEBUG SClient4WPS:699 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-05-05 15:58:33 DEBUG SClient4WPS:699 - UserInputs= key:epsilon, value=10 -2016-05-05 15:58:33 DEBUG SClient4WPS:699 - UserInputs= key:min_points, value=1 -2016-05-05 15:58:33 DEBUG SClient4WPS:760 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-05 15:58:33 DEBUG SClient4WPS:743 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-05 15:58:33 DEBUG SClient4WPS:743 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-05-05 15:58:33 DEBUG SClient4WPS:743 - Configuring Literal: epsilon to: 10 -2016-05-05 15:58:33 DEBUG SClient4WPS:743 - Configuring Literal: min_points to: 1 -2016-05-05 15:58:33 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 15:58:33 DEBUG SClient4WPS:384 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-05 15:58:33 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-05 15:58:34 DEBUG SClient4WPS:411 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=58008f17-3fae-4a30-b729-00be4021e5d0 -2016-05-05 15:58:34 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 15:58:34 DEBUG SClient4WPS:780 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=58008f17-3fae-4a30-b729-00be4021e5d0 -2016-05-05 15:58:34 DEBUG SClient4WPS:705 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=58008f17-3fae-4a30-b729-00be4021e5d0 -2016-05-05 15:58:34 DEBUG SClient4WPS:716 - ComputationId: ComputationId [id=58008f17-3fae-4a30-b729-00be4021e5d0, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=58008f17-3fae-4a30-b729-00be4021e5d0] -2016-05-05 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:58:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 15:58:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:58:44 DEBUG SClient4WPS:794 - GetComputationStatus(): ComputationId=ComputationId [id=58008f17-3fae-4a30-b729-00be4021e5d0, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=58008f17-3fae-4a30-b729-00be4021e5d0] -2016-05-05 15:58:44 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 15:58:44 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 15:58:44 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=58008f17-3fae-4a30-b729-00be4021e5d0 -2016-05-05 15:58:44 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 15:58:44 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 15:58:44 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 15:58:44 DEBUG SClient4WPS:810 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/TkVaUExPK1VONHU3OW9hNzZSbXEyendBcUljSUpFZVJHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-05 15:58:44 DEBUG SClient4WPS:868 - WPS SUCCESS -2016-05-05 15:58:44 DEBUG SClient4WPS:893 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-05 15:58:44 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=58008f17-3fae-4a30-b729-00be4021e5d0, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=58008f17-3fae-4a30-b729-00be4021e5d0] -2016-05-05 15:58:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 15:58:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 15:58:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 15:58:44 DEBUG SClient4WPS:431 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=58008f17-3fae-4a30-b729-00be4021e5d0 -2016-05-05 15:58:44 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=58008f17-3fae-4a30-b729-00be4021e5d0 -2016-05-05 15:58:44 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 15:58:44 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 15:58:44 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 15:58:44 DEBUG SClient4WPS:442 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/TkVaUExPK1VONHU3OW9hNzZSbXEyendBcUljSUpFZVJHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-05 15:58:44 DEBUG SClient4WPS:963 - Process Executed -2016-05-05 15:58:44 DEBUG SClient4WPS:582 - Node Name: wps:ComplexData -2016-05-05 15:58:44 DEBUG SClient4WPS:582 - Node Name: #text -2016-05-05 15:58:44 DEBUG SClient4WPS:582 - Node Name: wps:ComplexData -2016-05-05 15:58:44 DEBUG SClient4WPS:582 - Node Name: ogr:FeatureCollection -2016-05-05 15:58:44 DEBUG SClient4WPS:582 - Node Name: gml:featureMember -2016-05-05 15:58:44 DEBUG SClient4WPS:582 - Node Name: ogr:Result -2016-05-05 15:58:44 DEBUG SClient4WPS:549 - Node Name: d4science:Data- Value:http://data-d.d4science.org/TkVaUExPK1VONHU3OW9hNzZSbXEyendBcUljSUpFZVJHbWJQNStIS0N6Yz0 -2016-05-05 15:58:44 DEBUG SClient4WPS:549 - Node Name: d4science:Description- Value:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-05-05 15:58:44 DEBUG SClient4WPS:549 - Node Name: d4science:MimeType- Value:text/csv -2016-05-05 15:58:44 DEBUG SClient4WPS:511 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/TkVaUExPK1VONHU3OW9hNzZSbXEyendBcUljSUpFZVJHbWJQNStIS0N6Yz0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], mimeType=text/csv] -2016-05-05 15:58:44 DEBUG SClient4WPS:1011 - Adding OBJ:F0 -2016-05-05 15:58:44 DEBUG SClient4WPS:1017 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/TkVaUExPK1VONHU3OW9hNzZSbXEyendBcUljSUpFZVJHbWJQNStIS0N6Yz0, name=F0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=OBJECT] -2016-05-05 15:58:44 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/TkVaUExPK1VONHU3OW9hNzZSbXEyendBcUljSUpFZVJHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getDescription()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-05 15:59:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 15:59:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:00:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 16:00:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 16:00:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:01:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 16:01:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 16:02:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 16:02:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 16:03:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 16:03:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 16:04:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 16:04:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 16:05:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 16:05:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:06:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 16:06:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 16:07:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 16:07:24 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 16:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 16:09:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 16:09:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 16:10:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 16:10:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 16:11:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 16:11:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 16:11:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 16:11:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 16:12:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 16:12:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 16:13:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 16:13:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:14:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 16:14:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 16:15:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 16:15:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 16:16:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 16:16:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 16:17:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 16:17:29 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 16:18:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 16:18:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 16:19:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 16:19:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 16:20:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 16:20:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:21:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 16:21:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 16:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 16:22:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 16:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 16:22:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 16:23:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:24:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 16:24:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 16:25:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 16:25:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 16:26:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 16:27:34 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 16:27:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 16:27:34 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 16:27:34 WARN SessionCheckerServiceImpl:80 - Scope is null at Thu May 05 16:27:34 CEST 2016 -2016-05-05 16:27:34 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 17:15:46 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-05 17:15:46 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-05 17:15:46 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-05 17:15:46 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 17:15:46 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 17:15:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:15:46 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 17:15:46 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@f79f0d4 -2016-05-05 17:15:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:15:46 INFO ASLSession:352 - Logging the entrance -2016-05-05 17:15:46 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 17:15:46 DEBUG TemplateModel:83 - 2016-05-05 17:15:46, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 17:15:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:15:46 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-05 17:15:48 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 17:15:48 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 17:15:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:15:48 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 17:15:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:15:48 INFO ASLSession:352 - Logging the entrance -2016-05-05 17:15:48 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 17:15:48 DEBUG TemplateModel:83 - 2016-05-05 17:15:48, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 17:15:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:15:48 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 17:15:48 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 125 ms -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-05 17:15:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-05 17:15:49 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-05 17:15:49 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:15:49 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 17:15:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7dedd370 -2016-05-05 17:15:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@114ad035 -2016-05-05 17:15:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@73df29f1 -2016-05-05 17:15:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@ab78f56 -2016-05-05 17:15:49 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 236 ms -2016-05-05 17:15:49 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-05 17:15:50 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-05 17:15:50 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:15:50 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 17:15:50 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 17:15:50 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 17:15:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:15:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:15:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:15:50 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-05 17:15:50 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-05 17:15:50 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-05 17:15:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:15:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:15:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:15:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:15:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-05 17:15:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 30 ms -2016-05-05 17:15:50 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-05 17:15:50 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:15:50 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-05 17:15:50 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 17:15:50 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-05 17:15:50 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-05 17:15:50 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-05 17:15:50 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-05 17:15:50 DEBUG JCRRepository:271 - Initialize repository -2016-05-05 17:15:50 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-05 17:15:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 17:15:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:15:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-05 17:15:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 20 ms -2016-05-05 17:15:50 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-05 17:15:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:15:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:15:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:15:50 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-05 17:15:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:15:50 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-05 17:15:51 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 17:15:51 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 17:15:51 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-05 17:15:51 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 17:15:51 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 17:15:51 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-05 17:15:51 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-05 17:15:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:15:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:15:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:15:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:15:51 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:15:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-05 17:15:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:15:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:15:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:15:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:15:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:15:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:15:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:15:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:15:51 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 17:15:52 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:15:52 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-05 17:15:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-05 17:15:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:15:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:15:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:15:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:15:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:15:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:15:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:15:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:15:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 17:15:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-05 17:15:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:15:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:15:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:15:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:15:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:15:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:15:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:15:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:15:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 17:15:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-05 17:15:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:15:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:15:53 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 17:15:53 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 17:15:53 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 17:15:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:15:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:15:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:15:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:15:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:15:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:15:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:15:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:15:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:15:53 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-05 17:15:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:15:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:15:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:15:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:15:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:15:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:15:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:15:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:15:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:15:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:15:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:15:53 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-05 17:15:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:15:53 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-05 17:15:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:15:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 17:15:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:15:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:15:53 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:15:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:15:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:15:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:15:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:15:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:15:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:15:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:15:53 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:15:53 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-05 17:15:53 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 17:15:53 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 17:15:53 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 33 ms -2016-05-05 17:15:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:15:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 17:15:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:15:53 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:15:53 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 17:15:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-05 17:15:54 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 17:15:54 INFO ISClientConnector:82 - found only one RR, take it -2016-05-05 17:15:54 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-05 17:15:54 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-05 17:15:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 17:15:54 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 17:15:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 17:15:54 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 17:15:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:15:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 17:15:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-05 17:15:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 17:15:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 17:15:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-05 17:15:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:15:54 INFO WorkspaceExplorerServiceImpl:178 - end time - 377 msc 0 sec -2016-05-05 17:15:54 INFO WorkspaceExplorerServiceImpl:178 - end time - 221 msc 0 sec -2016-05-05 17:15:54 INFO WorkspaceExplorerServiceImpl:178 - end time - 384 msc 0 sec -2016-05-05 17:16:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:01 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:16:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:16:01 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-05 17:16:01 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:16:01 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 17:16:02 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-05 17:16:02 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-05 17:16:02 DEBUG SClient4WPS:303 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-05 17:16:02 DEBUG SClient4WPS:303 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-05 17:16:02 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-05 17:16:02 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-05 17:16:02 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:16:02 DEBUG WPS2SM:325 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-05 17:16:02 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-05 17:16:02 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-05 17:16:02 DEBUG WPS2SM:208 - Default Schema: null -2016-05-05 17:16:02 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-05 17:16:02 DEBUG WPS2SM:235 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 17:16:02 DEBUG WPS2SM:236 - Machter find: true -2016-05-05 17:16:02 DEBUG WPS2SM:237 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-05 17:16:02 DEBUG WPS2SM:239 - Machter start: 31 -2016-05-05 17:16:02 DEBUG WPS2SM:241 - Machter end: 97 -2016-05-05 17:16:02 DEBUG WPS2SM:242 - Machter Group Count: 1 -2016-05-05 17:16:02 DEBUG WPS2SM:245 - Matcher separator: | -2016-05-05 17:16:02 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-05 17:16:02 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-05 17:16:02 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 17:16:02 DEBUG SClient4WPS:652 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-05 17:16:02 DEBUG WPS2SM:300 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-05 17:16:02 DEBUG WPS2SM:92 - WPS type: -2016-05-05 17:16:02 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 17:16:02 DEBUG WPS2SM:100 - Guessed default value: -2016-05-05 17:16:02 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 17:16:02 DEBUG WPS2SM:149 - Machter find: true -2016-05-05 17:16:02 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-05 17:16:02 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-05 17:16:02 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-05 17:16:02 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-05 17:16:02 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-05 17:16:02 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-05 17:16:02 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-05 17:16:02 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 17:16:02 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-05 17:16:02 DEBUG SClient4WPS:656 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:16:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:16:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-05 17:16:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-05 17:16:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:16:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:16:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:16:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-05 17:16:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-05 17:16:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-05 17:16:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-05 17:16:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:16:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-05 17:16:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:16:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-05 17:16:03 INFO WorkspaceExplorerServiceImpl:138 - end time - 224 msc 0 sec -2016-05-05 17:16:03 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:06 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-05 17:16:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:16:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:16:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-05 17:16:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-05 17:16:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-05 17:16:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-05 17:16:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:16:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-05 17:16:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:16:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-05 17:16:06 INFO WorkspaceExplorerServiceImpl:138 - end time - 170 msc 0 sec -2016-05-05 17:16:06 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-05 17:16:14 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:14 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:16:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:14 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:16:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:14 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:16:14 DEBUG ServiceEngine:306 - get() - start -2016-05-05 17:16:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:14 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:14 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-05 17:16:14 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-05 17:16:14 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:16:14 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:16:14 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 17:16:14 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:16:14 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 17:16:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:14 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:14 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:16:14 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:16:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:14 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:16:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:16:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:14 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:16:14 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:16:14 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:16:14 INFO WorkspaceExplorerServiceImpl:178 - end time - 59 msc 0 sec -2016-05-05 17:16:14 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:16:14 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:16:14 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:14 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:16:14 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 17:16:14 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:14 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:14 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:16:14 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:16:15 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:16:15 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:306280}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1924799}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2939433, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2494359, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:15 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:16:15 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:15 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:15 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:15 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2183596}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=938161, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:15 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1597471}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1955379, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-05 17:16:15 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1924800}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1924800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG command:56 - Command execution completed -2016-05-05 17:16:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1924800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG command:56 - Command execution completed -2016-05-05 17:16:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1924800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG command:56 - Command execution completed -2016-05-05 17:16:15 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:16:15 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1924800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG command:56 - Command execution completed -2016-05-05 17:16:15 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1924800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG command:56 - Command execution completed -2016-05-05 17:16:15 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1924800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:15 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:16:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:15 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:16:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:15 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:15 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:15 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:16:15 DEBUG ServiceEngine:306 - get() - start -2016-05-05 17:16:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:15 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:15 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-05 17:16:15 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 17:16:15 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:16:15 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:16:15 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 17:16:15 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:16:15 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:16:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:15 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:15 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:16:15 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:16:15 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:16:15 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:16:15 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:15 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:15 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:15 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:16:15 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:16:15 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:16:15 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:306281}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1290956, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:15 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:16:15 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:15 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:15 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1924801}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=997495, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:15 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:15 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2183598}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1030897, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:16 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:16 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1924802}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1924802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1597472}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1215258, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-05 17:16:16 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:16 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:16 DEBUG command:56 - Command execution completed -2016-05-05 17:16:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1924802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 DEBUG command:56 - Command execution completed -2016-05-05 17:16:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1924802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:16:16 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:16:16 DEBUG command:56 - Command execution completed -2016-05-05 17:16:16 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:16:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1924802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 DEBUG command:56 - Command execution completed -2016-05-05 17:16:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1924802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 DEBUG command:56 - Command execution completed -2016-05-05 17:16:16 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1924802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 INFO WorkspaceExplorerServiceImpl:178 - end time - 40 msc 0 sec -2016-05-05 17:16:16 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:16 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:16:16 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:16:16 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:16:16 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 17:16:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-05 17:16:16 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:16:16 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:16 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:16 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:16 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:16 DEBUG query:56 - Query completed -2016-05-05 17:16:16 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:16:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:16 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-05 17:16:16 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2183596} -2016-05-05 17:16:16 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:306280} -2016-05-05 17:16:16 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1924800}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:16:16 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1597471} -2016-05-05 17:16:16 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1924800} -2016-05-05 17:16:16 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1924799} -2016-05-05 17:16:16 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:16:16 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:16:16 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:16:16 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-05 17:16:16 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:16:16 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:16:16 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:16:16 INFO WorkspaceExplorerServiceImpl:491 - returning size: 1951243 -2016-05-05 17:16:17 DEBUG query:56 - Query completed -2016-05-05 17:16:17 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-05 17:16:17 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2183598} -2016-05-05 17:16:17 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1924802}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:16:17 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1924802} -2016-05-05 17:16:17 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:306281} -2016-05-05 17:16:17 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1597472} -2016-05-05 17:16:17 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:16:17 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:16:17 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:16:17 INFO WorkspaceExplorerServiceImpl:491 - returning size: 3902486 -2016-05-05 17:16:17 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1924801} -2016-05-05 17:16:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:16:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:16:17 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-05 17:16:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:17 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:16:17 DEBUG ServiceEngine:193 - get() - start -2016-05-05 17:16:17 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:17 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:17 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-05 17:16:17 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:16:17 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:16:17 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:16:17 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-05 17:16:17 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:16:17 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:17 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:17 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:16:17 DEBUG Operation:173 - get(String) - start -2016-05-05 17:16:17 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:16:17 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:16:17 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:16:17 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:16:17 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:17 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:17 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:17 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:16:17 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:16:17 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:16:17 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1924803}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1815361, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:17 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:16:17 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:17 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:17 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:17 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2183599}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=864788, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:17 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:306282}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2203705, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:17 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1597473}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1592729, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-05 17:16:17 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1924804}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:17 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:19 DEBUG command:56 - Command execution completed -2016-05-05 17:16:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:19 DEBUG command:56 - Command execution completed -2016-05-05 17:16:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:19 DEBUG command:56 - Command execution completed -2016-05-05 17:16:19 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 17:16:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:19 DEBUG command:56 - Command execution completed -2016-05-05 17:16:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:19 DEBUG command:56 - Command execution completed -2016-05-05 17:16:19 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:16:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:19 DEBUG command:56 - Command execution completed -2016-05-05 17:16:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:19 DEBUG command:56 - Command execution completed -2016-05-05 17:16:19 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:16:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG query:56 - Query completed -2016-05-05 17:16:20 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-05 17:16:20 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 17:16:20 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-05 17:16:20 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG update:56 - Update completed -2016-05-05 17:16:20 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1924804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG query:56 - Query completed -2016-05-05 17:16:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:20 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:16:20 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-05 17:16:20 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-05 17:16:20 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-05 17:16:20 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:20 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:20 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-05 17:16:20 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:16:20 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-05 17:16:20 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:16:20 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-05 17:16:20 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-05 17:16:20 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:16:20 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:20 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:20 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:16:20 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:16:20 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:16:20 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:16:20 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:20 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:20 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:20 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:16:20 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:16:20 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:16:20 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:306288}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1924811}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2942038, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:20 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:16:20 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=18533641, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:20 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:20 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=18.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:20 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:2183604}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1075379, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=18.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:20 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:1597478}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1924814}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1924814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1245056, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=18.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-05 17:16:20 DEBUG command:56 - Command execution completed -2016-05-05 17:16:20 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1924814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG command:56 - Command execution completed -2016-05-05 17:16:20 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1924814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG command:56 - Command execution completed -2016-05-05 17:16:20 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:16:20 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:16:20 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1924814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG command:56 - Command execution completed -2016-05-05 17:16:20 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1924814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG command:56 - Command execution completed -2016-05-05 17:16:20 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:16:20 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1924814}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:20 DEBUG query:56 - Query completed -2016-05-05 17:16:20 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-05 17:16:20 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:2183604} -2016-05-05 17:16:20 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:306288} -2016-05-05 17:16:20 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:1597478} -2016-05-05 17:16:20 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1924814}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:16:20 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1924814} -2016-05-05 17:16:20 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:16:20 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1924811} -2016-05-05 17:16:20 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:16:20 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-05 17:16:20 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-05 17:16:20 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-05 17:16:20 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-05 17:16:20 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-05 17:16:20 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-05 17:16:20 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:23 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:23 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-05 17:16:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-05 17:16:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:16:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:16:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:16:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:16:23 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-05 17:16:23 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-05 17:16:23 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-05 17:16:23 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-05 17:16:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:16:23 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-05 17:16:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:16:23 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-05 17:16:23 INFO WorkspaceExplorerServiceImpl:138 - end time - 172 msc 0 sec -2016-05-05 17:16:23 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-05 17:16:26 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2183599} -2016-05-05 17:16:26 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1924804}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:16:26 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:306282} -2016-05-05 17:16:26 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1924804} -2016-05-05 17:16:26 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1597473} -2016-05-05 17:16:26 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1924803} -2016-05-05 17:16:32 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:32 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:16:32 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:16:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:16:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:32 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:16:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:33 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:16:33 DEBUG ServiceEngine:306 - get() - start -2016-05-05 17:16:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:33 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:33 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-05 17:16:33 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-05 17:16:33 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:16:33 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:16:33 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 17:16:33 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:16:33 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 17:16:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:33 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:33 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:16:33 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:16:33 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:16:33 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:16:33 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:33 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:33 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:33 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:16:33 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:16:33 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:16:33 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:306298}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1262848, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:33 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:16:33 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:33 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1924827}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1398497, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:33 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:33 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2183611}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1054129, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:33 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1924828}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1924828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:16:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:33 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1597485}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:33 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1374812, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-05 17:16:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:33 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:16:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:16:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:33 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:16:33 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:16:33 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:16:33 INFO WorkspaceExplorerServiceImpl:178 - end time - 53 msc 0 sec -2016-05-05 17:16:33 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:16:33 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 17:16:33 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1924828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1924828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:16:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1924828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1924828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1924828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:34 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:16:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:34 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:16:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:34 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:34 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:34 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:16:34 DEBUG ServiceEngine:306 - get() - start -2016-05-05 17:16:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:34 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:34 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-05 17:16:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 17:16:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:16:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:16:34 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 17:16:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:16:34 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:16:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:34 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:16:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:16:34 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:16:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:16:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:16:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:16:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:16:34 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:306305}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1099753, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:16:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:34 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1924835}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1454806, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:16:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:34 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:34 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2183615}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1012154, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:34 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:16:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:34 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:16:34 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1597489}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1318099, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:16:34 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:16:34 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1924836}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1924836}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:16:34 INFO WorkspaceExplorerServiceImpl:178 - end time - 62 msc 0 sec -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1924836}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1924836}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:16:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1924836}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1924836}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 DEBUG command:56 - Command execution completed -2016-05-05 17:16:34 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1924836}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:34 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:16:34 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:16:34 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 17:16:35 DEBUG query:56 - Query completed -2016-05-05 17:16:35 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2183611} -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:306298} -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1597485} -2016-05-05 17:16:35 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1924828}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1924828} -2016-05-05 17:16:35 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:16:35 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:16:35 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:16:35 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1924827} -2016-05-05 17:16:35 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:16:35 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:16:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:16:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:16:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:35 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:16:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:16:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:35 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:16:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:16:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:16:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:35 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:16:35 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:16:35 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:16:35 INFO WorkspaceExplorerServiceImpl:491 - returning size: 1951243 -2016-05-05 17:16:35 DEBUG query:56 - Query completed -2016-05-05 17:16:35 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2183615} -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:306305} -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1597489} -2016-05-05 17:16:35 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1924836}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1924836} -2016-05-05 17:16:35 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:16:35 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1924835} -2016-05-05 17:16:35 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:16:35 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:16:35 INFO WorkspaceExplorerServiceImpl:491 - returning size: 3902486 -2016-05-05 17:16:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:16:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:16:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:16:36 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-05 17:16:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:36 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:16:36 DEBUG ServiceEngine:193 - get() - start -2016-05-05 17:16:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:36 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:36 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-05 17:16:36 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:16:36 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:16:36 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:16:36 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-05 17:16:36 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:16:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:36 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:36 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:16:36 DEBUG Operation:173 - get(String) - start -2016-05-05 17:16:36 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:16:36 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:16:36 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:16:36 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:16:36 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:36 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:36 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:36 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:16:36 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:16:36 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:16:36 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1924837}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:306306}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1418257, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:36 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:16:36 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:36 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:36 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2335899, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:36 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2183616}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1027253, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:36 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1597491}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1858394, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-05 17:16:36 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1924838}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG command:56 - Command execution completed -2016-05-05 17:16:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG command:56 - Command execution completed -2016-05-05 17:16:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG command:56 - Command execution completed -2016-05-05 17:16:37 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 17:16:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG command:56 - Command execution completed -2016-05-05 17:16:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG command:56 - Command execution completed -2016-05-05 17:16:37 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:16:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG command:56 - Command execution completed -2016-05-05 17:16:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG command:56 - Command execution completed -2016-05-05 17:16:37 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:16:37 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG query:56 - Query completed -2016-05-05 17:16:37 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-05 17:16:37 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 17:16:37 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-05 17:16:37 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG update:56 - Update completed -2016-05-05 17:16:37 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1924838}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:37 DEBUG query:56 - Query completed -2016-05-05 17:16:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:16:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:16:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:16:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:16:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:16:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:16:37 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:16:37 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-05 17:16:37 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-05 17:16:37 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-05 17:16:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:37 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:37 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-05 17:16:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:16:37 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-05 17:16:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:16:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-05 17:16:37 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-05 17:16:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:16:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:16:37 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:16:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:16:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:16:37 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:16:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:16:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:16:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:16:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:16:38 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:306307}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1105816, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:38 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:16:38 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:38 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:16:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:38 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2183617}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1215364, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:38 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1924839}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1198560, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:38 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:16:38 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1597492}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1899105, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:16:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-05 17:16:38 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1924840}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1924840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG command:56 - Command execution completed -2016-05-05 17:16:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1924840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG command:56 - Command execution completed -2016-05-05 17:16:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1924840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG command:56 - Command execution completed -2016-05-05 17:16:38 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:16:38 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:16:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1924840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG command:56 - Command execution completed -2016-05-05 17:16:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1924840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG command:56 - Command execution completed -2016-05-05 17:16:38 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:16:38 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1924840}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:16:38 DEBUG query:56 - Query completed -2016-05-05 17:16:38 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-05 17:16:38 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2183617} -2016-05-05 17:16:38 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1597492} -2016-05-05 17:16:38 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:306307} -2016-05-05 17:16:38 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1924840}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:16:38 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1924840} -2016-05-05 17:16:38 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:16:38 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1924839} -2016-05-05 17:16:38 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:16:38 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-05 17:16:38 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-05 17:16:38 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-05 17:16:38 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-05 17:16:38 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-05 17:16:38 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-05 17:16:38 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-05 17:16:41 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:306306} -2016-05-05 17:16:41 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1924838}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:16:41 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1924838} -2016-05-05 17:16:41 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1597491} -2016-05-05 17:16:41 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2183616} -2016-05-05 17:16:41 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1924837} -2016-05-05 17:16:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:16:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:17:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:17:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:17:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:17:17 DEBUG DataMinerManagerServiceImpl:134 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=h1|h2, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-05 17:17:17 DEBUG WPS2SM:325 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-05 17:17:17 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-05 17:17:17 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-05 17:17:17 DEBUG WPS2SM:208 - Default Schema: null -2016-05-05 17:17:17 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-05 17:17:17 DEBUG WPS2SM:235 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 17:17:17 DEBUG WPS2SM:236 - Machter find: true -2016-05-05 17:17:17 DEBUG WPS2SM:237 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-05 17:17:17 DEBUG WPS2SM:239 - Machter start: 31 -2016-05-05 17:17:17 DEBUG WPS2SM:241 - Machter end: 97 -2016-05-05 17:17:17 DEBUG WPS2SM:242 - Machter Group Count: 1 -2016-05-05 17:17:17 DEBUG WPS2SM:245 - Matcher separator: | -2016-05-05 17:17:17 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-05 17:17:17 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-05 17:17:17 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 17:17:17 DEBUG SClient4WPS:683 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-05 17:17:17 DEBUG WPS2SM:300 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-05 17:17:17 DEBUG WPS2SM:92 - WPS type: -2016-05-05 17:17:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 17:17:17 DEBUG WPS2SM:100 - Guessed default value: -2016-05-05 17:17:17 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 17:17:17 DEBUG WPS2SM:149 - Machter find: true -2016-05-05 17:17:17 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-05 17:17:17 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-05 17:17:17 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-05 17:17:17 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-05 17:17:17 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-05 17:17:17 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-05 17:17:17 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-05 17:17:17 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 17:17:17 DEBUG SClient4WPS:683 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-05 17:17:17 DEBUG SClient4WPS:691 - UserInputs[key=HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0] -2016-05-05 17:17:17 DEBUG SClient4WPS:691 - UserInputs[key=HCAF_Table_Names, value=h1|h2] -2016-05-05 17:17:17 DEBUG SClient4WPS:744 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-05 17:17:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec in thread 32 -2016-05-05 17:17:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:17:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 17:17:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-05 17:17:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:17:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:17:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 17:17:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 16 ms -2016-05-05 17:17:17 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube/devsec/devVRE -2016-05-05 17:17:17 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-05 17:17:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:17:17 DEBUG StorageClient:517 - set scope: /gcube/devsec/devVRE -2016-05-05 17:17:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:17:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:17:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 17:17:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-05 17:17:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:17:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:17:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:17:17 DEBUG ServiceEngine:347 - put() - start -2016-05-05 17:17:17 INFO ServiceEngine:34 - file gCube parameter costructor: null null -2016-05-05 17:17:17 INFO ServiceEngine:44 - file gCube parameter before: null null -2016-05-05 17:17:17 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-05 17:17:17 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:17:17 DEBUG ServiceEngine:62 - path(String) - name: P_20160505_171717_15.xml -2016-05-05 17:17:17 DEBUG ServiceEngine:72 - path(String) - path: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/ -2016-05-05 17:17:17 INFO ServiceEngine:52 - file gCube parameter after: null null -2016-05-05 17:17:17 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:17:17 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:17:17 INFO OperationFactory:39 - getOperation(String) - start upload -2016-05-05 17:17:17 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:17:17 DEBUG DirectoryBucket:35 - DirectoryBucket PATH: /DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml -2016-05-05 17:17:17 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-05 17:17:17 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:17:17 DEBUG Upload:45 - UPLOAD null author: DataMiner -2016-05-05 17:17:17 DEBUG Operation:98 - put(MyFile, boolean, boolean) - start -2016-05-05 17:17:17 DEBUG Operation:104 - file size: 1 -2016-05-05 17:17:17 DEBUG Operation:108 - PUT is chukn? false -2016-05-05 17:17:17 DEBUG Operation:122 - put(MyFile, boolean, boolean) - encode length: 1 -2016-05-05 17:17:17 DEBUG Operation:128 - len File: 1 len chunk: 1 -2016-05-05 17:17:17 DEBUG Operation:131 - put(MyFile, boolean, boolean) - number of chunks: 1 -2016-05-05 17:17:17 DEBUG Operation:139 - put(MyFile, boolean, boolean) - number of thread: 1 -2016-05-05 17:17:17 DEBUG Operation:143 - consumer have a bucket name: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml -2016-05-05 17:17:17 DEBUG Operation:157 - NO THREAD POOL USED -2016-05-05 17:17:17 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:17:17 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:17:17 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:17:17 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:17:17 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:17 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:17 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:17 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:17:17 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:17:17 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:41, serverValue:306339}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1290225, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:18 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:17:18 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:18 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:44, serverValue:2183649}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=813758, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:42, serverValue:1924893}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1119204, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:18 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:43, serverValue:1597523}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1269901, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:45, serverValue:1924894}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG command:56 - Command execution completed -2016-05-05 17:17:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG command:56 - Command execution completed -2016-05-05 17:17:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG command:56 - Command execution completed -2016-05-05 17:17:18 INFO DefaultMongoClient:165 - MongoClient put method: OperationDefinition [operation=UPLOAD, localResource=INPUT_STREAM, remoteResource=PATH] -2016-05-05 17:17:18 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml -2016-05-05 17:17:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG command:56 - Command execution completed -2016-05-05 17:17:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG command:56 - Command execution completed -2016-05-05 17:17:18 INFO MongoIO:168 - remote object is not a validID : /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 INFO MongoIO:188 - object not found -2016-05-05 17:17:18 INFO DefaultMongoClient:189 - create new file /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG update:56 - Update completed -2016-05-05 17:17:18 DEBUG MongoIO:438 - Create new object with name: DataMiner dir: /VOLATILE/gcube/devsec/devVRE/public/ type= dir -2016-05-05 17:17:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG query:56 - Query completed -2016-05-05 17:17:18 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1924894}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:17:18 DEBUG update:56 - Update completed -2016-05-05 17:17:18 DEBUG MongoIO:438 - Create new object with name: AlgoritmsParameters dir: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/ type= dir -2016-05-05 17:17:18 DEBUG connection:56 - Closing connection connectionId{localValue:44, serverValue:2183649} -2016-05-05 17:17:18 DEBUG connection:56 - Closing connection connectionId{localValue:41, serverValue:306339} -2016-05-05 17:17:18 INFO connection:71 - Closed connection [connectionId{localValue:45, serverValue:1924894}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:17:18 DEBUG connection:56 - Closing connection connectionId{localValue:45, serverValue:1924894} -2016-05-05 17:17:18 DEBUG connection:56 - Closing connection connectionId{localValue:43, serverValue:1597523} -2016-05-05 17:17:18 DEBUG connection:56 - Closing connection connectionId{localValue:42, serverValue:1924893} -2016-05-05 17:17:18 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:17:18 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:17:18 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:18 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:18 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:17:18 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:17:18 INFO cluster:71 - No server chosen by ReadPreferenceServerSelector{readPreference=primaryPreferred} from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:46, serverValue:306341}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1343446, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:18 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:17:18 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:18 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:49, serverValue:2183651}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:47, serverValue:1924895}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1199023, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1574890, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:18 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:48, serverValue:1597525}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1270231, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:17:18 INFO connection:71 - Opened connection [connectionId{localValue:50, serverValue:306342}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:17:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:306342}] to server mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:17:21 DEBUG command:56 - Command execution completed -2016-05-05 17:17:21 INFO connection:71 - Opened connection [connectionId{localValue:51, serverValue:1924903}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:21 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:51, serverValue:1924903}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:21 DEBUG command:56 - Command execution completed -2016-05-05 17:17:21 INFO DefaultMongoClient:1491 - set last operation: UPLOAD -2016-05-05 17:17:21 DEBUG insert:56 - Inserting 1 documents into namespace remotefs.fs.chunks on connection [connectionId{localValue:51, serverValue:1924903}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG insert:56 - Insert completed -2016-05-05 17:17:24 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:51, serverValue:1924903}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG update:56 - Update completed -2016-05-05 17:17:24 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:51, serverValue:1924903}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG update:56 - Update completed -2016-05-05 17:17:24 DEBUG DefaultMongoClient:957 - Directory: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/ -2016-05-05 17:17:24 DEBUG DefaultMongoClient:960 - ObjectId: 572b640148434a65d0d98b89 -2016-05-05 17:17:24 INFO connection:71 - Closed connection [connectionId{localValue:50, serverValue:306342}] to mongo2-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:50, serverValue:306342} -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:49, serverValue:2183651} -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:46, serverValue:306341} -2016-05-05 17:17:24 INFO connection:71 - Closed connection [connectionId{localValue:51, serverValue:1924903}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:51, serverValue:1924903} -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:48, serverValue:1597525} -2016-05-05 17:17:24 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:47, serverValue:1924895} -2016-05-05 17:17:24 INFO DefaultMongoClient:863 - new file created with id: 572b640148434a65d0d98b89 -2016-05-05 17:17:24 INFO ServiceEngine:34 - file gCube parameter costructor: public /gcube/devsec/devVRE -2016-05-05 17:17:24 INFO ServiceEngine:44 - file gCube parameter before: public /gcube/devsec/devVRE -2016-05-05 17:17:24 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-05 17:17:24 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:17:24 DEBUG ServiceEngine:62 - path(String) - name: P_20160505_171717_15.xml -2016-05-05 17:17:24 DEBUG ServiceEngine:72 - path(String) - path: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/ -2016-05-05 17:17:24 INFO ServiceEngine:52 - file gCube parameter after: public /gcube/devsec/devVRE -2016-05-05 17:17:24 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:17:24 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= public file..getGcubeAccessType() public -2016-05-05 17:17:24 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-05 17:17:24 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:17:24 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-05 17:17:24 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:17:24 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:17:24 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:17:24 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:17:24 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:17:24 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:24 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:24 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:24 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c4d22eee, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2bc90535, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a74f108, socketFactory=javax.net.DefaultSocketFactory@737c51c9, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:17:24 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:17:24 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:17:24 INFO connection:71 - Opened connection [connectionId{localValue:52, serverValue:306348}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1204672, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:24 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:17:24 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:24 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:17:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:24 INFO connection:71 - Opened connection [connectionId{localValue:55, serverValue:2183657}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1031554, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:24 INFO connection:71 - Opened connection [connectionId{localValue:53, serverValue:1924908}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1195478, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:24 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:17:24 INFO connection:71 - Opened connection [connectionId{localValue:54, serverValue:1597531}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1515473, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:17:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:17:24 INFO connection:71 - Opened connection [connectionId{localValue:56, serverValue:1924911}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1924911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG command:56 - Command execution completed -2016-05-05 17:17:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1924911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG command:56 - Command execution completed -2016-05-05 17:17:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1924911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG command:56 - Command execution completed -2016-05-05 17:17:24 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml -2016-05-05 17:17:24 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml -2016-05-05 17:17:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1924911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG command:56 - Command execution completed -2016-05-05 17:17:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1924911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG command:56 - Command execution completed -2016-05-05 17:17:24 INFO MongoIO:168 - remote object is not a validID : /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml -2016-05-05 17:17:24 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:56, serverValue:1924911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:17:24 DEBUG query:56 - Query completed -2016-05-05 17:17:24 INFO MongoIO:186 - object found P_20160505_171717_15.xml -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:55, serverValue:2183657} -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:52, serverValue:306348} -2016-05-05 17:17:24 INFO connection:71 - Closed connection [connectionId{localValue:56, serverValue:1924911}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:54, serverValue:1597531} -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:56, serverValue:1924911} -2016-05-05 17:17:24 DEBUG connection:56 - Closing connection connectionId{localValue:53, serverValue:1924908} -2016-05-05 17:17:24 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:17:24 DEBUG Operation:81 - PATH /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_171717_15.xml -2016-05-05 17:17:24 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Aq0xC7gH84j+fHM/VqjZi8o9o8CGXWl0GmbP5+HKCzc= -2016-05-05 17:17:24 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Aq0xC7gH84j+fHM/VqjZi8o9o8CGXWl0GmbP5+HKCzc= -2016-05-05 17:17:24 DEBUG Operation:87 - translating: http://data-d.d4science.org/Aq0xC7gH84j+fHM/VqjZi8o9o8CGXWl0GmbP5+HKCzc= -2016-05-05 17:17:24 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-05 17:17:24 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Aq0xC7gH84j+fHM/VqjZi8o9o8CGXWl0GmbP5+HKCzc= -2016-05-05 17:17:24 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/QXEweEM3Z0g4NGorZkhNL1ZxalppOG85bzhDR1hXbDBHbWJQNStIS0N6Yz0 -2016-05-05 17:17:24 INFO Operation:65 - URL translated: http://data-d.d4science.org/QXEweEM3Z0g4NGorZkhNL1ZxalppOG85bzhDR1hXbDBHbWJQNStIS0N6Yz0 -2016-05-05 17:17:24 DEBUG StorageUtil:300 - Storage public link: http://data-d.d4science.org/QXEweEM3Z0g4NGorZkhNL1ZxalppOG85bzhDR1hXbDBHbWJQNStIS0N6Yz0 -2016-05-05 17:17:24 DEBUG SClient4WPS:727 - Configuring Literal: HCAF_Table_Names to: h1|h2 -2016-05-05 17:17:24 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 17:17:25 DEBUG SClient4WPS:388 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1|h2 - - - - - - - non_deterministic_output - - - - -2016-05-05 17:17:25 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-05 17:17:25 DEBUG SClient4WPS:415 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:17:25 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:17:25 DEBUG SClient4WPS:787 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:17:25 DEBUG SClient4WPS:697 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:17:25 DEBUG SClient4WPS:708 - ComputationId: ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:17:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:17:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:17:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:17:35 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:17:35 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:17:35 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:17:35 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:17:35 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:17:35 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:17:35 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:17:35 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:17:35 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:17:35 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:17:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:17:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:17:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:17:45 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:17:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:17:45 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:17:45 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:17:45 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:17:45 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:17:45 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:17:45 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:17:45 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:17:45 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:17:45 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:17:45 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:17:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:17:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:17:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:17:55 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:17:55 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:17:55 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:17:55 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:17:55 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:17:55 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:17:55 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:17:55 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:17:55 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:17:55 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:18:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:18:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:18:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:18:05 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:18:05 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:18:05 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:18:05 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:18:05 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:18:05 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:18:05 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:18:05 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:18:05 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:18:05 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:18:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:18:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:18:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:18:15 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:18:15 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:18:15 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:18:15 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:18:15 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:18:15 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:18:15 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:18:15 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:18:15 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:18:15 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:18:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:18:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:18:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:18:25 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:18:25 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:18:25 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:18:25 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:18:25 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:18:25 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:18:25 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:18:25 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:18:25 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:18:25 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:18:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:18:31 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:18:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:18:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:18:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:18:35 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:18:35 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:18:35 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:18:35 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:18:35 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:18:35 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:18:35 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:18:35 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:18:35 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:18:35 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:18:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:18:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:18:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:18:45 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:18:45 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:18:45 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:18:45 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:18:45 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:18:45 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:18:45 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:18:45 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:18:45 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:18:45 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:18:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:18:55 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:18:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:18:55 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:18:55 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:18:55 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:18:55 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:18:55 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:18:55 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:18:55 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:18:55 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:18:55 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:18:55 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:19:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:19:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:19:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:19:05 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:19:05 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:19:05 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:19:05 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:19:05 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:19:05 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:19:05 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:19:05 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:19:05 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:19:05 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:19:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:19:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:19:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:19:15 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:19:15 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:19:15 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:19:15 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:19:15 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:19:15 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:19:15 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:19:15 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:19:15 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:19:15 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:19:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:19:25 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:19:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:19:25 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:19:25 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:19:25 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:19:25 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:19:25 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:19:25 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:19:25 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:19:25 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:19:25 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:19:25 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:19:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:19:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:19:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:19:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:19:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:19:35 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:19:35 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:19:35 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:19:35 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:19:35 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:19:35 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:19:35 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:19:35 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:19:35 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:19:35 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:19:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:19:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:19:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:19:45 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:19:45 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:19:45 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:19:45 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:19:45 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:19:45 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:19:45 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:19:45 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:19:45 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:19:45 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:19:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:19:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:19:55 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:19:55 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:19:55 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:19:55 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:19:55 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:19:55 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:19:55 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:19:55 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:19:55 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:19:55 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:20:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:20:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:20:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:20:05 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:20:05 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:20:05 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:20:05 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:20:05 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:20:05 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:20:05 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:20:05 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:20:05 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:20:05 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:20:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:20:15 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:20:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:20:15 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:20:15 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:20:15 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:20:15 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:20:15 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:20:15 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:20:15 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:20:15 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:20:15 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:20:15 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:20:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:20:21 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:20:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:20:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:20:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:20:25 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:20:25 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:20:25 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:20:25 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:20:25 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:20:25 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:20:25 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:20:25 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:20:25 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:20:25 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:20:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:20:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:20:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:20:35 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:20:35 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:20:35 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:20:35 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:20:35 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:20:35 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:20:35 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:20:35 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:20:35 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:20:35 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:20:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:20:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:20:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:20:45 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:20:45 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:20:45 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:20:45 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:20:45 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:20:45 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:20:45 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:20:45 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:20:45 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:20:45 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:20:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:20:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:20:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:20:55 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:20:55 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:20:55 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:20:55 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:20:55 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:20:55 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:20:55 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:20:55 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:20:55 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:20:55 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:21:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:21:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:21:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:21:05 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:21:05 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:21:05 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:21:05 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:21:05 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:21:05 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:21:05 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:21:05 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:21:05 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:21:05 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:21:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:21:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:21:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:21:15 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:21:15 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:21:15 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:21:15 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:21:15 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:21:15 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:21:15 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:21:15 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:21:15 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:21:15 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:21:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 17:21:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 17:21:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:21:25 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:21:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:21:25 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:21:25 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:21:25 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:21:25 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:21:25 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:21:25 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:21:25 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:21:25 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:21:25 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:21:25 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:21:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:21:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:21:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:21:35 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:21:35 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:21:35 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:21:35 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:21:35 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:21:35 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:21:35 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:21:35 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:21:35 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:21:35 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-05 17:21:45 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-05 17:21:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:21:45 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:21:45 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:21:45 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:21:45 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:21:45 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:21:45 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:21:45 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:21:45 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:21:45 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:21:45 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:21:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:21:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:21:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:21:55 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce] -2016-05-05 17:21:55 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:21:55 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:21:55 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=0b06a4b0-90f5-4fe1-95be-aa432fddb7ce -2016-05-05 17:21:55 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:21:55 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:21:55 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:21:55 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:21:55 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:21:55 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:22:38 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-05 17:22:38 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-05 17:22:38 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-05 17:22:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 17:22:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 17:22:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:22:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 17:22:38 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6d564de1 -2016-05-05 17:22:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:22:38 INFO ASLSession:352 - Logging the entrance -2016-05-05 17:22:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 17:22:38 DEBUG TemplateModel:83 - 2016-05-05 17:22:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 17:22:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:22:38 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-05 17:22:40 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 17:22:40 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 17:22:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:22:40 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 17:22:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:40 INFO ASLSession:352 - Logging the entrance -2016-05-05 17:22:40 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 17:22:40 DEBUG TemplateModel:83 - 2016-05-05 17:22:40, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 17:22:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:22:40 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 17:22:40 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 131 ms -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-05 17:22:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-05 17:22:40 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-05 17:22:40 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:22:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 17:22:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@70e1e6ec -2016-05-05 17:22:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@770d014 -2016-05-05 17:22:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@2c4aa820 -2016-05-05 17:22:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@71143963 -2016-05-05 17:22:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 103 ms -2016-05-05 17:22:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-05 17:22:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-05 17:22:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:22:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-05 17:22:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-05 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:22:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-05 17:22:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-05 17:22:41 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-05 17:22:41 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:22:41 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-05 17:22:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 17:22:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 17:22:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 17:22:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:22:41 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:22:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:22:41 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-05 17:22:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:41 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-05 17:22:41 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-05 17:22:41 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-05 17:22:41 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-05 17:22:41 DEBUG JCRRepository:271 - Initialize repository -2016-05-05 17:22:41 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-05 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-05 17:22:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:22:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-05 17:22:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 18 ms -2016-05-05 17:22:41 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-05 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:22:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:41 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-05 17:22:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:41 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-05 17:22:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 17:22:42 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 17:22:42 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-05 17:22:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 17:22:42 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 17:22:42 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-05 17:22:42 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-05 17:22:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:22:42 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-05 17:22:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:22:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-05 17:22:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 17:22:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-05 17:22:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 17:22:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-05 17:22:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 17:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-05 17:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:43 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 17:22:43 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 17:22:43 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:22:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:43 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-05 17:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:43 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-05 17:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:43 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-05 17:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-05 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:22:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:22:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 17:22:44 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-05 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:22:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:22:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-05 17:22:44 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-05 17:22:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:22:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 17:22:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-05 17:22:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:44 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 17:22:44 INFO ISClientConnector:82 - found only one RR, take it -2016-05-05 17:22:44 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-05 17:22:44 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-05 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-05 17:22:44 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-05 17:22:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:22:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 17:22:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-05 17:22:44 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-05 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-05 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-05 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:22:44 INFO WorkspaceExplorerServiceImpl:178 - end time - 382 msc 0 sec -2016-05-05 17:22:44 INFO WorkspaceExplorerServiceImpl:178 - end time - 359 msc 0 sec -2016-05-05 17:22:44 INFO WorkspaceExplorerServiceImpl:178 - end time - 236 msc 0 sec -2016-05-05 17:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:22:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:22:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:22:50 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-05 17:22:50 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:22:50 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 17:22:50 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-05 17:22:50 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-05 17:22:50 DEBUG SClient4WPS:303 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-05 17:22:50 DEBUG SClient4WPS:303 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-05 17:22:51 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-05 17:22:51 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-05 17:22:51 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:22:51 DEBUG WPS2SM:325 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-05 17:22:51 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-05 17:22:51 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-05 17:22:51 DEBUG WPS2SM:208 - Default Schema: null -2016-05-05 17:22:51 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-05 17:22:51 DEBUG WPS2SM:235 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 17:22:51 DEBUG WPS2SM:236 - Machter find: true -2016-05-05 17:22:51 DEBUG WPS2SM:237 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-05 17:22:51 DEBUG WPS2SM:239 - Machter start: 31 -2016-05-05 17:22:51 DEBUG WPS2SM:241 - Machter end: 97 -2016-05-05 17:22:51 DEBUG WPS2SM:242 - Machter Group Count: 1 -2016-05-05 17:22:51 DEBUG WPS2SM:245 - Matcher separator: | -2016-05-05 17:22:51 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-05 17:22:51 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-05 17:22:51 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 17:22:51 DEBUG SClient4WPS:652 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-05 17:22:51 DEBUG WPS2SM:300 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-05 17:22:51 DEBUG WPS2SM:92 - WPS type: -2016-05-05 17:22:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 17:22:51 DEBUG WPS2SM:100 - Guessed default value: -2016-05-05 17:22:51 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 17:22:51 DEBUG WPS2SM:149 - Machter find: true -2016-05-05 17:22:51 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-05 17:22:51 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-05 17:22:51 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-05 17:22:51 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-05 17:22:51 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-05 17:22:51 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-05 17:22:51 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-05 17:22:51 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 17:22:51 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-05 17:22:51 DEBUG SClient4WPS:656 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:22:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:22:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:22:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:22:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-05 17:22:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-05 17:22:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:22:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:22:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:22:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:22:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:22:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:22:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:22:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-05 17:22:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-05 17:22:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-05 17:22:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-05 17:22:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:22:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-05 17:22:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:22:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-05 17:22:51 INFO WorkspaceExplorerServiceImpl:138 - end time - 181 msc 0 sec -2016-05-05 17:22:51 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-05 17:22:58 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:22:58 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:22:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:22:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:22:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:22:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:58 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:22:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:22:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:22:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:22:58 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:22:58 DEBUG ServiceEngine:306 - get() - start -2016-05-05 17:22:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:22:58 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:22:58 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-05 17:22:58 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-05 17:22:58 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:22:58 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:22:58 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 17:22:58 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:22:58 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 17:22:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:22:58 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:22:58 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:22:58 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:22:58 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:22:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:22:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:22:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:22:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:22:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:22:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:22:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:22:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:22:58 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:22:58 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:22:58 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:22:58 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:22:58 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:22:58 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:22:58 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:22:58 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:22:58 INFO WorkspaceExplorerServiceImpl:178 - end time - 62 msc 0 sec -2016-05-05 17:22:58 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:22:58 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:22:58 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:22:58 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 17:22:58 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:306540}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1924014, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:22:58 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:22:58 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:22:58 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:22:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:22:58 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2183815}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=892782, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:22:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:22:58 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1925160}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1878321, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:22:58 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:22:58 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1597689}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1504244, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:22:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:22:58 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1925161}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1925161}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:22:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:22:59 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:22:59 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:22:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:59 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:22:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:22:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:22:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:22:59 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:22:59 DEBUG ServiceEngine:306 - get() - start -2016-05-05 17:22:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:22:59 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:22:59 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-05 17:22:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 17:22:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:22:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:22:59 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 17:22:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:22:59 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:22:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:22:59 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:22:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:22:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:22:59 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:22:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:22:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:22:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:22:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:22:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:22:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:22:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:22:59 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1925162}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1616048, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:22:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:22:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:22:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:22:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:22:59 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2183816}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1132182, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:22:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:22:59 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:306541}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1531015, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:22:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:22:59 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1597690}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1451970, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:22:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:22:59 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1925163}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1925163}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:22:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:22:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:22:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:22:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:22:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:22:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:22:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:22:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:22:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:22:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:23:00 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:23:00 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:23:00 INFO WorkspaceExplorerServiceImpl:178 - end time - 66 msc 0 sec -2016-05-05 17:23:00 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:23:00 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:23:00 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:23:00 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:23:00 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1925163}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1925161}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1925161}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1925163}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:23:01 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:23:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1925163}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1925161}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1925161}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1925163}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG command:56 - Command execution completed -2016-05-05 17:23:01 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1925161}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:01 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1925163}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:02 DEBUG query:56 - Query completed -2016-05-05 17:23:02 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-05 17:23:02 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2183815} -2016-05-05 17:23:02 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1597689} -2016-05-05 17:23:02 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:306540} -2016-05-05 17:23:02 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1925161}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:23:02 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1925161} -2016-05-05 17:23:02 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1925160} -2016-05-05 17:23:02 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:23:02 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:23:02 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:23:02 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-05 17:23:03 DEBUG query:56 - Query completed -2016-05-05 17:23:03 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-05 17:23:03 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2183816} -2016-05-05 17:23:03 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:306541} -2016-05-05 17:23:03 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1597690} -2016-05-05 17:23:03 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1925163}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:23:03 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1925163} -2016-05-05 17:23:03 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1925162} -2016-05-05 17:23:03 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:23:03 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:23:03 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:23:03 INFO WorkspaceExplorerServiceImpl:491 - returning size: 3902486 -2016-05-05 17:23:03 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:23:03 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:23:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:23:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:23:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:23:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:03 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:23:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:23:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:23:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:23:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:03 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:23:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:23:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:03 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:23:03 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:23:03 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:23:03 INFO WorkspaceExplorerServiceImpl:491 - returning size: 1951243 -2016-05-05 17:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:23:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:23:04 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-05 17:23:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:04 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:23:04 DEBUG ServiceEngine:193 - get() - start -2016-05-05 17:23:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:04 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:04 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-05 17:23:04 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:23:04 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:23:04 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:23:04 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-05 17:23:04 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:23:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:04 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:04 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:23:04 DEBUG Operation:173 - get(String) - start -2016-05-05 17:23:04 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:23:04 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:23:04 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:23:04 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:23:04 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:04 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:04 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:04 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:23:04 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:23:04 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:23:04 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:306543}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2114269, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:04 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:23:04 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:04 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1925165}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:04 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1567581, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:04 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:04 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2183817}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2015314, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:04 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1597691}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1622490, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-05 17:23:05 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1925166}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-05 17:23:07 DEBUG command:56 - Command execution completed -2016-05-05 17:23:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:07 DEBUG command:56 - Command execution completed -2016-05-05 17:23:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:07 DEBUG command:56 - Command execution completed -2016-05-05 17:23:07 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 17:23:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:07 DEBUG command:56 - Command execution completed -2016-05-05 17:23:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:07 DEBUG command:56 - Command execution completed -2016-05-05 17:23:07 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:23:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:07 DEBUG command:56 - Command execution completed -2016-05-05 17:23:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:07 DEBUG command:56 - Command execution completed -2016-05-05 17:23:07 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:23:07 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:07 DEBUG query:56 - Query completed -2016-05-05 17:23:07 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-05 17:23:07 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 17:23:07 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-05 17:23:07 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:23:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:23:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:14 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-05 17:23:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:23:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-05 17:23:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:23:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:23:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:23:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:23:14 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:23:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:23:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:23:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:23:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:23:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:23:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:23:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:23:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:23:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 17:23:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:23:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 17:23:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-05 17:23:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-05 17:23:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-05 17:23:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-05 17:23:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:23:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-05 17:23:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-05 17:23:14 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-05 17:23:14 INFO WorkspaceExplorerServiceImpl:138 - end time - 182 msc 0 sec -2016-05-05 17:23:14 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-05 17:23:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-05 17:23:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-05 17:23:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-05 17:23:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-05 17:23:19 DEBUG update:56 - Update completed -2016-05-05 17:23:19 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1925166}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG query:56 - Query completed -2016-05-05 17:23:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-05 17:23:19 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-05 17:23:19 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-05 17:23:19 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-05 17:23:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:19 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:19 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-05 17:23:19 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:23:19 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-05 17:23:19 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:23:19 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-05 17:23:19 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-05 17:23:19 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:23:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:19 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:19 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:23:19 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:23:19 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:23:19 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:23:19 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:19 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:19 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:19 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:23:19 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:23:19 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:23:19 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:306546}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1354500, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:19 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:23:19 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:19 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:19 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1925168}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2183822}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1137835, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:19 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=887591, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:19 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1597696}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1315150, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:23:19 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1925169}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1925169}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG command:56 - Command execution completed -2016-05-05 17:23:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1925169}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG command:56 - Command execution completed -2016-05-05 17:23:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1925169}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG command:56 - Command execution completed -2016-05-05 17:23:19 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:23:19 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:23:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1925169}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG command:56 - Command execution completed -2016-05-05 17:23:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1925169}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG command:56 - Command execution completed -2016-05-05 17:23:19 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:23:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1925169}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:19 DEBUG query:56 - Query completed -2016-05-05 17:23:19 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-05 17:23:19 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2183822} -2016-05-05 17:23:19 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:306546} -2016-05-05 17:23:19 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1597696} -2016-05-05 17:23:19 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1925169}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:23:19 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1925169} -2016-05-05 17:23:19 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1925168} -2016-05-05 17:23:19 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:23:19 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-05 17:23:19 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-05 17:23:19 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-05 17:23:19 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-05 17:23:19 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-05 17:23:19 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-05 17:23:19 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-05 17:23:19 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-05 17:23:21 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:23:21 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:23:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:23:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:23:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:23:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:21 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:23:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:23:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:23:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:23:21 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:23:21 DEBUG ServiceEngine:306 - get() - start -2016-05-05 17:23:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:21 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:21 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-05 17:23:21 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-05 17:23:21 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:23:21 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:23:21 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 17:23:21 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:23:21 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 17:23:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:21 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:21 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:23:21 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:23:21 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:23:21 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:23:21 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:21 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:21 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:21 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:23:21 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:23:21 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:23:21 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:306578}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=11479300, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:21 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:23:21 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:21 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=11.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:21 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:2183845}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1925218}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1035211, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=11.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=3370466, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:21 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=11.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:23:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:23:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:23:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:21 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:23:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:23:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:23:21 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:1597719}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1454183, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=11.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:23:21 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:23:21 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-05 17:23:21 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1925219}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1925219}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 INFO WorkspaceExplorerServiceImpl:178 - end time - 51 msc 0 sec -2016-05-05 17:23:21 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:23:21 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:23:21 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 17:23:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=9.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:23:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=9.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:23:22 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:23:22 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:23:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:23:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:23:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:23:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:22 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:23:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:22 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:23:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:23:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:23:22 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:23:22 DEBUG ServiceEngine:306 - get() - start -2016-05-05 17:23:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:22 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:22 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-05 17:23:22 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-05 17:23:22 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:23:22 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:23:22 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-05 17:23:22 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:23:22 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:23:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:22 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:22 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:23:22 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:23:22 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:23:22 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:23:22 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:22 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:22 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:23:22 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:23:22 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:23:22 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:23:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:23:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:23:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:23:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:23:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-05 17:23:22 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:306579}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:22 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1925220}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1241242, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:22 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:23:22 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1372029, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:22 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:22 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:22 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2183846}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:23 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1925166}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:23:23 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1925166} -2016-05-05 17:23:23 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:306543} -2016-05-05 17:23:23 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1597691} -2016-05-05 17:23:23 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2183817} -2016-05-05 17:23:23 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:23:23 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1925165} -2016-05-05 17:23:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=16653792, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=16.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:23 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-05 17:23:23 INFO WorkspaceExplorerServiceImpl:178 - end time - 64 msc 0 sec -2016-05-05 17:23:23 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1597720}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:23 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1442693, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=16.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-05 17:23:23 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-05 17:23:23 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1925221}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1925221}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:23 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:23:23 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 17:23:23 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 17:23:23 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-05 17:23:23 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=16.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1925219}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1925221}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:23:24 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:23:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:23:24 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:23:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:23:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:24 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:23:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:23:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:24 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:23:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:24 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:23:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:24 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:23:24 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:23:24 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1925221}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1925219}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:23:24 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:23:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1925221}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1925219}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1925219}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1925221}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1925219}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 DEBUG command:56 - Command execution completed -2016-05-05 17:23:24 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1925221}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:24 INFO WorkspaceExplorerServiceImpl:491 - returning size: 1951243 -2016-05-05 17:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:23:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:23:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:23:25 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-05 17:23:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:25 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:23:25 DEBUG ServiceEngine:193 - get() - start -2016-05-05 17:23:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:25 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:25 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-05 17:23:25 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:23:25 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:23:25 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:23:25 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-05 17:23:25 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:23:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:25 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:25 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:23:25 DEBUG Operation:173 - get(String) - start -2016-05-05 17:23:25 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:23:25 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:23:25 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:23:25 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:23:25 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:25 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:25 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:25 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:23:25 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:23:25 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:23:25 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1925224}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=884942, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:25 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:23:25 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:25 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:25 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:25 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2183848}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=870541, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:25 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:306581}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2827481, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:25 DEBUG query:56 - Query completed -2016-05-05 17:23:25 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-05 17:23:25 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:2183845} -2016-05-05 17:23:25 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:1597719} -2016-05-05 17:23:25 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1925219}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:23:25 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1925219} -2016-05-05 17:23:25 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:306578} -2016-05-05 17:23:25 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:23:25 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1925218} -2016-05-05 17:23:25 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:23:25 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-05 17:23:25 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-05 17:23:25 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1597721}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1327310, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:23:25 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1925225}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:27 DEBUG command:56 - Command execution completed -2016-05-05 17:23:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:27 DEBUG command:56 - Command execution completed -2016-05-05 17:23:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:27 DEBUG command:56 - Command execution completed -2016-05-05 17:23:27 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 17:23:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:27 DEBUG command:56 - Command execution completed -2016-05-05 17:23:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:28 DEBUG command:56 - Command execution completed -2016-05-05 17:23:28 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:23:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:28 DEBUG command:56 - Command execution completed -2016-05-05 17:23:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:28 DEBUG command:56 - Command execution completed -2016-05-05 17:23:28 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:23:28 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:28 DEBUG query:56 - Query completed -2016-05-05 17:23:28 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-05 17:23:28 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-05 17:23:28 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-05 17:23:28 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:28 DEBUG query:56 - Query completed -2016-05-05 17:23:28 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-05 17:23:28 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2183846} -2016-05-05 17:23:28 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:306579} -2016-05-05 17:23:28 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1597720} -2016-05-05 17:23:28 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1925221}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:23:28 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1925221} -2016-05-05 17:23:28 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:23:28 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1925220} -2016-05-05 17:23:28 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:23:28 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-05 17:23:28 INFO WorkspaceExplorerServiceImpl:491 - returning size: 3902486 -2016-05-05 17:23:32 DEBUG update:56 - Update completed -2016-05-05 17:23:32 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1925225}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 DEBUG query:56 - Query completed -2016-05-05 17:23:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 17:23:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 17:23:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 17:23:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 17:23:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 17:23:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 17:23:32 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-05 17:23:32 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-05 17:23:32 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-05 17:23:32 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-05 17:23:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:32 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:32 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-05 17:23:32 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-05 17:23:32 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-05 17:23:32 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:23:32 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-05 17:23:32 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-05 17:23:32 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:23:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-05 17:23:32 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:32 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:23:32 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:23:32 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:23:32 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:23:32 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:32 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:32 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:32 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:23:32 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:23:32 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:23:32 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1925228}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1710133, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:32 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:23:32 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:32 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:32 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:32 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:306583}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1124857, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:32 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2183849}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=902010, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:32 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1597723}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1899054, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-05 17:23:32 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1925229}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1925229}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 DEBUG command:56 - Command execution completed -2016-05-05 17:23:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1925229}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:32 DEBUG command:56 - Command execution completed -2016-05-05 17:23:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1925229}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:23:35 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:23:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:23:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:23:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-05 17:23:35 DEBUG command:56 - Command execution completed -2016-05-05 17:23:35 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:23:35 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:23:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1925229}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:35 DEBUG command:56 - Command execution completed -2016-05-05 17:23:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1925229}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:35 DEBUG command:56 - Command execution completed -2016-05-05 17:23:35 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:23:35 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1925229}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:35 DEBUG query:56 - Query completed -2016-05-05 17:23:35 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-05 17:23:35 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2183849} -2016-05-05 17:23:35 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:306583} -2016-05-05 17:23:35 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1925229}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:23:35 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1925229} -2016-05-05 17:23:35 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1597723} -2016-05-05 17:23:35 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:23:35 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1925228} -2016-05-05 17:23:35 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-05 17:23:35 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-05 17:23:35 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-05 17:23:35 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-05 17:23:35 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-05 17:23:35 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-05 17:23:35 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-05 17:23:35 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-05 17:23:40 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2183848} -2016-05-05 17:23:40 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1597721} -2016-05-05 17:23:40 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:306581} -2016-05-05 17:23:40 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1925225}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:23:40 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1925225} -2016-05-05 17:23:40 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1925224} -2016-05-05 17:23:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:23:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:23:44 DEBUG DataMinerManagerServiceImpl:134 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=h1|h2, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-05 17:23:44 DEBUG WPS2SM:325 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-05 17:23:44 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-05 17:23:44 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-05 17:23:44 DEBUG WPS2SM:208 - Default Schema: null -2016-05-05 17:23:44 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-05 17:23:44 DEBUG WPS2SM:235 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 17:23:44 DEBUG WPS2SM:236 - Machter find: true -2016-05-05 17:23:44 DEBUG WPS2SM:237 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-05 17:23:44 DEBUG WPS2SM:239 - Machter start: 31 -2016-05-05 17:23:44 DEBUG WPS2SM:241 - Machter end: 97 -2016-05-05 17:23:44 DEBUG WPS2SM:242 - Machter Group Count: 1 -2016-05-05 17:23:44 DEBUG WPS2SM:245 - Matcher separator: | -2016-05-05 17:23:44 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-05 17:23:44 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-05 17:23:44 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 17:23:44 DEBUG SClient4WPS:683 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-05 17:23:44 DEBUG WPS2SM:300 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-05 17:23:44 DEBUG WPS2SM:92 - WPS type: -2016-05-05 17:23:44 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-05 17:23:44 DEBUG WPS2SM:100 - Guessed default value: -2016-05-05 17:23:44 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-05 17:23:44 DEBUG WPS2SM:149 - Machter find: true -2016-05-05 17:23:44 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-05 17:23:44 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-05 17:23:44 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-05 17:23:44 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-05 17:23:44 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-05 17:23:44 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-05 17:23:44 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-05 17:23:44 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-05 17:23:44 DEBUG SClient4WPS:683 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-05 17:23:44 DEBUG SClient4WPS:691 - UserInputs[key=HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0] -2016-05-05 17:23:44 DEBUG SClient4WPS:691 - UserInputs[key=HCAF_Table_Names, value=h1|h2] -2016-05-05 17:23:44 DEBUG SClient4WPS:744 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-05 17:23:44 DEBUG StorageUtil:291 - SaveOnStorageInTemporalFile() -2016-05-05 17:23:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec in thread 36 -2016-05-05 17:23:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:23:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 17:23:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-05 17:23:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:23:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 17:23:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 25 ms -2016-05-05 17:23:44 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube/devsec/devVRE -2016-05-05 17:23:44 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-05 17:23:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:44 DEBUG StorageClient:517 - set scope: /gcube/devsec/devVRE -2016-05-05 17:23:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 17:23:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 17:23:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-05 17:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:23:45 DEBUG ServiceEngine:347 - put() - start -2016-05-05 17:23:45 INFO ServiceEngine:34 - file gCube parameter costructor: null null -2016-05-05 17:23:45 INFO ServiceEngine:44 - file gCube parameter before: null null -2016-05-05 17:23:45 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-05 17:23:45 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:45 DEBUG ServiceEngine:62 - path(String) - name: P_20160505_172344_74.xml -2016-05-05 17:23:45 DEBUG ServiceEngine:72 - path(String) - path: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/ -2016-05-05 17:23:45 INFO ServiceEngine:52 - file gCube parameter after: null null -2016-05-05 17:23:45 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:23:45 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-05 17:23:45 INFO OperationFactory:39 - getOperation(String) - start upload -2016-05-05 17:23:45 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:23:45 DEBUG DirectoryBucket:35 - DirectoryBucket PATH: /DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml -2016-05-05 17:23:45 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-05 17:23:45 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:23:45 DEBUG Upload:45 - UPLOAD null author: DataMiner -2016-05-05 17:23:45 DEBUG Operation:98 - put(MyFile, boolean, boolean) - start -2016-05-05 17:23:45 DEBUG Operation:104 - file size: 1 -2016-05-05 17:23:45 DEBUG Operation:108 - PUT is chukn? false -2016-05-05 17:23:45 DEBUG Operation:122 - put(MyFile, boolean, boolean) - encode length: 1 -2016-05-05 17:23:45 DEBUG Operation:128 - len File: 1 len chunk: 1 -2016-05-05 17:23:45 DEBUG Operation:131 - put(MyFile, boolean, boolean) - number of chunks: 1 -2016-05-05 17:23:45 DEBUG Operation:139 - put(MyFile, boolean, boolean) - number of thread: 1 -2016-05-05 17:23:45 DEBUG Operation:143 - consumer have a bucket name: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml -2016-05-05 17:23:45 DEBUG Operation:157 - NO THREAD POOL USED -2016-05-05 17:23:45 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:23:45 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:23:45 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:23:45 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:23:45 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:45 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:45 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:45 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:23:45 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:23:45 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:23:45 INFO connection:71 - Opened connection [connectionId{localValue:41, serverValue:306590}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1062466, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:45 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:23:45 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:45 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:45 INFO connection:71 - Opened connection [connectionId{localValue:42, serverValue:1925238}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 INFO connection:71 - Opened connection [connectionId{localValue:44, serverValue:2183857}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=729926, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1270697, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:45 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:45 INFO connection:71 - Opened connection [connectionId{localValue:43, serverValue:1597732}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1792585, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-05 17:23:45 INFO connection:71 - Opened connection [connectionId{localValue:45, serverValue:1925239}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-05 17:23:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-05 17:23:46 DEBUG command:56 - Command execution completed -2016-05-05 17:23:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG command:56 - Command execution completed -2016-05-05 17:23:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG command:56 - Command execution completed -2016-05-05 17:23:46 INFO DefaultMongoClient:165 - MongoClient put method: OperationDefinition [operation=UPLOAD, localResource=INPUT_STREAM, remoteResource=PATH] -2016-05-05 17:23:46 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml -2016-05-05 17:23:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG command:56 - Command execution completed -2016-05-05 17:23:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG command:56 - Command execution completed -2016-05-05 17:23:46 INFO MongoIO:168 - remote object is not a validID : /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 INFO MongoIO:188 - object not found -2016-05-05 17:23:46 INFO DefaultMongoClient:189 - create new file /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1925239}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG query:56 - Query completed -2016-05-05 17:23:46 DEBUG connection:56 - Closing connection connectionId{localValue:44, serverValue:2183857} -2016-05-05 17:23:46 DEBUG connection:56 - Closing connection connectionId{localValue:41, serverValue:306590} -2016-05-05 17:23:46 INFO connection:71 - Closed connection [connectionId{localValue:45, serverValue:1925239}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:23:46 DEBUG connection:56 - Closing connection connectionId{localValue:45, serverValue:1925239} -2016-05-05 17:23:46 DEBUG connection:56 - Closing connection connectionId{localValue:43, serverValue:1597732} -2016-05-05 17:23:46 DEBUG connection:56 - Closing connection connectionId{localValue:42, serverValue:1925238} -2016-05-05 17:23:46 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:23:46 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:23:46 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:46 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:46 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:46 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:23:46 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:23:46 INFO cluster:71 - No server chosen by ReadPreferenceServerSelector{readPreference=primaryPreferred} from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:23:46 INFO connection:71 - Opened connection [connectionId{localValue:46, serverValue:306591}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3353856, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:46 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:23:46 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:46 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:23:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:46 INFO connection:71 - Opened connection [connectionId{localValue:47, serverValue:1925241}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1497686, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:46 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:46 INFO connection:71 - Opened connection [connectionId{localValue:49, serverValue:2183859}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:46 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1101701, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:23:47 INFO connection:71 - Opened connection [connectionId{localValue:48, serverValue:1597733}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1113633, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:23:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-05 17:23:47 INFO connection:71 - Opened connection [connectionId{localValue:50, serverValue:306592}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:47 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:306592}] to server mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:23:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:23:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-05 17:23:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:23:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-05 17:23:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-05 17:23:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:23:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-05 17:24:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:24:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-05 17:24:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:24:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-05 17:24:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-05 17:24:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:24:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:24:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:24:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:24:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:24:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:24:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-05 17:24:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:24:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-05 17:24:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:24:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:24:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-05 17:24:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-05 17:24:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-05 17:24:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:24:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:24:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:24:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:24:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:24:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:24:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:24:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:24:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:24:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:24:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-05 17:24:37 DEBUG command:56 - Command execution completed -2016-05-05 17:24:37 INFO connection:71 - Opened connection [connectionId{localValue:51, serverValue:1925273}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:51, serverValue:1925273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:37 DEBUG command:56 - Command execution completed -2016-05-05 17:24:37 INFO DefaultMongoClient:1491 - set last operation: UPLOAD -2016-05-05 17:24:37 DEBUG insert:56 - Inserting 1 documents into namespace remotefs.fs.chunks on connection [connectionId{localValue:51, serverValue:1925273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 DEBUG insert:56 - Insert completed -2016-05-05 17:24:41 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:51, serverValue:1925273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 DEBUG update:56 - Update completed -2016-05-05 17:24:41 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:51, serverValue:1925273}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 DEBUG update:56 - Update completed -2016-05-05 17:24:41 DEBUG DefaultMongoClient:957 - Directory: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/ -2016-05-05 17:24:41 DEBUG DefaultMongoClient:960 - ObjectId: 572b65b548434a672cb60b61 -2016-05-05 17:24:41 INFO connection:71 - Closed connection [connectionId{localValue:50, serverValue:306592}] to mongo2-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:24:41 DEBUG connection:56 - Closing connection connectionId{localValue:50, serverValue:306592} -2016-05-05 17:24:41 DEBUG connection:56 - Closing connection connectionId{localValue:49, serverValue:2183859} -2016-05-05 17:24:41 DEBUG connection:56 - Closing connection connectionId{localValue:46, serverValue:306591} -2016-05-05 17:24:41 INFO connection:71 - Closed connection [connectionId{localValue:51, serverValue:1925273}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:24:41 DEBUG connection:56 - Closing connection connectionId{localValue:48, serverValue:1597733} -2016-05-05 17:24:41 DEBUG connection:56 - Closing connection connectionId{localValue:51, serverValue:1925273} -2016-05-05 17:24:41 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:24:41 DEBUG connection:56 - Closing connection connectionId{localValue:47, serverValue:1925241} -2016-05-05 17:24:41 INFO DefaultMongoClient:863 - new file created with id: 572b65b548434a672cb60b61 -2016-05-05 17:24:41 DEBUG StorageUtil:300 - Storage id: 572b65b548434a672cb60b61 -2016-05-05 17:24:41 INFO ServiceEngine:34 - file gCube parameter costructor: public /gcube/devsec/devVRE -2016-05-05 17:24:41 INFO ServiceEngine:44 - file gCube parameter before: public /gcube/devsec/devVRE -2016-05-05 17:24:41 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-05 17:24:41 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:24:41 DEBUG ServiceEngine:62 - path(String) - name: P_20160505_172344_74.xml -2016-05-05 17:24:41 DEBUG ServiceEngine:72 - path(String) - path: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/ -2016-05-05 17:24:41 INFO ServiceEngine:52 - file gCube parameter after: public /gcube/devsec/devVRE -2016-05-05 17:24:41 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-05 17:24:41 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= public file..getGcubeAccessType() public -2016-05-05 17:24:41 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-05 17:24:41 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-05 17:24:41 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-05 17:24:41 DEBUG BucketCoding:42 - coding name done -2016-05-05 17:24:41 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-05 17:24:41 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-05 17:24:41 DEBUG MongoIO:77 - open mongo connection -2016-05-05 17:24:41 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-05 17:24:41 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:24:41 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:24:41 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:24:41 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5722c8c7, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5986b794, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1b7e8377, socketFactory=javax.net.DefaultSocketFactory@ee907bb, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-05 17:24:41 INFO MongoIO:106 - new mongo connection pool opened -2016-05-05 17:24:41 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-05 17:24:41 INFO connection:71 - Opened connection [connectionId{localValue:53, serverValue:1925305}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=5424709, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:24:41 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-05 17:24:41 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:24:41 INFO connection:71 - Opened connection [connectionId{localValue:52, serverValue:306636}] to mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-05 17:24:41 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:24:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2498176, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:24:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:24:41 INFO connection:71 - Opened connection [connectionId{localValue:55, serverValue:2183892}] to mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=818487, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:24:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-05 17:24:41 INFO connection:71 - Opened connection [connectionId{localValue:56, serverValue:1925307}] to mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1925307}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 INFO connection:71 - Opened connection [connectionId{localValue:54, serverValue:1597767}] to mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-05 17:24:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1553788, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-05 17:24:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-05 17:24:42 DEBUG command:56 - Command execution completed -2016-05-05 17:24:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1925307}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:42 DEBUG command:56 - Command execution completed -2016-05-05 17:24:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1925307}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:42 DEBUG command:56 - Command execution completed -2016-05-05 17:24:42 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml -2016-05-05 17:24:42 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml -2016-05-05 17:24:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1925307}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:42 DEBUG command:56 - Command execution completed -2016-05-05 17:24:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:56, serverValue:1925307}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:42 DEBUG command:56 - Command execution completed -2016-05-05 17:24:42 INFO MongoIO:168 - remote object is not a validID : /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml -2016-05-05 17:24:42 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:56, serverValue:1925307}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-05 17:24:42 DEBUG query:56 - Query completed -2016-05-05 17:24:42 INFO MongoIO:186 - object found P_20160505_172344_74.xml -2016-05-05 17:24:42 DEBUG connection:56 - Closing connection connectionId{localValue:55, serverValue:2183892} -2016-05-05 17:24:42 DEBUG connection:56 - Closing connection connectionId{localValue:52, serverValue:306636} -2016-05-05 17:24:42 INFO connection:71 - Closed connection [connectionId{localValue:56, serverValue:1925307}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-05 17:24:42 DEBUG connection:56 - Closing connection connectionId{localValue:56, serverValue:1925307} -2016-05-05 17:24:42 DEBUG connection:56 - Closing connection connectionId{localValue:54, serverValue:1597767} -2016-05-05 17:24:42 INFO MongoIO:508 - Mongo has been closed -2016-05-05 17:24:42 DEBUG connection:56 - Closing connection connectionId{localValue:53, serverValue:1925305} -2016-05-05 17:24:42 DEBUG Operation:81 - PATH /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160505_172344_74.xml -2016-05-05 17:24:42 INFO Operation:55 - URL generated: smp://data-d.d4science.org/q0Rhfy1Dm1j5FYtpis6GFO31iRDxZag0GmbP5+HKCzc= -2016-05-05 17:24:42 INFO Operation:57 - URL generated: smp://data-d.d4science.org/q0Rhfy1Dm1j5FYtpis6GFO31iRDxZag0GmbP5+HKCzc= -2016-05-05 17:24:42 DEBUG Operation:87 - translating: http://data-d.d4science.org/q0Rhfy1Dm1j5FYtpis6GFO31iRDxZag0GmbP5+HKCzc= -2016-05-05 17:24:42 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-05 17:24:42 DEBUG Operation:93 - get params: http://data-d.d4science.org/ q0Rhfy1Dm1j5FYtpis6GFO31iRDxZag0GmbP5+HKCzc= -2016-05-05 17:24:42 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/cTBSaGZ5MURtMWo1Rll0cGlzNkdGTzMxaVJEeFphZzBHbWJQNStIS0N6Yz0 -2016-05-05 17:24:42 INFO Operation:65 - URL translated: http://data-d.d4science.org/cTBSaGZ5MURtMWo1Rll0cGlzNkdGTzMxaVJEeFphZzBHbWJQNStIS0N6Yz0 -2016-05-05 17:24:42 DEBUG StorageUtil:302 - Storage public link: http://data-d.d4science.org/cTBSaGZ5MURtMWo1Rll0cGlzNkdGTzMxaVJEeFphZzBHbWJQNStIS0N6Yz0 -2016-05-05 17:24:42 DEBUG SClient4WPS:727 - Configuring Literal: HCAF_Table_Names to: h1|h2 -2016-05-05 17:24:42 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 17:24:43 DEBUG SClient4WPS:388 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1|h2 - - - - - - - non_deterministic_output - - - - -2016-05-05 17:24:43 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-05 17:24:43 DEBUG SClient4WPS:415 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:24:43 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 17:24:43 DEBUG SClient4WPS:787 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:24:43 DEBUG SClient4WPS:697 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:24:43 DEBUG SClient4WPS:708 - ComputationId: ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:24:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:24:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:24:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:24:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:24:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:24:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:24:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:24:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:24:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:24:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:24:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:24:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:24:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:25:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:25:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:25:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:25:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:25:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:25:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:25:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:25:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:25:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:25:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:25:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:25:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:25:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:25:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:25:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:25:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:25:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:25:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:25:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:25:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:25:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:25:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:25:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:25:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:25:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:25:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:25:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:25:23 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:25:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:25:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:25:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:25:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:25:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:25:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:25:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:25:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:25:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:25:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:25:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:25:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:25:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:25:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:25:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:25:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:25:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:25:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:25:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:25:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:25:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:25:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:25:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:25:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:25:33 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:25:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:25:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:25:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:25:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:25:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:25:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:25:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:25:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:25:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:25:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:25:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:25:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:25:43 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:25:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:25:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:25:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:25:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:25:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:25:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:25:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:25:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:25:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:25:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:25:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:25:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:25:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:25:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:26:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:26:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:26:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:26:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:26:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:26:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:26:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:26:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:26:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:26:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:26:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:26:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:26:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:26:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:26:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:26:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:26:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:26:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:26:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:26:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:26:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:26:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:26:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:26:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:26:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:26:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:26:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:26:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:26:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:26:23 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:26:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:26:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:26:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:26:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:26:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:26:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:26:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:26:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:26:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:26:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:26:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:26:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:26:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:26:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:26:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:26:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:26:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:26:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:26:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:26:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:26:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:26:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:26:33 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:26:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:26:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:26:43 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:26:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:26:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:26:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:26:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:26:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:26:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:26:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:26:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:26:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:26:43 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:26:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:26:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:26:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:26:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:26:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:26:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:26:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:26:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:26:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:26:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:26:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:26:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:26:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:26:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:27:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:27:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:27:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:27:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:27:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:27:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:27:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:27:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:27:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:27:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:27:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:27:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:27:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:27:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:27:13 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:27:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:27:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:27:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:27:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:27:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:27:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:27:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:27:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:27:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:27:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:27:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:27:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:27:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:27:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:27:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:27:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:27:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:27:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:27:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:27:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:27:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:27:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:27:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:27:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:27:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:27:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:27:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:27:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:27:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:27:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:27:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:27:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:27:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:27:33 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:27:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:27:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:27:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:27:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:27:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:27:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:27:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:27:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:27:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:27:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:27:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:27:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:27:43 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:27:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:27:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:27:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:27:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:27:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:27:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:27:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:27:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:27:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:27:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:27:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:27:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:27:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:27:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:28:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:28:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:28:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:28:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:28:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:28:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:28:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:28:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:28:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:28:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:28:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:28:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:28:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:28:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:28:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:28:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:28:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:28:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:28:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:28:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:28:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:28:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:28:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:28:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:28:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:28:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:28:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:28:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:28:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:28:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:28:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:28:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:28:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:28:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:28:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:28:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:28:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:28:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:28:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:28:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:28:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:28:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:28:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:28:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:28:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:28:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:28:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:28:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:28:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:28:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:28:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:28:33 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:28:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:28:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:28:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:28:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:28:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:28:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:28:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:28:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:28:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:28:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:28:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:28:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:28:43 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:28:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:28:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:28:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:28:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:28:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:28:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:28:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:28:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:28:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:28:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:28:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:28:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:28:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:28:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:29:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:29:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:29:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:29:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:29:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:29:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:29:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:29:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:29:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:29:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:29:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:29:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:29:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:29:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:29:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:29:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:29:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:29:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:29:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:29:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:29:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:29:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:29:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:29:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:29:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:29:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:29:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:29:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:29:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:29:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:29:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:29:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:29:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:29:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:29:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:29:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:29:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:29:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:29:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:29:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:29:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:29:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:29:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:29:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:29:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:29:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:29:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:29:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:29:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:29:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:29:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:29:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:29:33 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:29:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:29:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:29:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:29:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:29:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:29:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:29:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:29:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:29:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:29:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:29:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:29:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:29:43 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:29:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:29:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:29:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:29:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:29:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:29:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:29:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:29:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:29:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:29:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:29:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:29:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:29:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:29:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:29:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:29:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:30:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:30:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:30:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:30:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:30:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:30:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:30:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:30:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:30:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:30:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:30:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:30:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:30:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:30:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:30:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:30:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:30:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:30:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:30:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:30:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:30:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:30:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:30:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:30:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:30:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:30:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:30:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:30:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:30:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:30:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:30:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:30:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:30:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:30:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:30:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:30:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:30:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:30:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:30:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:30:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:30:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:30:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:30:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:30:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:30:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:30:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:30:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:30:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:30:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:30:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:30:33 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:30:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:30:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:30:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:30:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:30:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:30:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:30:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:30:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:30:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:30:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:30:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:30:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:30:43 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:30:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:30:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:30:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:30:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:30:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:30:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:30:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:30:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:30:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:30:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:30:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:30:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:30:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:30:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:30:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:30:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:31:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:31:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:31:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:31:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:31:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:31:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:31:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:31:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:31:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:31:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:31:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:31:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:31:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:31:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:31:13 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:31:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:31:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:31:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:31:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:31:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:31:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:31:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:31:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:31:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:31:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:31:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:31:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:31:23 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:31:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:31:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:31:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:31:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:31:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:31:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:31:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:31:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:31:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:31:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:31:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:31:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:31:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:31:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:31:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:31:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:31:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:31:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:31:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:31:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:31:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:31:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:31:33 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:31:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:31:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:31:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:31:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:31:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:31:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:31:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:31:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:31:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:31:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:31:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:31:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:31:43 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:31:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:31:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:31:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:31:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:31:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:31:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:31:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:31:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:31:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:31:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:31:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:31:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:31:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:31:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:31:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:31:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:32:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:32:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:32:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:32:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:32:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:32:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:32:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:32:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:32:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:32:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:32:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:32:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:32:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:32:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:32:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:32:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:32:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:32:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:32:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:32:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:32:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:32:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:32:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:32:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:32:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:32:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:32:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:32:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:32:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:32:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:32:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:32:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:32:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:32:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:32:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:32:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:32:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:32:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:32:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:32:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:32:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:32:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:32:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:32:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:32:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:32:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:32:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:32:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:32:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:32:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:32:33 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:32:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:32:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:32:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:32:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:32:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:32:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:32:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:32:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:32:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:32:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:32:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:32:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:32:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:32:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:32:43 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:32:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:32:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:32:53 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:32:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:32:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:32:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:32:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:32:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:32:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:32:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:32:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:32:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:32:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:32:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:33:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:33:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:33:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:33:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:33:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:33:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:33:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:33:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:33:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:33:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:33:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:33:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:33:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:33:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:33:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:33:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:33:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:33:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:33:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:33:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:33:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:33:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:33:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:33:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:33:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:33:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:33:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:33:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:33:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:33:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:33:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:33:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:33:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:33:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:33:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:33:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:33:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:33:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:33:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:33:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:33:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:33:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:33:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:33:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:33:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:33:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:33:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:33:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:33:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:33:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:33:33 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:33:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:33:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:33:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:33:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:33:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:33:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:33:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:33:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:33:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:33:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:33:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:33:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:33:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:33:43 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:33:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:33:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:33:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:33:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:33:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:33:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:33:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:33:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:33:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:33:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:33:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:33:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:33:53 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:33:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:34:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:34:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:34:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:34:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:34:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:34:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:34:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:34:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:34:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:34:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:34:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:34:03 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:34:03 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:34:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:34:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:34:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:34:13 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:34:13 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:34:13 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:34:13 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:34:13 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:34:13 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:34:13 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:34:13 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - -2016-05-05 17:34:13 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-05 17:34:13 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-05 17:34:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:34:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:34:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 17:34:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=fc97d7d8-198d-402c-bdf8-d2913da66f0b, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b] -2016-05-05 17:34:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-05 17:34:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-05 17:34:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=fc97d7d8-198d-402c-bdf8-d2913da66f0b -2016-05-05 17:34:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 17:34:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-05 17:34:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-05 17:34:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - - - - java.lang.RuntimeException: Server returned HTTP response code: 502 for URL: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 - - - - - -2016-05-05 17:34:23 DEBUG SClient4WPS:862 - WPS FAILURE: - - java.lang.RuntimeException: Server returned HTTP response code: 502 for URL: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 - - OR PAUSED: null -2016-05-05 17:34:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=100.0, status=FAILED, endDate=null, message=null, errResource=null] -2016-05-05 17:34:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:34:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:35:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 17:35:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 17:36:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:36:23 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:37:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:37:18 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:38:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:38:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:39:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:39:08 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:40:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:40:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:40:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:40:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:41:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:41:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:42:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:42:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:43:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:43:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:44:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:44:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:45:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:45:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:46:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:46:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:47:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:47:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:48:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 17:48:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 17:49:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 17:49:13 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:50:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 17:50:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 17:51:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 17:51:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 17:51:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 17:52:53 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 17:52:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 17:52:53 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 17:52:53 WARN SessionCheckerServiceImpl:80 - Scope is null at Thu May 05 17:52:53 CEST 2016 -2016-05-05 17:52:53 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 18:24:38 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-05 18:24:38 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-05 18:24:38 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-05 18:24:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 18:24:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 18:24:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:24:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 18:24:38 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6a010c1c -2016-05-05 18:24:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:24:38 INFO ASLSession:352 - Logging the entrance -2016-05-05 18:24:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 18:24:38 DEBUG TemplateModel:83 - 2016-05-05 18:24:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 18:24:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 18:24:38 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-05 18:24:40 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 18:24:40 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 18:24:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:24:40 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 18:24:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:24:40 INFO ASLSession:352 - Logging the entrance -2016-05-05 18:24:40 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 18:24:40 DEBUG TemplateModel:83 - 2016-05-05 18:24:40, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 18:24:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 18:24:41 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 18:24:41 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 141 ms -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-05 18:24:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-05 18:24:41 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-05 18:24:41 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:24:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 18:24:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@57dbb243 -2016-05-05 18:24:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@86bb0b1 -2016-05-05 18:24:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@2e9d6095 -2016-05-05 18:24:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@3768a6a -2016-05-05 18:24:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 97 ms -2016-05-05 18:24:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-05 18:24:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-05 18:24:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 18:24:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-05 18:24:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-05 18:24:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:24:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:24:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-05 18:24:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-05 18:24:41 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-05 18:24:41 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 18:24:41 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-05 18:24:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 18:24:42 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 18:24:42 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 18:24:42 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 18:24:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:24:42 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 18:24:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 18:24:42 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-05 18:24:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:24:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:24:42 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-05 18:24:42 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-05 18:24:42 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-05 18:24:42 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-05 18:24:42 DEBUG JCRRepository:271 - Initialize repository -2016-05-05 18:24:42 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-05 18:24:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-05 18:24:42 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:24:42 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-05 18:24:42 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 81 ms -2016-05-05 18:24:42 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-05 18:24:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:24:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:24:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:24:42 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-05 18:24:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:24:42 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-05 18:24:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 18:24:42 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-05 18:24:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 18:24:43 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 18:24:43 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-05 18:24:43 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 18:24:43 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 18:24:43 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:24:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:24:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:24:43 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 18:24:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-05 18:24:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:24:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:24:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:24:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:24:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:24:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:24:43 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:24:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-05 18:24:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:24:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:24:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:24:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:24:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:24:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:24:43 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:24:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-05 18:24:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:24:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:24:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:24:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:24:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:24:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:24:43 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:24:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-05 18:24:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:24:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:24:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 18:24:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 18:24:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:24:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:24:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:24:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:24:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:24:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:24:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:24:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:24:44 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-05 18:24:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:24:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:24:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:24:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:24:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:24:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:24:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:24:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:24:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:24:44 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-05 18:24:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:24:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:24:44 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:24:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:24:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:24:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:24:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:24:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:24:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:24:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:24:44 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 18:24:44 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:24:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:24:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 18:24:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:24:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:24:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 18:24:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:24:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 18:24:44 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 18:24:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-05 18:24:44 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 18:24:44 INFO ISClientConnector:82 - found only one RR, take it -2016-05-05 18:24:44 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-05 18:24:44 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 18:24:44 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 18:24:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:24:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 18:24:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-05 18:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:24:44 INFO WorkspaceExplorerServiceImpl:178 - end time - 335 msc 0 sec -2016-05-05 18:24:44 INFO WorkspaceExplorerServiceImpl:178 - end time - 197 msc 0 sec -2016-05-05 18:24:44 INFO WorkspaceExplorerServiceImpl:178 - end time - 454 msc 0 sec -2016-05-05 18:25:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:25:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:26:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:26:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 18:27:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 18:28:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:28:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:29:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 18:29:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 18:30:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:30:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:31:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:31:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:31:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:31:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:32:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:32:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 18:33:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 18:33:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 18:34:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:34:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:35:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:35:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:36:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:36:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:37:37 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-05 18:37:37 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-05 18:37:37 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-05 18:37:37 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 18:37:37 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 18:37:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:37:37 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 18:37:37 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6db8b71b -2016-05-05 18:37:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:37:37 INFO ASLSession:352 - Logging the entrance -2016-05-05 18:37:37 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 18:37:37 DEBUG TemplateModel:83 - 2016-05-05 18:37:37, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 18:37:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 18:37:37 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-05 18:37:39 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 18:37:39 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 18:37:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 18:37:39 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 18:37:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:37:39 INFO ASLSession:352 - Logging the entrance -2016-05-05 18:37:39 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 18:37:39 DEBUG TemplateModel:83 - 2016-05-05 18:37:39, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 18:37:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 18:37:39 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 18:37:39 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 110 ms -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-05 18:37:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-05 18:37:40 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-05 18:37:40 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:37:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 18:37:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@4cbaaa25 -2016-05-05 18:37:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@79399d0d -2016-05-05 18:37:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@756b56cf -2016-05-05 18:37:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2e4931f4 -2016-05-05 18:37:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 108 ms -2016-05-05 18:37:40 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-05 18:37:40 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-05 18:37:40 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 18:37:40 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-05 18:37:40 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-05 18:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:37:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:37:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-05 18:37:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-05 18:37:40 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-05 18:37:40 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 18:37:40 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-05 18:37:40 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 18:37:40 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 18:37:40 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 18:37:40 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 18:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:37:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:37:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 18:37:40 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-05 18:37:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:37:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:37:40 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-05 18:37:40 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-05 18:37:40 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-05 18:37:40 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-05 18:37:40 DEBUG JCRRepository:271 - Initialize repository -2016-05-05 18:37:40 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-05 18:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-05 18:37:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:37:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-05 18:37:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 73 ms -2016-05-05 18:37:40 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-05 18:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:37:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:37:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:37:40 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-05 18:37:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:37:40 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-05 18:37:41 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 18:37:41 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 18:37:41 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-05 18:37:41 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 18:37:41 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 18:37:41 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-05 18:37:41 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-05 18:37:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:37:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:37:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:37:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:37:41 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 18:37:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-05 18:37:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:37:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:37:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:37:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:37:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:37:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:37:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:37:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:37:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:37:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-05 18:37:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:37:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:37:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:37:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:37:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:37:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:37:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:37:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:37:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:37:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-05 18:37:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:37:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:37:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 18:37:42 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-05 18:37:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:37:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:37:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:37:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:37:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:37:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:37:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:37:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-05 18:37:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:37:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:37:42 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 18:37:42 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 18:37:42 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 18:37:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 18:37:42 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 18:37:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 18:37:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:37:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:37:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:37:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:37:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:37:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:37:42 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-05 18:37:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:37:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:37:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 18:37:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 18:37:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 18:37:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:37:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:37:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:37:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:37:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:37:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:37:42 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-05 18:37:42 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-05 18:37:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:37:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:37:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-05 18:37:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 18:37:42 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:37:42 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 18:37:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:37:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:37:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:37:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:37:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:37:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:37:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:37:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:37:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:37:42 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-05 18:37:42 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-05 18:37:42 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:37:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-05 18:37:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:37:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:37:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 18:37:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:37:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-05 18:37:43 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 18:37:43 INFO ISClientConnector:82 - found only one RR, take it -2016-05-05 18:37:43 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-05 18:37:43 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-05 18:37:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-05 18:37:43 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 18:37:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-05 18:37:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:37:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 18:37:43 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 18:37:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-05 18:37:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-05 18:37:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-05 18:37:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-05 18:37:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 18:37:43 INFO WorkspaceExplorerServiceImpl:178 - end time - 363 msc 0 sec -2016-05-05 18:37:43 INFO WorkspaceExplorerServiceImpl:178 - end time - 180 msc 0 sec -2016-05-05 18:37:43 INFO WorkspaceExplorerServiceImpl:178 - end time - 400 msc 0 sec -2016-05-05 18:38:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:38:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 18:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 18:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 18:38:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:38:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:38:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:38:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:38:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:38:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:38:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:38:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:38:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:38:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:38:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:38:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:38:52 INFO JCRServlets:267 - Servlet getItemById dc768934-81af-40a8-9f1d-62eb88b570ef -2016-05-05 18:38:52 INFO JCRServlets:267 - Servlet getItemById dc768934-81af-40a8-9f1d-62eb88b570ef -2016-05-05 18:38:52 INFO JCRServlets:697 - Calling Servlet get Parents By Id dc768934-81af-40a8-9f1d-62eb88b570ef by giancarlo.panichi -2016-05-05 18:38:52 INFO JCRServlets:142 - Calling servlet getChildrenById dc768934-81af-40a8-9f1d-62eb88b570ef by giancarlo.panichi -2016-05-05 18:38:52 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:38:52 INFO WorkspaceExplorerServiceImpl:178 - end time - 72 msc 0 sec -2016-05-05 18:38:52 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=dc768934-81af-40a8-9f1d-62eb88b570ef, name=BIOCLIMATE_HCAF_ID_0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 18:38:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:38:52 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 18:38:52 INFO WorkspaceExplorerServiceImpl:431 - reached parent limit f7245109-f1c3-4c5a-828d-3381919a5f5a, break -2016-05-05 18:39:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:39:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:39:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:39:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 18:39:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-05 18:39:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-05 18:39:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:04 INFO JCRServlets:267 - Servlet getItemById 11a03c4e-7215-4369-aa55-34c4340fc04b -2016-05-05 18:39:04 INFO JCRServlets:267 - Servlet getItemById 11a03c4e-7215-4369-aa55-34c4340fc04b -2016-05-05 18:39:04 INFO JCRServlets:697 - Calling Servlet get Parents By Id 11a03c4e-7215-4369-aa55-34c4340fc04b by giancarlo.panichi -2016-05-05 18:39:04 INFO JCRServlets:142 - Calling servlet getChildrenById 11a03c4e-7215-4369-aa55-34c4340fc04b by giancarlo.panichi -2016-05-05 18:39:04 INFO WorkspaceExplorerServiceImpl:178 - end time - 64 msc 0 sec -2016-05-05 18:39:04 INFO JCRServlets:267 - Servlet getItemById dc768934-81af-40a8-9f1d-62eb88b570ef -2016-05-05 18:39:04 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=11a03c4e-7215-4369-aa55-34c4340fc04b, name=Input Data Sets, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 18:39:04 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:39:04 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=dc768934-81af-40a8-9f1d-62eb88b570ef, name=BIOCLIMATE_HCAF_ID_0b06a4b0-90f5-4fe1-95be-aa432fddb7ce, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 18:39:04 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:39:04 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 18:39:04 INFO WorkspaceExplorerServiceImpl:431 - reached parent limit f7245109-f1c3-4c5a-828d-3381919a5f5a, break -2016-05-05 18:39:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:39:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:39:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:39:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:39:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:39:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:39:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:08 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:39:08 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:39:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:39:08 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 18:39:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:39:08 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 18:39:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:39:08 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 18:39:08 DEBUG WorkspaceExplorerServiceImpl:416 - item and parent limit are identical element, returning -2016-05-05 18:39:08 INFO WorkspaceExplorerServiceImpl:178 - end time - 152 msc 0 sec -2016-05-05 18:39:51 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-05 18:39:51 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-05 18:39:51 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-05 18:39:51 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 18:39:51 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 18:39:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:39:51 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 18:39:51 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@735c4b10 -2016-05-05 18:39:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:39:51 INFO ASLSession:352 - Logging the entrance -2016-05-05 18:39:51 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 18:39:51 DEBUG TemplateModel:83 - 2016-05-05 18:39:51, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 18:39:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 18:39:51 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-05 18:39:52 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 18:39:52 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 18:39:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 18:39:52 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 18:39:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:39:52 INFO ASLSession:352 - Logging the entrance -2016-05-05 18:39:52 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 18:39:52 DEBUG TemplateModel:83 - 2016-05-05 18:39:52, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 18:39:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 18:39:53 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 18:39:53 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 123 ms -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-05 18:39:53 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-05 18:39:53 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-05 18:39:53 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:39:53 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 18:39:53 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7499e550 -2016-05-05 18:39:53 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3fb3d313 -2016-05-05 18:39:53 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4119977d -2016-05-05 18:39:53 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@6202e38 -2016-05-05 18:39:53 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 139 ms -2016-05-05 18:39:53 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-05 18:39:53 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-05 18:39:53 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 18:39:53 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-05 18:39:53 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-05 18:39:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:39:53 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:39:53 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-05 18:39:53 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-05 18:39:53 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-05 18:39:53 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 18:39:53 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-05 18:39:53 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 18:39:53 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 18:39:53 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 18:39:53 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 18:39:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:39:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:39:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 18:39:53 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-05 18:39:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:54 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-05 18:39:54 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-05 18:39:54 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-05 18:39:54 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-05 18:39:54 DEBUG JCRRepository:271 - Initialize repository -2016-05-05 18:39:54 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-05 18:39:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-05 18:39:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:39:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-05 18:39:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 154 ms -2016-05-05 18:39:54 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-05 18:39:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:39:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:54 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-05 18:39:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:54 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-05 18:39:54 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 18:39:54 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 18:39:54 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-05 18:39:54 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 18:39:54 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 18:39:54 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-05 18:39:54 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-05 18:39:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:39:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:39:54 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 18:39:54 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-05 18:39:54 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 18:39:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-05 18:39:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:39:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:39:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:55 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:39:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-05 18:39:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:39:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:39:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:55 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:39:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-05 18:39:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:39:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:39:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:55 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:39:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-05 18:39:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:39:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:39:56 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 18:39:56 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 18:39:56 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 18:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:39:56 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 18:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:39:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:56 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-05 18:39:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:39:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:39:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 18:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:39:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:56 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-05 18:39:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:39:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:39:56 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-05 18:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:39:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:39:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:39:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:39:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:39:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:39:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:39:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:39:56 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:39:56 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-05 18:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-05 18:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:39:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:39:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:39:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 18:39:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:39:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 23 ms -2016-05-05 18:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-05 18:39:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:39:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 18:39:57 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 18:39:57 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-05 18:39:57 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 18:39:57 INFO ISClientConnector:82 - found only one RR, take it -2016-05-05 18:39:57 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-05 18:39:57 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-05 18:39:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-05 18:39:57 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 18:39:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-05 18:39:57 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 18:39:57 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 18:39:57 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-05 18:39:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-05 18:39:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-05 18:39:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-05 18:39:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:39:57 INFO WorkspaceExplorerServiceImpl:178 - end time - 317 msc 0 sec -2016-05-05 18:39:57 INFO WorkspaceExplorerServiceImpl:178 - end time - 211 msc 0 sec -2016-05-05 18:39:57 INFO WorkspaceExplorerServiceImpl:178 - end time - 356 msc 0 sec -2016-05-05 18:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:40:46 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 18:41:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:41:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:42:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 18:43:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 18:43:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 18:44:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:44:26 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 18:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:46:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:46:16 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 18:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:47:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:48:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 18:48:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 18:49:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:49:01 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 18:49:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:49:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:50:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:50:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:51:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:51:46 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 18:52:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:52:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 18:52:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 18:52:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:52:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:52:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:52:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:52:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:52:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:52:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:52:16 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 18:52:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:52:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:52:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:52:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:52:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:52:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:52:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:52:16 INFO JCRServlets:267 - Servlet getItemById 85b62f64-c4c5-4e24-abe4-7f04eeeabf3c -2016-05-05 18:52:16 INFO JCRServlets:267 - Servlet getItemById 85b62f64-c4c5-4e24-abe4-7f04eeeabf3c -2016-05-05 18:52:16 INFO JCRServlets:142 - Calling servlet getChildrenById 85b62f64-c4c5-4e24-abe4-7f04eeeabf3c by giancarlo.panichi -2016-05-05 18:52:16 INFO JCRServlets:697 - Calling Servlet get Parents By Id 85b62f64-c4c5-4e24-abe4-7f04eeeabf3c by giancarlo.panichi -2016-05-05 18:52:16 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:52:16 INFO WorkspaceExplorerServiceImpl:178 - end time - 107 msc 0 sec -2016-05-05 18:52:16 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=85b62f64-c4c5-4e24-abe4-7f04eeeabf3c, name=DBSCAN_ID_2f102ace-6fec-447f-a2ba-47c46d30d0a3, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 18:52:16 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:52:16 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 18:52:16 INFO WorkspaceExplorerServiceImpl:431 - reached parent limit f7245109-f1c3-4c5a-828d-3381919a5f5a, break -2016-05-05 18:52:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:52:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:52:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 18:52:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 18:52:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 18:52:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 18:52:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:52:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:52:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:52:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:52:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:52:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:52:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 18:52:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 18:52:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 18:52:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 18:52:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 18:52:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 18:52:18 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:52:18 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 18:52:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 18:52:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 18:52:18 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 18:52:18 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 18:52:18 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 18:52:18 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-05 18:52:18 DEBUG WorkspaceExplorerServiceImpl:416 - item and parent limit are identical element, returning -2016-05-05 18:52:18 INFO WorkspaceExplorerServiceImpl:178 - end time - 170 msc 0 sec -2016-05-05 18:52:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:52:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 18:53:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 18:53:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 19:22:04 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-05 19:22:04 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-05 19:22:04 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-05 19:22:04 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 19:22:04 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 19:22:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 19:22:04 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 19:22:04 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@55c20da -2016-05-05 19:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 19:22:04 INFO ASLSession:352 - Logging the entrance -2016-05-05 19:22:04 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 19:22:04 DEBUG TemplateModel:83 - 2016-05-05 19:22:04, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 19:22:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 19:22:04 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-05 19:22:06 INFO SessionUtil:49 - no user found in session, use test user -2016-05-05 19:22:06 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-05 19:22:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-05 19:22:06 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-05 19:22:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 19:22:06 INFO ASLSession:352 - Logging the entrance -2016-05-05 19:22:06 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-05 19:22:06 DEBUG TemplateModel:83 - 2016-05-05 19:22:06, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-05 19:22:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 19:22:06 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 19:22:06 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 111 ms -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-05 19:22:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-05 19:22:06 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-05 19:22:06 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 19:22:06 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-05 19:22:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2cfeed4f -2016-05-05 19:22:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3c862c54 -2016-05-05 19:22:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@3be6a8b8 -2016-05-05 19:22:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@700c0742 -2016-05-05 19:22:06 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 124 ms -2016-05-05 19:22:06 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-05 19:22:07 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 19:22:07 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 19:22:07 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 19:22:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 19:22:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-05 19:22:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-05 19:22:07 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-05 19:22:07 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-05 19:22:07 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-05 19:22:07 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-05 19:22:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 19:22:07 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-05 19:22:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 19:22:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-05 19:22:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 19:22:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-05 19:22:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-05-05 19:22:07 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-05 19:22:07 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 19:22:07 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-05 19:22:07 INFO StatWPSClientSession:84 - CONNECT -2016-05-05 19:22:07 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-05 19:22:07 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-05 19:22:07 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-05 19:22:07 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-05 19:22:07 DEBUG JCRRepository:271 - Initialize repository -2016-05-05 19:22:07 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-05 19:22:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-05 19:22:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 19:22:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-05 19:22:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 47 ms -2016-05-05 19:22:07 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-05 19:22:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-05 19:22:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 19:22:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 19:22:07 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-05 19:22:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 19:22:07 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-05 19:22:07 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 19:22:07 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 19:22:07 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-05 19:22:07 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-05 19:22:07 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-05 19:22:07 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-05 19:22:07 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-05 19:22:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 19:22:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 19:22:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 19:22:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 19:22:07 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-05 19:22:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-05 19:22:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 19:22:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 19:22:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 19:22:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 19:22:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 19:22:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 19:22:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 19:22:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 19:22:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 19:22:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-05 19:22:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 19:22:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 19:22:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 19:22:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 19:22:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 19:22:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 19:22:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 19:22:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 19:22:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 19:22:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-05 19:22:08 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-05 19:22:08 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-05 19:22:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 19:22:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 19:22:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 19:22:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 19:22:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 19:22:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 19:22:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 19:22:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 19:22:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-05 19:22:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-05 19:22:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 19:22:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 19:22:08 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-05 19:22:08 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-05 19:22:08 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-05 19:22:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 19:22:08 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-05 19:22:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 19:22:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 19:22:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 19:22:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 19:22:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 19:22:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 19:22:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 19:22:08 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-05 19:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 19:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 19:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-05 19:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 19:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 19:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 19:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 19:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 19:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 19:22:09 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-05 19:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 19:22:09 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-05 19:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 19:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 19:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-05 19:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-05 19:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-05 19:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-05 19:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-05 19:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-05 19:22:09 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 19:22:09 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-05 19:22:09 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 19:22:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 19:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-05 19:22:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 32 ms -2016-05-05 19:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 19:22:09 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 19:22:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-05 19:22:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-05 19:22:09 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-05 19:22:09 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-05 19:22:09 INFO ISClientConnector:82 - found only one RR, take it -2016-05-05 19:22:09 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-05 19:22:09 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 19:22:09 DEBUG StorageClient:517 - set scope: /gcube -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 19:22:09 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-05 19:22:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-05 19:22:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-05 19:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-05 19:22:09 INFO WorkspaceExplorerServiceImpl:178 - end time - 337 msc 0 sec -2016-05-05 19:22:09 INFO WorkspaceExplorerServiceImpl:178 - end time - 274 msc 0 sec -2016-05-05 19:22:09 INFO WorkspaceExplorerServiceImpl:178 - end time - 206 msc 0 sec -2016-05-05 19:22:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 19:22:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 19:23:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 19:23:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-05 19:24:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-05 19:24:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-05 19:25:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-05 19:25:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:14:29 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-06 11:14:29 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-06 11:14:29 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-06 11:14:29 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 11:14:29 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:14:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:14:29 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 11:14:29 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@18ce7e09 -2016-05-06 11:14:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:14:29 INFO ASLSession:352 - Logging the entrance -2016-05-06 11:14:29 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 11:14:29 DEBUG TemplateModel:83 - 2016-05-06 11:14:29, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 11:14:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:14:29 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-06 11:14:35 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 11:14:35 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:14:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:14:35 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 11:14:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:14:35 INFO ASLSession:352 - Logging the entrance -2016-05-06 11:14:35 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 11:14:35 DEBUG TemplateModel:83 - 2016-05-06 11:14:35, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 11:14:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:14:35 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 11:14:35 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 226 ms -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-06 11:14:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-06 11:14:36 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-06 11:14:36 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:14:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 11:14:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@4e8324fb -2016-05-06 11:14:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@5134928b -2016-05-06 11:14:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@90d2e23 -2016-05-06 11:14:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2bd25a4f -2016-05-06 11:14:36 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 254 ms -2016-05-06 11:14:37 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-06 11:14:37 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-06 11:14:37 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:14:37 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-06 11:14:37 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-06 11:14:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:14:37 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:14:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-06 11:14:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 21 ms -2016-05-06 11:14:37 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-06 11:14:37 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:14:37 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-06 11:14:37 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:14:37 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 11:14:37 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 11:14:37 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 11:14:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:14:37 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:14:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:14:37 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-06 11:14:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:14:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:14:39 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-06 11:14:39 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-06 11:14:39 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-06 11:14:39 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-06 11:14:39 DEBUG JCRRepository:271 - Initialize repository -2016-05-06 11:14:39 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-06 11:14:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 37 -2016-05-06 11:14:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:14:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-06 11:14:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 25 ms -2016-05-06 11:14:40 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:14:40 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-06 11:14:40 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-06 11:14:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:14:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:14:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:14:40 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-06 11:14:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:14:40 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-06 11:14:40 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 11:14:41 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 11:14:41 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-06 11:14:41 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 11:14:41 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 11:14:41 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:14:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:14:41 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-06 11:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:14:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:14:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:14:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:14:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:14:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:14:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-06 11:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:14:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:14:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:14:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:14:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:14:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:14:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-06 11:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:14:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:14:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:14:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:14:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:14:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:14:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-06 11:14:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:14:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:14:42 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 11:14:42 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 11:14:42 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 11:14:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:14:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:14:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:14:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:14:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:14:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:14:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:14:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:14:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:14:42 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-06 11:14:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:14:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:14:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:14:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:14:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:14:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:14:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:14:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:14:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:14:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:14:43 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-06 11:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:14:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:14:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:14:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:14:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:14:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:14:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:14:43 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-06 11:14:43 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 11:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:14:43 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 11:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:14:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:14:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:14:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 29 ms -2016-05-06 11:14:43 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 11:14:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:14:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 11:14:43 INFO WorkspaceExplorerServiceImpl:178 - end time - 127 msc 0 sec -2016-05-06 11:14:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 34 ms -2016-05-06 11:14:43 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 11:14:43 INFO ISClientConnector:82 - found only one RR, take it -2016-05-06 11:14:43 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-06 11:14:43 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 11:14:43 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 11:14:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:14:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:14:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 42 ms -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:14:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:14:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:14:43 INFO WorkspaceExplorerServiceImpl:178 - end time - 466 msc 0 sec -2016-05-06 11:14:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-06 11:14:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:14:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 11:14:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 20 ms -2016-05-06 11:14:43 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 11:14:43 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-06 11:14:43 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-06 11:14:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:14:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:14:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-06 11:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:14:43 INFO WorkspaceExplorerServiceImpl:178 - end time - 513 msc 0 sec -2016-05-06 11:15:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:15:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:16:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:16:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:17:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:17:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:18:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:18:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:19:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:19:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:19:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:19:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:20:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:20:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:21:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:21:18 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:21:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:21:18 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-06 11:21:18 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:21:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:21:19 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-06 11:21:19 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-06 11:21:19 DEBUG SClient4WPS:303 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-06 11:21:19 DEBUG SClient4WPS:303 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-06 11:21:19 DEBUG SClient4WPS:303 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-06 11:21:19 DEBUG SClient4WPS:303 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-06 11:21:19 DEBUG SClient4WPS:303 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-06 11:21:19 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-06 11:21:19 DEBUG SClient4WPS:310 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-06 11:21:19 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-06 11:21:19 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:21:19 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-06 11:21:19 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 11:21:19 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 11:21:19 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 11:21:19 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 11:21:19 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-06 11:21:19 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-06 11:21:19 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:19 DEBUG SClient4WPS:652 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 11:21:19 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-06 11:21:19 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:21:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:21:19 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 11:21:19 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 11:21:19 DEBUG WPS2SM:111 - Machter find: true -2016-05-06 11:21:19 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-06 11:21:19 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-06 11:21:19 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-06 11:21:19 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-06 11:21:19 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-06 11:21:19 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-06 11:21:19 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-06 11:21:19 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-06 11:21:19 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:19 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-06 11:21:19 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-06 11:21:19 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:21:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:21:19 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-06 11:21:19 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-06 11:21:19 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-06 11:21:19 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:19 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-06 11:21:19 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-06 11:21:19 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:21:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:21:19 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-06 11:21:19 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-06 11:21:19 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-06 11:21:19 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:19 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-06 11:21:19 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-06 11:21:19 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:21:19 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:21:19 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 11:21:19 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-06 11:21:19 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-06 11:21:19 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:19 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 11:21:19 DEBUG SClient4WPS:656 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:21:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:21:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-06 11:21:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:21:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-06 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:21:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:21:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:21:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:21:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:21:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:21:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-06 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-06 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-06 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-06 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-06 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:21:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-06 11:21:20 INFO WorkspaceExplorerServiceImpl:138 - end time - 260 msc 0 sec -2016-05-06 11:21:20 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-06 11:21:27 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:21:27 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:21:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:21:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:21:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:21:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:27 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:21:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:21:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:21:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:21:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:21:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:21:27 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:21:27 DEBUG ServiceEngine:306 - get() - start -2016-05-06 11:21:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:21:27 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:21:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:21:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:21:27 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:21:27 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-06 11:21:27 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-06 11:21:27 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:21:27 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:21:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:21:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:21:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:21:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:21:27 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 11:21:27 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:21:27 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 11:21:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:21:27 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:21:27 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:21:27 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:21:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:21:27 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:21:27 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:21:27 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:21:27 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:21:27 INFO WorkspaceExplorerServiceImpl:178 - end time - 74 msc 0 sec -2016-05-06 11:21:27 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:21:27 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:27 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:21:27 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 11:21:27 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:27 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:28 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:21:28 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:21:28 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:21:28 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1944589}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:323291}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1434450, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2233997, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:28 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:21:28 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:28 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:28 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:28 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2198921}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1126217, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:28 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1612832}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1426971, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 11:21:28 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1944590}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1944590}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG command:56 - Command execution completed -2016-05-06 11:21:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1944590}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG command:56 - Command execution completed -2016-05-06 11:21:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1944590}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG command:56 - Command execution completed -2016-05-06 11:21:28 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:21:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1944590}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG command:56 - Command execution completed -2016-05-06 11:21:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1944590}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 DEBUG command:56 - Command execution completed -2016-05-06 11:21:28 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1944590}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:28 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 11:21:28 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 11:21:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:21:28 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:21:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:21:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:28 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 11:21:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:21:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:21:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:21:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:28 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 11:21:28 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 11:21:29 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-06 11:21:29 DEBUG query:56 - Query completed -2016-05-06 11:21:29 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-06 11:21:29 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2198921} -2016-05-06 11:21:29 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:323291} -2016-05-06 11:21:29 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1944590}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:21:29 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1612832} -2016-05-06 11:21:29 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1944590} -2016-05-06 11:21:29 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1944589} -2016-05-06 11:21:29 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:21:29 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:21:29 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:21:29 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-06 11:21:29 DEBUG ServiceEngine:306 - get() - start -2016-05-06 11:21:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:21:29 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:21:29 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-06 11:21:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 11:21:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:21:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:21:29 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 11:21:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:21:29 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-06 11:21:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:21:29 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:21:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:21:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:21:29 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:21:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:21:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:21:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:21:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:21:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:21:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:21:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:21:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:21:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:29 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:21:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:21:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:29 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 11:21:29 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 11:21:29 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1944591}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1678052, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:21:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:29 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2198923}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=974623, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:29 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-06 11:21:29 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-06 11:21:29 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1612833}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1380630, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 11:21:29 INFO WorkspaceExplorerServiceImpl:178 - end time - 48 msc 0 sec -2016-05-06 11:21:29 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1944592}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1944592}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG command:56 - Command execution completed -2016-05-06 11:21:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1944592}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG command:56 - Command execution completed -2016-05-06 11:21:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1944592}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG command:56 - Command execution completed -2016-05-06 11:21:29 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:21:29 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-06 11:21:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1944592}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG command:56 - Command execution completed -2016-05-06 11:21:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1944592}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG command:56 - Command execution completed -2016-05-06 11:21:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1944592}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:21:29 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:21:29 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:21:29 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 11:21:29 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:323292}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:21:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2022793, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 11:21:30 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 11:21:30 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 11:21:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:21:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:21:30 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 11:21:30 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 11:21:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:21:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:21:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:21:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:21:30 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:21:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:21:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:21:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:30 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 11:21:30 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 11:21:30 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 11:21:30 INFO WorkspaceExplorerServiceImpl:491 - returning size: 849 -2016-05-06 11:21:30 DEBUG query:56 - Query completed -2016-05-06 11:21:30 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-06 11:21:30 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2198923} -2016-05-06 11:21:30 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:323292} -2016-05-06 11:21:30 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1612833} -2016-05-06 11:21:30 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1944592}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:21:30 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1944592} -2016-05-06 11:21:30 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1944591} -2016-05-06 11:21:30 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:21:30 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-06 11:21:30 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-06 11:21:30 INFO WorkspaceExplorerServiceImpl:491 - returning size: 849 -2016-05-06 11:21:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:21:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:21:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:21:31 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-06 11:21:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:31 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 11:21:31 DEBUG ServiceEngine:193 - get() - start -2016-05-06 11:21:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:21:31 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:21:31 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-06 11:21:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-06 11:21:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:21:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:21:31 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-06 11:21:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:21:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:21:31 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:21:31 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 11:21:31 DEBUG Operation:173 - get(String) - start -2016-05-06 11:21:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:21:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:21:31 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:21:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:21:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:21:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:21:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:323294}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1331529, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:21:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2198924}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=883902, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1944595}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1487568, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1612834}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1216802, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1944596}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 11:21:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 11:21:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 11:21:31 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG query:56 - Query completed -2016-05-06 11:21:31 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-06 11:21:31 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 11:21:31 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-06 11:21:31 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG update:56 - Update completed -2016-05-06 11:21:31 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1944596}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG query:56 - Query completed -2016-05-06 11:21:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:21:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:21:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:21:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:21:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:21:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:21:31 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 11:21:31 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-06 11:21:31 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-06 11:21:31 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-06 11:21:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:21:31 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:21:31 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-06 11:21:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-06 11:21:31 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-06 11:21:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:21:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-06 11:21:31 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-06 11:21:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:21:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:21:31 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:21:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:21:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:21:31 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:21:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:21:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:21:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:21:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:323295}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1225594, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:21:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2198925}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1944597}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=931636, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1391755, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1612835}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1266418, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-06 11:21:31 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1944598}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1944598}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1944598}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1944598}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 11:21:31 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 11:21:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1944598}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1944598}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG command:56 - Command execution completed -2016-05-06 11:21:31 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 11:21:31 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1944598}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG query:56 - Query completed -2016-05-06 11:21:31 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-06 11:21:31 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2198925} -2016-05-06 11:21:31 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:323295} -2016-05-06 11:21:31 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1612835} -2016-05-06 11:21:31 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1944598}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:21:31 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1944598} -2016-05-06 11:21:31 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1944597} -2016-05-06 11:21:31 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:21:31 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 11:21:31 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-06 11:21:31 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-06 11:21:31 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-06 11:21:31 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-06 11:21:31 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-06 11:21:31 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-06 11:21:31 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:21:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:21:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:21:32 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2198924} -2016-05-06 11:21:32 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1612834} -2016-05-06 11:21:32 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1944596}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:21:32 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1944596} -2016-05-06 11:21:32 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:323294} -2016-05-06 11:21:32 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1944595} -2016-05-06 11:21:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:21:46 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:21:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:21:46 DEBUG DataMinerManagerServiceImpl:134 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-06 11:21:46 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-06 11:21:46 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 11:21:46 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 11:21:46 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 11:21:46 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 11:21:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-06 11:21:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-06 11:21:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:46 DEBUG SClient4WPS:683 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 11:21:46 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-06 11:21:46 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:21:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:21:46 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 11:21:46 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 11:21:46 DEBUG WPS2SM:111 - Machter find: true -2016-05-06 11:21:46 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-06 11:21:46 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-06 11:21:46 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-06 11:21:46 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-06 11:21:46 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-06 11:21:46 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-06 11:21:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-06 11:21:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-06 11:21:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:46 DEBUG SClient4WPS:683 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-06 11:21:46 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-06 11:21:46 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:21:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:21:46 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-06 11:21:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-06 11:21:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-06 11:21:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:46 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-06 11:21:46 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-06 11:21:46 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:21:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:21:46 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-06 11:21:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-06 11:21:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-06 11:21:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:46 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-06 11:21:46 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-06 11:21:46 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:21:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:21:46 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 11:21:46 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-06 11:21:46 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-06 11:21:46 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:21:46 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 11:21:46 DEBUG SClient4WPS:691 - UserInputs[key=OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0] -2016-05-06 11:21:46 DEBUG SClient4WPS:691 - UserInputs[key=FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean] -2016-05-06 11:21:46 DEBUG SClient4WPS:691 - UserInputs[key=OccurrencePointsClusterLabel, value=Test] -2016-05-06 11:21:46 DEBUG SClient4WPS:691 - UserInputs[key=epsilon, value=10] -2016-05-06 11:21:46 DEBUG SClient4WPS:691 - UserInputs[key=min_points, value=1] -2016-05-06 11:21:46 DEBUG SClient4WPS:744 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-06 11:21:46 DEBUG SClient4WPS:727 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-06 11:21:46 DEBUG SClient4WPS:727 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-05-06 11:21:46 DEBUG SClient4WPS:727 - Configuring Literal: epsilon to: 10 -2016-05-06 11:21:46 DEBUG SClient4WPS:727 - Configuring Literal: min_points to: 1 -2016-05-06 11:21:46 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:21:46 DEBUG SClient4WPS:388 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-06 11:21:46 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-06 11:21:46 DEBUG SClient4WPS:415 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b548e220-6a15-4914-8e7b-a7861fc280e1 -2016-05-06 11:21:46 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:21:46 DEBUG SClient4WPS:787 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b548e220-6a15-4914-8e7b-a7861fc280e1 -2016-05-06 11:21:46 DEBUG SClient4WPS:697 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b548e220-6a15-4914-8e7b-a7861fc280e1 -2016-05-06 11:21:46 DEBUG SClient4WPS:708 - ComputationId: ComputationId [id=b548e220-6a15-4914-8e7b-a7861fc280e1, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b548e220-6a15-4914-8e7b-a7861fc280e1] -2016-05-06 11:21:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:21:49 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:21:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:21:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:21:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:21:57 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=b548e220-6a15-4914-8e7b-a7861fc280e1, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b548e220-6a15-4914-8e7b-a7861fc280e1] -2016-05-06 11:21:57 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 11:21:57 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 11:21:57 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b548e220-6a15-4914-8e7b-a7861fc280e1 -2016-05-06 11:21:57 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:21:57 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:21:57 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:21:57 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/ZHQyTWx4bTRYaGR1OUtmNGlWNFVMS0owRTB4aGc4aENHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-06 11:21:57 DEBUG SClient4WPS:875 - WPS SUCCESS -2016-05-06 11:21:57 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-06 11:21:57 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=b548e220-6a15-4914-8e7b-a7861fc280e1, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b548e220-6a15-4914-8e7b-a7861fc280e1] -2016-05-06 11:21:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:21:57 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:21:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:21:57 DEBUG SClient4WPS:436 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b548e220-6a15-4914-8e7b-a7861fc280e1 -2016-05-06 11:21:57 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b548e220-6a15-4914-8e7b-a7861fc280e1 -2016-05-06 11:21:57 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:21:57 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:21:57 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:21:57 DEBUG SClient4WPS:447 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/ZHQyTWx4bTRYaGR1OUtmNGlWNFVMS0owRTB4aGc4aENHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-06 11:21:57 DEBUG SClient4WPS:970 - Process Executed -2016-05-06 11:21:57 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 11:21:57 DEBUG SClient4WPS:574 - Node Name: #text -2016-05-06 11:21:57 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 11:21:57 DEBUG SClient4WPS:574 - Node Name: ogr:FeatureCollection -2016-05-06 11:21:57 DEBUG SClient4WPS:574 - Node Name: gml:featureMember -2016-05-06 11:21:57 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:21:57 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/ZHQyTWx4bTRYaGR1OUtmNGlWNFVMS0owRTB4aGc4aENHbWJQNStIS0N6Yz0 -2016-05-06 11:21:57 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-05-06 11:21:57 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-06 11:21:57 DEBUG SClient4WPS:516 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/ZHQyTWx4bTRYaGR1OUtmNGlWNFVMS0owRTB4aGc4aENHbWJQNStIS0N6Yz0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], mimeType=text/csv] -2016-05-06 11:21:57 DEBUG SClient4WPS:1018 - Adding OBJ:F0 -2016-05-06 11:21:57 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/ZHQyTWx4bTRYaGR1OUtmNGlWNFVMS0owRTB4aGc4aENHbWJQNStIS0N6Yz0, name=F0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=OBJECT] -2016-05-06 11:21:57 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/ZHQyTWx4bTRYaGR1OUtmNGlWNFVMS0owRTB4aGc4aENHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getDescription()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-06 11:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:22:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:22:12 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-06 11:22:12 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:22:12 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:22:13 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-06 11:22:13 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-06 11:22:13 DEBUG SClient4WPS:303 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-06 11:22:13 DEBUG SClient4WPS:303 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-06 11:22:13 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-06 11:22:13 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-06 11:22:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:22:13 DEBUG WPS2SM:325 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-06 11:22:13 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 11:22:13 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 11:22:13 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 11:22:13 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 11:22:13 DEBUG WPS2SM:235 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 11:22:13 DEBUG WPS2SM:236 - Machter find: true -2016-05-06 11:22:13 DEBUG WPS2SM:237 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-06 11:22:13 DEBUG WPS2SM:239 - Machter start: 31 -2016-05-06 11:22:13 DEBUG WPS2SM:241 - Machter end: 97 -2016-05-06 11:22:13 DEBUG WPS2SM:242 - Machter Group Count: 1 -2016-05-06 11:22:13 DEBUG WPS2SM:245 - Matcher separator: | -2016-05-06 11:22:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-06 11:22:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-06 11:22:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:22:13 DEBUG SClient4WPS:652 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 11:22:13 DEBUG WPS2SM:300 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-06 11:22:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:22:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:22:13 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 11:22:13 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 11:22:13 DEBUG WPS2SM:149 - Machter find: true -2016-05-06 11:22:13 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-06 11:22:13 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-06 11:22:13 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-06 11:22:13 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-06 11:22:13 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-06 11:22:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-06 11:22:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-06 11:22:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:22:13 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-06 11:22:13 DEBUG SClient4WPS:656 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:13 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:13 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-06 11:22:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-06 11:22:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:13 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:22:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-06 11:22:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-06 11:22:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-06 11:22:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-06 11:22:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:22:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-06 11:22:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:22:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-06 11:22:13 INFO WorkspaceExplorerServiceImpl:138 - end time - 221 msc 0 sec -2016-05-06 11:22:13 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-06 11:22:20 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:20 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:22:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:22:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:20 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:20 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:20 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:21 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:22:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:22:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:22:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:21 DEBUG ServiceEngine:306 - get() - start -2016-05-06 11:22:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:21 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:21 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-06 11:22:21 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-06 11:22:21 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:22:21 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:22:21 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 11:22:21 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:22:21 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 11:22:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:21 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:21 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:22:21 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:22:21 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:22:21 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:22:21 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:21 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:21 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:21 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:22:21 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:22:21 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:22:21 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:22:21 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:22:21 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:323393}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1248417, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:21 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:22:21 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:21 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:22:21 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1944731}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2757455, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:21 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:21 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2198998}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1056550, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:21 INFO WorkspaceExplorerServiceImpl:178 - end time - 64 msc 0 sec -2016-05-06 11:22:21 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:22:21 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 11:22:21 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1612907}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1017765, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-06 11:22:21 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1944733}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1944733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG command:56 - Command execution completed -2016-05-06 11:22:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1944733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG command:56 - Command execution completed -2016-05-06 11:22:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1944733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG command:56 - Command execution completed -2016-05-06 11:22:21 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:22:21 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1944733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG command:56 - Command execution completed -2016-05-06 11:22:21 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1944733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG command:56 - Command execution completed -2016-05-06 11:22:21 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1944733}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-06 11:22:22 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:22 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:22:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:22 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:22 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:22:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:22 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-06 11:22:22 DEBUG ServiceEngine:306 - get() - start -2016-05-06 11:22:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:22 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:22 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-06 11:22:22 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 11:22:22 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:22:22 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:22:22 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 11:22:22 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:22:22 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-06 11:22:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:22 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:22 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:22:22 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:22:22 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:22:22 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:22:22 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:22 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:22 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:22 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:22:22 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:22:22 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:22:22 DEBUG query:56 - Query completed -2016-05-06 11:22:22 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-06 11:22:22 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:323393} -2016-05-06 11:22:22 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1612907} -2016-05-06 11:22:22 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2198998} -2016-05-06 11:22:22 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1944733}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:22:22 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1944733} -2016-05-06 11:22:22 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1944731} -2016-05-06 11:22:22 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:22:22 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:22:22 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:22:22 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-06 11:22:22 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:323408}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1944751}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1120297, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1094926, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:22 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:22:22 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:22:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:22 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:22:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:22 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:22 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:22 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2199008}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1064479, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:22 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1612918}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1707556, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-06 11:22:22 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-06 11:22:22 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-06 11:22:22 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1944752}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1944752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG command:56 - Command execution completed -2016-05-06 11:22:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1944752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG command:56 - Command execution completed -2016-05-06 11:22:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1944752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG command:56 - Command execution completed -2016-05-06 11:22:22 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-06 11:22:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1944752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG command:56 - Command execution completed -2016-05-06 11:22:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1944752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 DEBUG command:56 - Command execution completed -2016-05-06 11:22:22 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1944752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:22 INFO WorkspaceExplorerServiceImpl:178 - end time - 57 msc 0 sec -2016-05-06 11:22:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:22 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:22:22 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:22:22 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:22:22 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 11:22:23 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-06 11:22:23 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-06 11:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:22:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:22:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:23 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-06 11:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:23 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-06 11:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:23 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-06 11:22:23 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-06 11:22:23 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-06 11:22:23 INFO WorkspaceExplorerServiceImpl:491 - returning size: 1951243 -2016-05-06 11:22:23 DEBUG query:56 - Query completed -2016-05-06 11:22:23 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-06 11:22:23 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2199008} -2016-05-06 11:22:23 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:323408} -2016-05-06 11:22:23 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1944752}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:22:23 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1944752} -2016-05-06 11:22:23 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1612918} -2016-05-06 11:22:23 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:22:23 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1944751} -2016-05-06 11:22:23 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-06 11:22:23 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-06 11:22:23 INFO WorkspaceExplorerServiceImpl:491 - returning size: 3902486 -2016-05-06 11:22:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:24 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:22:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:22:24 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-06 11:22:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-06 11:22:36 DEBUG ServiceEngine:193 - get() - start -2016-05-06 11:22:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:36 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:36 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-06 11:22:36 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-06 11:22:36 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:22:36 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:22:36 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-06 11:22:36 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:22:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:36 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:36 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-06 11:22:36 DEBUG Operation:173 - get(String) - start -2016-05-06 11:22:36 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:22:36 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:22:36 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:22:36 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:22:36 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:36 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:36 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:22:36 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:22:36 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1944760}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:323413}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1403803, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1513740, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:36 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:22:36 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:36 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:36 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2199013}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=980889, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1612921}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1072719, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1944761}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 11:22:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-06 11:22:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-06 11:22:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG query:56 - Query completed -2016-05-06 11:22:36 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-06 11:22:36 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 11:22:36 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-06 11:22:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG update:56 - Update completed -2016-05-06 11:22:36 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1944761}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG query:56 - Query completed -2016-05-06 11:22:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-06 11:22:36 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-06 11:22:36 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-06 11:22:36 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-06 11:22:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:36 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:36 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-06 11:22:36 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-06 11:22:36 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-06 11:22:36 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:22:36 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-06 11:22:36 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-06 11:22:36 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:22:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:36 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:36 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:22:36 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:22:36 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:22:36 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:22:36 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:36 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:36 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:22:36 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:22:36 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:323414}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1281768, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:36 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:22:36 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:36 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2199014}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1944762}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1074101, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1511278, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:36 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1612922}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1152888, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:22:36 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1944763}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1944763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1944763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1944763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-06 11:22:36 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-06 11:22:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1944763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1944763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG command:56 - Command execution completed -2016-05-06 11:22:36 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-06 11:22:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1944763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:36 DEBUG query:56 - Query completed -2016-05-06 11:22:36 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-06 11:22:36 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2199014} -2016-05-06 11:22:36 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1612922} -2016-05-06 11:22:36 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:323414} -2016-05-06 11:22:36 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1944763}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:22:36 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1944763} -2016-05-06 11:22:36 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:22:36 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1944762} -2016-05-06 11:22:36 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-06 11:22:36 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-06 11:22:36 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-06 11:22:36 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-06 11:22:36 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-06 11:22:36 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-06 11:22:36 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-06 11:22:36 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-06 11:22:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-06 11:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2199013} -2016-05-06 11:22:42 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1944761}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:323413} -2016-05-06 11:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1612921} -2016-05-06 11:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1944761} -2016-05-06 11:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1944760} -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-06 11:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:22:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:22:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-06 11:22:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-06 11:22:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-06 11:22:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-06 11:22:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:22:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-06 11:22:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:22:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-06 11:22:44 INFO WorkspaceExplorerServiceImpl:138 - end time - 189 msc 0 sec -2016-05-06 11:22:44 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-06 11:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:22:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:22:50 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:50 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:50 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:22:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:50 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:22:50 DEBUG ServiceEngine:306 - get() - start -2016-05-06 11:22:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:50 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:50 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-06 11:22:50 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-06 11:22:50 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:22:50 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:22:50 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 11:22:50 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:22:50 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 11:22:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:50 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:50 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:22:50 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:22:50 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:22:50 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:22:50 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:50 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:50 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:50 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:22:50 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:22:50 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:22:50 INFO connection:71 - Opened connection [connectionId{localValue:41, serverValue:323425}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 INFO connection:71 - Opened connection [connectionId{localValue:42, serverValue:1944776}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1251821, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:50 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:22:50 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:50 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1453466, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:50 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:50 INFO connection:71 - Opened connection [connectionId{localValue:44, serverValue:2199023}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=830453, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:22:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:22:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:50 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:22:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:50 INFO connection:71 - Opened connection [connectionId{localValue:43, serverValue:1612932}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1257425, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-06 11:22:50 INFO connection:71 - Opened connection [connectionId{localValue:45, serverValue:1944777}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1944777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG command:56 - Command execution completed -2016-05-06 11:22:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1944777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG command:56 - Command execution completed -2016-05-06 11:22:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1944777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG command:56 - Command execution completed -2016-05-06 11:22:50 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:22:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1944777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG command:56 - Command execution completed -2016-05-06 11:22:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1944777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG command:56 - Command execution completed -2016-05-06 11:22:50 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:22:50 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1944777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:22:50 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:22:50 INFO WorkspaceExplorerServiceImpl:178 - end time - 57 msc 0 sec -2016-05-06 11:22:50 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:22:50 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 11:22:50 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-06 11:22:50 DEBUG query:56 - Query completed -2016-05-06 11:22:50 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-06 11:22:50 DEBUG connection:56 - Closing connection connectionId{localValue:44, serverValue:2199023} -2016-05-06 11:22:50 DEBUG connection:56 - Closing connection connectionId{localValue:41, serverValue:323425} -2016-05-06 11:22:50 INFO connection:71 - Closed connection [connectionId{localValue:45, serverValue:1944777}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:22:50 DEBUG connection:56 - Closing connection connectionId{localValue:43, serverValue:1612932} -2016-05-06 11:22:50 DEBUG connection:56 - Closing connection connectionId{localValue:45, serverValue:1944777} -2016-05-06 11:22:50 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:22:50 DEBUG connection:56 - Closing connection connectionId{localValue:42, serverValue:1944776} -2016-05-06 11:22:50 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:22:50 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:22:50 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-06 11:22:51 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:51 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:51 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:51 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:22:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:22:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:51 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:51 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:51 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-06 11:22:51 DEBUG ServiceEngine:306 - get() - start -2016-05-06 11:22:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:51 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:51 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-06 11:22:51 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 11:22:51 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:22:51 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:22:51 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 11:22:51 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:22:51 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-06 11:22:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:51 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:51 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:22:51 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:22:51 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:22:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:22:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:51 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:51 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:51 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:22:51 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:22:51 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:22:51 INFO connection:71 - Opened connection [connectionId{localValue:46, serverValue:323426}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1126567, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:22:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:51 INFO connection:71 - Opened connection [connectionId{localValue:47, serverValue:1944778}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1463512, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:51 INFO connection:71 - Opened connection [connectionId{localValue:49, serverValue:2199024}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=915849, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:51 INFO connection:71 - Opened connection [connectionId{localValue:48, serverValue:1612933}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1213789, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:22:51 INFO connection:71 - Opened connection [connectionId{localValue:50, serverValue:1944779}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1944779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG command:56 - Command execution completed -2016-05-06 11:22:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1944779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG command:56 - Command execution completed -2016-05-06 11:22:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1944779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG command:56 - Command execution completed -2016-05-06 11:22:51 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-06 11:22:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1944779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG command:56 - Command execution completed -2016-05-06 11:22:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1944779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:51 DEBUG command:56 - Command execution completed -2016-05-06 11:22:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:50, serverValue:1944779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:22:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:22:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:52 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:52 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-06 11:22:52 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:22:52 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-06 11:22:52 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-06 11:22:52 INFO WorkspaceExplorerServiceImpl:178 - end time - 60 msc 0 sec -2016-05-06 11:22:52 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:22:52 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:22:52 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:22:52 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:22:52 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 11:22:52 DEBUG query:56 - Query completed -2016-05-06 11:22:52 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-06 11:22:52 DEBUG connection:56 - Closing connection connectionId{localValue:49, serverValue:2199024} -2016-05-06 11:22:52 DEBUG connection:56 - Closing connection connectionId{localValue:46, serverValue:323426} -2016-05-06 11:22:52 INFO connection:71 - Closed connection [connectionId{localValue:50, serverValue:1944779}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:22:52 DEBUG connection:56 - Closing connection connectionId{localValue:50, serverValue:1944779} -2016-05-06 11:22:52 DEBUG connection:56 - Closing connection connectionId{localValue:48, serverValue:1612933} -2016-05-06 11:22:52 DEBUG connection:56 - Closing connection connectionId{localValue:47, serverValue:1944778} -2016-05-06 11:22:52 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:22:52 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-06 11:22:52 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-06 11:22:52 INFO WorkspaceExplorerServiceImpl:491 - returning size: 3902486 -2016-05-06 11:22:53 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-06 11:22:53 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-06 11:22:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:22:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:22:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:22:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:53 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-06 11:22:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:22:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:22:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:53 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-06 11:22:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:22:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:22:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:53 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-06 11:22:53 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-06 11:22:53 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-06 11:22:53 INFO WorkspaceExplorerServiceImpl:491 - returning size: 1951243 -2016-05-06 11:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:22:54 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:22:54 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:22:54 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-06 11:22:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:54 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-06 11:22:54 DEBUG ServiceEngine:193 - get() - start -2016-05-06 11:22:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:54 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:54 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-06 11:22:54 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-06 11:22:54 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:22:54 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:22:54 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-06 11:22:54 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:22:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:54 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:54 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-06 11:22:54 DEBUG Operation:173 - get(String) - start -2016-05-06 11:22:54 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:22:54 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:22:54 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:22:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:22:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:22:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:22:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:51, serverValue:323428}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1359393, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:22:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:52, serverValue:1944782}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1134260, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:54, serverValue:2199025}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=763560, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:53, serverValue:1612936}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1153483, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:55, serverValue:1944783}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 11:22:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-06 11:22:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-06 11:22:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG query:56 - Query completed -2016-05-06 11:22:54 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-06 11:22:54 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 11:22:54 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-06 11:22:54 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG update:56 - Update completed -2016-05-06 11:22:54 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:55, serverValue:1944783}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG query:56 - Query completed -2016-05-06 11:22:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:22:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:22:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:22:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:22:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:22:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:22:54 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-06 11:22:54 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-06 11:22:54 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-06 11:22:54 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-06 11:22:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:54 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:54 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-06 11:22:54 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-06 11:22:54 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-06 11:22:54 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:22:54 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-06 11:22:54 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-06 11:22:54 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:22:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:22:54 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:22:54 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:22:54 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:22:54 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:22:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:22:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:22:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:22:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:57, serverValue:1944784}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:56, serverValue:323429}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1663367, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1770424, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:22:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:59, serverValue:2199026}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=835362, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:58, serverValue:1612937}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1336191, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-06 11:22:54 INFO connection:71 - Opened connection [connectionId{localValue:60, serverValue:1944785}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1944785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1944785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1944785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-06 11:22:54 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-06 11:22:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1944785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1944785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG command:56 - Command execution completed -2016-05-06 11:22:54 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-06 11:22:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:60, serverValue:1944785}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG query:56 - Query completed -2016-05-06 11:22:54 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-06 11:22:54 DEBUG connection:56 - Closing connection connectionId{localValue:59, serverValue:2199026} -2016-05-06 11:22:54 DEBUG connection:56 - Closing connection connectionId{localValue:56, serverValue:323429} -2016-05-06 11:22:54 INFO connection:71 - Closed connection [connectionId{localValue:60, serverValue:1944785}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:22:54 DEBUG connection:56 - Closing connection connectionId{localValue:60, serverValue:1944785} -2016-05-06 11:22:54 DEBUG connection:56 - Closing connection connectionId{localValue:58, serverValue:1612937} -2016-05-06 11:22:54 DEBUG connection:56 - Closing connection connectionId{localValue:57, serverValue:1944784} -2016-05-06 11:22:54 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:22:54 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-06 11:22:54 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-06 11:22:54 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-06 11:22:54 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-06 11:22:54 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-06 11:22:54 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-06 11:22:54 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-06 11:22:54 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-06 11:22:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:22:55 DEBUG connection:56 - Closing connection connectionId{localValue:54, serverValue:2199025} -2016-05-06 11:22:55 DEBUG connection:56 - Closing connection connectionId{localValue:53, serverValue:1612936} -2016-05-06 11:22:55 INFO connection:71 - Closed connection [connectionId{localValue:55, serverValue:1944783}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:22:55 DEBUG connection:56 - Closing connection connectionId{localValue:51, serverValue:323428} -2016-05-06 11:22:55 DEBUG connection:56 - Closing connection connectionId{localValue:55, serverValue:1944783} -2016-05-06 11:22:55 DEBUG connection:56 - Closing connection connectionId{localValue:52, serverValue:1944782} -2016-05-06 11:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:23:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:23:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:23:04 DEBUG DataMinerManagerServiceImpl:134 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[TabularListParameter [value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], ListParameter [type=java.lang.String, value=h1|h2, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]], hasImage=false]] -2016-05-06 11:23:04 DEBUG WPS2SM:325 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-06 11:23:04 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 11:23:04 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 11:23:04 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 11:23:04 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 11:23:04 DEBUG WPS2SM:235 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 11:23:04 DEBUG WPS2SM:236 - Machter find: true -2016-05-06 11:23:04 DEBUG WPS2SM:237 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-06 11:23:04 DEBUG WPS2SM:239 - Machter start: 31 -2016-05-06 11:23:04 DEBUG WPS2SM:241 - Machter end: 97 -2016-05-06 11:23:04 DEBUG WPS2SM:242 - Machter Group Count: 1 -2016-05-06 11:23:04 DEBUG WPS2SM:245 - Matcher separator: | -2016-05-06 11:23:04 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-06 11:23:04 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-06 11:23:04 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:23:04 DEBUG SClient4WPS:683 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 11:23:04 DEBUG WPS2SM:300 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-06 11:23:04 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:23:04 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:23:04 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 11:23:04 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 11:23:04 DEBUG WPS2SM:149 - Machter find: true -2016-05-06 11:23:04 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-06 11:23:04 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-06 11:23:04 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-06 11:23:04 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-06 11:23:04 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-06 11:23:04 DEBUG WPS2SM:339 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-06 11:23:04 DEBUG WPS2SM:340 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-06 11:23:04 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:23:04 DEBUG SClient4WPS:683 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-06 11:23:04 DEBUG SClient4WPS:691 - UserInputs[key=HCAF_Table_List, value=http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0] -2016-05-06 11:23:04 DEBUG SClient4WPS:691 - UserInputs[key=HCAF_Table_Names, value=h1|h2] -2016-05-06 11:23:04 DEBUG SClient4WPS:744 - Configuring Complex: HCAF_Table_List to: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0|http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-06 11:23:04 DEBUG StorageUtil:291 - SaveOnStorageInTemporalFile() -2016-05-06 11:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec in thread 34 -2016-05-06 11:23:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:23:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:23:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 21 ms -2016-05-06 11:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:23:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:23:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 11:23:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 23 ms -2016-05-06 11:23:04 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube/devsec/devVRE -2016-05-06 11:23:04 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-06 11:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:23:04 DEBUG StorageClient:517 - set scope: /gcube/devsec/devVRE -2016-05-06 11:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:23:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:23:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:23:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-06 11:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:23:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:23:04 DEBUG ServiceEngine:347 - put() - start -2016-05-06 11:23:04 INFO ServiceEngine:34 - file gCube parameter costructor: null null -2016-05-06 11:23:04 INFO ServiceEngine:44 - file gCube parameter before: null null -2016-05-06 11:23:04 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-06 11:23:04 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:23:04 DEBUG ServiceEngine:62 - path(String) - name: P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG ServiceEngine:72 - path(String) - path: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/ -2016-05-06 11:23:04 INFO ServiceEngine:52 - file gCube parameter after: null null -2016-05-06 11:23:04 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:23:04 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:23:04 INFO OperationFactory:39 - getOperation(String) - start upload -2016-05-06 11:23:04 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:23:04 DEBUG DirectoryBucket:35 - DirectoryBucket PATH: /DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-06 11:23:04 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:23:04 DEBUG Upload:45 - UPLOAD null author: DataMiner -2016-05-06 11:23:04 DEBUG Operation:98 - put(MyFile, boolean, boolean) - start -2016-05-06 11:23:04 DEBUG Operation:104 - file size: 1 -2016-05-06 11:23:04 DEBUG Operation:108 - PUT is chukn? false -2016-05-06 11:23:04 DEBUG Operation:122 - put(MyFile, boolean, boolean) - encode length: 1 -2016-05-06 11:23:04 DEBUG Operation:128 - len File: 1 len chunk: 1 -2016-05-06 11:23:04 DEBUG Operation:131 - put(MyFile, boolean, boolean) - number of chunks: 1 -2016-05-06 11:23:04 DEBUG Operation:139 - put(MyFile, boolean, boolean) - number of thread: 1 -2016-05-06 11:23:04 DEBUG Operation:143 - consumer have a bucket name: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG Operation:157 - NO THREAD POOL USED -2016-05-06 11:23:04 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:23:04 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:23:04 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:23:04 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:23:04 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:23:04 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:62, serverValue:1944791}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=3797465, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:61, serverValue:323433}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:65, serverValue:2199029}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=932327, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=913212, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:63, serverValue:1612939}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1221899, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:64, serverValue:1944792}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 INFO DefaultMongoClient:165 - MongoClient put method: OperationDefinition [operation=UPLOAD, localResource=INPUT_STREAM, remoteResource=PATH] -2016-05-06 11:23:04 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 INFO MongoIO:168 - remote object is not a validID : /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 INFO MongoIO:188 - object not found -2016-05-06 11:23:04 INFO DefaultMongoClient:189 - create new file /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:64, serverValue:1944792}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:65, serverValue:2199029} -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:61, serverValue:323433} -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:63, serverValue:1612939} -2016-05-06 11:23:04 INFO connection:71 - Closed connection [connectionId{localValue:64, serverValue:1944792}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:64, serverValue:1944792} -2016-05-06 11:23:04 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:62, serverValue:1944791} -2016-05-06 11:23:04 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:23:04 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:23:04 INFO cluster:71 - No server chosen by ReadPreferenceServerSelector{readPreference=primaryPreferred} from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:66, serverValue:323434}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1169979, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:67, serverValue:1944793}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1256037, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:69, serverValue:2199030}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=896296, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:68, serverValue:1612940}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1115874, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:70, serverValue:323435}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:70, serverValue:323435}] to server mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:71, serverValue:1944794}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:71, serverValue:1944794}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 INFO DefaultMongoClient:1491 - set last operation: UPLOAD -2016-05-06 11:23:04 DEBUG insert:56 - Inserting 1 documents into namespace remotefs.fs.chunks on connection [connectionId{localValue:71, serverValue:1944794}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG insert:56 - Insert completed -2016-05-06 11:23:04 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:71, serverValue:1944794}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG update:56 - Update completed -2016-05-06 11:23:04 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:71, serverValue:1944794}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG update:56 - Update completed -2016-05-06 11:23:04 DEBUG DefaultMongoClient:957 - Directory: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/ -2016-05-06 11:23:04 DEBUG DefaultMongoClient:960 - ObjectId: 572c627848434a251745ab6a -2016-05-06 11:23:04 INFO connection:71 - Closed connection [connectionId{localValue:70, serverValue:323435}] to mongo2-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:69, serverValue:2199030} -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:70, serverValue:323435} -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:66, serverValue:323434} -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:68, serverValue:1612940} -2016-05-06 11:23:04 INFO connection:71 - Closed connection [connectionId{localValue:71, serverValue:1944794}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:71, serverValue:1944794} -2016-05-06 11:23:04 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:67, serverValue:1944793} -2016-05-06 11:23:04 INFO DefaultMongoClient:863 - new file created with id: 572c627848434a251745ab6a -2016-05-06 11:23:04 DEBUG StorageUtil:300 - Storage id: 572c627848434a251745ab6a -2016-05-06 11:23:04 INFO ServiceEngine:34 - file gCube parameter costructor: public /gcube/devsec/devVRE -2016-05-06 11:23:04 INFO ServiceEngine:44 - file gCube parameter before: public /gcube/devsec/devVRE -2016-05-06 11:23:04 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-06 11:23:04 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:23:04 DEBUG ServiceEngine:62 - path(String) - name: P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG ServiceEngine:72 - path(String) - path: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/ -2016-05-06 11:23:04 INFO ServiceEngine:52 - file gCube parameter after: public /gcube/devsec/devVRE -2016-05-06 11:23:04 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:23:04 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= public file..getGcubeAccessType() public -2016-05-06 11:23:04 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-06 11:23:04 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:23:04 DEBUG BucketCoding:32 - Coding name: path: /DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml rootArea /VOLATILE/gcube/devsec/devVRE/public/ -2016-05-06 11:23:04 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:23:04 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:23:04 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:23:04 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:23:04 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:23:04 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:23:04 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:73, serverValue:323436}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:72, serverValue:1944795}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1502650, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1329100, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:75, serverValue:2199032}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=904185, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:74, serverValue:1612942}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1223053, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 11:23:04 INFO connection:71 - Opened connection [connectionId{localValue:76, serverValue:1944798}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:76, serverValue:1944798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:76, serverValue:1944798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:76, serverValue:1944798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml -2016-05-06 11:23:04 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:76, serverValue:1944798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:76, serverValue:1944798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG command:56 - Command execution completed -2016-05-06 11:23:04 INFO MongoIO:168 - remote object is not a validID : /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:76, serverValue:1944798}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:23:04 DEBUG query:56 - Query completed -2016-05-06 11:23:04 INFO MongoIO:186 - object found P_20160506_112304_4671.xml -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:75, serverValue:2199032} -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:73, serverValue:323436} -2016-05-06 11:23:04 INFO connection:71 - Closed connection [connectionId{localValue:76, serverValue:1944798}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:74, serverValue:1612942} -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:76, serverValue:1944798} -2016-05-06 11:23:04 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:23:04 DEBUG connection:56 - Closing connection connectionId{localValue:72, serverValue:1944795} -2016-05-06 11:23:04 DEBUG Operation:81 - PATH /VOLATILE/gcube/devsec/devVRE/public/DataMiner/AlgoritmsParameters/P_20160506_112304_4671.xml -2016-05-06 11:23:04 INFO Operation:55 - URL generated: smp://data-d.d4science.org/dHAUlQkmMaYSwnxokFgOoAup5wOrXw/HGmbP5+HKCzc= -2016-05-06 11:23:04 INFO Operation:57 - URL generated: smp://data-d.d4science.org/dHAUlQkmMaYSwnxokFgOoAup5wOrXw/HGmbP5+HKCzc= -2016-05-06 11:23:04 DEBUG Operation:87 - translating: http://data-d.d4science.org/dHAUlQkmMaYSwnxokFgOoAup5wOrXw/HGmbP5+HKCzc= -2016-05-06 11:23:04 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-06 11:23:04 DEBUG Operation:93 - get params: http://data-d.d4science.org/ dHAUlQkmMaYSwnxokFgOoAup5wOrXw/HGmbP5+HKCzc= -2016-05-06 11:23:04 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/ZEhBVWxRa21NYVlTd254b2tGZ09vQXVwNXdPclh3L0hHbWJQNStIS0N6Yz0 -2016-05-06 11:23:04 INFO Operation:65 - URL translated: http://data-d.d4science.org/ZEhBVWxRa21NYVlTd254b2tGZ09vQXVwNXdPclh3L0hHbWJQNStIS0N6Yz0 -2016-05-06 11:23:04 DEBUG StorageUtil:302 - Storage public link: http://data-d.d4science.org/ZEhBVWxRa21NYVlTd254b2tGZ09vQXVwNXdPclh3L0hHbWJQNStIS0N6Yz0 -2016-05-06 11:23:04 DEBUG SClient4WPS:727 - Configuring Literal: HCAF_Table_Names to: h1|h2 -2016-05-06 11:23:04 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:23:05 DEBUG SClient4WPS:388 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - - - HCAF_Table_List - - - - HCAF_Table_Names - - h1|h2 - - - - - - - non_deterministic_output - - - - -2016-05-06 11:23:05 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-06 11:23:05 DEBUG SClient4WPS:415 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=24795f1e-4d07-4bb2-97e9-8d3e6b051219 -2016-05-06 11:23:05 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:23:05 DEBUG SClient4WPS:787 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=24795f1e-4d07-4bb2-97e9-8d3e6b051219 -2016-05-06 11:23:05 DEBUG SClient4WPS:697 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=24795f1e-4d07-4bb2-97e9-8d3e6b051219 -2016-05-06 11:23:05 DEBUG SClient4WPS:708 - ComputationId: ComputationId [id=24795f1e-4d07-4bb2-97e9-8d3e6b051219, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=24795f1e-4d07-4bb2-97e9-8d3e6b051219] -2016-05-06 11:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:23:15 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:23:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:23:15 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=24795f1e-4d07-4bb2-97e9-8d3e6b051219, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=24795f1e-4d07-4bb2-97e9-8d3e6b051219] -2016-05-06 11:23:15 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 11:23:15 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 11:23:15 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=24795f1e-4d07-4bb2-97e9-8d3e6b051219 -2016-05-06 11:23:15 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:23:15 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:23:15 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:23:15 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - Process successful - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/ZUg0MDBURzh2YnR1OUtmNGlWNFVMSndLVlBSMDVzalpHbWJQNStIS0N6Yz0 - Average_Ice_Concentration - image/png - - - http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMUG9RWW1QQ3lPYnRHbWJQNStIS0N6Yz0 - Average_SST - image/png - - - http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMR3ZUWUJGTlM2U1VHbWJQNStIS0N6Yz0 - Average_Salinity - image/png - - - - - - - - -2016-05-06 11:23:15 DEBUG SClient4WPS:875 - WPS SUCCESS -2016-05-06 11:23:15 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-06 11:23:15 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=24795f1e-4d07-4bb2-97e9-8d3e6b051219, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=24795f1e-4d07-4bb2-97e9-8d3e6b051219] -2016-05-06 11:23:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:23:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:23:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:23:15 DEBUG SClient4WPS:436 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=24795f1e-4d07-4bb2-97e9-8d3e6b051219 -2016-05-06 11:23:15 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=24795f1e-4d07-4bb2-97e9-8d3e6b051219 -2016-05-06 11:23:15 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:23:15 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:23:15 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:23:15 DEBUG SClient4WPS:447 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - - - Process successful - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/ZUg0MDBURzh2YnR1OUtmNGlWNFVMSndLVlBSMDVzalpHbWJQNStIS0N6Yz0 - Average_Ice_Concentration - image/png - - - http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMUG9RWW1QQ3lPYnRHbWJQNStIS0N6Yz0 - Average_SST - image/png - - - http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMR3ZUWUJGTlM2U1VHbWJQNStIS0N6Yz0 - Average_Salinity - image/png - - - - - - - - -2016-05-06 11:23:15 DEBUG SClient4WPS:970 - Process Executed -2016-05-06 11:23:15 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 11:23:15 DEBUG SClient4WPS:574 - Node Name: ogr:FeatureCollection -2016-05-06 11:23:15 DEBUG SClient4WPS:574 - Node Name: gml:featureMember -2016-05-06 11:23:15 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:23:15 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/ZUg0MDBURzh2YnR1OUtmNGlWNFVMSndLVlBSMDVzalpHbWJQNStIS0N6Yz0 -2016-05-06 11:23:15 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Average_Ice_Concentration -2016-05-06 11:23:15 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-06 11:23:15 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:23:15 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMUG9RWW1QQ3lPYnRHbWJQNStIS0N6Yz0 -2016-05-06 11:23:15 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Average_SST -2016-05-06 11:23:15 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-06 11:23:15 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:23:15 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMR3ZUWUJGTlM2U1VHbWJQNStIS0N6Yz0 -2016-05-06 11:23:15 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Average_Salinity -2016-05-06 11:23:15 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-06 11:23:15 DEBUG SClient4WPS:516 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/ZUg0MDBURzh2YnR1OUtmNGlWNFVMSndLVlBSMDVzalpHbWJQNStIS0N6Yz0, description=Average_Ice_Concentration, mimeType=image/png] -2016-05-06 11:23:15 DEBUG SClient4WPS:516 - ResponseWPS Map: F1-->ResponseWPS [data=http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMUG9RWW1QQ3lPYnRHbWJQNStIS0N6Yz0, description=Average_SST, mimeType=image/png] -2016-05-06 11:23:15 DEBUG SClient4WPS:516 - ResponseWPS Map: F2-->ResponseWPS [data=http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMR3ZUWUJGTlM2U1VHbWJQNStIS0N6Yz0, description=Average_Salinity, mimeType=image/png] -2016-05-06 11:23:15 DEBUG SClient4WPS:1018 - Adding OBJ:F0 -2016-05-06 11:23:15 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/ZUg0MDBURzh2YnR1OUtmNGlWNFVMSndLVlBSMDVzalpHbWJQNStIS0N6Yz0, name=F0, description=Average_Ice_Concentration, typology=OBJECT] -2016-05-06 11:23:15 DEBUG SClient4WPS:1018 - Adding OBJ:F1 -2016-05-06 11:23:15 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMUG9RWW1QQ3lPYnRHbWJQNStIS0N6Yz0, name=F1, description=Average_SST, typology=OBJECT] -2016-05-06 11:23:15 DEBUG SClient4WPS:1018 - Adding OBJ:F2 -2016-05-06 11:23:15 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMR3ZUWUJGTlM2U1VHbWJQNStIS0N6Yz0, name=F2, description=Average_Salinity, typology=OBJECT] -2016-05-06 11:23:15 DEBUG Log:91 - Resoure: MapResource [map={F0=ImagesResource [link=http://data-d.d4science.org/ZUg0MDBURzh2YnR1OUtmNGlWNFVMSndLVlBSMDVzalpHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F0, getName()=Average_Ice_Concentration, getDescription()=Average_Ice_Concentration, getResourceType()=IMAGES], F1=ImagesResource [link=http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMUG9RWW1QQ3lPYnRHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F1, getName()=Average_SST, getDescription()=Average_SST, getResourceType()=IMAGES], F2=ImagesResource [link=http://data-d.d4science.org/MlJ4T1BKWU5TSE51OUtmNGlWNFVMR3ZUWUJGTlM2U1VHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F2, getName()=Average_Salinity, getDescription()=Average_Salinity, getResourceType()=IMAGES]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-06 11:23:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:23:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:24:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:24:34 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:25:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:25:29 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:26:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:26:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:27:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:27:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:28:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:28:14 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:29:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:29:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:30:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:30:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:30:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:30:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:31:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:31:54 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:32:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:32:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:33:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:33:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:34:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:34:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:35:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:35:34 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:36:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:36:29 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:37:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:37:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:37:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:37:16 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY -2016-05-06 11:37:16 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:37:16 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:37:17 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY - CMSY - An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner. - - - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - - - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - - - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-06 11:37:17 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-06 11:37:17 DEBUG SClient4WPS:303 - WPSClient->Input: - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - -2016-05-06 11:37:17 DEBUG SClient4WPS:303 - WPSClient->Input: - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - -2016-05-06 11:37:17 DEBUG SClient4WPS:303 - WPSClient->Input: - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - -2016-05-06 11:37:17 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-06 11:37:17 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-06 11:37:17 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:37:17 DEBUG WPS2SM:300 - Conversion to SM Type->IDsFile is a Literal Input -2016-05-06 11:37:17 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:37:17 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 11:37:17 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK -2016-05-06 11:37:17 DEBUG WPS2SM:340 - Conversion to SM Type->Name:IDsFile -2016-05-06 11:37:17 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:17 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-06 11:37:17 DEBUG WPS2SM:300 - Conversion to SM Type->StocksFile is a Literal Input -2016-05-06 11:37:17 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:37:17 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 11:37:17 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY -2016-05-06 11:37:17 DEBUG WPS2SM:340 - Conversion to SM Type->Name:StocksFile -2016-05-06 11:37:17 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:17 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-06 11:37:17 DEBUG WPS2SM:300 - Conversion to SM Type->SelectedStock is a Literal Input -2016-05-06 11:37:17 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:37:17 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 11:37:17 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The stock on which the procedure has to focus e.g. HLH_M07 -2016-05-06 11:37:17 DEBUG WPS2SM:340 - Conversion to SM Type->Name:SelectedStock -2016-05-06 11:37:17 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:17 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-06 11:37:17 DEBUG SClient4WPS:656 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT]] -2016-05-06 11:37:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:37:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:37:26 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:37:26 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:37:26 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION -2016-05-06 11:37:26 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:37:26 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:37:26 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION - SGVM_INTERPOLATION - An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare - - - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - - - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - - - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - - - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - - - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - - - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - - - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - - - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - - - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - - - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - - - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - - - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-06 11:37:26 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - -2016-05-06 11:37:26 DEBUG SClient4WPS:303 - WPSClient->Input: - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - -2016-05-06 11:37:26 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-06 11:37:26 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-06 11:37:26 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:37:26 DEBUG WPS2SM:325 - Conversion to SM Type->InputFile is a Complex Input -2016-05-06 11:37:26 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 11:37:26 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 11:37:26 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 11:37:26 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Input file in TACSAT format. E.g. http://goo.gl/i16kPw -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:InputFile -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: FileParameter [value=null, defaultMimeType=text/xml, supportedMimeTypes=[text/xml, application/d4science]] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->npoints is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The number of pings or positions required between each real or actual vessel position or ping -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:npoints -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->interval is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 120 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Average time in minutes between two adjacent datapoints -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:interval -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->margin is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Maximum deviation from specified interval to find adjacent datapoints (tolerance) -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:margin -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->res is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 100 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Number of points to use to create interpolation (including start and end point) -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:res -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->method is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: cHs -2016-05-06 11:37:26 DEBUG WPS2SM:311 - ValueType[]:[cHs, SL] -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Set to cHs for cubic Hermite spline or SL for Straight Line interpolation -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:method -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->fm is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The FM parameter in cubic interpolation -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:fm -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->distscale is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 20 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The DistScale parameter for cubic interpolation -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:distscale -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->sigline is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The Sigline parameter in cubic interpolation -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:sigline -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->minspeedThr is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A filter on the minimum speed to take into account for interpolation -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:minspeedThr -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->maxspeedThr is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 6 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A filter on the maximum speed to take into account for interpolation -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:maxspeedThr -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->headingAdjustment is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:headingAdjustment -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 11:37:26 DEBUG WPS2SM:300 - Conversion to SM Type->equalDist is a Literal Input -2016-05-06 11:37:26 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:37:26 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-06 11:37:26 DEBUG WPS2SM:311 - ValueType[]:[true, false] -2016-05-06 11:37:26 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Whether the number of positions returned should be equally spaced or not -2016-05-06 11:37:26 DEBUG WPS2SM:340 - Conversion to SM Type->Name:equalDist -2016-05-06 11:37:26 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:26 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-06 11:37:26 DEBUG SClient4WPS:656 - Parameters: [FileParameter [value=null, defaultMimeType=text/xml, supportedMimeTypes=[text/xml, application/d4science]], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT], Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM]] -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:37:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:37:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:37:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:37:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:37:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:37:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:37:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:37:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:37:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:37:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:37:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:37:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:37:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:37:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:37:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:37:26 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-06 11:37:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:37:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:37:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:37:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:37:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:37:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:37:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:37:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:37:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:37:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:37:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:37:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:37:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:37:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:37:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:37:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:37:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:37:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:37:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:37:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:37:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-06 11:37:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-06 11:37:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-06 11:37:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-06 11:37:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:37:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-06 11:37:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:37:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-06 11:37:27 INFO WorkspaceExplorerServiceImpl:138 - end time - 177 msc 0 sec -2016-05-06 11:37:27 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:37:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:37:56 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION -2016-05-06 11:37:56 DEBUG WPS2SM:325 - Conversion to SM Type->InputFile is a Complex Input -2016-05-06 11:37:56 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 11:37:56 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 11:37:56 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 11:37:56 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Input file in TACSAT format. E.g. http://goo.gl/i16kPw -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:InputFile -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: FileParameter [value=null, defaultMimeType=text/xml, supportedMimeTypes=[text/xml, application/d4science]] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->npoints is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The number of pings or positions required between each real or actual vessel position or ping -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:npoints -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->interval is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 120 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Average time in minutes between two adjacent datapoints -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:interval -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->margin is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Maximum deviation from specified interval to find adjacent datapoints (tolerance) -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:margin -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->res is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 100 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Number of points to use to create interpolation (including start and end point) -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:res -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->method is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: cHs -2016-05-06 11:37:56 DEBUG WPS2SM:311 - ValueType[]:[cHs, SL] -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Set to cHs for cubic Hermite spline or SL for Straight Line interpolation -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:method -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->fm is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The FM parameter in cubic interpolation -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:fm -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->distscale is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 20 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The DistScale parameter for cubic interpolation -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:distscale -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->sigline is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The Sigline parameter in cubic interpolation -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:sigline -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->minspeedThr is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A filter on the minimum speed to take into account for interpolation -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:minspeedThr -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->maxspeedThr is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 6 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A filter on the maximum speed to take into account for interpolation -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:maxspeedThr -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->headingAdjustment is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:headingAdjustment -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 11:37:56 DEBUG WPS2SM:300 - Conversion to SM Type->equalDist is a Literal Input -2016-05-06 11:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:37:56 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-06 11:37:56 DEBUG WPS2SM:311 - ValueType[]:[true, false] -2016-05-06 11:37:56 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Whether the number of positions returned should be equally spaced or not -2016-05-06 11:37:56 DEBUG WPS2SM:340 - Conversion to SM Type->Name:equalDist -2016-05-06 11:37:56 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:37:56 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-06 11:37:56 DEBUG SClient4WPS:656 - Parameters: [FileParameter [value=null, defaultMimeType=text/xml, supportedMimeTypes=[text/xml, application/d4science]], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT], Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM]] -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:37:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:37:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:37:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:37:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:37:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:37:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:37:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:37:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:37:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:37:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:37:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:37:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:37:56 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-06 11:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-06 11:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:37:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:37:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:37:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:37:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:37:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:37:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:37:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:37:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:37:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:37:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:37:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:37:56 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-06 11:37:56 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-06 11:37:56 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-06 11:37:56 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-06 11:37:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:37:56 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-06 11:37:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:37:56 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-06 11:37:56 INFO WorkspaceExplorerServiceImpl:138 - end time - 225 msc 0 sec -2016-05-06 11:37:56 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-06 11:38:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:38:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:38:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:38:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:38:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:38:41 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING -2016-05-06 11:38:41 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:38:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:38:42 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt - - - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - maxent_ - - - - SpeciesName - The name of the species to model and the occurrence records refer to - Name of the parameter: SpeciesName. The name of the species to model and the occurrence records refer to - - - - generic_species - - - - MaxIterations - The number of learning iterations of the MaxEnt algorithm - Name of the parameter: MaxIterations. The number of learning iterations of the MaxEnt algorithm - - - - 1000 - - - - DefaultPrevalence - A priori probability of presence at ordinary occurrence points - Name of the parameter: DefaultPrevalence. A priori probability of presence at ordinary occurrence points - - - - 0.5 - - - - OccurrencesTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrencesTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - LongitudeColumn - The column containing longitude values [the name of a column from OccurrencesTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrencesTable] - - - - decimallongitude - - - - LatitudeColumn - The column containing latitude values [the name of a column from OccurrencesTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrencesTable] - - - - decimallatitude - - - - XResolution - Model projection resolution on the X axis in decimal degrees - Name of the parameter: XResolution. Model projection resolution on the X axis in decimal degrees - - - - 1 - - - - YResolution - Model projection resolution on the Y axis in decimal degrees - Name of the parameter: YResolution. Model projection resolution on the Y axis in decimal degrees - - - - 1 - - - - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - - - - - - - Z - Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - - - TimeIndex - Time Index. The default is the first time indexed in the input environmental datasets - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed in the input environmental datasets - - - - 0 - - - - - - Best Threshold - Best threshold for transforming MaxEnt values into 0/1 probability assignments - Name of the parameter: Best Threshold. Best threshold for transforming MaxEnt values into 0/1 probability assignments - - - - - - Estimated Prevalence - The a posteriori estimated prevalence of the species - Name of the parameter: Estimated Prevalence. The a posteriori estimated prevalence of the species - - - - - - Variables contributions - The contribution of each variable to the MaxEnt values estimates - Name of the parameter: Variables contributions. The contribution of each variable to the MaxEnt values estimates - - - - - - Variables Permutations Importance - The importance of the permutations of the variables during the training - Name of the parameter: Variables Permutations Importance. The importance of the permutations of the variables during the training - - - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - Name of the parameter: ASCII Maps of the environmental layers for checking features aligments. ASCII Maps of the environmental layers for checking features aligments - - - - application/d4science - - - - - application/d4science - - - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable7. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-06 11:38:42 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - maxent_ - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - SpeciesName - The name of the species to model and the occurrence records refer to - Name of the parameter: SpeciesName. The name of the species to model and the occurrence records refer to - - - - generic_species - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - MaxIterations - The number of learning iterations of the MaxEnt algorithm - Name of the parameter: MaxIterations. The number of learning iterations of the MaxEnt algorithm - - - - 1000 - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - DefaultPrevalence - A priori probability of presence at ordinary occurrence points - Name of the parameter: DefaultPrevalence. A priori probability of presence at ordinary occurrence points - - - - 0.5 - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - OccurrencesTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrencesTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - LongitudeColumn - The column containing longitude values [the name of a column from OccurrencesTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrencesTable] - - - - decimallongitude - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - LatitudeColumn - The column containing latitude values [the name of a column from OccurrencesTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrencesTable] - - - - decimallatitude - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - XResolution - Model projection resolution on the X axis in decimal degrees - Name of the parameter: XResolution. Model projection resolution on the X axis in decimal degrees - - - - 1 - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - YResolution - Model projection resolution on the Y axis in decimal degrees - Name of the parameter: YResolution. Model projection resolution on the Y axis in decimal degrees - - - - 1 - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - - - - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - Z - Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - -2016-05-06 11:38:42 DEBUG SClient4WPS:303 - WPSClient->Input: - TimeIndex - Time Index. The default is the first time indexed in the input environmental datasets - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed in the input environmental datasets - - - - 0 - - -2016-05-06 11:38:42 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-06 11:38:42 DEBUG SClient4WPS:310 - WPSClient->Output: - Best Threshold - Best threshold for transforming MaxEnt values into 0/1 probability assignments - Name of the parameter: Best Threshold. Best threshold for transforming MaxEnt values into 0/1 probability assignments - - - - -2016-05-06 11:38:42 DEBUG SClient4WPS:310 - WPSClient->Output: - Estimated Prevalence - The a posteriori estimated prevalence of the species - Name of the parameter: Estimated Prevalence. The a posteriori estimated prevalence of the species - - - - -2016-05-06 11:38:42 DEBUG SClient4WPS:310 - WPSClient->Output: - Variables contributions - The contribution of each variable to the MaxEnt values estimates - Name of the parameter: Variables contributions. The contribution of each variable to the MaxEnt values estimates - - - - -2016-05-06 11:38:42 DEBUG SClient4WPS:310 - WPSClient->Output: - Variables Permutations Importance - The importance of the permutations of the variables during the training - Name of the parameter: Variables Permutations Importance. The importance of the permutations of the variables during the training - - - - -2016-05-06 11:38:42 DEBUG SClient4WPS:310 - WPSClient->Output: - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - Name of the parameter: ASCII Maps of the environmental layers for checking features aligments. ASCII Maps of the environmental layers for checking features aligments - - - - application/d4science - - - - - application/d4science - - - - -2016-05-06 11:38:42 DEBUG SClient4WPS:310 - WPSClient->Output: - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable7. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-06 11:38:42 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-06 11:38:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: maxent_ -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the table to produce -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OutputTableLabel -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->SpeciesName is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: generic_species -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the species to model and the occurrence records refer to -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:SpeciesName -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->MaxIterations is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: 1000 -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The number of learning iterations of the MaxEnt algorithm -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:MaxIterations -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->DefaultPrevalence is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A priori probability of presence at ordinary occurrence points -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:DefaultPrevalence -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-06 11:38:42 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencesTable is a Complex Input -2016-05-06 11:38:42 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 11:38:42 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 11:38:42 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 11:38:42 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencesTable -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->LongitudeColumn is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: decimallongitude -2016-05-06 11:38:42 DEBUG WPS2SM:129 - Machter title: The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude] -2016-05-06 11:38:42 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 11:38:42 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 11:38:42 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-06 11:38:42 DEBUG WPS2SM:133 - Machter end: 82 -2016-05-06 11:38:42 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 11:38:42 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing longitude values [the name of a column from OccurrencesTable] -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LongitudeColumn -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->LatitudeColumn is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: decimallatitude -2016-05-06 11:38:42 DEBUG WPS2SM:129 - Machter title: The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude] -2016-05-06 11:38:42 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 11:38:42 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 11:38:42 DEBUG WPS2SM:132 - Machter start: 39 -2016-05-06 11:38:42 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-06 11:38:42 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 11:38:42 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing latitude values [the name of a column from OccurrencesTable] -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LatitudeColumn -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->XResolution is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the X axis in decimal degrees -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:XResolution -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->YResolution is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the Y axis in decimal degrees -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:YResolution -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->Layers is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 11:38:42 DEBUG WPS2SM:148 - Machter title: The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 11:38:42 DEBUG WPS2SM:149 - Machter find: true -2016-05-06 11:38:42 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-06 11:38:42 DEBUG WPS2SM:151 - Machter start: 501 -2016-05-06 11:38:42 DEBUG WPS2SM:152 - Machter end: 536 -2016-05-06 11:38:42 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-06 11:38:42 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Layers -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->Z is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Z -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 11:38:42 DEBUG WPS2SM:300 - Conversion to SM Type->TimeIndex is a Literal Input -2016-05-06 11:38:42 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:38:42 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:38:42 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 11:38:42 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Time Index. The default is the first time indexed in the input environmental datasets -2016-05-06 11:38:42 DEBUG WPS2SM:340 - Conversion to SM Type->Name:TimeIndex -2016-05-06 11:38:42 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:38:42 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 11:38:42 DEBUG SClient4WPS:656 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN], Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN], ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:38:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:38:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:38:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:38:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:42 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-06 11:38:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:38:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:38:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:38:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:38:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:38:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:38:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:38:42 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:38:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:38:42 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:38:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:38:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:38:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:38:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:38:42 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:38:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:38:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:38:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:38:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:38:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-06 11:38:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-06 11:38:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-06 11:38:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-06 11:38:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:38:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-06 11:38:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 11:38:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-06 11:38:42 INFO WorkspaceExplorerServiceImpl:138 - end time - 236 msc 0 sec -2016-05-06 11:38:42 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-06 11:38:51 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:38:51 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:38:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:38:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:51 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:38:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:38:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:38:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:38:51 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:38:51 DEBUG ServiceEngine:306 - get() - start -2016-05-06 11:38:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:38:51 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:38:51 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-06 11:38:51 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-06 11:38:51 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:38:51 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:38:51 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 11:38:51 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:38:51 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 11:38:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:38:51 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:38:51 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:38:51 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:38:51 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:38:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:38:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:51 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:51 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:51 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:38:51 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:38:51 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:38:51 INFO connection:71 - Opened connection [connectionId{localValue:77, serverValue:324080}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1357206, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:38:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:51 INFO connection:71 - Opened connection [connectionId{localValue:78, serverValue:1945626}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1069500, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:51 INFO connection:71 - Opened connection [connectionId{localValue:80, serverValue:2199530}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=798986, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:38:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:38:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:38:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:38:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:51 INFO connection:71 - Opened connection [connectionId{localValue:79, serverValue:1613442}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1354285, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 11:38:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:38:51 INFO connection:71 - Opened connection [connectionId{localValue:81, serverValue:1945627}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:38:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:81, serverValue:1945627}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG command:56 - Command execution completed -2016-05-06 11:38:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:81, serverValue:1945627}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG command:56 - Command execution completed -2016-05-06 11:38:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:81, serverValue:1945627}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG command:56 - Command execution completed -2016-05-06 11:38:51 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:38:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:81, serverValue:1945627}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG command:56 - Command execution completed -2016-05-06 11:38:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:81, serverValue:1945627}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 DEBUG command:56 - Command execution completed -2016-05-06 11:38:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:81, serverValue:1945627}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:51 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:38:51 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 11:38:51 INFO WorkspaceExplorerServiceImpl:178 - end time - 53 msc 0 sec -2016-05-06 11:38:51 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:38:51 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:38:51 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 11:38:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 11:38:52 DEBUG query:56 - Query completed -2016-05-06 11:38:52 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-06 11:38:52 DEBUG connection:56 - Closing connection connectionId{localValue:80, serverValue:2199530} -2016-05-06 11:38:52 DEBUG connection:56 - Closing connection connectionId{localValue:77, serverValue:324080} -2016-05-06 11:38:52 DEBUG connection:56 - Closing connection connectionId{localValue:79, serverValue:1613442} -2016-05-06 11:38:52 INFO connection:71 - Closed connection [connectionId{localValue:81, serverValue:1945627}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:38:52 DEBUG connection:56 - Closing connection connectionId{localValue:81, serverValue:1945627} -2016-05-06 11:38:52 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:38:52 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:38:52 DEBUG connection:56 - Closing connection connectionId{localValue:78, serverValue:1945626} -2016-05-06 11:38:52 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 11:38:52 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-06 11:38:53 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 11:38:53 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 11:38:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:38:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:38:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:38:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:53 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 11:38:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:38:53 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:38:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:38:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:53 INFO JCRServlets:267 - Servlet getItemById e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 11:38:53 INFO JCRServlets:267 - Servlet getItemById e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 11:38:53 INFO JCRServlets:142 - Calling servlet getChildrenById e8663e07-6286-4212-920c-54dd7bbf205c by giancarlo.panichi -2016-05-06 11:38:53 DEBUG ServiceEngine:306 - get() - start -2016-05-06 11:38:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:38:53 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:38:53 DEBUG ServiceEngine:62 - path(String) - name: Max_Ent_Niche_Modelling -2016-05-06 11:38:53 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 11:38:53 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:38:53 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:38:53 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 11:38:53 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:38:53 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ -2016-05-06 11:38:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:38:53 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:38:53 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:38:53 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:38:53 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:38:53 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:38:53 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:53 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:53 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:53 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:38:53 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:38:53 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:38:53 INFO connection:71 - Opened connection [connectionId{localValue:83, serverValue:1945630}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1402235, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:53 INFO connection:71 - Opened connection [connectionId{localValue:82, serverValue:324081}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:38:53 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:53 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:53 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1391741, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:53 INFO connection:71 - Opened connection [connectionId{localValue:85, serverValue:2199531}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=870113, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:53 INFO connection:71 - Opened connection [connectionId{localValue:84, serverValue:1613443}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1149586, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-06 11:38:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:38:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:38:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:38:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:38:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:38:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:38:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:53 INFO connection:71 - Opened connection [connectionId{localValue:86, serverValue:1945631}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:86, serverValue:1945631}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 DEBUG command:56 - Command execution completed -2016-05-06 11:38:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:86, serverValue:1945631}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 DEBUG command:56 - Command execution completed -2016-05-06 11:38:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:86, serverValue:1945631}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 INFO JCRServlets:267 - Servlet getItemById e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 11:38:53 INFO JCRServlets:267 - Servlet getItemById e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 11:38:53 DEBUG command:56 - Command execution completed -2016-05-06 11:38:53 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling -2016-05-06 11:38:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:86, serverValue:1945631}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 DEBUG command:56 - Command execution completed -2016-05-06 11:38:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:86, serverValue:1945631}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 DEBUG command:56 - Command execution completed -2016-05-06 11:38:53 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:86, serverValue:1945631}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:53 INFO JCRServlets:142 - Calling servlet getChildrenById e8663e07-6286-4212-920c-54dd7bbf205c by giancarlo.panichi -2016-05-06 11:38:53 INFO JCRServlets:697 - Calling Servlet get Parents By Id e8663e07-6286-4212-920c-54dd7bbf205c by giancarlo.panichi -2016-05-06 11:38:53 INFO WorkspaceExplorerServiceImpl:178 - end time - 52 msc 0 sec -2016-05-06 11:38:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 11:38:54 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=e8663e07-6286-4212-920c-54dd7bbf205c, name=Max_Ent_Niche_Modelling, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:38:54 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:38:54 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:38:54 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 11:38:54 DEBUG query:56 - Query completed -2016-05-06 11:38:54 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-06 11:38:54 DEBUG connection:56 - Closing connection connectionId{localValue:85, serverValue:2199531} -2016-05-06 11:38:54 INFO connection:71 - Closed connection [connectionId{localValue:86, serverValue:1945631}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:38:54 DEBUG connection:56 - Closing connection connectionId{localValue:82, serverValue:324081} -2016-05-06 11:38:54 DEBUG connection:56 - Closing connection connectionId{localValue:86, serverValue:1945631} -2016-05-06 11:38:54 DEBUG connection:56 - Closing connection connectionId{localValue:84, serverValue:1613443} -2016-05-06 11:38:54 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:38:54 INFO DefaultMongoClient:1329 - getFolderTotalVolume 96531 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling -2016-05-06 11:38:54 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling -2016-05-06 11:38:54 INFO WorkspaceExplorerServiceImpl:491 - returning size: 96531 -2016-05-06 11:38:54 DEBUG connection:56 - Closing connection connectionId{localValue:83, serverValue:1945630} -2016-05-06 11:38:54 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 11:38:54 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 11:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:38:54 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:38:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:54 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 11:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:38:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:38:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:54 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 11:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:38:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:38:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:54 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 11:38:54 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 11:38:54 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 11:38:54 INFO WorkspaceExplorerServiceImpl:491 - returning size: 96531 -2016-05-06 11:38:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:38:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:38:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:38:56 DEBUG DataMinerManagerServiceImpl:241 - retrieveTableInformation(): Item [id=8e60c918-6148-4c5b-9fd0-2dcefa90fa90, name=Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 18:11:30 CET 2016] -2016-05-06 11:38:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:56 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 11:38:56 DEBUG ServiceEngine:193 - get() - start -2016-05-06 11:38:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:38:56 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:38:56 DEBUG ServiceEngine:62 - path(String) - name: Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ -2016-05-06 11:38:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:38:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 11:38:56 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-06 11:38:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:38:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:38:56 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:38:56 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 DEBUG Operation:173 - get(String) - start -2016-05-06 11:38:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:38:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:38:56 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:38:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:38:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:38:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:38:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:87, serverValue:324083}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:88, serverValue:1945632}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1142515, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:38:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1153900, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:90, serverValue:2199532}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1033649, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:89, serverValue:1613445}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1623048, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:91, serverValue:1945633}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 11:38:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG query:56 - Query completed -2016-05-06 11:38:56 INFO MongoIO:186 - object found Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 11:38:56 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-06 11:38:56 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG update:56 - Update completed -2016-05-06 11:38:56 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:91, serverValue:1945633}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG query:56 - Query completed -2016-05-06 11:38:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:38:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:38:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:38:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:38:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:38:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:38:56 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 11:38:56 INFO JCRWorkspaceItem:998 - get PublicLink for item: Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-06 11:38:56 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-06 11:38:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:38:56 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:38:56 DEBUG ServiceEngine:62 - path(String) - name: Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ -2016-05-06 11:38:56 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-06 11:38:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 11:38:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-06 11:38:56 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-06 11:38:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 11:38:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 11:38:56 DEBUG BucketCoding:42 - coding name done -2016-05-06 11:38:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 11:38:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 11:38:56 DEBUG MongoIO:77 - open mongo connection -2016-05-06 11:38:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 11:38:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@2600054b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@43d77fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@790b25a8, socketFactory=javax.net.DefaultSocketFactory@4ad576ad, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 11:38:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 11:38:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:92, serverValue:324084}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1035312, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 11:38:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:95, serverValue:2199533}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=752284, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:93, serverValue:1945634}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1662169, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:94, serverValue:1613446}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1127852, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-06 11:38:56 INFO connection:71 - Opened connection [connectionId{localValue:96, serverValue:1945635}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:96, serverValue:1945635}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:96, serverValue:1945635}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:96, serverValue:1945635}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:96, serverValue:1945635}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:96, serverValue:1945635}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG command:56 - Command execution completed -2016-05-06 11:38:56 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:96, serverValue:1945635}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG query:56 - Query completed -2016-05-06 11:38:56 INFO MongoIO:186 - object found Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:95, serverValue:2199533} -2016-05-06 11:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:92, serverValue:324084} -2016-05-06 11:38:56 INFO connection:71 - Closed connection [connectionId{localValue:96, serverValue:1945635}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:94, serverValue:1613446} -2016-05-06 11:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:96, serverValue:1945635} -2016-05-06 11:38:56 INFO MongoIO:508 - Mongo has been closed -2016-05-06 11:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:93, serverValue:1945634} -2016-05-06 11:38:56 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 11:38:56 INFO Operation:55 - URL generated: smp://data-d.d4science.org/mVHKwdH+VOfVW2bfDjeAkGie6DAgHZc0GmbP5+HKCzc= -2016-05-06 11:38:56 INFO Operation:57 - URL generated: smp://data-d.d4science.org/mVHKwdH+VOfVW2bfDjeAkGie6DAgHZc0GmbP5+HKCzc= -2016-05-06 11:38:56 DEBUG Operation:87 - translating: http://data-d.d4science.org/mVHKwdH+VOfVW2bfDjeAkGie6DAgHZc0GmbP5+HKCzc= -2016-05-06 11:38:56 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-06 11:38:56 DEBUG Operation:93 - get params: http://data-d.d4science.org/ mVHKwdH+VOfVW2bfDjeAkGie6DAgHZc0GmbP5+HKCzc= -2016-05-06 11:38:56 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0 -2016-05-06 11:38:56 INFO Operation:65 - URL translated: http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0 -2016-05-06 11:38:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-06 11:39:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:39:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:39:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-06 11:39:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-06 11:39:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:39:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-06 11:39:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 11:39:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-06 11:39:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:39:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:39:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 11:39:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-06 11:39:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 11:39:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-06 11:39:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 11:39:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-06 11:39:16 DEBUG connection:56 - Closing connection connectionId{localValue:90, serverValue:2199532} -2016-05-06 11:39:16 INFO connection:71 - Closed connection [connectionId{localValue:91, serverValue:1945633}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 11:39:16 DEBUG connection:56 - Closing connection connectionId{localValue:89, serverValue:1613445} -2016-05-06 11:39:16 DEBUG connection:56 - Closing connection connectionId{localValue:87, serverValue:324083} -2016-05-06 11:39:16 DEBUG connection:56 - Closing connection connectionId{localValue:91, serverValue:1945633} -2016-05-06 11:39:16 DEBUG connection:56 - Closing connection connectionId{localValue:88, serverValue:1945632} -2016-05-06 11:40:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:40:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:40:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:40:10 DEBUG DataMinerManagerServiceImpl:134 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=maxent_, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=Latimeria, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=1000, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=0.5, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], TabularParameter [tableName=http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN], Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN], ObjectParameter [type=java.lang.Double, defaultValue=1, value=1.0, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=1, value=1.0, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ListParameter [type=java.lang.String, value=fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.Double, defaultValue=0, value=0.0, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=0, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]], hasImage=false]] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: maxent_ -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the table to produce -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OutputTableLabel -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->SpeciesName is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: generic_species -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the species to model and the occurrence records refer to -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:SpeciesName -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->MaxIterations is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: 1000 -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The number of learning iterations of the MaxEnt algorithm -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:MaxIterations -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->DefaultPrevalence is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A priori probability of presence at ordinary occurrence points -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:DefaultPrevalence -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-06 11:40:10 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencesTable is a Complex Input -2016-05-06 11:40:10 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 11:40:10 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 11:40:10 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 11:40:10 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencesTable -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->LongitudeColumn is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: decimallongitude -2016-05-06 11:40:10 DEBUG WPS2SM:129 - Machter title: The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude] -2016-05-06 11:40:10 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 11:40:10 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 11:40:10 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-06 11:40:10 DEBUG WPS2SM:133 - Machter end: 82 -2016-05-06 11:40:10 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 11:40:10 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing longitude values [the name of a column from OccurrencesTable] -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LongitudeColumn -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->LatitudeColumn is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: decimallatitude -2016-05-06 11:40:10 DEBUG WPS2SM:129 - Machter title: The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude] -2016-05-06 11:40:10 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 11:40:10 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 11:40:10 DEBUG WPS2SM:132 - Machter start: 39 -2016-05-06 11:40:10 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-06 11:40:10 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 11:40:10 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing latitude values [the name of a column from OccurrencesTable] -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LatitudeColumn -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->XResolution is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the X axis in decimal degrees -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:XResolution -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->YResolution is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the Y axis in decimal degrees -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:YResolution -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->Layers is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 11:40:10 DEBUG WPS2SM:148 - Machter title: The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 11:40:10 DEBUG WPS2SM:149 - Machter find: true -2016-05-06 11:40:10 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-06 11:40:10 DEBUG WPS2SM:151 - Machter start: 501 -2016-05-06 11:40:10 DEBUG WPS2SM:152 - Machter end: 536 -2016-05-06 11:40:10 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-06 11:40:10 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Layers -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->Z is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Z -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 11:40:10 DEBUG WPS2SM:300 - Conversion to SM Type->TimeIndex is a Literal Input -2016-05-06 11:40:10 DEBUG WPS2SM:92 - WPS type: -2016-05-06 11:40:10 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 11:40:10 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 11:40:10 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Time Index. The default is the first time indexed in the input environmental datasets -2016-05-06 11:40:10 DEBUG WPS2SM:340 - Conversion to SM Type->Name:TimeIndex -2016-05-06 11:40:10 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 11:40:10 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=OutputTableLabel, value=maxent_] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=SpeciesName, value=Latimeria] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=MaxIterations, value=1000] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=DefaultPrevalence, value=0.5] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=OccurrencesTable, value=http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=LongitudeColumn, value=decimalLongitude] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=LatitudeColumn, value=decimalLatitude] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=XResolution, value=1.0] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=YResolution, value=1.0] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=Layers, value=fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=Z, value=0.0] -2016-05-06 11:40:10 DEBUG SClient4WPS:691 - UserInputs[key=TimeIndex, value=0] -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: OutputTableLabel to: maxent_ -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: SpeciesName to: Latimeria -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: MaxIterations to: 1000 -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: DefaultPrevalence to: 0.5 -2016-05-06 11:40:10 DEBUG SClient4WPS:744 - Configuring Complex: OccurrencesTable to: http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0 -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: LongitudeColumn to: decimalLongitude -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: LatitudeColumn to: decimalLatitude -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: XResolution to: 1.0 -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: YResolution to: 1.0 -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: Layers to: fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31 -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: Z to: 0.0 -2016-05-06 11:40:10 DEBUG SClient4WPS:727 - Configuring Literal: TimeIndex to: 0 -2016-05-06 11:40:10 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:40:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:40:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:40:10 DEBUG SClient4WPS:388 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - - - OutputTableLabel - - maxent_ - - - - SpeciesName - - Latimeria - - - - MaxIterations - - 1000 - - - - DefaultPrevalence - - 0.5 - - - - OccurrencesTable - - - - LongitudeColumn - - decimalLongitude - - - - LatitudeColumn - - decimalLatitude - - - - XResolution - - 1.0 - - - - YResolution - - 1.0 - - - - Layers - - fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31 - - - - Z - - 0.0 - - - - TimeIndex - - 0 - - - - - - - ASCII Maps of the environmental layers for checking features aligments - - - OutputTable7 - - - non_deterministic_output - - - - -2016-05-06 11:40:10 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-06 11:40:10 DEBUG SClient4WPS:415 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:40:10 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:40:10 DEBUG SClient4WPS:787 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:40:10 DEBUG SClient4WPS:697 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:40:10 DEBUG SClient4WPS:708 - ComputationId: ComputationId [id=6071f298-fe8e-4530-8325-04792901214d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d] -2016-05-06 11:40:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:40:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:40:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:40:21 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=6071f298-fe8e-4530-8325-04792901214d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d] -2016-05-06 11:40:21 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 11:40:21 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 11:40:21 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:40:21 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:40:21 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:40:21 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:40:21 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 11:40:21 DEBUG SClient4WPS:889 - WPS STATUS:10.0 -2016-05-06 11:40:21 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=10.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 11:40:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:40:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:40:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:40:31 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=6071f298-fe8e-4530-8325-04792901214d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d] -2016-05-06 11:40:31 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 11:40:31 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 11:40:31 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:40:31 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:40:31 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:40:31 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:40:31 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 11:40:31 DEBUG SClient4WPS:889 - WPS STATUS:30.0 -2016-05-06 11:40:31 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=30.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 11:40:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:40:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:40:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:40:41 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=6071f298-fe8e-4530-8325-04792901214d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d] -2016-05-06 11:40:41 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 11:40:41 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 11:40:41 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:40:41 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:40:41 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:40:41 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:40:41 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 11:40:41 DEBUG SClient4WPS:889 - WPS STATUS:30.0 -2016-05-06 11:40:41 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=30.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 11:40:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:40:51 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:40:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:40:51 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=6071f298-fe8e-4530-8325-04792901214d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d] -2016-05-06 11:40:51 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 11:40:51 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 11:40:51 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:40:51 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:40:51 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:40:51 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:40:51 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 11:40:51 DEBUG SClient4WPS:889 - WPS STATUS:70.0 -2016-05-06 11:40:51 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=70.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 11:41:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:41:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:41:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:41:01 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=6071f298-fe8e-4530-8325-04792901214d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d] -2016-05-06 11:41:01 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 11:41:01 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 11:41:01 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:41:01 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:41:01 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:41:02 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:41:02 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 11:41:02 DEBUG SClient4WPS:889 - WPS STATUS:80.0 -2016-05-06 11:41:02 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=80.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 11:41:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:41:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:41:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-06 11:41:11 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:41:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:41:11 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=6071f298-fe8e-4530-8325-04792901214d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d] -2016-05-06 11:41:11 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 11:41:11 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 11:41:11 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:41:11 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:41:11 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:41:11 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:41:11 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 11:41:11 DEBUG SClient4WPS:889 - WPS STATUS:80.0 -2016-05-06 11:41:11 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=80.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 11:41:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:41:21 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:41:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:41:21 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=6071f298-fe8e-4530-8325-04792901214d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d] -2016-05-06 11:41:21 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 11:41:21 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 11:41:21 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:41:21 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:41:21 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:41:21 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:41:21 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - Process successful - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - - _______________________________________________ __ ____ ______________________________________ _______________ - - - - - - -_______________________ _____ __ _ _ _ _____ ___________________________________________________________________________ ______ ___ __ ____ ___ ___________________________________________________ -_____________________ _____ ___ __ _ _ __ _____ ___ __ _ ______________________________________________________________ _ ____ ____________________________________________________ -________________ _____ ______ _ _____ _ ____________ _____ _______________________________________________________ _______ _ ____________________________________________________ -______________________ ______ _____ __ ______________ ____ _______________________________________________ _________ __________ _ __ ___________________________________________________ -__________________ __ _ ____ ____ ___ ______ __ ____ ____ _ _ _____________________________________ _ ________ _______________ _ ________________________________________________ -__________________ __ _____ _ _ ___ ___ _ ______ _________ _ __ _ ____________________________________ __________ _____________ ______________ _______________________________ -___________________ _ ____ _ _ ___ ___ __ _____ ___ __ ___ __ _________________________________ ____________ ___________ _________ ________________________________ -____________________ ______ _ ___ ______________ ___ __ ___ _ ____ _ _____________________________________________ ________ _______ _________________________________ -_________________________ __ _ _ ______ ____ ___________ __ __ _ ______________________________________________ __________ _____ _________________________________ -________________________ _______ __ _ ___ _ ___ __ __ _ _________________________________________________ _____ _______________________________________ -___________________________ ________ __ __________ __ ______ _ __ _______________________________________ ______ ____________________________________ -____________________________ ______ _____ _____ __ _ ____ ____ _______________ ____________________________ _ _____________________________________ -_____________________________________ _____ _ ___ ______ ________ __ ___________ _____________________________ ___________________________________ -____________________________________ ____ _ _ ___________ _________ _______________________ _ ____________________________________ -___________________________________ _____ _ ________ ___________ ____________________________ ________________________________________ -________________________________ ____ _ __________ _______________ ________________________ __ ________________________________________ -_______________________________ ___ _ _____________ _ _________________________________________ ______________________________________ -_______________________________ ___ __ _____________ _____________________________________________ ______________________________________ -_____________________________ _ _ ______________ ___________________________________ __ _______ ________________________ -_____________________________ ____ _ ____________ _ ____________________________ _ _ ______ _______________________ -__________________________ _ _ _______ ___________ ____________________________ __ ____________ ____________________ -______________________ _ _ ________ _ __________ __________________________ ______ __ ______ _________________________ -_______________ ______ _________ _ _________ __________________________ __ _ ___ _________________________ -____________ _________ ____________ _____________ __________________________ ______________________ -___________ ___________ __________ ___________ __________________________ ______________________ -__________ ________________ ___ __ ________ _ __________________________ ______________ __ -__________ ______________ ______ _ __________ _ __________________________ ___ ________________ -________ ____________________ ___ _ _______ ___________________________ ___ _ ___ ____ -___________ __________________ ________ _ ________ _____________________________ _ _ _ - ___________ ____________________ _____ ___________ __________________________________ __ - _ __ __________________ __ _ ___________ ___________________________________ ___ __ - ____ _________________ ___ _____________ _____________ ____________________ ____ __ _ -___ __________ _________________ __________________ ______________ _________________ ________ __ -____________ _ _ ______________ _________________ _______________ _________________ _____ ____ -____________ _ __________ ____________ ___________________ __________________ ____________________ ____ __ ___ -____________ _ _____________ _ ____________ ____ ______________ ________________________________________ _______ _ __ -_____________ __ _______________ ___________ __ ______________ _ ___________________________________ _____ _ __ ___ _ ______ -___________ ___ ____________________ _______ __ ________________ ___________________________________________ __ _____ __ _______ ________ -________________ ___ _ ___________________ _ ______ ________________________________________________________________ _ ____ __________ _____ ________________ -____________________ _ ________________________ ___ __________________________________________________ _ ___________ __ _____ ___________________ ________________ -___________________ _________________________ _ ___ __________________________________________________ _________ _____ __________________ ________________ -_________________ ___________________________ ___ __ ___________________________________________________ ___________ ___ _ __ ________________ ________________ -________________ __________________________________ ___ _________________________________________________ __________ __________________ _________________ -____________________________________________________ __ _____________________________________________ __ ______ ______________ ___ _____________ -____________ ______________________________________ ___________________________________________ _ ___ ____________ ____________________ -_____________________________________________________ _ ____________________________________________ __ __ _ ____________ _____________________ -_______________________________________________________ __ ___________________________________________ _____ _ _ ____________ _____________________ -_______________________________________________________ ____ _____ _________________________________________________ ____ _ ___________ _______________________ -________________________________________________________ _ ______ __________________________________________________ ___ __ ____________________________________ -________________________________________________________ ______ _______________________________________________ ___ __ ________________________________________ -________________________________________________________ ____ ______ _________________________________________________ __________ ___ ____________________________________ -________________________________________________________ __ __________________________________________________________ _ ____________ __________________________________________ -________________________________________________________ _ _____________________________________________________________ ___ _____________ _____ _____________________________________ -________________________________________________________ ____ ______________________________________________________________ ___ ____ ______________ _______ ___________________________________ -________________________________________________________ _____________________________________________________________ ________ _____ ___ _ __________ ____________________________________ -________________________________________________________ _____________________________________________________________ __________ __ __ __ _ __________ _______________________________________ -_________________________________________________________ ________________________________________________________________ _______ ______ ___ ___ ___ __ ____________ ______________________________________ -_________________________________________________________ __________________________________________________________________ ________ ______ ____ ___ _______ ____________ ______________________________________ -__________________________________________________________ _______________________________________________ ___________________ _____________ ______ ____ _ _____ __________ _______________________________________ -___________________________________________________________ ___________________________________________________________________ ________ _ ____________ ______ _ __ _____ _________ _______________________________________ -___________________________________________________________ ___________________________________________________________________________ _________________________ _______ _______ _______________________________________ -____________________________________________________________ _______________________________________________________________________ _________________________ ______ ____ _ _ __________________________________________ -_______________________________________________________________ ________________________________________________________________________ ________________________ _____ ___ _______________________________________________ -________________________________________________________________ _______________________________________________________________________ ____ ___________ __________ _________________________________________________ -________________________________________________________________ _ _______________________________________________________________________ __ _ __________________________________________________________ -_________________________________________________________________ _ ___ ______ _______________________________________________________________________ ___ __________________________________________________________ -__________________________________________________________________ _ ______________ _______________________________________________________________ _____ _ ___ ___________________________________________________________ -___________________________________________________________________ __ _______________ ___________________________________________________________________ __ ____ _ ____________________________________________________________ -____________________________________________________________________ __ ________________ __________________________________________________________________ __ ____ __ _____________________________________________________________ -_____________________________________________________________________ ___ __________________________________________________________________________________ __ __ ___________ __ __ ________________________________________________________ -__________________________________________________________________________ ______________ _______________________________________________________________ ___ _________ ____ ___________________________________________________________ -______________________ ____________________________________________________ _________ ___ ____ ___________________________________________________________ __ __________ _ _____ __ _____________________________________________________________________ -___________________________________________________________________________ ______ __________ __________________________________________________________ ____ _______________ _______ __________________________________________________________________________ -_____________________________________________________________________________ _ __________ ___ _ _ _________________________________________________ ____ ________________ __________ ___ __________ ___________________________________________________________ -________________________________________________________________________________ ________________________________________________________________________ __ _ ___________________ ____________ _____________ __________________________________________________________ -_______________________________________________________________________________________ ____________________________________________________________________ ___ _____________________ _ _________________ ____________ ___________________________________________________________ -_________________________________________________________________________________________ __________________________________________________________________ _ ________________________ _ __________________ ___________ _________________________________________________________ -_____________________________________________________________________________________________ _____________ _____________________________________________________ _ ____________________________ __ ____________ _____ _ _______________________________________________________________________ -_______________________________________________________________________________________________ _________ _ _____________________________________________________ ____ ______________________ ___ __________________ ____ ______________ _ _________________________________________ __ __________ -________________________________________________________________________________________________ _______ ________________________________________________ ______________________ ___ ___________________ ______ ____________ ___ _________________________________________________________ -__________________________________________________________________________________________________ __ ______________________________________________ _______________________ ____ __ _________________ _______________________ ______________________________________________________ -_______________________________________________________________________________________________________ ______________________________________________ ________________________ _______ __________________ _______________ _______ _______________________________________________________ -_______________________________________________________________________________________________________ ___________________________________________ ____ _______ ________________________ ______________________ __ ____________ _____________________________________________________________ -_______________________________________________________________________________________________________ _____________________________________________________________ __________________________ ________________________ __ __________ _______________________________________________________________ -______________________________________________________________________________________________________ ____________________________________________________________ ___________________________ _________________________ _ _______ _________ ____________________________________________________ -____________________________________________________________________________________________________ ____________________________________________________________ _____________________________ __________________________ ______ ___ ___ ____________________________________________________ -____________________________________________________________________________________________________ _______________________________________________________ _______________________________ _________________________ _ _____ __ _ _______ ______________________________________________ -____________________________________________________________________________________________________ _____________________________________________________ ________________________________ ____________________________ ____ ___ ___________ __ ________________________________________ -____________________________________________________________________________________________________ __________________________________________________ _________________________________ _____________________________ ________ ____ _ ____________ ________ ___________________________ -____________________________________________________________________________________________________ _______________________________________________ __________________________________ _______________________________ _____________ __ _______________ ____ __ _________________________ -_____________________________________________________________________________________________________ ________________________________________________ _________________________________ _________________________________ ________________________ _________ _______________________ -______________________________________________________________________________________________________ _________________________________________________ _________________________________ __________________________________________ ___ _____________ ___ ____________ ___________________ -______________________________________________________________________________________________________ __________________________________________________ _________________________________ _______________________________________________ __ ________________________ ______________________________ -_______________________________________________________________________________________________________ ___________________________________________________ __ _____________________________ _________________________________________________________ _ _________ _____________________________________ -________________________________________________________________________________________________________ ____________________________________________________ ________ _______________________ _________________________________________________________ _____ _____________________________________ -_________________________________________________________________________________________________________ ____________________________________________________ _______ _______________________ ____________________________________________________ _ ______ ___________________________________ -__________________________________________________________________________________________________________ ___________________________________________________ _____ _______________________ ___________________________________________________ ____ ___________________________________ -_____________________________________________________________________________________________________________ ___________________________________________________ ______ _______________________ _________________________________________________ __ __________________________________ -______________________________________________________________________________________________________________ ____________________________________________________ _________ ________________________ ________________________________________________ __________________________________ -______________________________________________________________________________________________________________ ______________________________________________________ _________ ________________________ _____________________________________________ _______________________________ -______________________________________________________________________________________________________________ _______________________________________________________ ________ _________________________ _________________________________________ _______________________________ -______________________________________________________________________________________________________________ ___________________________________________________________ ________ _________________________ _________________________________________ _____________________________ -______________________________________________________________________________________________________________ ______________________________________________________________ _________ __________________________ ________________________________________ ____________________________ -______________________________________________________________________________________________________________ _______________________________________________________________ ________________________________________ _________________________________________ ___________________________ -______________________________________________________________________________________________________________ ________________________________________________________________ ________________________________________ _________________________________________ ___________________________ -_____________________________________________________________________________________________________________ __________________________________________________________________ _________________________________________ _________________________________________ ___________________________ -_____________________________________________________________________________________________________________ ___________________________________________________________________ __________________________________________ __________________________________________ ___________________________ -_____________________________________________________________________________________________________________ _____________________________________________________________________ ___________________________________________ __________________________________________ ___________________________ -_____________________________________________________________________________________________________________ ______________________________________________________________________ _____________________________________________ __________________________________________ _________ ____________________________ -_____________________________________________________________________________________________________________ ________________________________________________________________________ ________________________________________________ __________________________________________ ________________ _ _____________________________ -____________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ _________________________________________________________________ _______________________ ______ -____________________________________________________________________________________________________________ _________________________________________________________________________________________________________________________________ ___________________________________________________________________ ________________________ _____ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ ___________________________________________________________________ __________________________ ____ -___________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________ _____________________________________________________________________________________________________ __ -___________________________________________________________________________________________________________ _______________________________________________________________________________________________________________________________________ ______________________________________________________________________________________________________ ___ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ _______________________________________________________________________ ________________________ ____ -__________________________________________________________________________________________________________ _ ________________________________________________________________________________________________________________________________________ ________________________________________________________________________ _______________________ _______ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ _________________________________________________________________________ ______________________ _______ -__________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ ______________________________________________________________________________________________ _________ -__________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ _____________________________________________________________________________________________ __________ -__________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ ______________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ ________ ___________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -___________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -___________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________ ___________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_______________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_______________________________________________________________________________________________________________________ _ _________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -____________________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________ ______________________ ___________________________________ _____________________________________________ -__________________________________________________________________________________________________________________ _ _____________________________________________________________________________________________________________________________________ ______________________ ________ _____________________ _____________________________________________ -__________________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ ________________ ________ _ ______ ___ _ _______ ____ __________________________________________ -________________________________________________________________________________________________________________ _____________________________________________________________________________________________________________ _ _______________ _________ ____________________________________ -_______________________________________________________________________________________________________________ _ ___________________________________________________________________________________________________________ _ ________ ________ ___________________________________ -_________________________________________________________________________________________________________________ ______________________________________________________________________________________________________ ___ ______ ________________________________ -_________________________________________________________________________________________________________________ ______________________________________________________________________________________________ ______ _ _____ _________________________ -____________________________________________________________________________________________________________ __ ___________________________________________________________________________________________ ____ ____ _______________________ -____________________________________________________________________________________________________________ _ ___________________________________________________________________________ ___________ ____________________ -__________________________________________________________________________________________________________ _______________________________________________________ _________________ -_________________________________________________________________________________________________________ ___________________________________________________ ____________ -___________________________________________________________________________________________________________ ________________________________________________ ___________ -_________________________________________________________________________________ _______________________ ________________________________________________ _________ -______________________________________________________________________________ ______________________ ______________________________________________ __________ -_____________________________________________________________________________ __________ ___ ____________________________________________ __________ -_____________________________________________________________________________ _____ ________________________________________ ___________ -_____________________________________________________ ______________ ______ __ _________________________________________ _____________ -_____________________________________________________ _ _ ____ ______ _________________________________________ ______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - id,csquarecode,x,y,z,time,fvalue -1,5918:100,-180,-90,0,0,0.0749916 -2,5917:209,-179,-90,0,0,0.0750201 -3,5917:208,-178,-90,0,0,0.0750201 -4,5917:207,-177,-90,0,0,0.0750416 -5,5917:206,-176,-90,0,0,0.0750488 -6,5917:205,-175,-90,0,0,0.0750558 -7,5917:104,-174,-90,0,0,0.0750702 -8,5917:103,-173,-90,0,0,0.0750773 -9,5917:102,-172,-90,0,0,0.0750843 -10,5917:101,-171,-90,0,0,0.0750843 -11,5917:100,-170,-90,0,0,0.0750915 -12,5916:209,-169,-90,0,0,0.0750987 -13,5916:208,-168,-90,0,0,0.0751059 -14,5916:207,-167,-90,0,0,0.0751128 -15,5916:206,-166,-90,0,0,0.0751059 -16,5916:205,-165,-90,0,0,0.0751059 -17,5916:104,-164,-90,0,0,0.0751059 -18,5916:103,-163,-90,0,0,0.0751128 -19,5916:102,-162,-90,0,0,0.0751128 -20,5916:101,-161,-90,0,0,0.07512 -21,5916:100,-160,-90,0,0,0.0751344 -22,5915:209,-159,-90,0,0,0.0751416 -23,5915:208,-158,-90,0,0,0.0751558 -24,5915:207,-157,-90,0,0,0.0751486 -25,5915:206,-156,-90,0,0,0.0751558 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-37796,1800:131,0,83,0,0,0.0777084 -37797,1800:131,1,83,0,0,0.0778634 -37798,1800:132,2,83,0,0,0.0776421 -37799,1800:133,3,83,0,0,0.0779149 -37800,1800:134,4,83,0,0,0.0781292 -37801,1800:235,5,83,0,0,0.0797805 -37802,1800:236,6,83,0,0,0.0799466 -37803,1800:237,7,83,0,0,0.0786861 -37804,1800:238,8,83,0,0,0.0762196 -37805,1800:239,9,83,0,0,0.0767785 -37806,1801:130,10,83,0,0,0.0780405 -37807,1801:131,11,83,0,0,0.0794416 -37808,1801:132,12,83,0,0,0.0802948 -37809,1801:133,13,83,0,0,0.081448 -37810,1801:134,14,83,0,0,0.0822588 -37811,1801:235,15,83,0,0,0.0829675 -37812,1801:236,16,83,0,0,0.0827254 -37813,1801:237,17,83,0,0,0.0852147 -37814,1801:238,18,83,0,0,0.0885065 -37815,1802:130,20,83,0,0,0.0895146 -37816,1802:131,21,83,0,0,0.0895146 -37817,1802:132,22,83,0,0,0.089523 -37818,1802:133,23,83,0,0,0.089523 -37819,1802:134,24,83,0,0,0.0895146 -37820,1802:235,25,83,0,0,0.0895146 -37821,1802:237,27,83,0,0,0.0894895 -37822,1802:238,28,83,0,0,0.0895062 -37823,1802:239,29,83,0,0,0.0895312 -37824,1811:237,117,83,0,0,0.089523 -37825,1811:238,118,83,0,0,0.0895062 -37826,1812:131,121,83,0,0,0.089523 -37827,1812:132,122,83,0,0,0.089523 -37828,1812:133,123,83,0,0,0.089523 -37829,1812:134,124,83,0,0,0.089523 -37830,1812:236,126,83,0,0,0.0895146 -37831,1812:237,127,83,0,0,0.0894977 -37832,1812:238,128,83,0,0,0.0885232 -37833,1813:130,130,83,0,0,0.0831004 -37834,1813:131,131,83,0,0,0.08222 -37835,1813:132,132,83,0,0,0.0818873 -37836,1813:133,133,83,0,0,0.0807971 -37837,1813:134,134,83,0,0,0.0799542 -37838,1813:235,135,83,0,0,0.0793815 -37839,1813:236,136,83,0,0,0.0776055 -37840,1813:237,137,83,0,0,0.0763208 -37841,1813:238,138,83,0,0,0.0769315 -37842,1813:239,139,83,0,0,0.080128 -37843,1814:130,140,83,0,0,0.0801509 -37844,1814:131,141,83,0,0,0.0799542 -37845,1814:132,142,83,0,0,0.0773852 -37846,1814:133,143,83,0,0,0.0765457 -37847,1814:134,144,83,0,0,0.0763281 -37848,1814:235,145,83,0,0,0.0764079 -37849,1814:236,146,83,0,0,0.0765022 -37850,1814:237,147,83,0,0,0.0766038 -37851,1814:238,148,83,0,0,0.0766111 -37852,1814:239,149,83,0,0,0.0763933 -37853,1815:130,150,83,0,0,0.0762196 -37854,1815:131,151,83,0,0,0.0763933 -37855,1815:132,152,83,0,0,0.0756932 -37856,1815:133,153,83,0,0,0.075442 -37857,1815:134,154,83,0,0,0.0753203 -37858,1815:235,155,83,0,0,0.0753561 -37859,1815:236,156,83,0,0,0.0753631 -37860,1815:237,157,83,0,0,0.0753775 -37861,1815:238,158,83,0,0,0.0753847 -37862,1815:239,159,83,0,0,0.0755781 -37863,1816:130,160,83,0,0,0.0756932 -37864,1816:131,161,83,0,0,0.0756645 -37865,1816:132,162,83,0,0,0.07565 -37866,1816:133,163,83,0,0,0.0757507 -37867,1816:134,164,83,0,0,0.0758874 -37868,1816:235,165,83,0,0,0.0759956 -37869,1816:236,166,83,0,0,0.0760606 -37870,1816:237,167,83,0,0,0.0761618 -37871,1816:238,168,83,0,0,0.0762123 -37872,1816:239,169,83,0,0,0.0762413 -37873,1817:130,170,83,0,0,0.0762848 -37874,1817:131,171,83,0,0,0.0762918 -37875,1817:132,172,83,0,0,0.0762848 -37876,1817:133,173,83,0,0,0.0762848 -37877,1817:134,174,83,0,0,0.0762848 -37878,1817:235,175,83,0,0,0.0762848 -37879,1817:236,176,83,0,0,0.0762918 -37880,1817:237,177,83,0,0,0.0762918 -37881,1817:238,178,83,0,0,0.0762848 -37882,1817:239,179,83,0,0,0.0762918 -37883,1818:130,180,83,0,0,0.0762775 -37884,7918:100,-180,90,0,0,0.0749916 -37885,7917:209,-179,90,0,0,0.0750201 -37886,7917:208,-178,90,0,0,0.0750201 -37887,7917:207,-177,90,0,0,0.0750416 -37888,7917:206,-176,90,0,0,0.0750488 -37889,7917:205,-175,90,0,0,0.0750558 -37890,7917:104,-174,90,0,0,0.0750702 -37891,7917:103,-173,90,0,0,0.0750773 -37892,7917:102,-172,90,0,0,0.0750843 -37893,7917:101,-171,90,0,0,0.0750843 -37894,7917:100,-170,90,0,0,0.0750915 -37895,7916:209,-169,90,0,0,0.0750987 -37896,7916:208,-168,90,0,0,0.0751059 -37897,7916:207,-167,90,0,0,0.0751128 -37898,7916:206,-166,90,0,0,0.0751059 -37899,7916:205,-165,90,0,0,0.0751059 -37900,7916:104,-164,90,0,0,0.0751059 -37901,7916:103,-163,90,0,0,0.0751128 -37902,7916:102,-162,90,0,0,0.0751128 -37903,7916:101,-161,90,0,0,0.07512 -37904,7916:100,-160,90,0,0,0.0751344 -37905,7915:209,-159,90,0,0,0.0751416 -37906,7915:208,-158,90,0,0,0.0751558 -37907,7915:207,-157,90,0,0,0.0751486 -37908,7915:206,-156,90,0,0,0.0751558 -37909,7915:205,-155,90,0,0,0.075163 -37910,7915:104,-154,90,0,0,0.0751486 -37911,7915:103,-153,90,0,0,0.075163 -37912,7915:102,-152,90,0,0,0.0751558 -37913,7915:101,-151,90,0,0,0.0751416 -37914,7915:100,-150,90,0,0,0.0751416 -37915,7914:209,-149,90,0,0,0.0751344 -37916,7914:208,-148,90,0,0,0.0751344 -37917,7914:207,-147,90,0,0,0.0751272 -37918,7914:206,-146,90,0,0,0.07512 -37919,7914:205,-145,90,0,0,0.07512 -37920,7914:104,-144,90,0,0,0.0751128 -37921,7914:103,-143,90,0,0,0.07512 -37922,7914:102,-142,90,0,0,0.0751128 -37923,7914:101,-141,90,0,0,0.0751128 -37924,7914:100,-140,90,0,0,0.07512 -37925,7913:209,-139,90,0,0,0.07512 -37926,7913:208,-138,90,0,0,0.0751272 -37927,7913:207,-137,90,0,0,0.07527 -37928,7913:206,-136,90,0,0,0.0758155 -37929,7913:205,-135,90,0,0,0.0776421 -37930,7913:104,-134,90,0,0,0.0779001 -37931,7911:100,-110,90,0,0,0.0832649 -37932,7910:209,-109,90,0,0,0.0880188 -37933,7910:206,-106,90,0,0,0.0759162 -37934,7910:205,-105,90,0,0,0.0753775 -37935,7910:104,-104,90,0,0,0.0768514 -37936,7910:103,-103,90,0,0,0.0810109 -37937,7906:101,-61,90,0,0,0.0753489 -37938,7906:100,-60,90,0,0,0.075163 -37939,7905:209,-59,90,0,0,0.0750201 -37940,7905:208,-58,90,0,0,0.074949 -37941,7905:207,-57,90,0,0,0.0749346 -37942,7905:206,-56,90,0,0,0.0749275 -37943,7905:205,-55,90,0,0,0.0749346 -37944,7905:104,-54,90,0,0,0.0749346 -37945,7905:103,-53,90,0,0,0.0749418 -37946,7905:102,-52,90,0,0,0.0749562 -37947,7905:101,-51,90,0,0,0.0749631 -37948,7905:100,-50,90,0,0,0.0749631 -37949,7904:209,-49,90,0,0,0.0749631 -37950,7904:208,-48,90,0,0,0.074949 -37951,7904:207,-47,90,0,0,0.0749703 -37952,7904:206,-46,90,0,0,0.0749988 -37953,7904:205,-45,90,0,0,0.0750273 -37954,7904:104,-44,90,0,0,0.0750201 -37955,7904:103,-43,90,0,0,0.0750201 -37956,7904:102,-42,90,0,0,0.0750131 -37957,7904:101,-41,90,0,0,0.0750201 -37958,7904:100,-40,90,0,0,0.0750345 -37959,7903:209,-39,90,0,0,0.0750345 -37960,7903:208,-38,90,0,0,0.0750345 -37961,7903:207,-37,90,0,0,0.0750345 -37962,7903:206,-36,90,0,0,0.0750345 -37963,7903:205,-35,90,0,0,0.0750416 -37964,7903:104,-34,90,0,0,0.0750345 -37965,7903:103,-33,90,0,0,0.0750345 -37966,7903:102,-32,90,0,0,0.0750416 -37967,7903:101,-31,90,0,0,0.0750488 -37968,7903:100,-30,90,0,0,0.0750488 -37969,7902:209,-29,90,0,0,0.0750488 -37970,7902:208,-28,90,0,0,0.0750345 -37971,7902:207,-27,90,0,0,0.0750201 -37972,7902:206,-26,90,0,0,0.0761183 -37973,7902:205,-25,90,0,0,0.0756715 -37974,7902:104,-24,90,0,0,0.0789397 -37975,1916:206,166,90,0,0,0.0752487 -37976,1916:207,167,90,0,0,0.075063 -37977,1916:208,168,90,0,0,0.0749846 -37978,1916:209,169,90,0,0,0.074899 -37979,1917:100,170,90,0,0,0.074892 -37980,1917:101,171,90,0,0,0.0748777 -37981,1917:102,172,90,0,0,0.0807894 -37982,1917:103,173,90,0,0,0.0878209 -37983,1917:104,174,90,0,0,0.087558 -37984,1917:205,175,90,0,0,0.0873776 -37985,1917:206,176,90,0,0,0.0863183 -37986,1917:207,177,90,0,0,0.0752844 -37987,1917:208,178,90,0,0,0.0748849 -37988,1917:209,179,90,0,0,0.074949 -37989,1918:100,180,90,0,0,0.0749916 - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/ZFZ2WWxZTlE4Q3R1OUtmNGlWNFVMUFhoZVlDNStTVDJHbWJQNStIS0N6Yz0 - The warnings from the underlying MaxEnt model - text/csv - - - http://data-d.d4science.org/OXhhdUF6MTN4VUZ1OUtmNGlWNFVMTSs1R2F4NVRsMlZHbWJQNStIS0N6Yz0 - ASCII Maps of the environmental layers for checking features aligments - text/csv - - - http://data-d.d4science.org/RlVOTU12QWxXSFZ1OUtmNGlWNFVMTWg4OGhtc09TZkFHbWJQNStIS0N6Yz0 - World Thumbnail - image/png - - - http://data-d.d4science.org/ZFgvV1M2SEQySjF1OUtmNGlWNFVMTW0vTzArMDhlb3dHbWJQNStIS0N6Yz0 - ROC Curve - image/png - - - http://data-d.d4science.org/MXI0K1cvaklVa051OUtmNGlWNFVMRlUvN3FaWWl3Y0NHbWJQNStIS0N6Yz0 - Omission-Commission Curve - image/png - - - http://data-d.d4science.org/cks0OTc1eXFrQjl1OUtmNGlWNFVMRGI3ZS9WTklRMEhHbWJQNStIS0N6Yz0 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - text/csv - - - - - - - - -2016-05-06 11:41:22 DEBUG SClient4WPS:875 - WPS SUCCESS -2016-05-06 11:41:22 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-06 11:41:22 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=6071f298-fe8e-4530-8325-04792901214d, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d] -2016-05-06 11:41:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:41:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:41:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:41:22 DEBUG SClient4WPS:436 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:41:22 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=6071f298-fe8e-4530-8325-04792901214d -2016-05-06 11:41:22 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:41:22 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 11:41:22 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 11:41:22 DEBUG SClient4WPS:447 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - Process successful - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - - _______________________________________________ __ ____ ______________________________________ _______________ - - - - - - -_______________________ _____ __ _ _ _ _____ ___________________________________________________________________________ ______ ___ __ ____ ___ ___________________________________________________ -_____________________ _____ ___ __ _ _ __ _____ ___ __ _ ______________________________________________________________ _ ____ ____________________________________________________ -________________ _____ ______ _ _____ _ ____________ _____ _______________________________________________________ _______ _ ____________________________________________________ -______________________ ______ _____ __ ______________ ____ _______________________________________________ _________ __________ _ __ ___________________________________________________ -__________________ __ _ ____ ____ ___ ______ __ ____ ____ _ _ _____________________________________ _ ________ _______________ _ ________________________________________________ -__________________ __ _____ _ _ ___ ___ _ ______ _________ _ __ _ ____________________________________ __________ _____________ ______________ _______________________________ -___________________ _ ____ _ _ ___ ___ __ _____ ___ __ ___ __ _________________________________ ____________ ___________ _________ ________________________________ -____________________ ______ _ ___ ______________ ___ __ ___ _ ____ _ _____________________________________________ ________ _______ _________________________________ -_________________________ __ _ _ ______ ____ ___________ __ __ _ ______________________________________________ __________ _____ _________________________________ -________________________ _______ __ _ ___ _ ___ __ __ _ _________________________________________________ _____ _______________________________________ -___________________________ ________ __ __________ __ ______ _ __ _______________________________________ ______ ____________________________________ -____________________________ ______ _____ _____ __ _ ____ ____ _______________ ____________________________ _ _____________________________________ -_____________________________________ _____ _ ___ ______ ________ __ ___________ _____________________________ ___________________________________ -____________________________________ ____ _ _ ___________ _________ _______________________ _ ____________________________________ -___________________________________ _____ _ ________ ___________ ____________________________ ________________________________________ -________________________________ ____ _ __________ _______________ ________________________ __ ________________________________________ -_______________________________ ___ _ _____________ _ _________________________________________ ______________________________________ -_______________________________ ___ __ _____________ _____________________________________________ ______________________________________ -_____________________________ _ _ ______________ ___________________________________ __ _______ ________________________ -_____________________________ ____ _ ____________ _ ____________________________ _ _ ______ _______________________ -__________________________ _ _ _______ ___________ ____________________________ __ ____________ ____________________ -______________________ _ _ ________ _ __________ __________________________ ______ __ ______ _________________________ -_______________ ______ _________ _ _________ __________________________ __ _ ___ _________________________ -____________ _________ ____________ _____________ __________________________ ______________________ -___________ ___________ __________ ___________ __________________________ ______________________ -__________ ________________ ___ __ ________ _ __________________________ ______________ __ -__________ ______________ ______ _ __________ _ __________________________ ___ ________________ -________ ____________________ ___ _ _______ ___________________________ ___ _ ___ ____ -___________ __________________ ________ _ ________ _____________________________ _ _ _ - ___________ ____________________ _____ ___________ __________________________________ __ - _ __ __________________ __ _ ___________ ___________________________________ ___ __ - ____ _________________ ___ _____________ _____________ ____________________ ____ __ _ -___ __________ _________________ __________________ ______________ _________________ ________ __ -____________ _ _ ______________ _________________ _______________ _________________ _____ ____ -____________ _ __________ ____________ ___________________ __________________ ____________________ ____ __ ___ -____________ _ _____________ _ ____________ ____ ______________ ________________________________________ _______ _ __ -_____________ __ _______________ ___________ __ ______________ _ ___________________________________ _____ _ __ ___ _ ______ -___________ ___ ____________________ _______ __ ________________ ___________________________________________ __ _____ __ _______ ________ -________________ ___ _ ___________________ _ ______ ________________________________________________________________ _ ____ __________ _____ ________________ -____________________ _ ________________________ ___ __________________________________________________ _ ___________ __ _____ ___________________ ________________ -___________________ _________________________ _ ___ __________________________________________________ _________ _____ __________________ ________________ -_________________ ___________________________ ___ __ ___________________________________________________ ___________ ___ _ __ ________________ ________________ -________________ __________________________________ ___ _________________________________________________ __________ __________________ _________________ -____________________________________________________ __ _____________________________________________ __ ______ ______________ ___ _____________ -____________ ______________________________________ ___________________________________________ _ ___ ____________ ____________________ -_____________________________________________________ _ ____________________________________________ __ __ _ ____________ _____________________ -_______________________________________________________ __ ___________________________________________ _____ _ _ ____________ _____________________ -_______________________________________________________ ____ _____ _________________________________________________ ____ _ ___________ _______________________ -________________________________________________________ _ ______ __________________________________________________ ___ __ ____________________________________ -________________________________________________________ ______ _______________________________________________ ___ __ ________________________________________ -________________________________________________________ ____ ______ _________________________________________________ __________ ___ ____________________________________ -________________________________________________________ __ __________________________________________________________ _ ____________ __________________________________________ -________________________________________________________ _ _____________________________________________________________ ___ _____________ _____ _____________________________________ -________________________________________________________ ____ ______________________________________________________________ ___ ____ ______________ _______ ___________________________________ -________________________________________________________ _____________________________________________________________ ________ _____ ___ _ __________ ____________________________________ -________________________________________________________ _____________________________________________________________ __________ __ __ __ _ __________ _______________________________________ -_________________________________________________________ ________________________________________________________________ _______ ______ ___ ___ ___ __ ____________ ______________________________________ -_________________________________________________________ __________________________________________________________________ ________ ______ ____ ___ _______ ____________ ______________________________________ -__________________________________________________________ _______________________________________________ ___________________ _____________ ______ ____ _ _____ __________ _______________________________________ -___________________________________________________________ ___________________________________________________________________ ________ _ ____________ ______ _ __ _____ _________ _______________________________________ -___________________________________________________________ ___________________________________________________________________________ _________________________ _______ _______ _______________________________________ -____________________________________________________________ _______________________________________________________________________ _________________________ ______ ____ _ _ __________________________________________ -_______________________________________________________________ ________________________________________________________________________ ________________________ _____ ___ _______________________________________________ -________________________________________________________________ _______________________________________________________________________ ____ ___________ __________ _________________________________________________ -________________________________________________________________ _ _______________________________________________________________________ __ _ __________________________________________________________ -_________________________________________________________________ _ ___ ______ _______________________________________________________________________ ___ __________________________________________________________ -__________________________________________________________________ _ ______________ _______________________________________________________________ _____ _ ___ ___________________________________________________________ -___________________________________________________________________ __ _______________ ___________________________________________________________________ __ ____ _ ____________________________________________________________ -____________________________________________________________________ __ ________________ __________________________________________________________________ __ ____ __ _____________________________________________________________ -_____________________________________________________________________ ___ __________________________________________________________________________________ __ __ ___________ __ __ ________________________________________________________ -__________________________________________________________________________ ______________ _______________________________________________________________ ___ _________ ____ ___________________________________________________________ -______________________ ____________________________________________________ _________ ___ ____ ___________________________________________________________ __ __________ _ _____ __ _____________________________________________________________________ -___________________________________________________________________________ ______ __________ __________________________________________________________ ____ _______________ _______ __________________________________________________________________________ -_____________________________________________________________________________ _ __________ ___ _ _ _________________________________________________ ____ ________________ __________ ___ __________ ___________________________________________________________ -________________________________________________________________________________ ________________________________________________________________________ __ _ ___________________ ____________ _____________ __________________________________________________________ -_______________________________________________________________________________________ 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______________________ ______________________________________________ __________ -_____________________________________________________________________________ __________ ___ ____________________________________________ __________ -_____________________________________________________________________________ _____ ________________________________________ ___________ -_____________________________________________________ ______________ ______ __ _________________________________________ _____________ -_____________________________________________________ _ _ ____ ______ _________________________________________ ______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - id,csquarecode,x,y,z,time,fvalue -1,5918:100,-180,-90,0,0,0.0749916 -2,5917:209,-179,-90,0,0,0.0750201 -3,5917:208,-178,-90,0,0,0.0750201 -4,5917:207,-177,-90,0,0,0.0750416 -5,5917:206,-176,-90,0,0,0.0750488 -6,5917:205,-175,-90,0,0,0.0750558 -7,5917:104,-174,-90,0,0,0.0750702 -8,5917:103,-173,-90,0,0,0.0750773 -9,5917:102,-172,-90,0,0,0.0750843 -10,5917:101,-171,-90,0,0,0.0750843 -11,5917:100,-170,-90,0,0,0.0750915 -12,5916:209,-169,-90,0,0,0.0750987 -13,5916:208,-168,-90,0,0,0.0751059 -14,5916:207,-167,-90,0,0,0.0751128 -15,5916:206,-166,-90,0,0,0.0751059 -16,5916:205,-165,-90,0,0,0.0751059 -17,5916:104,-164,-90,0,0,0.0751059 -18,5916:103,-163,-90,0,0,0.0751128 -19,5916:102,-162,-90,0,0,0.0751128 -20,5916:101,-161,-90,0,0,0.07512 -21,5916:100,-160,-90,0,0,0.0751344 -22,5915:209,-159,-90,0,0,0.0751416 -23,5915:208,-158,-90,0,0,0.0751558 -24,5915:207,-157,-90,0,0,0.0751486 -25,5915:206,-156,-90,0,0,0.0751558 -26,5915:205,-155,-90,0,0,0.075163 -27,5915:104,-154,-90,0,0,0.0751486 -28,5915:103,-153,-90,0,0,0.075163 -29,5915:102,-152,-90,0,0,0.0751558 -30,5915:101,-151,-90,0,0,0.0751416 -31,5915:100,-150,-90,0,0,0.0751416 -32,5914:209,-149,-90,0,0,0.0751344 -33,5914:208,-148,-90,0,0,0.0751344 -34,5914:207,-147,-90,0,0,0.0751272 -35,5914:206,-146,-90,0,0,0.07512 -36,5914:205,-145,-90,0,0,0.07512 -37,5914:104,-144,-90,0,0,0.0751128 -38,5914:103,-143,-90,0,0,0.07512 -39,5914:102,-142,-90,0,0,0.0751128 -40,5914:101,-141,-90,0,0,0.0751128 -41,5914:100,-140,-90,0,0,0.07512 -42,5913:209,-139,-90,0,0,0.07512 -43,5913:208,-138,-90,0,0,0.0751272 -44,5913:207,-137,-90,0,0,0.07527 -45,5913:206,-136,-90,0,0,0.0758155 -46,5913:205,-135,-90,0,0,0.0776421 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-37851,1814:238,148,83,0,0,0.0766111 -37852,1814:239,149,83,0,0,0.0763933 -37853,1815:130,150,83,0,0,0.0762196 -37854,1815:131,151,83,0,0,0.0763933 -37855,1815:132,152,83,0,0,0.0756932 -37856,1815:133,153,83,0,0,0.075442 -37857,1815:134,154,83,0,0,0.0753203 -37858,1815:235,155,83,0,0,0.0753561 -37859,1815:236,156,83,0,0,0.0753631 -37860,1815:237,157,83,0,0,0.0753775 -37861,1815:238,158,83,0,0,0.0753847 -37862,1815:239,159,83,0,0,0.0755781 -37863,1816:130,160,83,0,0,0.0756932 -37864,1816:131,161,83,0,0,0.0756645 -37865,1816:132,162,83,0,0,0.07565 -37866,1816:133,163,83,0,0,0.0757507 -37867,1816:134,164,83,0,0,0.0758874 -37868,1816:235,165,83,0,0,0.0759956 -37869,1816:236,166,83,0,0,0.0760606 -37870,1816:237,167,83,0,0,0.0761618 -37871,1816:238,168,83,0,0,0.0762123 -37872,1816:239,169,83,0,0,0.0762413 -37873,1817:130,170,83,0,0,0.0762848 -37874,1817:131,171,83,0,0,0.0762918 -37875,1817:132,172,83,0,0,0.0762848 -37876,1817:133,173,83,0,0,0.0762848 -37877,1817:134,174,83,0,0,0.0762848 -37878,1817:235,175,83,0,0,0.0762848 -37879,1817:236,176,83,0,0,0.0762918 -37880,1817:237,177,83,0,0,0.0762918 -37881,1817:238,178,83,0,0,0.0762848 -37882,1817:239,179,83,0,0,0.0762918 -37883,1818:130,180,83,0,0,0.0762775 -37884,7918:100,-180,90,0,0,0.0749916 -37885,7917:209,-179,90,0,0,0.0750201 -37886,7917:208,-178,90,0,0,0.0750201 -37887,7917:207,-177,90,0,0,0.0750416 -37888,7917:206,-176,90,0,0,0.0750488 -37889,7917:205,-175,90,0,0,0.0750558 -37890,7917:104,-174,90,0,0,0.0750702 -37891,7917:103,-173,90,0,0,0.0750773 -37892,7917:102,-172,90,0,0,0.0750843 -37893,7917:101,-171,90,0,0,0.0750843 -37894,7917:100,-170,90,0,0,0.0750915 -37895,7916:209,-169,90,0,0,0.0750987 -37896,7916:208,-168,90,0,0,0.0751059 -37897,7916:207,-167,90,0,0,0.0751128 -37898,7916:206,-166,90,0,0,0.0751059 -37899,7916:205,-165,90,0,0,0.0751059 -37900,7916:104,-164,90,0,0,0.0751059 -37901,7916:103,-163,90,0,0,0.0751128 -37902,7916:102,-162,90,0,0,0.0751128 -37903,7916:101,-161,90,0,0,0.07512 -37904,7916:100,-160,90,0,0,0.0751344 -37905,7915:209,-159,90,0,0,0.0751416 -37906,7915:208,-158,90,0,0,0.0751558 -37907,7915:207,-157,90,0,0,0.0751486 -37908,7915:206,-156,90,0,0,0.0751558 -37909,7915:205,-155,90,0,0,0.075163 -37910,7915:104,-154,90,0,0,0.0751486 -37911,7915:103,-153,90,0,0,0.075163 -37912,7915:102,-152,90,0,0,0.0751558 -37913,7915:101,-151,90,0,0,0.0751416 -37914,7915:100,-150,90,0,0,0.0751416 -37915,7914:209,-149,90,0,0,0.0751344 -37916,7914:208,-148,90,0,0,0.0751344 -37917,7914:207,-147,90,0,0,0.0751272 -37918,7914:206,-146,90,0,0,0.07512 -37919,7914:205,-145,90,0,0,0.07512 -37920,7914:104,-144,90,0,0,0.0751128 -37921,7914:103,-143,90,0,0,0.07512 -37922,7914:102,-142,90,0,0,0.0751128 -37923,7914:101,-141,90,0,0,0.0751128 -37924,7914:100,-140,90,0,0,0.07512 -37925,7913:209,-139,90,0,0,0.07512 -37926,7913:208,-138,90,0,0,0.0751272 -37927,7913:207,-137,90,0,0,0.07527 -37928,7913:206,-136,90,0,0,0.0758155 -37929,7913:205,-135,90,0,0,0.0776421 -37930,7913:104,-134,90,0,0,0.0779001 -37931,7911:100,-110,90,0,0,0.0832649 -37932,7910:209,-109,90,0,0,0.0880188 -37933,7910:206,-106,90,0,0,0.0759162 -37934,7910:205,-105,90,0,0,0.0753775 -37935,7910:104,-104,90,0,0,0.0768514 -37936,7910:103,-103,90,0,0,0.0810109 -37937,7906:101,-61,90,0,0,0.0753489 -37938,7906:100,-60,90,0,0,0.075163 -37939,7905:209,-59,90,0,0,0.0750201 -37940,7905:208,-58,90,0,0,0.074949 -37941,7905:207,-57,90,0,0,0.0749346 -37942,7905:206,-56,90,0,0,0.0749275 -37943,7905:205,-55,90,0,0,0.0749346 -37944,7905:104,-54,90,0,0,0.0749346 -37945,7905:103,-53,90,0,0,0.0749418 -37946,7905:102,-52,90,0,0,0.0749562 -37947,7905:101,-51,90,0,0,0.0749631 -37948,7905:100,-50,90,0,0,0.0749631 -37949,7904:209,-49,90,0,0,0.0749631 -37950,7904:208,-48,90,0,0,0.074949 -37951,7904:207,-47,90,0,0,0.0749703 -37952,7904:206,-46,90,0,0,0.0749988 -37953,7904:205,-45,90,0,0,0.0750273 -37954,7904:104,-44,90,0,0,0.0750201 -37955,7904:103,-43,90,0,0,0.0750201 -37956,7904:102,-42,90,0,0,0.0750131 -37957,7904:101,-41,90,0,0,0.0750201 -37958,7904:100,-40,90,0,0,0.0750345 -37959,7903:209,-39,90,0,0,0.0750345 -37960,7903:208,-38,90,0,0,0.0750345 -37961,7903:207,-37,90,0,0,0.0750345 -37962,7903:206,-36,90,0,0,0.0750345 -37963,7903:205,-35,90,0,0,0.0750416 -37964,7903:104,-34,90,0,0,0.0750345 -37965,7903:103,-33,90,0,0,0.0750345 -37966,7903:102,-32,90,0,0,0.0750416 -37967,7903:101,-31,90,0,0,0.0750488 -37968,7903:100,-30,90,0,0,0.0750488 -37969,7902:209,-29,90,0,0,0.0750488 -37970,7902:208,-28,90,0,0,0.0750345 -37971,7902:207,-27,90,0,0,0.0750201 -37972,7902:206,-26,90,0,0,0.0761183 -37973,7902:205,-25,90,0,0,0.0756715 -37974,7902:104,-24,90,0,0,0.0789397 -37975,1916:206,166,90,0,0,0.0752487 -37976,1916:207,167,90,0,0,0.075063 -37977,1916:208,168,90,0,0,0.0749846 -37978,1916:209,169,90,0,0,0.074899 -37979,1917:100,170,90,0,0,0.074892 -37980,1917:101,171,90,0,0,0.0748777 -37981,1917:102,172,90,0,0,0.0807894 -37982,1917:103,173,90,0,0,0.0878209 -37983,1917:104,174,90,0,0,0.087558 -37984,1917:205,175,90,0,0,0.0873776 -37985,1917:206,176,90,0,0,0.0863183 -37986,1917:207,177,90,0,0,0.0752844 -37987,1917:208,178,90,0,0,0.0748849 -37988,1917:209,179,90,0,0,0.074949 -37989,1918:100,180,90,0,0,0.0749916 - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/ZFZ2WWxZTlE4Q3R1OUtmNGlWNFVMUFhoZVlDNStTVDJHbWJQNStIS0N6Yz0 - The warnings from the underlying MaxEnt model - text/csv - - - http://data-d.d4science.org/OXhhdUF6MTN4VUZ1OUtmNGlWNFVMTSs1R2F4NVRsMlZHbWJQNStIS0N6Yz0 - ASCII Maps of the environmental layers for checking features aligments - text/csv - - - http://data-d.d4science.org/RlVOTU12QWxXSFZ1OUtmNGlWNFVMTWg4OGhtc09TZkFHbWJQNStIS0N6Yz0 - World Thumbnail - image/png - - - http://data-d.d4science.org/ZFgvV1M2SEQySjF1OUtmNGlWNFVMTW0vTzArMDhlb3dHbWJQNStIS0N6Yz0 - ROC Curve - image/png - - - http://data-d.d4science.org/MXI0K1cvaklVa051OUtmNGlWNFVMRlUvN3FaWWl3Y0NHbWJQNStIS0N6Yz0 - Omission-Commission Curve - image/png - - - http://data-d.d4science.org/cks0OTc1eXFrQjl1OUtmNGlWNFVMRGI3ZS9WTklRMEhHbWJQNStIS0N6Yz0 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - text/csv - - - - - - - - -2016-05-06 11:41:23 DEBUG SClient4WPS:970 - Process Executed -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: #text -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: #text -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: ogr:FeatureCollection -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: gml:featureMember -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/ZFZ2WWxZTlE4Q3R1OUtmNGlWNFVMUFhoZVlDNStTVDJHbWJQNStIS0N6Yz0 -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:The warnings from the underlying MaxEnt model -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/OXhhdUF6MTN4VUZ1OUtmNGlWNFVMTSs1R2F4NVRsMlZHbWJQNStIS0N6Yz0 -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:ASCII Maps of the environmental layers for checking features aligments -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/RlVOTU12QWxXSFZ1OUtmNGlWNFVMTWg4OGhtc09TZkFHbWJQNStIS0N6Yz0 -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:World Thumbnail -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/ZFgvV1M2SEQySjF1OUtmNGlWNFVMTW0vTzArMDhlb3dHbWJQNStIS0N6Yz0 -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:ROC Curve -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/MXI0K1cvaklVa051OUtmNGlWNFVMRlUvN3FaWWl3Y0NHbWJQNStIS0N6Yz0 -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Omission-Commission Curve -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-06 11:41:23 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/cks0OTc1eXFrQjl1OUtmNGlWNFVMRGI3ZS9WTklRMEhHbWJQNStIS0N6Yz0 -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-06 11:41:23 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-06 11:41:23 DEBUG SClient4WPS:516 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/ZFZ2WWxZTlE4Q3R1OUtmNGlWNFVMUFhoZVlDNStTVDJHbWJQNStIS0N6Yz0, description=The warnings from the underlying MaxEnt model, mimeType=text/csv] -2016-05-06 11:41:23 DEBUG SClient4WPS:516 - ResponseWPS Map: F1-->ResponseWPS [data=http://data-d.d4science.org/OXhhdUF6MTN4VUZ1OUtmNGlWNFVMTSs1R2F4NVRsMlZHbWJQNStIS0N6Yz0, description=ASCII Maps of the environmental layers for checking features aligments, mimeType=text/csv] -2016-05-06 11:41:23 DEBUG SClient4WPS:516 - ResponseWPS Map: F2-->ResponseWPS [data=http://data-d.d4science.org/RlVOTU12QWxXSFZ1OUtmNGlWNFVMTWg4OGhtc09TZkFHbWJQNStIS0N6Yz0, description=World Thumbnail, mimeType=image/png] -2016-05-06 11:41:23 DEBUG SClient4WPS:516 - ResponseWPS Map: F3-->ResponseWPS [data=http://data-d.d4science.org/ZFgvV1M2SEQySjF1OUtmNGlWNFVMTW0vTzArMDhlb3dHbWJQNStIS0N6Yz0, description=ROC Curve, mimeType=image/png] -2016-05-06 11:41:23 DEBUG SClient4WPS:516 - ResponseWPS Map: F4-->ResponseWPS [data=http://data-d.d4science.org/MXI0K1cvaklVa051OUtmNGlWNFVMRlUvN3FaWWl3Y0NHbWJQNStIS0N6Yz0, description=Omission-Commission Curve, mimeType=image/png] -2016-05-06 11:41:23 DEBUG SClient4WPS:516 - ResponseWPS Map: F5-->ResponseWPS [data=http://data-d.d4science.org/cks0OTc1eXFrQjl1OUtmNGlWNFVMRGI3ZS9WTklRMEhHbWJQNStIS0N6Yz0, description=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], mimeType=text/csv] -2016-05-06 11:41:23 DEBUG SClient4WPS:1018 - Adding OBJ:F0 -2016-05-06 11:41:23 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/ZFZ2WWxZTlE4Q3R1OUtmNGlWNFVMUFhoZVlDNStTVDJHbWJQNStIS0N6Yz0, name=F0, description=The warnings from the underlying MaxEnt model, typology=OBJECT] -2016-05-06 11:41:23 DEBUG SClient4WPS:1018 - Adding OBJ:F1 -2016-05-06 11:41:23 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/OXhhdUF6MTN4VUZ1OUtmNGlWNFVMTSs1R2F4NVRsMlZHbWJQNStIS0N6Yz0, name=F1, description=ASCII Maps of the environmental layers for checking features aligments, typology=OBJECT] -2016-05-06 11:41:23 DEBUG SClient4WPS:1018 - Adding OBJ:F2 -2016-05-06 11:41:23 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/RlVOTU12QWxXSFZ1OUtmNGlWNFVMTWg4OGhtc09TZkFHbWJQNStIS0N6Yz0, name=F2, description=World Thumbnail, typology=OBJECT] -2016-05-06 11:41:23 DEBUG SClient4WPS:1018 - Adding OBJ:F3 -2016-05-06 11:41:23 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/ZFgvV1M2SEQySjF1OUtmNGlWNFVMTW0vTzArMDhlb3dHbWJQNStIS0N6Yz0, name=F3, description=ROC Curve, typology=OBJECT] -2016-05-06 11:41:23 DEBUG SClient4WPS:1018 - Adding OBJ:F4 -2016-05-06 11:41:23 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/MXI0K1cvaklVa051OUtmNGlWNFVMRlUvN3FaWWl3Y0NHbWJQNStIS0N6Yz0, name=F4, description=Omission-Commission Curve, typology=OBJECT] -2016-05-06 11:41:23 DEBUG SClient4WPS:1018 - Adding OBJ:F5 -2016-05-06 11:41:23 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/cks0OTc1eXFrQjl1OUtmNGlWNFVMRGI3ZS9WTklRMEhHbWJQNStIS0N6Yz0, name=F5, description=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], typology=OBJECT] -2016-05-06 11:41:23 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/ZFZ2WWxZTlE4Q3R1OUtmNGlWNFVMUFhoZVlDNStTVDJHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=The warnings from the underlying MaxEnt model, getDescription()=The warnings from the underlying MaxEnt model, getResourceType()=FILE], F1=FileResource [url=http://data-d.d4science.org/OXhhdUF6MTN4VUZ1OUtmNGlWNFVMTSs1R2F4NVRsMlZHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F1, getName()=ASCII Maps of the environmental layers for checking features aligments, getDescription()=ASCII Maps of the environmental layers for checking features aligments, getResourceType()=FILE], F2=ImagesResource [link=http://data-d.d4science.org/RlVOTU12QWxXSFZ1OUtmNGlWNFVMTWg4OGhtc09TZkFHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F2, getName()=World Thumbnail, getDescription()=World Thumbnail, getResourceType()=IMAGES], F3=ImagesResource [link=http://data-d.d4science.org/ZFgvV1M2SEQySjF1OUtmNGlWNFVMTW0vTzArMDhlb3dHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F3, getName()=ROC Curve, getDescription()=ROC Curve, getResourceType()=IMAGES], F4=ImagesResource [link=http://data-d.d4science.org/MXI0K1cvaklVa051OUtmNGlWNFVMRlUvN3FaWWl3Y0NHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F4, getName()=Omission-Commission Curve, getDescription()=Omission-Commission Curve, getResourceType()=IMAGES], F5=FileResource [url=http://data-d.d4science.org/cks0OTc1eXFrQjl1OUtmNGlWNFVMRGI3ZS9WTklRMEhHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F5, getName()=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], getDescription()=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-06 11:41:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:41:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:41:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:41:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:41:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:41:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:41:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:41:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:41:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:41:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:41:41 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:41:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:41:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:41:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:41:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:41:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:41:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:41:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:41:41 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 11:41:41 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 11:41:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:41:41 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 11:41:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:41:41 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 11:41:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:41:41 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:41:41 DEBUG WorkspaceExplorerServiceImpl:416 - item and parent limit are identical element, returning -2016-05-06 11:41:41 INFO WorkspaceExplorerServiceImpl:178 - end time - 107 msc 0 sec -2016-05-06 11:41:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:41:46 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:41:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:41:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:41:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:41:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:41:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:41:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:41:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:41:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:41:46 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:41:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:41:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:41:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:41:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:41:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:41:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:41:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:41:48 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 11:41:48 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 11:41:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:41:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:41:49 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 11:41:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:41:49 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 11:41:49 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:41:49 DEBUG WorkspaceExplorerServiceImpl:416 - item and parent limit are identical element, returning -2016-05-06 11:41:49 INFO WorkspaceExplorerServiceImpl:178 - end time - 432 msc 0 sec -2016-05-06 11:41:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:41:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:42:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:42:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:43:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:43:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:44:44 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:44:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:44:44 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:44:44 WARN SessionCheckerServiceImpl:80 - Scope is null at Fri May 06 11:44:44 CEST 2016 -2016-05-06 11:44:44 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:45:59 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 11:45:59 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 11:45:59 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 11:45:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:45:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:45:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:45:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi null -2016-05-06 11:45:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:45:59 DEBUG ASLSession:311 - Scope is null, returning null -2016-05-06 11:45:59 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=null, scopeName=null, userEmailAddress=null, userFullName=null] -2016-05-06 11:46:01 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:46:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:46:01 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:46:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi null -2016-05-06 11:46:01 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:46:02 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:46:02 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-06 11:46:04 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:46:04 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-06 11:46:04 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:46:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi null -2016-05-06 11:46:04 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-06 11:46:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:46:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:46:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:46:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:46:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:46:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:46:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:46:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:46:04 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:46:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-06 11:46:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:46:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:46:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:46:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:46:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:46:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:46:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:46:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:46:04 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:46:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-06 11:46:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:46:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:46:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:46:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:46:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:46:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:46:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:46:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:46:05 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:46:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-06 11:46:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:46:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:46:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:46:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:46:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:46:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:46:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:46:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:46:06 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:46:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-06 11:46:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:46:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:48:04 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-06 11:48:04 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-06 11:48:04 INFO DataMinerManagerServiceImpl:53 - DataMinerManager started! -2016-05-06 11:48:04 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 11:48:04 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:48:04 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 11:48:04 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@277142ae -2016-05-06 11:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:48:04 INFO ASLSession:352 - Logging the entrance -2016-05-06 11:48:04 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 11:48:04 DEBUG TemplateModel:83 - 2016-05-06 11:48:04, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 11:48:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:48:04 DEBUG DataMinerManagerServiceImpl:72 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-06 11:48:07 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 11:48:07 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 11:48:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:48:07 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 11:48:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:48:07 INFO ASLSession:352 - Logging the entrance -2016-05-06 11:48:07 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 11:48:07 DEBUG TemplateModel:83 - 2016-05-06 11:48:07, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 11:48:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:48:07 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 11:48:07 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 141 ms -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-06 11:48:07 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-06 11:48:07 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-06 11:48:08 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:48:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 11:48:08 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@a5d1a55 -2016-05-06 11:48:08 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@7b3192e7 -2016-05-06 11:48:08 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4456bdb6 -2016-05-06 11:48:08 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@78eab37d -2016-05-06 11:48:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 121 ms -2016-05-06 11:48:08 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-06 11:48:08 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-06 11:48:08 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 11:48:08 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-06 11:48:08 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-06 11:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:48:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:48:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-06 11:48:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-06 11:48:08 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-06 11:48:08 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:48:08 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-06 11:48:08 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 11:48:08 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 11:48:08 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 11:48:08 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 11:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:48:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:48:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 11:48:08 DEBUG DataMinerManagerServiceImpl:260 - getDataMinerWorkArea() -2016-05-06 11:48:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:48:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:48:08 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-06 11:48:08 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-06 11:48:08 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-06 11:48:08 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-06 11:48:08 DEBUG JCRRepository:271 - Initialize repository -2016-05-06 11:48:08 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-06 11:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-06 11:48:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:48:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-06 11:48:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 24 ms -2016-05-06 11:48:08 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-06 11:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:48:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:48:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:48:08 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-06 11:48:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:48:08 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-06 11:48:09 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 11:48:09 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 11:48:09 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-06 11:48:09 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 11:48:09 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 11:48:09 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-06 11:48:09 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-06 11:48:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:48:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:48:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:48:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:48:09 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 11:48:09 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 11:48:09 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-06 11:48:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-06 11:48:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:48:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:48:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:48:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:48:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:48:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:48:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:48:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:48:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:48:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-06 11:48:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:48:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:48:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:48:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:48:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:48:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:48:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:48:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:48:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:48:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-06 11:48:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:48:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:48:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:48:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:48:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:48:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:48:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:48:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:48:09 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:48:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-06 11:48:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:48:11 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 11:48:11 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 11:48:11 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:48:11 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-06 11:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:48:11 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-06 11:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 11:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 11:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:48:11 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 11:48:11 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-06 11:48:11 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-06 11:48:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 11:48:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:48:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:48:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:48:11 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 11:48:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 11:48:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:48:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 11:48:11 INFO WorkspaceExplorerServiceImpl:178 - end time - 140 msc 0 sec -2016-05-06 11:48:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 25 ms -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:48:11 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 11:48:11 INFO ISClientConnector:82 - found only one RR, take it -2016-05-06 11:48:11 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-06 11:48:11 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-06 11:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 11:48:11 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 11:48:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:48:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:48:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:48:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:48:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-06 11:48:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 11:48:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:48:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 11:48:12 INFO WorkspaceExplorerServiceImpl:178 - end time - 420 msc 0 sec -2016-05-06 11:48:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 21 ms -2016-05-06 11:48:12 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 11:48:12 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-06 11:48:12 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-06 11:48:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 11:48:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 11:48:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-06 11:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:48:12 INFO WorkspaceExplorerServiceImpl:178 - end time - 443 msc 0 sec -2016-05-06 11:48:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:48:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:49:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 11:49:03 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-06 11:49:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 11:49:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:49:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:49:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:49:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:49:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:49:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:49:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:49:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:49:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:49:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 11:49:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 11:49:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 11:49:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 11:49:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 11:49:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 11:49:03 INFO JCRServlets:267 - Servlet getItemById 2c0348d8-6786-4573-8b26-b0ff5c073311 -2016-05-06 11:49:03 INFO JCRServlets:267 - Servlet getItemById 2c0348d8-6786-4573-8b26-b0ff5c073311 -2016-05-06 11:49:03 INFO JCRServlets:142 - Calling servlet getChildrenById 2c0348d8-6786-4573-8b26-b0ff5c073311 by giancarlo.panichi -2016-05-06 11:49:03 INFO JCRServlets:697 - Calling Servlet get Parents By Id 2c0348d8-6786-4573-8b26-b0ff5c073311 by giancarlo.panichi -2016-05-06 11:49:03 INFO WorkspaceExplorerServiceImpl:178 - end time - 69 msc 0 sec -2016-05-06 11:49:03 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 11:49:03 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=2c0348d8-6786-4573-8b26-b0ff5c073311, name=MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:49:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 11:49:03 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 11:49:03 INFO WorkspaceExplorerServiceImpl:431 - reached parent limit f7245109-f1c3-4c5a-828d-3381919a5f5a, break -2016-05-06 11:49:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:49:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:50:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 11:50:49 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-06 11:51:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 11:51:44 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-06 11:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:52:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:53:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:53:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:54:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:54:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:55:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 11:55:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 11:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:56:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 11:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 11:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 11:58:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:58:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:59:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 11:59:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 11:59:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 11:59:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 12:00:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 12:00:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 12:01:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:01:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 12:02:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:02:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 12:03:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:03:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 12:04:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 12:04:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 12:05:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 12:05:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 12:06:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 12:06:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 12:07:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 12:07:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 12:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 12:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 12:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 12:09:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 12:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 12:09:42 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 12:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 12:09:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 12:09:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 12:09:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 12:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 12:09:42 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-06 12:09:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 12:09:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 12:09:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 12:09:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 12:09:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 12:09:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 12:09:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 12:09:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 12:09:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 12:09:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 12:09:42 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 12:09:42 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 12:09:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 12:09:42 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 12:09:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 12:09:42 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 12:09:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 12:09:42 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 12:09:42 DEBUG WorkspaceExplorerServiceImpl:416 - item and parent limit are identical element, returning -2016-05-06 12:09:42 INFO WorkspaceExplorerServiceImpl:178 - end time - 107 msc 0 sec -2016-05-06 12:09:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 12:09:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 12:09:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 12:09:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 12:09:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 12:09:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 12:09:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 12:09:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 12:09:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 12:09:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:09:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 12:09:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:09:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 12:09:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 12:09:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 12:09:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 12:09:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 12:09:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 12:09:52 INFO JCRServlets:267 - Servlet getItemById 2c0348d8-6786-4573-8b26-b0ff5c073311 -2016-05-06 12:09:52 INFO JCRServlets:267 - Servlet getItemById 2c0348d8-6786-4573-8b26-b0ff5c073311 -2016-05-06 12:09:52 INFO JCRServlets:697 - Calling Servlet get Parents By Id 2c0348d8-6786-4573-8b26-b0ff5c073311 by giancarlo.panichi -2016-05-06 12:09:52 INFO JCRServlets:142 - Calling servlet getChildrenById 2c0348d8-6786-4573-8b26-b0ff5c073311 by giancarlo.panichi -2016-05-06 12:09:52 INFO WorkspaceExplorerServiceImpl:178 - end time - 55 msc 0 sec -2016-05-06 12:09:52 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 12:09:52 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=2c0348d8-6786-4573-8b26-b0ff5c073311, name=MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 12:09:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 12:09:52 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 12:09:52 INFO WorkspaceExplorerServiceImpl:431 - reached parent limit f7245109-f1c3-4c5a-828d-3381919a5f5a, break -2016-05-06 12:10:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:10:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 12:10:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 12:10:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 12:11:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 12:11:54 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-06 12:12:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:12:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 12:12:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:12:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 12:12:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 12:12:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 12:12:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 12:12:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 12:12:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 12:12:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 12:12:14 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-06 12:12:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-06 12:12:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 12:12:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 12:12:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 12:12:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 12:12:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 12:12:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 12:12:14 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 12:12:14 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 12:12:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 12:12:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 12:12:14 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 12:12:14 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 12:12:14 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 12:12:14 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 12:12:14 DEBUG WorkspaceExplorerServiceImpl:416 - item and parent limit are identical element, returning -2016-05-06 12:12:14 INFO WorkspaceExplorerServiceImpl:178 - end time - 94 msc 0 sec -2016-05-06 12:12:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 12:12:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 12:12:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 12:12:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 12:12:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 12:12:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 12:12:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 12:12:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 12:12:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 12:12:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:12:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 12:12:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:12:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 12:12:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 12:12:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 12:12:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 12:12:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 12:12:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 12:12:18 INFO JCRServlets:267 - Servlet getItemById 2c0348d8-6786-4573-8b26-b0ff5c073311 -2016-05-06 12:12:18 INFO JCRServlets:267 - Servlet getItemById 2c0348d8-6786-4573-8b26-b0ff5c073311 -2016-05-06 12:12:18 INFO JCRServlets:142 - Calling servlet getChildrenById 2c0348d8-6786-4573-8b26-b0ff5c073311 by giancarlo.panichi -2016-05-06 12:12:18 INFO JCRServlets:697 - Calling Servlet get Parents By Id 2c0348d8-6786-4573-8b26-b0ff5c073311 by giancarlo.panichi -2016-05-06 12:12:18 INFO WorkspaceExplorerServiceImpl:178 - end time - 53 msc 0 sec -2016-05-06 12:12:18 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 12:12:18 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=2c0348d8-6786-4573-8b26-b0ff5c073311, name=MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 12:12:18 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 12:12:18 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 12:12:18 INFO WorkspaceExplorerServiceImpl:431 - reached parent limit f7245109-f1c3-4c5a-828d-3381919a5f5a, break -2016-05-06 12:12:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 12:12:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 12:13:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 12:13:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 12:14:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 12:14:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 12:15:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 12:15:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 12:16:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 12:16:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 12:17:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 12:17:24 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 12:18:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 12:18:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 12:18:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 12:18:19 WARN SessionCheckerServiceImpl:80 - Scope is null at Fri May 06 12:18:19 CEST 2016 -2016-05-06 12:18:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 12:23:04 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 12:23:04 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 12:23:04 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 17:02:43 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-06 17:02:43 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-06 17:02:43 INFO DataMinerManagerServiceImpl:54 - DataMinerManager started! -2016-05-06 17:02:43 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 17:02:43 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 17:02:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:02:43 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 17:02:43 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@7593d812 -2016-05-06 17:02:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:02:43 INFO ASLSession:352 - Logging the entrance -2016-05-06 17:02:43 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 17:02:43 DEBUG TemplateModel:83 - 2016-05-06 17:02:43, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 17:02:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:02:43 DEBUG DataMinerManagerServiceImpl:73 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-06 17:02:45 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 17:02:45 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 17:02:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:02:45 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 17:02:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:02:45 INFO ASLSession:352 - Logging the entrance -2016-05-06 17:02:45 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 17:02:45 DEBUG TemplateModel:83 - 2016-05-06 17:02:45, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 17:02:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:02:45 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 17:02:45 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 127 ms -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-06 17:02:45 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-06 17:02:45 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-06 17:02:45 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:02:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 17:02:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@f01f947 -2016-05-06 17:02:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@59dedcde -2016-05-06 17:02:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@7b440ad -2016-05-06 17:02:45 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@a5f6840 -2016-05-06 17:02:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 120 ms -2016-05-06 17:02:45 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-06 17:02:45 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-06 17:02:45 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:02:45 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-06 17:02:45 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-06 17:02:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:02:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:02:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-06 17:02:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 17 ms -2016-05-06 17:02:46 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-06 17:02:46 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:02:46 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-06 17:02:46 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 17:02:46 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 17:02:46 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 17:02:46 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 17:02:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:02:46 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:02:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:02:46 DEBUG DataMinerManagerServiceImpl:264 - getDataMinerWorkArea() -2016-05-06 17:02:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:46 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-06 17:02:46 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-06 17:02:46 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-06 17:02:46 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-06 17:02:46 DEBUG JCRRepository:271 - Initialize repository -2016-05-06 17:02:46 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-06 17:02:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-06 17:02:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:02:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-06 17:02:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 136 ms -2016-05-06 17:02:46 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-06 17:02:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:02:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:46 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-06 17:02:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:46 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-06 17:02:47 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 17:02:47 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 17:02:47 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-06 17:02:47 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 17:02:47 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 17:02:47 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-06 17:02:47 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-06 17:02:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:47 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 17:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-06 17:02:47 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:47 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-06 17:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:47 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-06 17:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:47 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-06 17:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:47 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-06 17:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:48 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 17:02:48 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 17:02:48 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:02:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:02:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:48 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-06 17:02:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:02:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:02:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:48 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-06 17:02:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:48 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-06 17:02:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:02:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:02:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:48 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:02:48 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:02:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:02:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:02:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:02:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:02:48 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 17:02:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 17:02:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-06 17:02:48 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 17:02:48 INFO ISClientConnector:82 - found only one RR, take it -2016-05-06 17:02:48 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-06 17:02:48 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:02:48 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:02:48 INFO WorkspaceExplorerServiceImpl:178 - end time - 112 msc 0 sec -2016-05-06 17:02:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:02:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:02:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:02:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:02:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:02:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:02:48 INFO WorkspaceExplorerServiceImpl:178 - end time - 374 msc 0 sec -2016-05-06 17:02:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:02:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 17:02:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-06 17:02:48 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 17:02:48 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:02:48 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:02:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:02:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:02:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:02:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:02:48 INFO WorkspaceExplorerServiceImpl:178 - end time - 387 msc 0 sec -2016-05-06 17:02:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:02:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:02:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:02:53 DEBUG DataMinerManagerServiceImpl:225 - DeleteItem(): ItemDescription [id=c5429391-5174-4e70-9be8-5d73c4a45123, name=DBSCAN_ID_b548e220-6a15-4914-8e7b-a7861fc280e1, owner=giancarlo.panichi, path=/Workspace/DataMiner/Computations/DBSCAN_ID_b548e220-6a15-4914-8e7b-a7861fc280e1, type=FOLDER, publicLink=null] -2016-05-06 17:02:53 DEBUG StorageUtil:280 - User: giancarlo.panichi, ItemId:c5429391-5174-4e70-9be8-5d73c4a45123 -2016-05-06 17:02:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/Trash by giancarlo.panichi -2016-05-06 17:02:53 INFO JCRServlets:267 - Servlet getItemById c5429391-5174-4e70-9be8-5d73c4a45123 -2016-05-06 17:02:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:53 DEBUG ServiceEngine:802 - put() - start -2016-05-06 17:02:53 INFO ServiceEngine:19 - file gCube parameter before: null null -2016-05-06 17:02:53 DEBUG BucketCoding:32 - Coding name: path: /Workspace/Trash/c5429391-5174-4e70-9be8-5d73c4a45123 rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:02:53 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:02:53 DEBUG ServiceEngine:62 - path(String) - name: c5429391-5174-4e70-9be8-5d73c4a45123 -2016-05-06 17:02:53 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/ -2016-05-06 17:02:53 INFO ServiceEngine:27 - file gCube parameter after: null null -2016-05-06 17:02:53 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:02:53 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 17:02:53 INFO OperationFactory:39 - getOperation(String) - start move_dir -2016-05-06 17:02:53 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:02:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/DataMiner/Computations/DBSCAN_ID_b548e220-6a15-4914-8e7b-a7861fc280e1 rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:02:53 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:02:53 DEBUG BucketCoding:32 - Coding name: path: /Workspace/Trash/c5429391-5174-4e70-9be8-5d73c4a45123 rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:02:53 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:02:53 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:02:53 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:02:53 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:02:53 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:02:53 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:02:53 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:02:53 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:02:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a5a311cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5cd69c1, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@70da00e0, socketFactory=javax.net.DefaultSocketFactory@786fac01, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:02:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:02:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:02:54 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1956712}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1552999, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:02:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:02:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:02:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:02:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:02:54 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:332991}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1341498, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:02:54 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2206380}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1102476, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:02:54 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1956713}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG command:56 - Command execution completed -2016-05-06 17:02:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG command:56 - Command execution completed -2016-05-06 17:02:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG command:56 - Command execution completed -2016-05-06 17:02:54 DEBUG DefaultMongoClient:1234 - parent folder extracted: DBSCAN_ID_b548e220-6a15-4914-8e7b-a7861fc280e1 -2016-05-06 17:02:54 DEBUG DefaultMongoClient:1187 - moveDir operation on Mongo backend, parameters: source path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/DataMiner/Computations/DBSCAN_ID_b548e220-6a15-4914-8e7b-a7861fc280e1/ destination path: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/c5429391-5174-4e70-9be8-5d73c4a45123/ -2016-05-06 17:02:54 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1620329}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1201720, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 17:02:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:54 DEBUG query:56 - Query completed -2016-05-06 17:02:54 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:02:54 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG update:56 - Update completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG update:56 - Update completed -2016-05-06 17:02:55 DEBUG MongoIO:438 - Create new object with name: c5429391-5174-4e70-9be8-5d73c4a45123 dir: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/ type= dir -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG update:56 - Update completed -2016-05-06 17:02:55 DEBUG MongoIO:438 - Create new object with name: DBSCAN_ID_b548e220-6a15-4914-8e7b-a7861fc280e1 dir: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/c5429391-5174-4e70-9be8-5d73c4a45123/ type= dir -2016-05-06 17:02:55 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:02:55 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG update:56 - Update completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG update:56 - Update completed -2016-05-06 17:02:55 DEBUG MongoIO:438 - Create new object with name: Input Data Sets dir: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/c5429391-5174-4e70-9be8-5d73c4a45123/DBSCAN_ID_b548e220-6a15-4914-8e7b-a7861fc280e1/ type= dir -2016-05-06 17:02:55 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:02:55 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG update:56 - Update completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG query:56 - Query completed -2016-05-06 17:02:55 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956713}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:02:55 DEBUG update:56 - Update completed -2016-05-06 17:02:55 DEBUG MongoIO:438 - Create new object with name: Output Data Sets dir: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/c5429391-5174-4e70-9be8-5d73c4a45123/DBSCAN_ID_b548e220-6a15-4914-8e7b-a7861fc280e1/ type= dir -2016-05-06 17:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2206380} -2016-05-06 17:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:332991} -2016-05-06 17:02:55 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1956713}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1620329} -2016-05-06 17:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1956713} -2016-05-06 17:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1956712} -2016-05-06 17:02:55 INFO MongoIO:508 - Mongo has been closed -2016-05-06 17:02:55 INFO JCRServlets:197 - Calling Servlet MoveToTrashIds on 1 by giancarlo.panichi -2016-05-06 17:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:02:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:02:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:02:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:02:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:02:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:02:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:02:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:02:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:02:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:02:55 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 17:02:55 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 17:02:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:02:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:02:55 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 17:02:55 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 17:02:55 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:02:55 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 17:02:55 DEBUG WorkspaceExplorerServiceImpl:416 - item and parent limit are identical element, returning -2016-05-06 17:02:55 INFO WorkspaceExplorerServiceImpl:178 - end time - 96 msc 0 sec -2016-05-06 17:03:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:03:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:03:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:03:34 DEBUG DataMinerManagerServiceImpl:225 - DeleteItem(): ItemDescription [id=2c0348d8-6786-4573-8b26-b0ff5c073311, name=MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d, owner=giancarlo.panichi, path=/Workspace/DataMiner/Computations/MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d, type=FOLDER, publicLink=null] -2016-05-06 17:03:34 DEBUG StorageUtil:280 - User: giancarlo.panichi, ItemId:2c0348d8-6786-4573-8b26-b0ff5c073311 -2016-05-06 17:03:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:03:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:03:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:03:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:03:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:03:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:03:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/Trash by giancarlo.panichi -2016-05-06 17:03:34 INFO JCRServlets:267 - Servlet getItemById 2c0348d8-6786-4573-8b26-b0ff5c073311 -2016-05-06 17:03:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:03:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:03:34 DEBUG ServiceEngine:802 - put() - start -2016-05-06 17:03:34 INFO ServiceEngine:19 - file gCube parameter before: null null -2016-05-06 17:03:34 DEBUG BucketCoding:32 - Coding name: path: /Workspace/Trash/2c0348d8-6786-4573-8b26-b0ff5c073311 rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:03:34 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:03:34 DEBUG ServiceEngine:62 - path(String) - name: 2c0348d8-6786-4573-8b26-b0ff5c073311 -2016-05-06 17:03:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/ -2016-05-06 17:03:34 INFO ServiceEngine:27 - file gCube parameter after: null null -2016-05-06 17:03:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:03:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 17:03:34 INFO OperationFactory:39 - getOperation(String) - start move_dir -2016-05-06 17:03:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:03:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/DataMiner/Computations/MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:03:34 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:03:34 DEBUG BucketCoding:32 - Coding name: path: /Workspace/Trash/2c0348d8-6786-4573-8b26-b0ff5c073311 rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:03:34 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:03:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:03:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:03:34 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:03:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:03:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:03:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:03:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:03:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a5a311cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@5cd69c1, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@70da00e0, socketFactory=javax.net.DefaultSocketFactory@786fac01, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:03:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:03:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:03:34 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:333008}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:03:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:03:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1391623, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:03:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:03:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:03:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:03:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:03:34 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1620344}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:03:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:03:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1780481, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:03:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-06 17:03:34 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2206395}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:03:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:03:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1440451, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:03:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-06 17:03:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-06 17:03:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-06 17:03:35 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1956737}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1441186, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:03:35 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-06 17:03:35 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1956738}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG command:56 - Command execution completed -2016-05-06 17:03:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG command:56 - Command execution completed -2016-05-06 17:03:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-06 17:03:35 DEBUG command:56 - Command execution completed -2016-05-06 17:03:35 DEBUG DefaultMongoClient:1234 - parent folder extracted: MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d -2016-05-06 17:03:35 DEBUG DefaultMongoClient:1187 - moveDir operation on Mongo backend, parameters: source path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/DataMiner/Computations/MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d/ destination path: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/2c0348d8-6786-4573-8b26-b0ff5c073311/ -2016-05-06 17:03:35 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-06 17:03:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:03:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG MongoIO:438 - Create new object with name: 2c0348d8-6786-4573-8b26-b0ff5c073311 dir: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/ type= dir -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG MongoIO:438 - Create new object with name: MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d dir: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/2c0348d8-6786-4573-8b26-b0ff5c073311/ type= dir -2016-05-06 17:03:36 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG MongoIO:438 - Create new object with name: Input Data Sets dir: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/2c0348d8-6786-4573-8b26-b0ff5c073311/MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d/ type= dir -2016-05-06 17:03:36 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG MongoIO:438 - Create new object with name: Output Data Sets dir: /gcube/home/org.gcube.portlets.user/test-home-library/Workspace/Trash/2c0348d8-6786-4573-8b26-b0ff5c073311/MAX_ENT_NICHE_MODELLING_ID_6071f298-fe8e-4530-8325-04792901214d/ type= dir -2016-05-06 17:03:36 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 INFO DefaultMongoClient:1491 - set last operation: MOVE_DIR -2016-05-06 17:03:36 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG update:56 - Update completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956738}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:03:36 DEBUG query:56 - Query completed -2016-05-06 17:03:36 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2206395} -2016-05-06 17:03:36 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:333008} -2016-05-06 17:03:36 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1956738}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:03:36 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1620344} -2016-05-06 17:03:36 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1956738} -2016-05-06 17:03:36 INFO MongoIO:508 - Mongo has been closed -2016-05-06 17:03:36 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1956737} -2016-05-06 17:03:36 INFO JCRServlets:197 - Calling Servlet MoveToTrashIds on 1 by giancarlo.panichi -2016-05-06 17:03:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:03:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:03:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:03:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:03:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:03:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:03:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:03:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:03:36 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-06 17:03:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:03:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:03:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:03:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:03:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:03:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:03:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:03:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:03:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:03:36 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 17:03:36 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 17:03:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:03:36 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 17:03:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:03:36 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 17:03:36 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:03:36 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 17:03:36 DEBUG WorkspaceExplorerServiceImpl:416 - item and parent limit are identical element, returning -2016-05-06 17:03:36 INFO WorkspaceExplorerServiceImpl:178 - end time - 84 msc 0 sec -2016-05-06 17:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:03:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:04:20 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-06 17:04:20 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-06 17:04:20 INFO DataMinerManagerServiceImpl:54 - DataMinerManager started! -2016-05-06 17:04:20 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 17:04:20 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 17:04:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:04:20 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 17:04:20 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@768a8828 -2016-05-06 17:04:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:04:20 INFO ASLSession:352 - Logging the entrance -2016-05-06 17:04:20 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 17:04:20 DEBUG TemplateModel:83 - 2016-05-06 17:04:20, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 17:04:20 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:04:20 DEBUG DataMinerManagerServiceImpl:73 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-06 17:04:21 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 17:04:21 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 17:04:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-06 17:04:21 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 17:04:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:04:21 INFO ASLSession:352 - Logging the entrance -2016-05-06 17:04:21 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 17:04:21 DEBUG TemplateModel:83 - 2016-05-06 17:04:21, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 17:04:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:04:22 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 17:04:22 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 136 ms -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-06 17:04:22 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-06 17:04:22 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-06 17:04:22 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:04:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 17:04:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2981b170 -2016-05-06 17:04:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6553e136 -2016-05-06 17:04:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@90d677f -2016-05-06 17:04:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@42359b90 -2016-05-06 17:04:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 122 ms -2016-05-06 17:04:22 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-06 17:04:22 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-06 17:04:22 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:04:22 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-06 17:04:22 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-06 17:04:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:04:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:04:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-06 17:04:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-06 17:04:22 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-06 17:04:22 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:04:22 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-06 17:04:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 17:04:22 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 17:04:22 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 17:04:22 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 17:04:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:04:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:04:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:04:22 DEBUG DataMinerManagerServiceImpl:264 - getDataMinerWorkArea() -2016-05-06 17:04:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:23 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-06 17:04:23 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-06 17:04:23 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-06 17:04:23 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-06 17:04:23 DEBUG JCRRepository:271 - Initialize repository -2016-05-06 17:04:23 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-06 17:04:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-06 17:04:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:04:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-06 17:04:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 153 ms -2016-05-06 17:04:23 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-06 17:04:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:04:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:23 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-06 17:04:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:23 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-06 17:04:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:04:23 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-06 17:04:23 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 17:04:23 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 17:04:23 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-06 17:04:23 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 17:04:23 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 17:04:23 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-06 17:04:23 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-06 17:04:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:04:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:04:24 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 17:04:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-06 17:04:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:04:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:04:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:04:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-06 17:04:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:04:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:04:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:04:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-06 17:04:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:04:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:04:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:24 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:04:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-06 17:04:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:04:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:04:25 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 17:04:25 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 17:04:25 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:04:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:04:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:25 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-06 17:04:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:04:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:04:25 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:04:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:25 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-06 17:04:25 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-06 17:04:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:04:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:04:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:04:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:25 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 17:04:25 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:04:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:04:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:04:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:04:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:04:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 29 ms -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:04:25 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 17:04:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:04:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:04:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-06 17:04:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:04:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:04:25 INFO WorkspaceExplorerServiceImpl:178 - end time - 93 msc 0 sec -2016-05-06 17:04:25 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 17:04:25 INFO ISClientConnector:82 - found only one RR, take it -2016-05-06 17:04:25 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-06 17:04:25 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:04:25 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:04:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:04:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:04:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 32 ms -2016-05-06 17:04:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:04:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:04:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 17:04:25 INFO WorkspaceExplorerServiceImpl:178 - end time - 368 msc 0 sec -2016-05-06 17:04:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-06 17:04:25 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 17:04:25 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:04:25 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:04:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:04:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:04:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-06 17:04:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:04:25 INFO WorkspaceExplorerServiceImpl:178 - end time - 340 msc 0 sec -2016-05-06 17:04:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:04:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:04:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:04:31 DEBUG DataMinerManagerServiceImpl:225 - DeleteItem(): ItemDescription [id=023ce370-1f2a-4c42-9a2f-0a8587182076, name=BIOCLIMATE_HCAF_ID_24795f1e-4d07-4bb2-97e9-8d3e6b051219, owner=giancarlo.panichi, path=/Workspace/DataMiner/Computations/BIOCLIMATE_HCAF_ID_24795f1e-4d07-4bb2-97e9-8d3e6b051219, type=GCUBE_ITEM, publicLink=null] -2016-05-06 17:04:31 DEBUG StorageUtil:280 - User: giancarlo.panichi, ItemId:023ce370-1f2a-4c42-9a2f-0a8587182076 -2016-05-06 17:04:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/Trash by giancarlo.panichi -2016-05-06 17:04:31 INFO JCRServlets:267 - Servlet getItemById 023ce370-1f2a-4c42-9a2f-0a8587182076 -2016-05-06 17:04:31 INFO JCRServlets:197 - Calling Servlet MoveToTrashIds on 1 by giancarlo.panichi -2016-05-06 17:04:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:04:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:04:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:04:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:04:31 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-06 17:04:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-06 17:04:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:04:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:04:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:04:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:04:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:04:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:04:31 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 17:04:31 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 17:04:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:04:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:04:31 INFO JCRServlets:697 - Calling Servlet get Parents By Id f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 17:04:31 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 17:04:31 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:04:31 INFO WorkspaceExplorerServiceImpl:178 - end time - 70 msc 0 sec -2016-05-06 17:04:31 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=f7245109-f1c3-4c5a-828d-3381919a5f5a, name=Computations, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 17:04:31 DEBUG WorkspaceExplorerServiceImpl:416 - item and parent limit are identical element, returning -2016-05-06 17:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:05:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:06:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:06:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:07:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:07:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:08:08 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-06 17:08:09 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-06 17:08:09 INFO DataMinerManagerServiceImpl:54 - DataMinerManager started! -2016-05-06 17:08:09 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 17:08:09 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 17:08:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:08:09 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 17:08:09 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@2f803eb9 -2016-05-06 17:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:09 INFO ASLSession:352 - Logging the entrance -2016-05-06 17:08:09 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 17:08:09 DEBUG TemplateModel:83 - 2016-05-06 17:08:09, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 17:08:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:08:09 DEBUG DataMinerManagerServiceImpl:73 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-06 17:08:10 INFO SessionUtil:49 - no user found in session, use test user -2016-05-06 17:08:10 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-06 17:08:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:08:10 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-06 17:08:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:10 INFO ASLSession:352 - Logging the entrance -2016-05-06 17:08:10 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-06 17:08:10 DEBUG TemplateModel:83 - 2016-05-06 17:08:10, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-06 17:08:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:08:10 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 17:08:10 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 121 ms -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-06 17:08:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-06 17:08:11 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-06 17:08:11 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:08:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-06 17:08:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@12ed2889 -2016-05-06 17:08:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@1e6c1163 -2016-05-06 17:08:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1ba23a6d -2016-05-06 17:08:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@b78fe2 -2016-05-06 17:08:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 90 ms -2016-05-06 17:08:11 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-06 17:08:11 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-06 17:08:11 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:08:11 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-06 17:08:11 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-06 17:08:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:08:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-06 17:08:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-06 17:08:11 DEBUG SClient4WPS:118 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-06 17:08:11 INFO SClient4WPS:123 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:08:11 DEBUG SClient4WPS:134 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-06 17:08:11 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 17:08:11 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 17:08:11 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 17:08:11 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 17:08:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:08:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:08:11 DEBUG DataMinerManagerServiceImpl:264 - getDataMinerWorkArea() -2016-05-06 17:08:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:11 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-06 17:08:11 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-06 17:08:11 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-06 17:08:11 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-06 17:08:11 DEBUG JCRRepository:271 - Initialize repository -2016-05-06 17:08:11 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-06 17:08:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-06 17:08:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:08:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-06 17:08:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 82 ms -2016-05-06 17:08:12 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-06 17:08:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-06 17:08:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-06 17:08:12 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 17:08:12 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 17:08:12 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-06 17:08:12 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-06 17:08:12 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-06 17:08:12 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:12 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 17:08:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-06 17:08:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:08:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-06 17:08:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:12 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:08:12 DEBUG SClient4WPS:255 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-06 17:08:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:08:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-06 17:08:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-06 17:08:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-06 17:08:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:14 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-06 17:08:14 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-06 17:08:14 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:14 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-06 17:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:14 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-06 17:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:14 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-06 17:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-06 17:08:14 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:14 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-06 17:08:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:08:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-06 17:08:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:08:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 17:08:14 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-06 17:08:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 21 ms -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:14 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 17:08:14 INFO ISClientConnector:82 - found only one RR, take it -2016-05-06 17:08:14 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-06 17:08:14 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-06 17:08:14 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-06 17:08:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:08:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:08:14 INFO WorkspaceExplorerServiceImpl:178 - end time - 96 msc 0 sec -2016-05-06 17:08:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:08:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:08:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-06 17:08:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-06 17:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 17:08:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:08:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-06 17:08:15 INFO WorkspaceExplorerServiceImpl:178 - end time - 354 msc 0 sec -2016-05-06 17:08:15 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-06 17:08:15 INFO ISClientConnector:61 - ISCACHE: ELEMENT EXTRACTED -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 17:08:15 DEBUG StorageClient:517 - set scope: /gcube -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 17:08:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-06 17:08:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-06 17:08:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-06 17:08:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:15 INFO WorkspaceExplorerServiceImpl:178 - end time - 334 msc 0 sec -2016-05-06 17:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:08:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:08:17 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-06 17:08:17 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:08:17 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 17:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:08:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:08:17 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-06 17:08:17 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:08:17 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 17:08:18 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-06 17:08:18 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-06 17:08:18 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-06 17:08:18 DEBUG SClient4WPS:310 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-06 17:08:18 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-06 17:08:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:08:18 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-06 17:08:18 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 17:08:18 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 17:08:18 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 17:08:18 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 17:08:18 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-06 17:08:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:08:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 17:08:18 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 17:08:18 DEBUG WPS2SM:111 - Machter find: true -2016-05-06 17:08:18 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-06 17:08:18 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-06 17:08:18 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-06 17:08:18 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-06 17:08:18 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-06 17:08:18 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-06 17:08:18 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-06 17:08:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:08:18 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-06 17:08:18 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-06 17:08:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:08:18 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-06 17:08:18 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-06 17:08:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:08:18 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 17:08:18 DEBUG SClient4WPS:656 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-06 17:08:18 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-06 17:08:18 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-06 17:08:18 DEBUG SClient4WPS:303 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-06 17:08:18 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-06 17:08:18 DEBUG SClient4WPS:310 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-06 17:08:18 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-06 17:08:18 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-06 17:08:18 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 17:08:18 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 17:08:18 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 17:08:18 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 17:08:18 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-06 17:08:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:08:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 17:08:18 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 17:08:18 DEBUG WPS2SM:111 - Machter find: true -2016-05-06 17:08:18 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-06 17:08:18 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-06 17:08:18 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-06 17:08:18 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-06 17:08:18 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-06 17:08:18 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-06 17:08:18 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-06 17:08:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:08:18 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-06 17:08:18 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-06 17:08:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:08:18 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-06 17:08:18 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-06 17:08:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:08:18 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 17:08:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-06 17:08:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-06 17:08:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 17:08:18 DEBUG SClient4WPS:656 - Parameters: [TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:08:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:08:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-06 17:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:08:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:18 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:18 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:08:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-06 17:08:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-06 17:08:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-06 17:08:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-06 17:08:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 17:08:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-06 17:08:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 17:08:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-06 17:08:18 INFO WorkspaceExplorerServiceImpl:138 - end time - 318 msc 0 sec -2016-05-06 17:08:18 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-06 17:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:08:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-06 17:08:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-06 17:08:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-06 17:08:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-06 17:08:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 17:08:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-06 17:08:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 17:08:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-06 17:08:20 INFO WorkspaceExplorerServiceImpl:138 - end time - 180 msc 0 sec -2016-05-06 17:08:20 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-06 17:08:37 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:08:37 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:37 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:37 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:08:37 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:08:37 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 17:08:37 DEBUG ServiceEngine:306 - get() - start -2016-05-06 17:08:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:08:37 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:08:37 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-06 17:08:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-06 17:08:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:08:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 17:08:37 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 17:08:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:08:37 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 17:08:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:08:37 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:08:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:08:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:08:37 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:37 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:08:37 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:08:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:08:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:37 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 17:08:37 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 17:08:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8c1b4c5b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@729517ab, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a451652, socketFactory=javax.net.DefaultSocketFactory@2dbc6ef7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:08:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:08:37 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 17:08:37 INFO WorkspaceExplorerServiceImpl:178 - end time - 50 msc 0 sec -2016-05-06 17:08:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:08:37 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 17:08:37 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 17:08:37 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:333060}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1441378, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:08:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:37 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2206456}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1400645, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:38 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1956799}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1458903, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:38 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:38 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1956800}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1956800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1956800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1956800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 17:08:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1956800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1956800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1956800}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:38 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 17:08:38 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 17:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:08:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:08:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:38 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 17:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:38 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 17:08:38 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 17:08:38 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-06 17:08:38 DEBUG ServiceEngine:306 - get() - start -2016-05-06 17:08:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:08:38 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:08:38 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-05-06 17:08:38 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 17:08:38 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:08:38 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 17:08:38 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 17:08:38 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:08:38 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-06 17:08:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:08:38 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:08:38 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:08:38 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:08:38 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:08:38 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:08:38 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:38 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:38 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:38 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8c1b4c5b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@729517ab, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a451652, socketFactory=javax.net.DefaultSocketFactory@2dbc6ef7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:08:38 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:08:38 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:08:38 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1956801}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:333061}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1441488, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1403751, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:38 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:08:38 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:38 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:38 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:38 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2206457}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=917928, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:38 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:38 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 17:08:38 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-05-06 17:08:38 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1956802}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1956802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1956802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1956802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-06 17:08:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1956802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-06 17:08:38 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1956802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 DEBUG command:56 - Command execution completed -2016-05-06 17:08:38 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1956802}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:38 INFO WorkspaceExplorerServiceImpl:178 - end time - 45 msc 0 sec -2016-05-06 17:08:38 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:08:38 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 17:08:38 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 17:08:38 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 17:08:38 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 17:08:39 DEBUG query:56 - Query completed -2016-05-06 17:08:39 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2206456} -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:333060} -2016-05-06 17:08:39 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1956800}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1956800} -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1956799} -2016-05-06 17:08:39 INFO MongoIO:508 - Mongo has been closed -2016-05-06 17:08:39 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 17:08:39 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 17:08:39 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:3} -2016-05-06 17:08:39 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1620405}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:08:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:08:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2039218, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-06 17:08:39 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 17:08:39 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 17:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:39 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 17:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:39 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 17:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:39 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 17:08:39 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 17:08:39 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 17:08:39 INFO WorkspaceExplorerServiceImpl:491 - returning size: 849 -2016-05-06 17:08:39 DEBUG query:56 - Query completed -2016-05-06 17:08:39 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2206457} -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:333061} -2016-05-06 17:08:39 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1956802}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1956802} -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1620405} -2016-05-06 17:08:39 INFO MongoIO:508 - Mongo has been closed -2016-05-06 17:08:39 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-06 17:08:39 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1956801} -2016-05-06 17:08:39 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-05-06 17:08:39 INFO WorkspaceExplorerServiceImpl:491 - returning size: 849 -2016-05-06 17:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:08:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:08:40 DEBUG DataMinerManagerServiceImpl:245 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-05-06 17:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:40 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 17:08:40 DEBUG ServiceEngine:193 - get() - start -2016-05-06 17:08:40 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:08:40 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:08:40 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-06 17:08:40 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-06 17:08:40 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:08:40 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 17:08:40 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-06 17:08:40 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:08:40 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:08:40 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:08:40 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 17:08:40 DEBUG Operation:173 - get(String) - start -2016-05-06 17:08:40 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:08:40 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:08:40 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:08:40 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:08:40 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:40 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:40 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:40 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8c1b4c5b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@729517ab, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a451652, socketFactory=javax.net.DefaultSocketFactory@2dbc6ef7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:08:40 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:08:40 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:08:40 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:333063}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:40 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1956803}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:40 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1294528, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:40 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:08:40 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:40 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1672566, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:40 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:40 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2206458}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:40 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=882074, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:41 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1620407}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1298050, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-06 17:08:41 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1956804}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 17:08:41 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 17:08:41 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 17:08:41 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG query:56 - Query completed -2016-05-06 17:08:41 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-06 17:08:41 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 17:08:41 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-06 17:08:41 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG update:56 - Update completed -2016-05-06 17:08:41 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1956804}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG query:56 - Query completed -2016-05-06 17:08:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:08:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:08:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:08:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:08:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:08:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:08:41 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-05-06 17:08:41 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-05-06 17:08:41 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-06 17:08:41 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-06 17:08:41 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:08:41 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:08:41 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-05-06 17:08:41 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-05-06 17:08:41 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-06 17:08:41 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:08:41 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-06 17:08:41 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-06 17:08:41 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:08:41 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:08:41 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:08:41 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:08:41 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:08:41 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:08:41 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:08:41 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:41 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:41 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:41 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8c1b4c5b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@729517ab, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a451652, socketFactory=javax.net.DefaultSocketFactory@2dbc6ef7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:08:41 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:08:41 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:08:41 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1956805}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1153203, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:41 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:08:41 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:41 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:08:41 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:41 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:333064}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1154214, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:41 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2206459}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=830602, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:08:41 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1620408}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1215452, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:08:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-06 17:08:41 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1956806}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1956806}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1956806}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1956806}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 17:08:41 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 17:08:41 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1956806}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1956806}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG command:56 - Command execution completed -2016-05-06 17:08:41 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 17:08:41 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1956806}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG query:56 - Query completed -2016-05-06 17:08:41 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-05-06 17:08:41 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2206459} -2016-05-06 17:08:41 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1620408} -2016-05-06 17:08:41 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1956806}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:08:41 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:333064} -2016-05-06 17:08:41 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1956806} -2016-05-06 17:08:41 INFO MongoIO:508 - Mongo has been closed -2016-05-06 17:08:41 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1956805} -2016-05-06 17:08:41 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-05-06 17:08:41 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-06 17:08:41 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-06 17:08:41 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-06 17:08:41 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-06 17:08:41 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-05-06 17:08:41 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-06 17:08:41 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-06 17:08:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:08:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-06 17:08:42 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2206458} -2016-05-06 17:08:42 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1956804}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:08:42 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1620407} -2016-05-06 17:08:42 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:333063} -2016-05-06 17:08:42 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1956804} -2016-05-06 17:08:42 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1956803} -2016-05-06 17:08:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:08:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:08:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:08:53 DEBUG DataMinerManagerServiceImpl:135 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-05-06 17:08:53 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-06 17:08:53 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 17:08:53 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 17:08:53 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 17:08:53 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 17:08:53 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-06 17:08:53 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-06 17:08:53 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:53 DEBUG SClient4WPS:683 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 17:08:53 DEBUG WPS2SM:300 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-06 17:08:53 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:53 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:08:53 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 17:08:53 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 17:08:53 DEBUG WPS2SM:111 - Machter find: true -2016-05-06 17:08:53 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-06 17:08:53 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-06 17:08:53 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-06 17:08:53 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-06 17:08:53 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-06 17:08:53 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-06 17:08:53 DEBUG WPS2SM:339 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-06 17:08:53 DEBUG WPS2SM:340 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-06 17:08:53 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:53 DEBUG SClient4WPS:683 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-06 17:08:53 DEBUG WPS2SM:300 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-06 17:08:53 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:53 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:08:53 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-06 17:08:53 DEBUG WPS2SM:339 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-06 17:08:53 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-06 17:08:53 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:53 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-06 17:08:53 DEBUG WPS2SM:300 - Conversion to SM Type->epsilon is a Literal Input -2016-05-06 17:08:53 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:53 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:08:53 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-06 17:08:53 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-06 17:08:53 DEBUG WPS2SM:340 - Conversion to SM Type->Name:epsilon -2016-05-06 17:08:53 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:53 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-06 17:08:53 DEBUG WPS2SM:300 - Conversion to SM Type->min_points is a Literal Input -2016-05-06 17:08:53 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:08:53 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:08:53 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 17:08:53 DEBUG WPS2SM:339 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-06 17:08:53 DEBUG WPS2SM:340 - Conversion to SM Type->Name:min_points -2016-05-06 17:08:53 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:08:53 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 17:08:53 DEBUG SClient4WPS:691 - UserInputs[key=OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0] -2016-05-06 17:08:53 DEBUG SClient4WPS:691 - UserInputs[key=FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean] -2016-05-06 17:08:53 DEBUG SClient4WPS:691 - UserInputs[key=OccurrencePointsClusterLabel, value=test] -2016-05-06 17:08:53 DEBUG SClient4WPS:691 - UserInputs[key=epsilon, value=10] -2016-05-06 17:08:53 DEBUG SClient4WPS:691 - UserInputs[key=min_points, value=1] -2016-05-06 17:08:53 DEBUG SClient4WPS:744 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-05-06 17:08:53 DEBUG SClient4WPS:727 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-05-06 17:08:53 DEBUG SClient4WPS:727 - Configuring Literal: OccurrencePointsClusterLabel to: test -2016-05-06 17:08:53 DEBUG SClient4WPS:727 - Configuring Literal: epsilon to: 10 -2016-05-06 17:08:53 DEBUG SClient4WPS:727 - Configuring Literal: min_points to: 1 -2016-05-06 17:08:53 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 17:08:59 DEBUG SClient4WPS:388 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-05-06 17:08:59 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-06 17:08:59 DEBUG SClient4WPS:415 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=7c7e6c26-84f5-4757-a590-baf5b54554d4 -2016-05-06 17:08:59 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:08:59 DEBUG SClient4WPS:787 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=7c7e6c26-84f5-4757-a590-baf5b54554d4 -2016-05-06 17:08:59 DEBUG SClient4WPS:697 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=7c7e6c26-84f5-4757-a590-baf5b54554d4 -2016-05-06 17:08:59 DEBUG SClient4WPS:708 - ComputationId: ComputationId [id=7c7e6c26-84f5-4757-a590-baf5b54554d4, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=7c7e6c26-84f5-4757-a590-baf5b54554d4] -2016-05-06 17:09:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:09:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:09:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:09:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:09:09 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=7c7e6c26-84f5-4757-a590-baf5b54554d4, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=7c7e6c26-84f5-4757-a590-baf5b54554d4] -2016-05-06 17:09:09 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:09:09 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:09:09 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=7c7e6c26-84f5-4757-a590-baf5b54554d4 -2016-05-06 17:09:09 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:09:09 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:09:09 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:09:09 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/UHJZZGlmMHc5RE51OUtmNGlWNFVMQjZra1N4RTBvNThHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-06 17:09:09 DEBUG SClient4WPS:875 - WPS SUCCESS -2016-05-06 17:09:09 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-06 17:09:10 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=7c7e6c26-84f5-4757-a590-baf5b54554d4, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=7c7e6c26-84f5-4757-a590-baf5b54554d4] -2016-05-06 17:09:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:09:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:09:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:09:10 DEBUG SClient4WPS:436 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=7c7e6c26-84f5-4757-a590-baf5b54554d4 -2016-05-06 17:09:10 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=7c7e6c26-84f5-4757-a590-baf5b54554d4 -2016-05-06 17:09:10 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:09:10 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:09:10 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:09:10 DEBUG SClient4WPS:447 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/UHJZZGlmMHc5RE51OUtmNGlWNFVMQjZra1N4RTBvNThHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-05-06 17:09:10 DEBUG SClient4WPS:970 - Process Executed -2016-05-06 17:09:10 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 17:09:10 DEBUG SClient4WPS:574 - Node Name: #text -2016-05-06 17:09:10 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 17:09:10 DEBUG SClient4WPS:574 - Node Name: ogr:FeatureCollection -2016-05-06 17:09:10 DEBUG SClient4WPS:574 - Node Name: gml:featureMember -2016-05-06 17:09:10 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 17:09:10 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/UHJZZGlmMHc5RE51OUtmNGlWNFVMQjZra1N4RTBvNThHbWJQNStIS0N6Yz0 -2016-05-06 17:09:10 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-05-06 17:09:10 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-06 17:09:10 DEBUG SClient4WPS:516 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/UHJZZGlmMHc5RE51OUtmNGlWNFVMQjZra1N4RTBvNThHbWJQNStIS0N6Yz0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], mimeType=text/csv] -2016-05-06 17:09:10 DEBUG SClient4WPS:1018 - Adding OBJ:F0 -2016-05-06 17:09:10 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/UHJZZGlmMHc5RE51OUtmNGlWNFVMQjZra1N4RTBvNThHbWJQNStIS0N6Yz0, name=F0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=OBJECT] -2016-05-06 17:09:10 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/UHJZZGlmMHc5RE51OUtmNGlWNFVMQjZra1N4RTBvNThHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getDescription()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-06 17:09:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:09:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:09:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:09:17 INFO SClient4WPS:635 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING -2016-05-06 17:09:17 DEBUG SClient4WPS:274 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:09:17 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 17:09:18 DEBUG SClient4WPS:297 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt - - - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - maxent_ - - - - SpeciesName - The name of the species to model and the occurrence records refer to - Name of the parameter: SpeciesName. The name of the species to model and the occurrence records refer to - - - - generic_species - - - - MaxIterations - The number of learning iterations of the MaxEnt algorithm - Name of the parameter: MaxIterations. The number of learning iterations of the MaxEnt algorithm - - - - 1000 - - - - DefaultPrevalence - A priori probability of presence at ordinary occurrence points - Name of the parameter: DefaultPrevalence. A priori probability of presence at ordinary occurrence points - - - - 0.5 - - - - OccurrencesTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrencesTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - LongitudeColumn - The column containing longitude values [the name of a column from OccurrencesTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrencesTable] - - - - decimallongitude - - - - LatitudeColumn - The column containing latitude values [the name of a column from OccurrencesTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrencesTable] - - - - decimallatitude - - - - XResolution - Model projection resolution on the X axis in decimal degrees - Name of the parameter: XResolution. Model projection resolution on the X axis in decimal degrees - - - - 1 - - - - YResolution - Model projection resolution on the Y axis in decimal degrees - Name of the parameter: YResolution. Model projection resolution on the Y axis in decimal degrees - - - - 1 - - - - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - - - - - - - Z - Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - - - TimeIndex - Time Index. The default is the first time indexed in the input environmental datasets - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed in the input environmental datasets - - - - 0 - - - - - - Best Threshold - Best threshold for transforming MaxEnt values into 0/1 probability assignments - Name of the parameter: Best Threshold. Best threshold for transforming MaxEnt values into 0/1 probability assignments - - - - - - Estimated Prevalence - The a posteriori estimated prevalence of the species - Name of the parameter: Estimated Prevalence. The a posteriori estimated prevalence of the species - - - - - - Variables contributions - The contribution of each variable to the MaxEnt values estimates - Name of the parameter: Variables contributions. The contribution of each variable to the MaxEnt values estimates - - - - - - Variables Permutations Importance - The importance of the permutations of the variables during the training - Name of the parameter: Variables Permutations Importance. The importance of the permutations of the variables during the training - - - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - Name of the parameter: ASCII Maps of the environmental layers for checking features aligments. ASCII Maps of the environmental layers for checking features aligments - - - - application/d4science - - - - - application/d4science - - - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable7. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-06 17:09:18 DEBUG SClient4WPS:301 - WPSClient->Fetching Inputs -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - maxent_ - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - SpeciesName - The name of the species to model and the occurrence records refer to - Name of the parameter: SpeciesName. The name of the species to model and the occurrence records refer to - - - - generic_species - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - MaxIterations - The number of learning iterations of the MaxEnt algorithm - Name of the parameter: MaxIterations. The number of learning iterations of the MaxEnt algorithm - - - - 1000 - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - DefaultPrevalence - A priori probability of presence at ordinary occurrence points - Name of the parameter: DefaultPrevalence. A priori probability of presence at ordinary occurrence points - - - - 0.5 - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - OccurrencesTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrencesTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - LongitudeColumn - The column containing longitude values [the name of a column from OccurrencesTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrencesTable] - - - - decimallongitude - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - LatitudeColumn - The column containing latitude values [the name of a column from OccurrencesTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrencesTable] - - - - decimallatitude - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - XResolution - Model projection resolution on the X axis in decimal degrees - Name of the parameter: XResolution. Model projection resolution on the X axis in decimal degrees - - - - 1 - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - YResolution - Model projection resolution on the Y axis in decimal degrees - Name of the parameter: YResolution. Model projection resolution on the Y axis in decimal degrees - - - - 1 - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - - - - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - Z - Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - -2016-05-06 17:09:18 DEBUG SClient4WPS:303 - WPSClient->Input: - TimeIndex - Time Index. The default is the first time indexed in the input environmental datasets - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed in the input environmental datasets - - - - 0 - - -2016-05-06 17:09:18 DEBUG SClient4WPS:308 - WPSClient->Fetching Outputs -2016-05-06 17:09:18 DEBUG SClient4WPS:310 - WPSClient->Output: - Best Threshold - Best threshold for transforming MaxEnt values into 0/1 probability assignments - Name of the parameter: Best Threshold. Best threshold for transforming MaxEnt values into 0/1 probability assignments - - - - -2016-05-06 17:09:18 DEBUG SClient4WPS:310 - WPSClient->Output: - Estimated Prevalence - The a posteriori estimated prevalence of the species - Name of the parameter: Estimated Prevalence. The a posteriori estimated prevalence of the species - - - - -2016-05-06 17:09:18 DEBUG SClient4WPS:310 - WPSClient->Output: - Variables contributions - The contribution of each variable to the MaxEnt values estimates - Name of the parameter: Variables contributions. The contribution of each variable to the MaxEnt values estimates - - - - -2016-05-06 17:09:18 DEBUG SClient4WPS:310 - WPSClient->Output: - Variables Permutations Importance - The importance of the permutations of the variables during the training - Name of the parameter: Variables Permutations Importance. The importance of the permutations of the variables during the training - - - - -2016-05-06 17:09:18 DEBUG SClient4WPS:310 - WPSClient->Output: - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - Name of the parameter: ASCII Maps of the environmental layers for checking features aligments. ASCII Maps of the environmental layers for checking features aligments - - - - application/d4science - - - - - application/d4science - - - - -2016-05-06 17:09:18 DEBUG SClient4WPS:310 - WPSClient->Output: - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable7. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-06 17:09:18 DEBUG SClient4WPS:310 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-06 17:09:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: maxent_ -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the table to produce -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OutputTableLabel -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->SpeciesName is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: generic_species -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the species to model and the occurrence records refer to -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:SpeciesName -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->MaxIterations is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: 1000 -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The number of learning iterations of the MaxEnt algorithm -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:MaxIterations -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->DefaultPrevalence is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A priori probability of presence at ordinary occurrence points -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:DefaultPrevalence -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-06 17:09:18 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencesTable is a Complex Input -2016-05-06 17:09:18 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 17:09:18 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 17:09:18 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 17:09:18 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencesTable -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->LongitudeColumn is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: decimallongitude -2016-05-06 17:09:18 DEBUG WPS2SM:129 - Machter title: The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude] -2016-05-06 17:09:18 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 17:09:18 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 17:09:18 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-06 17:09:18 DEBUG WPS2SM:133 - Machter end: 82 -2016-05-06 17:09:18 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 17:09:18 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing longitude values [the name of a column from OccurrencesTable] -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LongitudeColumn -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->LatitudeColumn is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: decimallatitude -2016-05-06 17:09:18 DEBUG WPS2SM:129 - Machter title: The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude] -2016-05-06 17:09:18 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 17:09:18 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 17:09:18 DEBUG WPS2SM:132 - Machter start: 39 -2016-05-06 17:09:18 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-06 17:09:18 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 17:09:18 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing latitude values [the name of a column from OccurrencesTable] -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LatitudeColumn -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->XResolution is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the X axis in decimal degrees -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:XResolution -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->YResolution is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the Y axis in decimal degrees -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:YResolution -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->Layers is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 17:09:18 DEBUG WPS2SM:148 - Machter title: The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 17:09:18 DEBUG WPS2SM:149 - Machter find: true -2016-05-06 17:09:18 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-06 17:09:18 DEBUG WPS2SM:151 - Machter start: 501 -2016-05-06 17:09:18 DEBUG WPS2SM:152 - Machter end: 536 -2016-05-06 17:09:18 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-06 17:09:18 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Layers -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->Z is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Z -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 17:09:18 DEBUG WPS2SM:300 - Conversion to SM Type->TimeIndex is a Literal Input -2016-05-06 17:09:18 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:09:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:09:18 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 17:09:18 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Time Index. The default is the first time indexed in the input environmental datasets -2016-05-06 17:09:18 DEBUG WPS2SM:340 - Conversion to SM Type->Name:TimeIndex -2016-05-06 17:09:18 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:09:18 DEBUG SClient4WPS:652 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 17:09:18 DEBUG SClient4WPS:656 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN], Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN], ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-06 17:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:09:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:09:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:09:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:09:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-06 17:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:09:18 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:09:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:09:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:09:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:09:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:09:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-06 17:09:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:09:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:09:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:09:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:09:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:09:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:09:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:09:22 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:09:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:09:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-06 17:09:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:09:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:09:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:09:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-06 17:09:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-06 17:09:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-06 17:09:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-06 17:09:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-06 17:09:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 17:09:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-06 17:09:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-06 17:09:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-06 17:09:22 INFO WorkspaceExplorerServiceImpl:138 - end time - 284 msc 0 sec -2016-05-06 17:09:22 INFO WorkspaceExplorerServiceImpl:141 - Returning children size: 41 -2016-05-06 17:09:26 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:09:26 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:09:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:09:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:09:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:09:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:26 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:09:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:09:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:09:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:09:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:09:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:09:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:09:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:09:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:09:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:09:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:09:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:09:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:09:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:09:27 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 17:09:27 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 17:09:27 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-06 17:09:27 DEBUG ServiceEngine:306 - get() - start -2016-05-06 17:09:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:09:27 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:09:27 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-06 17:09:27 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-06 17:09:27 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:09:27 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 17:09:27 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 17:09:27 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:09:27 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 17:09:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:09:27 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:09:27 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:09:27 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:09:27 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:09:27 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:09:27 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:27 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:27 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:27 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8c1b4c5b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@729517ab, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a451652, socketFactory=javax.net.DefaultSocketFactory@2dbc6ef7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:09:27 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:09:27 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:09:27 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:333136}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1956907}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1171764, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:27 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:09:27 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1897007, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:27 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:27 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:27 INFO WorkspaceExplorerServiceImpl:178 - end time - 201 msc 0 sec -2016-05-06 17:09:27 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2206515}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2554108, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:27 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1620464}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1341307, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-06 17:09:27 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1956908}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1956908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG command:56 - Command execution completed -2016-05-06 17:09:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1956908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG command:56 - Command execution completed -2016-05-06 17:09:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1956908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG command:56 - Command execution completed -2016-05-06 17:09:27 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 17:09:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1956908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG command:56 - Command execution completed -2016-05-06 17:09:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1956908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:27 DEBUG command:56 - Command execution completed -2016-05-06 17:09:27 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1956908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-06 17:09:28 DEBUG query:56 - Query completed -2016-05-06 17:09:28 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-06 17:09:28 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2206515} -2016-05-06 17:09:28 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:333136} -2016-05-06 17:09:28 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1620464} -2016-05-06 17:09:28 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1956908}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:09:28 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1956908} -2016-05-06 17:09:28 INFO MongoIO:508 - Mongo has been closed -2016-05-06 17:09:28 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 17:09:28 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1956907} -2016-05-06 17:09:28 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-06 17:09:28 INFO WorkspaceExplorerServiceImpl:491 - returning size: 4033313 -2016-05-06 17:09:29 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 17:09:29 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 17:09:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:09:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:09:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:09:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:29 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 17:09:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:09:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:09:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:09:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:09:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:09:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:09:29 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:09:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:09:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:09:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:29 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 17:09:29 INFO JCRServlets:267 - Servlet getItemById e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 17:09:29 INFO JCRServlets:267 - Servlet getItemById e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 17:09:29 INFO JCRServlets:267 - Servlet getItemById e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 17:09:29 INFO JCRServlets:267 - Servlet getItemById e8663e07-6286-4212-920c-54dd7bbf205c -2016-05-06 17:09:29 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 17:09:29 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 17:09:29 INFO JCRServlets:142 - Calling servlet getChildrenById e8663e07-6286-4212-920c-54dd7bbf205c by giancarlo.panichi -2016-05-06 17:09:29 INFO JCRServlets:697 - Calling Servlet get Parents By Id e8663e07-6286-4212-920c-54dd7bbf205c by giancarlo.panichi -2016-05-06 17:09:29 INFO JCRServlets:142 - Calling servlet getChildrenById e8663e07-6286-4212-920c-54dd7bbf205c by giancarlo.panichi -2016-05-06 17:09:29 DEBUG ServiceEngine:306 - get() - start -2016-05-06 17:09:29 INFO WorkspaceExplorerServiceImpl:178 - end time - 50 msc 0 sec -2016-05-06 17:09:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:09:29 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:09:29 DEBUG ServiceEngine:62 - path(String) - name: Max_Ent_Niche_Modelling -2016-05-06 17:09:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-06 17:09:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:09:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 17:09:29 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-06 17:09:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:09:29 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ -2016-05-06 17:09:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:09:29 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:09:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:09:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:09:29 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:09:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:09:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8c1b4c5b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@729517ab, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a451652, socketFactory=javax.net.DefaultSocketFactory@2dbc6ef7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:09:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:09:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:09:29 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:333137}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1191041, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:09:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:29 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2206517}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=924700, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:29 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1956909}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1643891, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:29 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1620465}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1729780, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-06 17:09:29 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1956910}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1956910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG command:56 - Command execution completed -2016-05-06 17:09:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1956910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG command:56 - Command execution completed -2016-05-06 17:09:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1956910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG command:56 - Command execution completed -2016-05-06 17:09:29 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling -2016-05-06 17:09:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1956910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG command:56 - Command execution completed -2016-05-06 17:09:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1956910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:29 DEBUG command:56 - Command execution completed -2016-05-06 17:09:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1956910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-06 17:09:30 INFO WorkspaceExplorerServiceImpl:588 - getFormattedSize ByItemId 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 17:09:30 INFO WorkspaceExplorerServiceImpl:474 - get Size By ItemId 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:09:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:09:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:30 INFO WorkspaceExplorerServiceImpl:506 - get MimeType By ItemId 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:09:30 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-06 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-06 17:09:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:30 INFO WorkspaceExplorerServiceImpl:537 - Get user ACL to FOLDER id: 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:09:30 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:09:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:09:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:30 DEBUG query:56 - Query completed -2016-05-06 17:09:30 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-05-06 17:09:30 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2206517} -2016-05-06 17:09:30 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:333137} -2016-05-06 17:09:30 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1620465} -2016-05-06 17:09:30 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1956910}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:09:30 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1956910} -2016-05-06 17:09:30 INFO MongoIO:508 - Mongo has been closed -2016-05-06 17:09:30 INFO DefaultMongoClient:1329 - getFolderTotalVolume 96531 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling -2016-05-06 17:09:30 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling -2016-05-06 17:09:30 INFO WorkspaceExplorerServiceImpl:491 - returning size: 96531 -2016-05-06 17:09:30 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1956909} -2016-05-06 17:09:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:09:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:09:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:09:32 DEBUG DataMinerManagerServiceImpl:245 - retrieveTableInformation(): Item [id=8e60c918-6148-4c5b-9fd0-2dcefa90fa90, name=Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 18:11:30 CET 2016] -2016-05-06 17:09:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:39 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-06 17:09:39 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 17:09:39 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 17:09:39 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 17:09:39 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 17:09:39 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=e8663e07-6286-4212-920c-54dd7bbf205c, name=Max_Ent_Niche_Modelling, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 17:09:39 INFO WorkspaceExplorerServiceImpl:491 - returning size: 96531 -2016-05-06 17:09:39 DEBUG ServiceEngine:193 - get() - start -2016-05-06 17:09:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:09:39 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:09:39 DEBUG ServiceEngine:62 - path(String) - name: Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ -2016-05-06 17:09:39 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:09:39 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-06 17:09:39 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-06 17:09:39 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:09:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:09:39 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:09:39 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 DEBUG Operation:173 - get(String) - start -2016-05-06 17:09:39 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:09:39 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:09:39 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:09:39 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:09:39 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:39 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:39 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8c1b4c5b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@729517ab, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a451652, socketFactory=javax.net.DefaultSocketFactory@2dbc6ef7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:09:39 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:09:39 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:09:39 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:333149}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1956927}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1302181, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1076547, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:39 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:09:39 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:39 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:39 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2206527}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1107049, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:39 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-06 17:09:39 DEBUG ItemBuilder:389 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1956930}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1620476}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1381755, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 17:09:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG query:56 - Query completed -2016-05-06 17:09:39 INFO MongoIO:186 - object found Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-06 17:09:39 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-06 17:09:39 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG update:56 - Update completed -2016-05-06 17:09:39 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1956930}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG query:56 - Query completed -2016-05-06 17:09:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-06 17:09:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-06 17:09:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-06 17:09:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-06 17:09:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-06 17:09:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-06 17:09:39 INFO JCRServlets:267 - Servlet getItemById 8e60c918-6148-4c5b-9fd0-2dcefa90fa90 -2016-05-06 17:09:39 INFO JCRWorkspaceItem:998 - get PublicLink for item: Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-06 17:09:39 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-06 17:09:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:09:39 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:09:39 DEBUG ServiceEngine:62 - path(String) - name: Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/ -2016-05-06 17:09:39 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-06 17:09:39 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-06 17:09:39 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-06 17:09:39 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-06 17:09:39 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-06 17:09:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-06 17:09:39 DEBUG BucketCoding:42 - coding name done -2016-05-06 17:09:39 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-06 17:09:39 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-06 17:09:39 DEBUG MongoIO:77 - open mongo connection -2016-05-06 17:09:39 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-06 17:09:39 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:39 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:39 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8c1b4c5b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@729517ab, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1a451652, socketFactory=javax.net.DefaultSocketFactory@2dbc6ef7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-06 17:09:39 INFO MongoIO:106 - new mongo connection pool opened -2016-05-06 17:09:39 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1956931}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2043724, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:39 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-06 17:09:39 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:39 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-06 17:09:39 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2206528}] to mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=901995, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:333151}] to mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=922934, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1956933}] to mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1956933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1956933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1956933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1956933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1620477}] to mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1956933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 DEBUG command:56 - Command execution completed -2016-05-06 17:09:39 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1956933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2162871, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-06 17:09:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-06 17:09:39 DEBUG query:56 - Query completed -2016-05-06 17:09:39 INFO MongoIO:186 - object found Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2206528} -2016-05-06 17:09:39 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:333151} -2016-05-06 17:09:39 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1956933}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:09:39 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1620477} -2016-05-06 17:09:39 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1956933} -2016-05-06 17:09:39 INFO MongoIO:508 - Mongo has been closed -2016-05-06 17:09:39 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1956931} -2016-05-06 17:09:39 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Max_Ent_Niche_Modelling/Latimeria_chalumnae_scientific_name_occurrences_from_OBISGBIF_-_CSV_STANDARD.csv -2016-05-06 17:09:39 INFO Operation:55 - URL generated: smp://data-d.d4science.org/mVHKwdH+VOfVW2bfDjeAkGie6DAgHZc0GmbP5+HKCzc= -2016-05-06 17:09:39 INFO Operation:57 - URL generated: smp://data-d.d4science.org/mVHKwdH+VOfVW2bfDjeAkGie6DAgHZc0GmbP5+HKCzc= -2016-05-06 17:09:39 DEBUG Operation:87 - translating: http://data-d.d4science.org/mVHKwdH+VOfVW2bfDjeAkGie6DAgHZc0GmbP5+HKCzc= -2016-05-06 17:09:39 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-06 17:09:39 DEBUG Operation:93 - get params: http://data-d.d4science.org/ mVHKwdH+VOfVW2bfDjeAkGie6DAgHZc0GmbP5+HKCzc= -2016-05-06 17:09:39 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0 -2016-05-06 17:09:39 INFO Operation:65 - URL translated: http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0 -2016-05-06 17:09:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-06 17:09:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-06 17:09:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 17:09:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 17:09:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-06 17:09:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 17:09:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-06 17:09:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-06 17:09:53 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2206527} -2016-05-06 17:09:53 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1956930}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-06 17:09:53 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1956930} -2016-05-06 17:09:53 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:333149} -2016-05-06 17:09:53 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1956927} -2016-05-06 17:09:53 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1620476} -2016-05-06 17:09:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:09:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:10:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:10:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:10:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:10:13 DEBUG DataMinerManagerServiceImpl:135 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=maxent_, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=Latimeria, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=1000, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=0.5, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], TabularParameter [tableName=http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN], Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN], ObjectParameter [type=java.lang.Double, defaultValue=1, value=1.0, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=1, value=1.0, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ListParameter [type=java.lang.String, value=fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.Double, defaultValue=0, value=0.0, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=0, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]], hasImage=false]] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: maxent_ -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the table to produce -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OutputTableLabel -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->SpeciesName is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: generic_species -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the species to model and the occurrence records refer to -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:SpeciesName -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->MaxIterations is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: 1000 -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The number of learning iterations of the MaxEnt algorithm -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:MaxIterations -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->DefaultPrevalence is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A priori probability of presence at ordinary occurrence points -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:DefaultPrevalence -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-06 17:10:13 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencesTable is a Complex Input -2016-05-06 17:10:13 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 17:10:13 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 17:10:13 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 17:10:13 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencesTable -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->LongitudeColumn is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: decimallongitude -2016-05-06 17:10:13 DEBUG WPS2SM:129 - Machter title: The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude] -2016-05-06 17:10:13 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 17:10:13 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 17:10:13 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-06 17:10:13 DEBUG WPS2SM:133 - Machter end: 82 -2016-05-06 17:10:13 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 17:10:13 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing longitude values [the name of a column from OccurrencesTable] -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LongitudeColumn -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->LatitudeColumn is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: decimallatitude -2016-05-06 17:10:13 DEBUG WPS2SM:129 - Machter title: The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude] -2016-05-06 17:10:13 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 17:10:13 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 17:10:13 DEBUG WPS2SM:132 - Machter start: 39 -2016-05-06 17:10:13 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-06 17:10:13 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 17:10:13 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing latitude values [the name of a column from OccurrencesTable] -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LatitudeColumn -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->XResolution is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the X axis in decimal degrees -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:XResolution -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->YResolution is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the Y axis in decimal degrees -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:YResolution -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->Layers is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 17:10:13 DEBUG WPS2SM:148 - Machter title: The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 17:10:13 DEBUG WPS2SM:149 - Machter find: true -2016-05-06 17:10:13 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-06 17:10:13 DEBUG WPS2SM:151 - Machter start: 501 -2016-05-06 17:10:13 DEBUG WPS2SM:152 - Machter end: 536 -2016-05-06 17:10:13 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-06 17:10:13 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Layers -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->Z is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Z -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 17:10:13 DEBUG WPS2SM:300 - Conversion to SM Type->TimeIndex is a Literal Input -2016-05-06 17:10:13 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:10:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:10:13 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 17:10:13 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Time Index. The default is the first time indexed in the input environmental datasets -2016-05-06 17:10:13 DEBUG WPS2SM:340 - Conversion to SM Type->Name:TimeIndex -2016-05-06 17:10:13 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:10:13 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=OutputTableLabel, value=maxent_] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=SpeciesName, value=Latimeria] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=MaxIterations, value=1000] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=DefaultPrevalence, value=0.5] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=OccurrencesTable, value=http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=LongitudeColumn, value=decimalLongitude] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=LatitudeColumn, value=decimalLatitude] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=XResolution, value=1.0] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=YResolution, value=1.0] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=Layers, value=fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=Z, value=0.0] -2016-05-06 17:10:13 DEBUG SClient4WPS:691 - UserInputs[key=TimeIndex, value=0] -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: OutputTableLabel to: maxent_ -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: SpeciesName to: Latimeria -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: MaxIterations to: 1000 -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: DefaultPrevalence to: 0.5 -2016-05-06 17:10:13 DEBUG SClient4WPS:744 - Configuring Complex: OccurrencesTable to: http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0 -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: LongitudeColumn to: decimalLongitude -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: LatitudeColumn to: decimalLatitude -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: XResolution to: 1.0 -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: YResolution to: 1.0 -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: Layers to: fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31 -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: Z to: 0.0 -2016-05-06 17:10:13 DEBUG SClient4WPS:727 - Configuring Literal: TimeIndex to: 0 -2016-05-06 17:10:13 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 17:10:13 DEBUG SClient4WPS:388 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - - - OutputTableLabel - - maxent_ - - - - SpeciesName - - Latimeria - - - - MaxIterations - - 1000 - - - - DefaultPrevalence - - 0.5 - - - - OccurrencesTable - - - - LongitudeColumn - - decimalLongitude - - - - LatitudeColumn - - decimalLatitude - - - - XResolution - - 1.0 - - - - YResolution - - 1.0 - - - - Layers - - fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31 - - - - Z - - 0.0 - - - - TimeIndex - - 0 - - - - - - - ASCII Maps of the environmental layers for checking features aligments - - - OutputTable7 - - - non_deterministic_output - - - - -2016-05-06 17:10:13 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-06 17:10:13 DEBUG SClient4WPS:415 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:10:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:10:13 DEBUG SClient4WPS:787 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:10:13 DEBUG SClient4WPS:697 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:10:13 DEBUG SClient4WPS:708 - ComputationId: ComputationId [id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f] -2016-05-06 17:10:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:10:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:10:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:10:23 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f] -2016-05-06 17:10:23 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:10:23 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:10:23 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:10:23 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:10:23 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:10:23 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:10:23 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 17:10:23 DEBUG SClient4WPS:889 - WPS STATUS:0.0 -2016-05-06 17:10:23 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=0.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 17:10:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:10:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:10:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:10:33 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f] -2016-05-06 17:10:33 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:10:33 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:10:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:10:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:10:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:10:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:10:33 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 17:10:33 DEBUG SClient4WPS:889 - WPS STATUS:30.0 -2016-05-06 17:10:33 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=30.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 17:10:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:10:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:10:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:10:43 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f] -2016-05-06 17:10:43 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:10:43 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:10:43 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:10:43 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:10:43 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:10:43 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:10:43 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 17:10:43 DEBUG SClient4WPS:889 - WPS STATUS:30.0 -2016-05-06 17:10:43 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=30.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 17:10:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-06 17:10:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-06 17:10:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:10:53 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f] -2016-05-06 17:10:53 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:10:53 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:10:53 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:10:53 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:10:53 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:10:53 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:10:53 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 17:10:53 DEBUG SClient4WPS:889 - WPS STATUS:80.0 -2016-05-06 17:10:53 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=80.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 17:10:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:10:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:11:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:11:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:11:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:11:03 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f] -2016-05-06 17:11:03 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:11:03 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:11:03 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:11:03 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:11:03 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:11:03 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:11:03 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - Process successful - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - - _______________________________________________ __ ____ ______________________________________ _______________ - - - - - - -_______________________ _____ __ _ _ _ _____ ___________________________________________________________________________ ______ ___ __ ____ ___ ___________________________________________________ -_____________________ _____ ___ __ _ _ __ _____ ___ __ _ ______________________________________________________________ _ ____ ____________________________________________________ -________________ _____ ______ _ _____ _ ____________ _____ _______________________________________________________ _______ _ ____________________________________________________ -______________________ ______ _____ __ ______________ ____ _______________________________________________ _________ __________ _ __ ___________________________________________________ -__________________ __ _ ____ ____ ___ ______ __ ____ ____ _ _ _____________________________________ _ ________ _______________ _ ________________________________________________ -__________________ __ _____ _ _ ___ ___ _ ______ _________ _ __ _ ____________________________________ __________ _____________ ______________ _______________________________ -___________________ _ ____ _ _ ___ ___ __ _____ ___ __ ___ __ _________________________________ ____________ ___________ _________ ________________________________ -____________________ ______ _ ___ ______________ ___ __ ___ _ ____ _ _____________________________________________ ________ _______ _________________________________ -_________________________ __ _ _ ______ ____ ___________ __ __ _ ______________________________________________ __________ _____ _________________________________ -________________________ _______ __ _ ___ _ ___ __ __ _ _________________________________________________ _____ _______________________________________ -___________________________ ________ __ __________ __ ______ _ __ _______________________________________ ______ ____________________________________ -____________________________ ______ _____ _____ __ _ ____ ____ _______________ ____________________________ _ _____________________________________ -_____________________________________ _____ _ ___ ______ ________ __ ___________ _____________________________ ___________________________________ -____________________________________ ____ _ _ ___________ _________ _______________________ _ ____________________________________ -___________________________________ _____ _ ________ ___________ ____________________________ ________________________________________ -________________________________ ____ _ __________ _______________ ________________________ __ ________________________________________ -_______________________________ ___ _ _____________ _ _________________________________________ ______________________________________ -_______________________________ ___ __ _____________ _____________________________________________ ______________________________________ -_____________________________ _ _ ______________ ___________________________________ __ _______ ________________________ -_____________________________ ____ _ ____________ _ ____________________________ _ _ ______ _______________________ -__________________________ _ _ _______ ___________ ____________________________ __ ____________ ____________________ -______________________ _ _ ________ _ __________ __________________________ ______ __ ______ _________________________ -_______________ ______ _________ _ _________ __________________________ __ _ ___ _________________________ -____________ _________ ____________ _____________ __________________________ ______________________ -___________ ___________ __________ ___________ __________________________ ______________________ -__________ ________________ ___ __ ________ _ __________________________ ______________ __ -__________ ______________ ______ _ __________ _ __________________________ ___ ________________ -________ ____________________ ___ _ _______ ___________________________ ___ _ ___ ____ -___________ __________________ ________ _ ________ _____________________________ _ _ _ - ___________ ____________________ _____ ___________ __________________________________ __ - _ __ __________________ __ _ ___________ ___________________________________ ___ __ - ____ _________________ ___ _____________ _____________ ____________________ ____ __ _ -___ __________ _________________ __________________ ______________ _________________ ________ __ -____________ _ _ ______________ _________________ _______________ _________________ _____ ____ -____________ _ __________ ____________ ___________________ __________________ ____________________ ____ __ ___ -____________ _ _____________ _ ____________ ____ ______________ ________________________________________ _______ _ __ -_____________ __ _______________ ___________ __ ______________ _ ___________________________________ _____ _ __ ___ _ ______ -___________ ___ ____________________ _______ __ ________________ ___________________________________________ __ _____ __ _______ ________ -________________ ___ _ ___________________ _ ______ ________________________________________________________________ _ ____ __________ _____ ________________ -____________________ _ ________________________ ___ __________________________________________________ _ ___________ __ _____ ___________________ ________________ -___________________ _________________________ _ ___ __________________________________________________ _________ _____ __________________ ________________ -_________________ ___________________________ ___ __ ___________________________________________________ ___________ ___ _ __ ________________ ________________ -________________ __________________________________ ___ _________________________________________________ __________ __________________ _________________ -____________________________________________________ __ _____________________________________________ __ ______ ______________ ___ _____________ -____________ ______________________________________ ___________________________________________ _ ___ ____________ ____________________ -_____________________________________________________ _ ____________________________________________ __ __ _ ____________ _____________________ -_______________________________________________________ __ ___________________________________________ _____ _ _ ____________ _____________________ -_______________________________________________________ ____ _____ _________________________________________________ ____ _ ___________ _______________________ -________________________________________________________ _ ______ __________________________________________________ ___ __ ____________________________________ -________________________________________________________ ______ _______________________________________________ ___ __ ________________________________________ -________________________________________________________ ____ ______ _________________________________________________ __________ ___ ____________________________________ -________________________________________________________ __ __________________________________________________________ _ ____________ __________________________________________ -________________________________________________________ _ _____________________________________________________________ ___ _____________ _____ _____________________________________ -________________________________________________________ ____ ______________________________________________________________ ___ ____ ______________ _______ ___________________________________ -________________________________________________________ _____________________________________________________________ ________ _____ ___ _ __________ ____________________________________ -________________________________________________________ _____________________________________________________________ __________ __ __ __ _ __________ _______________________________________ -_________________________________________________________ ________________________________________________________________ _______ ______ ___ ___ ___ __ ____________ ______________________________________ -_________________________________________________________ __________________________________________________________________ ________ ______ ____ ___ _______ ____________ ______________________________________ -__________________________________________________________ _______________________________________________ ___________________ _____________ ______ ____ _ _____ __________ _______________________________________ -___________________________________________________________ ___________________________________________________________________ ________ _ ____________ ______ _ __ _____ _________ _______________________________________ -___________________________________________________________ ___________________________________________________________________________ _________________________ _______ _______ _______________________________________ -____________________________________________________________ _______________________________________________________________________ _________________________ ______ ____ _ _ __________________________________________ -_______________________________________________________________ ________________________________________________________________________ ________________________ _____ ___ _______________________________________________ -________________________________________________________________ _______________________________________________________________________ ____ ___________ __________ _________________________________________________ -________________________________________________________________ _ _______________________________________________________________________ __ _ __________________________________________________________ -_________________________________________________________________ _ ___ ______ _______________________________________________________________________ ___ __________________________________________________________ -__________________________________________________________________ _ ______________ _______________________________________________________________ _____ _ ___ ___________________________________________________________ -___________________________________________________________________ __ _______________ ___________________________________________________________________ __ ____ _ ____________________________________________________________ -____________________________________________________________________ __ ________________ __________________________________________________________________ __ ____ __ _____________________________________________________________ -_____________________________________________________________________ ___ __________________________________________________________________________________ __ __ ___________ __ __ ________________________________________________________ -__________________________________________________________________________ ______________ _______________________________________________________________ ___ _________ ____ ___________________________________________________________ -______________________ ____________________________________________________ _________ ___ ____ ___________________________________________________________ __ __________ _ _____ __ _____________________________________________________________________ -___________________________________________________________________________ ______ __________ __________________________________________________________ ____ _______________ _______ __________________________________________________________________________ -_____________________________________________________________________________ _ __________ ___ _ _ _________________________________________________ ____ ________________ __________ ___ __________ ___________________________________________________________ -________________________________________________________________________________ ________________________________________________________________________ __ _ ___________________ ____________ _____________ __________________________________________________________ -_______________________________________________________________________________________ ____________________________________________________________________ ___ _____________________ _ _________________ ____________ ___________________________________________________________ -_________________________________________________________________________________________ __________________________________________________________________ _ ________________________ _ __________________ ___________ _________________________________________________________ -_____________________________________________________________________________________________ _____________ _____________________________________________________ _ ____________________________ __ ____________ _____ _ _______________________________________________________________________ -_______________________________________________________________________________________________ _________ _ _____________________________________________________ ____ ______________________ ___ __________________ ____ ______________ _ _________________________________________ __ __________ -________________________________________________________________________________________________ _______ ________________________________________________ ______________________ ___ ___________________ ______ ____________ ___ _________________________________________________________ -__________________________________________________________________________________________________ __ ______________________________________________ _______________________ ____ __ _________________ _______________________ ______________________________________________________ -_______________________________________________________________________________________________________ ______________________________________________ ________________________ _______ __________________ _______________ _______ _______________________________________________________ -_______________________________________________________________________________________________________ ___________________________________________ ____ _______ ________________________ ______________________ __ ____________ _____________________________________________________________ -_______________________________________________________________________________________________________ _____________________________________________________________ __________________________ ________________________ __ __________ _______________________________________________________________ -______________________________________________________________________________________________________ ____________________________________________________________ ___________________________ _________________________ _ _______ _________ ____________________________________________________ -____________________________________________________________________________________________________ ____________________________________________________________ _____________________________ __________________________ ______ ___ ___ ____________________________________________________ -____________________________________________________________________________________________________ _______________________________________________________ _______________________________ _________________________ _ _____ __ _ _______ ______________________________________________ -____________________________________________________________________________________________________ _____________________________________________________ ________________________________ ____________________________ ____ ___ ___________ __ ________________________________________ -____________________________________________________________________________________________________ __________________________________________________ _________________________________ _____________________________ ________ ____ _ ____________ ________ ___________________________ -____________________________________________________________________________________________________ _______________________________________________ __________________________________ _______________________________ _____________ __ _______________ ____ __ _________________________ -_____________________________________________________________________________________________________ ________________________________________________ _________________________________ _________________________________ ________________________ _________ _______________________ -______________________________________________________________________________________________________ _________________________________________________ _________________________________ __________________________________________ ___ _____________ ___ ____________ ___________________ -______________________________________________________________________________________________________ __________________________________________________ _________________________________ _______________________________________________ __ ________________________ ______________________________ -_______________________________________________________________________________________________________ ___________________________________________________ __ _____________________________ _________________________________________________________ _ _________ _____________________________________ -________________________________________________________________________________________________________ ____________________________________________________ ________ _______________________ _________________________________________________________ _____ _____________________________________ -_________________________________________________________________________________________________________ ____________________________________________________ _______ _______________________ ____________________________________________________ _ ______ ___________________________________ -__________________________________________________________________________________________________________ ___________________________________________________ _____ _______________________ ___________________________________________________ ____ ___________________________________ -_____________________________________________________________________________________________________________ ___________________________________________________ ______ _______________________ _________________________________________________ __ __________________________________ -______________________________________________________________________________________________________________ ____________________________________________________ _________ ________________________ ________________________________________________ __________________________________ -______________________________________________________________________________________________________________ ______________________________________________________ _________ ________________________ _____________________________________________ _______________________________ -______________________________________________________________________________________________________________ _______________________________________________________ ________ _________________________ _________________________________________ _______________________________ -______________________________________________________________________________________________________________ ___________________________________________________________ ________ _________________________ _________________________________________ _____________________________ -______________________________________________________________________________________________________________ ______________________________________________________________ _________ __________________________ ________________________________________ ____________________________ -______________________________________________________________________________________________________________ _______________________________________________________________ ________________________________________ _________________________________________ ___________________________ -______________________________________________________________________________________________________________ ________________________________________________________________ ________________________________________ _________________________________________ ___________________________ -_____________________________________________________________________________________________________________ __________________________________________________________________ _________________________________________ _________________________________________ ___________________________ -_____________________________________________________________________________________________________________ ___________________________________________________________________ __________________________________________ __________________________________________ ___________________________ -_____________________________________________________________________________________________________________ _____________________________________________________________________ ___________________________________________ __________________________________________ ___________________________ -_____________________________________________________________________________________________________________ ______________________________________________________________________ _____________________________________________ __________________________________________ _________ ____________________________ -_____________________________________________________________________________________________________________ ________________________________________________________________________ ________________________________________________ __________________________________________ ________________ _ _____________________________ -____________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ _________________________________________________________________ _______________________ ______ -____________________________________________________________________________________________________________ _________________________________________________________________________________________________________________________________ ___________________________________________________________________ ________________________ _____ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ ___________________________________________________________________ __________________________ ____ -___________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________ _____________________________________________________________________________________________________ __ -___________________________________________________________________________________________________________ _______________________________________________________________________________________________________________________________________ ______________________________________________________________________________________________________ ___ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ _______________________________________________________________________ ________________________ ____ -__________________________________________________________________________________________________________ _ ________________________________________________________________________________________________________________________________________ ________________________________________________________________________ _______________________ _______ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ _________________________________________________________________________ ______________________ _______ -__________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ ______________________________________________________________________________________________ _________ -__________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ _____________________________________________________________________________________________ __________ -__________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ ______________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ ________ ___________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -___________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -___________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________ ___________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_______________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_______________________________________________________________________________________________________________________ _ _________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -____________________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________ ______________________ ___________________________________ _____________________________________________ -__________________________________________________________________________________________________________________ _ _____________________________________________________________________________________________________________________________________ ______________________ ________ _____________________ _____________________________________________ -__________________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ ________________ ________ _ ______ ___ _ _______ ____ __________________________________________ -________________________________________________________________________________________________________________ _____________________________________________________________________________________________________________ _ _______________ _________ ____________________________________ -_______________________________________________________________________________________________________________ _ ___________________________________________________________________________________________________________ _ ________ ________ ___________________________________ -_________________________________________________________________________________________________________________ ______________________________________________________________________________________________________ ___ ______ ________________________________ -_________________________________________________________________________________________________________________ ______________________________________________________________________________________________ ______ _ _____ _________________________ -____________________________________________________________________________________________________________ __ ___________________________________________________________________________________________ ____ ____ _______________________ -____________________________________________________________________________________________________________ _ ___________________________________________________________________________ ___________ ____________________ -__________________________________________________________________________________________________________ _______________________________________________________ _________________ -_________________________________________________________________________________________________________ ___________________________________________________ ____________ -___________________________________________________________________________________________________________ ________________________________________________ ___________ -_________________________________________________________________________________ _______________________ ________________________________________________ _________ -______________________________________________________________________________ ______________________ ______________________________________________ __________ -_____________________________________________________________________________ __________ ___ ____________________________________________ __________ -_____________________________________________________________________________ _____ ________________________________________ ___________ -_____________________________________________________ ______________ ______ __ _________________________________________ _____________ -_____________________________________________________ _ _ ____ ______ _________________________________________ ______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - id,csquarecode,x,y,z,time,fvalue -1,5918:100,-180,-90,0,0,0.0749916 -2,5917:209,-179,-90,0,0,0.0750201 -3,5917:208,-178,-90,0,0,0.0750201 -4,5917:207,-177,-90,0,0,0.0750416 -5,5917:206,-176,-90,0,0,0.0750488 -6,5917:205,-175,-90,0,0,0.0750558 -7,5917:104,-174,-90,0,0,0.0750702 -8,5917:103,-173,-90,0,0,0.0750773 -9,5917:102,-172,-90,0,0,0.0750843 -10,5917:101,-171,-90,0,0,0.0750843 -11,5917:100,-170,-90,0,0,0.0750915 -12,5916:209,-169,-90,0,0,0.0750987 -13,5916:208,-168,-90,0,0,0.0751059 -14,5916:207,-167,-90,0,0,0.0751128 -15,5916:206,-166,-90,0,0,0.0751059 -16,5916:205,-165,-90,0,0,0.0751059 -17,5916:104,-164,-90,0,0,0.0751059 -18,5916:103,-163,-90,0,0,0.0751128 -19,5916:102,-162,-90,0,0,0.0751128 -20,5916:101,-161,-90,0,0,0.07512 -21,5916:100,-160,-90,0,0,0.0751344 -22,5915:209,-159,-90,0,0,0.0751416 -23,5915:208,-158,-90,0,0,0.0751558 -24,5915:207,-157,-90,0,0,0.0751486 -25,5915:206,-156,-90,0,0,0.0751558 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-37742,7805:134,-54,83,0,0,0.076582 -37743,7805:133,-53,83,0,0,0.076553 -37744,7805:132,-52,83,0,0,0.0765022 -37745,7805:131,-51,83,0,0,0.0765093 -37746,7805:130,-50,83,0,0,0.076553 -37747,7804:239,-49,83,0,0,0.0765967 -37748,7804:238,-48,83,0,0,0.0766038 -37749,7804:237,-47,83,0,0,0.0765384 -37750,7804:236,-46,83,0,0,0.0764513 -37751,7804:235,-45,83,0,0,0.0763281 -37752,7804:134,-44,83,0,0,0.07635 -37753,7804:133,-43,83,0,0,0.0763789 -37754,7804:132,-42,83,0,0,0.076386 -37755,7804:131,-41,83,0,0,0.0763716 -37756,7804:130,-40,83,0,0,0.0763643 -37757,7803:239,-39,83,0,0,0.0763571 -37758,7803:238,-38,83,0,0,0.0763571 -37759,7803:237,-37,83,0,0,0.0763354 -37760,7803:236,-36,83,0,0,0.0763064 -37761,7803:235,-35,83,0,0,0.0762775 -37762,7803:134,-34,83,0,0,0.0762702 -37763,7803:133,-33,83,0,0,0.0762848 -37764,7803:132,-32,83,0,0,0.0762848 -37765,7803:131,-31,83,0,0,0.0762848 -37766,7803:130,-30,83,0,0,0.0762918 -37767,7802:239,-29,83,0,0,0.0762848 -37768,7802:238,-28,83,0,0,0.0762775 -37769,7802:237,-27,83,0,0,0.0762775 -37770,7802:236,-26,83,0,0,0.0762702 -37771,7802:235,-25,83,0,0,0.0762848 -37772,7802:134,-24,83,0,0,0.0762775 -37773,7802:133,-23,83,0,0,0.0762413 -37774,7802:132,-22,83,0,0,0.0762123 -37775,7802:131,-21,83,0,0,0.0761689 -37776,7802:130,-20,83,0,0,0.0760895 -37777,7801:239,-19,83,0,0,0.0760245 -37778,7801:238,-18,83,0,0,0.0758658 -37779,7801:237,-17,83,0,0,0.0757435 -37780,7801:236,-16,83,0,0,0.075686 -37781,7801:235,-15,83,0,0,0.0757075 -37782,7801:134,-14,83,0,0,0.0757147 -37783,7801:133,-13,83,0,0,0.0755998 -37784,7801:132,-12,83,0,0,0.0754133 -37785,7801:131,-11,83,0,0,0.0753847 -37786,7801:130,-10,83,0,0,0.0753917 -37787,7800:239,-9,83,0,0,0.0753703 -37788,7800:238,-8,83,0,0,0.075313 -37789,7800:237,-7,83,0,0,0.0754275 -37790,7800:236,-6,83,0,0,0.0755926 -37791,7800:235,-5,83,0,0,0.076046 -37792,7800:134,-4,83,0,0,0.0760245 -37793,7800:133,-3,83,0,0,0.077063 -37794,7800:132,-2,83,0,0,0.0774584 -37795,7800:131,-1,83,0,0,0.0775762 -37796,1800:131,0,83,0,0,0.0777084 -37797,1800:131,1,83,0,0,0.0778634 -37798,1800:132,2,83,0,0,0.0776421 -37799,1800:133,3,83,0,0,0.0779149 -37800,1800:134,4,83,0,0,0.0781292 -37801,1800:235,5,83,0,0,0.0797805 -37802,1800:236,6,83,0,0,0.0799466 -37803,1800:237,7,83,0,0,0.0786861 -37804,1800:238,8,83,0,0,0.0762196 -37805,1800:239,9,83,0,0,0.0767785 -37806,1801:130,10,83,0,0,0.0780405 -37807,1801:131,11,83,0,0,0.0794416 -37808,1801:132,12,83,0,0,0.0802948 -37809,1801:133,13,83,0,0,0.081448 -37810,1801:134,14,83,0,0,0.0822588 -37811,1801:235,15,83,0,0,0.0829675 -37812,1801:236,16,83,0,0,0.0827254 -37813,1801:237,17,83,0,0,0.0852147 -37814,1801:238,18,83,0,0,0.0885065 -37815,1802:130,20,83,0,0,0.0895146 -37816,1802:131,21,83,0,0,0.0895146 -37817,1802:132,22,83,0,0,0.089523 -37818,1802:133,23,83,0,0,0.089523 -37819,1802:134,24,83,0,0,0.0895146 -37820,1802:235,25,83,0,0,0.0895146 -37821,1802:237,27,83,0,0,0.0894895 -37822,1802:238,28,83,0,0,0.0895062 -37823,1802:239,29,83,0,0,0.0895312 -37824,1811:237,117,83,0,0,0.089523 -37825,1811:238,118,83,0,0,0.0895062 -37826,1812:131,121,83,0,0,0.089523 -37827,1812:132,122,83,0,0,0.089523 -37828,1812:133,123,83,0,0,0.089523 -37829,1812:134,124,83,0,0,0.089523 -37830,1812:236,126,83,0,0,0.0895146 -37831,1812:237,127,83,0,0,0.0894977 -37832,1812:238,128,83,0,0,0.0885232 -37833,1813:130,130,83,0,0,0.0831004 -37834,1813:131,131,83,0,0,0.08222 -37835,1813:132,132,83,0,0,0.0818873 -37836,1813:133,133,83,0,0,0.0807971 -37837,1813:134,134,83,0,0,0.0799542 -37838,1813:235,135,83,0,0,0.0793815 -37839,1813:236,136,83,0,0,0.0776055 -37840,1813:237,137,83,0,0,0.0763208 -37841,1813:238,138,83,0,0,0.0769315 -37842,1813:239,139,83,0,0,0.080128 -37843,1814:130,140,83,0,0,0.0801509 -37844,1814:131,141,83,0,0,0.0799542 -37845,1814:132,142,83,0,0,0.0773852 -37846,1814:133,143,83,0,0,0.0765457 -37847,1814:134,144,83,0,0,0.0763281 -37848,1814:235,145,83,0,0,0.0764079 -37849,1814:236,146,83,0,0,0.0765022 -37850,1814:237,147,83,0,0,0.0766038 -37851,1814:238,148,83,0,0,0.0766111 -37852,1814:239,149,83,0,0,0.0763933 -37853,1815:130,150,83,0,0,0.0762196 -37854,1815:131,151,83,0,0,0.0763933 -37855,1815:132,152,83,0,0,0.0756932 -37856,1815:133,153,83,0,0,0.075442 -37857,1815:134,154,83,0,0,0.0753203 -37858,1815:235,155,83,0,0,0.0753561 -37859,1815:236,156,83,0,0,0.0753631 -37860,1815:237,157,83,0,0,0.0753775 -37861,1815:238,158,83,0,0,0.0753847 -37862,1815:239,159,83,0,0,0.0755781 -37863,1816:130,160,83,0,0,0.0756932 -37864,1816:131,161,83,0,0,0.0756645 -37865,1816:132,162,83,0,0,0.07565 -37866,1816:133,163,83,0,0,0.0757507 -37867,1816:134,164,83,0,0,0.0758874 -37868,1816:235,165,83,0,0,0.0759956 -37869,1816:236,166,83,0,0,0.0760606 -37870,1816:237,167,83,0,0,0.0761618 -37871,1816:238,168,83,0,0,0.0762123 -37872,1816:239,169,83,0,0,0.0762413 -37873,1817:130,170,83,0,0,0.0762848 -37874,1817:131,171,83,0,0,0.0762918 -37875,1817:132,172,83,0,0,0.0762848 -37876,1817:133,173,83,0,0,0.0762848 -37877,1817:134,174,83,0,0,0.0762848 -37878,1817:235,175,83,0,0,0.0762848 -37879,1817:236,176,83,0,0,0.0762918 -37880,1817:237,177,83,0,0,0.0762918 -37881,1817:238,178,83,0,0,0.0762848 -37882,1817:239,179,83,0,0,0.0762918 -37883,1818:130,180,83,0,0,0.0762775 -37884,7918:100,-180,90,0,0,0.0749916 -37885,7917:209,-179,90,0,0,0.0750201 -37886,7917:208,-178,90,0,0,0.0750201 -37887,7917:207,-177,90,0,0,0.0750416 -37888,7917:206,-176,90,0,0,0.0750488 -37889,7917:205,-175,90,0,0,0.0750558 -37890,7917:104,-174,90,0,0,0.0750702 -37891,7917:103,-173,90,0,0,0.0750773 -37892,7917:102,-172,90,0,0,0.0750843 -37893,7917:101,-171,90,0,0,0.0750843 -37894,7917:100,-170,90,0,0,0.0750915 -37895,7916:209,-169,90,0,0,0.0750987 -37896,7916:208,-168,90,0,0,0.0751059 -37897,7916:207,-167,90,0,0,0.0751128 -37898,7916:206,-166,90,0,0,0.0751059 -37899,7916:205,-165,90,0,0,0.0751059 -37900,7916:104,-164,90,0,0,0.0751059 -37901,7916:103,-163,90,0,0,0.0751128 -37902,7916:102,-162,90,0,0,0.0751128 -37903,7916:101,-161,90,0,0,0.07512 -37904,7916:100,-160,90,0,0,0.0751344 -37905,7915:209,-159,90,0,0,0.0751416 -37906,7915:208,-158,90,0,0,0.0751558 -37907,7915:207,-157,90,0,0,0.0751486 -37908,7915:206,-156,90,0,0,0.0751558 -37909,7915:205,-155,90,0,0,0.075163 -37910,7915:104,-154,90,0,0,0.0751486 -37911,7915:103,-153,90,0,0,0.075163 -37912,7915:102,-152,90,0,0,0.0751558 -37913,7915:101,-151,90,0,0,0.0751416 -37914,7915:100,-150,90,0,0,0.0751416 -37915,7914:209,-149,90,0,0,0.0751344 -37916,7914:208,-148,90,0,0,0.0751344 -37917,7914:207,-147,90,0,0,0.0751272 -37918,7914:206,-146,90,0,0,0.07512 -37919,7914:205,-145,90,0,0,0.07512 -37920,7914:104,-144,90,0,0,0.0751128 -37921,7914:103,-143,90,0,0,0.07512 -37922,7914:102,-142,90,0,0,0.0751128 -37923,7914:101,-141,90,0,0,0.0751128 -37924,7914:100,-140,90,0,0,0.07512 -37925,7913:209,-139,90,0,0,0.07512 -37926,7913:208,-138,90,0,0,0.0751272 -37927,7913:207,-137,90,0,0,0.07527 -37928,7913:206,-136,90,0,0,0.0758155 -37929,7913:205,-135,90,0,0,0.0776421 -37930,7913:104,-134,90,0,0,0.0779001 -37931,7911:100,-110,90,0,0,0.0832649 -37932,7910:209,-109,90,0,0,0.0880188 -37933,7910:206,-106,90,0,0,0.0759162 -37934,7910:205,-105,90,0,0,0.0753775 -37935,7910:104,-104,90,0,0,0.0768514 -37936,7910:103,-103,90,0,0,0.0810109 -37937,7906:101,-61,90,0,0,0.0753489 -37938,7906:100,-60,90,0,0,0.075163 -37939,7905:209,-59,90,0,0,0.0750201 -37940,7905:208,-58,90,0,0,0.074949 -37941,7905:207,-57,90,0,0,0.0749346 -37942,7905:206,-56,90,0,0,0.0749275 -37943,7905:205,-55,90,0,0,0.0749346 -37944,7905:104,-54,90,0,0,0.0749346 -37945,7905:103,-53,90,0,0,0.0749418 -37946,7905:102,-52,90,0,0,0.0749562 -37947,7905:101,-51,90,0,0,0.0749631 -37948,7905:100,-50,90,0,0,0.0749631 -37949,7904:209,-49,90,0,0,0.0749631 -37950,7904:208,-48,90,0,0,0.074949 -37951,7904:207,-47,90,0,0,0.0749703 -37952,7904:206,-46,90,0,0,0.0749988 -37953,7904:205,-45,90,0,0,0.0750273 -37954,7904:104,-44,90,0,0,0.0750201 -37955,7904:103,-43,90,0,0,0.0750201 -37956,7904:102,-42,90,0,0,0.0750131 -37957,7904:101,-41,90,0,0,0.0750201 -37958,7904:100,-40,90,0,0,0.0750345 -37959,7903:209,-39,90,0,0,0.0750345 -37960,7903:208,-38,90,0,0,0.0750345 -37961,7903:207,-37,90,0,0,0.0750345 -37962,7903:206,-36,90,0,0,0.0750345 -37963,7903:205,-35,90,0,0,0.0750416 -37964,7903:104,-34,90,0,0,0.0750345 -37965,7903:103,-33,90,0,0,0.0750345 -37966,7903:102,-32,90,0,0,0.0750416 -37967,7903:101,-31,90,0,0,0.0750488 -37968,7903:100,-30,90,0,0,0.0750488 -37969,7902:209,-29,90,0,0,0.0750488 -37970,7902:208,-28,90,0,0,0.0750345 -37971,7902:207,-27,90,0,0,0.0750201 -37972,7902:206,-26,90,0,0,0.0761183 -37973,7902:205,-25,90,0,0,0.0756715 -37974,7902:104,-24,90,0,0,0.0789397 -37975,1916:206,166,90,0,0,0.0752487 -37976,1916:207,167,90,0,0,0.075063 -37977,1916:208,168,90,0,0,0.0749846 -37978,1916:209,169,90,0,0,0.074899 -37979,1917:100,170,90,0,0,0.074892 -37980,1917:101,171,90,0,0,0.0748777 -37981,1917:102,172,90,0,0,0.0807894 -37982,1917:103,173,90,0,0,0.0878209 -37983,1917:104,174,90,0,0,0.087558 -37984,1917:205,175,90,0,0,0.0873776 -37985,1917:206,176,90,0,0,0.0863183 -37986,1917:207,177,90,0,0,0.0752844 -37987,1917:208,178,90,0,0,0.0748849 -37988,1917:209,179,90,0,0,0.074949 -37989,1918:100,180,90,0,0,0.0749916 - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRVl6d09hWEYrd05HbWJQNStIS0N6Yz0 - The warnings from the underlying MaxEnt model - text/csv - - - http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRmEyV3I5bDJEQnFHbWJQNStIS0N6Yz0 - ASCII Maps of the environmental layers for checking features aligments - text/csv - - - http://data-d.d4science.org/NXNBN09EaVF1UFp1OUtmNGlWNFVMR05OR3FlNGpPb0NHbWJQNStIS0N6Yz0 - World Thumbnail - image/png - - - http://data-d.d4science.org/SzZaRHBaSmhwSmR1OUtmNGlWNFVMTXVqSFdROTFEUjZHbWJQNStIS0N6Yz0 - ROC Curve - image/png - - - http://data-d.d4science.org/TGJsd3BFbmhJWGx1OUtmNGlWNFVMTWZmVStUUlU0WjlHbWJQNStIS0N6Yz0 - Omission-Commission Curve - image/png - - - http://data-d.d4science.org/M1ZFbElJaGJOYjl1OUtmNGlWNFVMQzNQakl0OXc5b0ZHbWJQNStIS0N6Yz0 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - text/csv - - - - - - - - -2016-05-06 17:11:04 DEBUG SClient4WPS:875 - WPS SUCCESS -2016-05-06 17:11:04 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-06 17:11:04 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f] -2016-05-06 17:11:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:11:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:11:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:11:04 DEBUG SClient4WPS:436 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:11:04 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=b56655c9-fadc-4a7d-ba52-1cf2e0d1253f -2016-05-06 17:11:04 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:11:04 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:11:04 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:11:04 DEBUG SClient4WPS:447 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - Process successful - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - - _______________________________________________ __ ____ ______________________________________ _______________ - - - - - - -_______________________ _____ __ _ _ _ _____ ___________________________________________________________________________ ______ ___ __ ____ ___ ___________________________________________________ -_____________________ _____ ___ __ _ _ __ _____ ___ __ _ ______________________________________________________________ _ ____ ____________________________________________________ -________________ _____ ______ _ _____ _ ____________ _____ _______________________________________________________ _______ _ ____________________________________________________ -______________________ ______ _____ __ ______________ ____ _______________________________________________ _________ __________ _ __ ___________________________________________________ -__________________ __ _ ____ ____ ___ ______ __ ____ ____ _ _ _____________________________________ _ ________ _______________ _ ________________________________________________ -__________________ __ _____ _ _ ___ ___ _ ______ _________ _ __ _ ____________________________________ __________ _____________ ______________ _______________________________ -___________________ _ ____ _ _ ___ ___ __ _____ ___ __ ___ __ _________________________________ ____________ ___________ _________ ________________________________ -____________________ ______ _ ___ ______________ ___ __ ___ _ ____ _ _____________________________________________ ________ _______ _________________________________ -_________________________ __ _ _ ______ ____ ___________ __ __ _ ______________________________________________ __________ _____ _________________________________ -________________________ _______ __ _ ___ _ ___ __ __ _ _________________________________________________ _____ _______________________________________ -___________________________ ________ __ __________ __ ______ _ __ _______________________________________ ______ ____________________________________ -____________________________ ______ _____ _____ __ _ ____ ____ _______________ ____________________________ _ _____________________________________ -_____________________________________ _____ _ ___ ______ ________ __ ___________ _____________________________ ___________________________________ -____________________________________ ____ _ _ ___________ _________ _______________________ _ ____________________________________ -___________________________________ _____ _ ________ ___________ ____________________________ ________________________________________ -________________________________ ____ _ __________ _______________ ________________________ __ ________________________________________ -_______________________________ ___ _ _____________ _ _________________________________________ ______________________________________ -_______________________________ ___ __ _____________ _____________________________________________ ______________________________________ -_____________________________ _ _ ______________ ___________________________________ __ _______ ________________________ -_____________________________ ____ _ ____________ _ ____________________________ _ _ ______ _______________________ -__________________________ _ _ _______ ___________ ____________________________ __ ____________ ____________________ -______________________ _ _ ________ _ __________ __________________________ ______ __ ______ _________________________ -_______________ ______ _________ _ _________ __________________________ __ _ ___ _________________________ -____________ _________ ____________ _____________ __________________________ ______________________ -___________ ___________ __________ ___________ __________________________ ______________________ -__________ ________________ ___ __ ________ _ __________________________ ______________ __ -__________ ______________ ______ _ __________ _ __________________________ ___ ________________ -________ ____________________ ___ _ _______ ___________________________ ___ _ ___ ____ -___________ __________________ ________ _ ________ _____________________________ _ _ _ - ___________ ____________________ _____ ___________ __________________________________ __ - _ __ __________________ __ _ ___________ ___________________________________ ___ __ - ____ _________________ ___ _____________ _____________ ____________________ ____ __ _ -___ __________ _________________ __________________ ______________ _________________ ________ __ -____________ _ _ ______________ _________________ _______________ _________________ _____ ____ -____________ _ __________ ____________ ___________________ __________________ ____________________ ____ __ ___ -____________ _ _____________ _ ____________ ____ ______________ ________________________________________ _______ _ __ -_____________ __ _______________ ___________ __ ______________ _ ___________________________________ _____ _ __ ___ _ ______ -___________ ___ ____________________ _______ __ ________________ ___________________________________________ __ _____ __ _______ ________ -________________ ___ _ ___________________ _ ______ ________________________________________________________________ _ ____ __________ _____ ________________ -____________________ _ ________________________ ___ __________________________________________________ _ ___________ __ _____ ___________________ ________________ -___________________ _________________________ _ ___ __________________________________________________ _________ _____ __________________ ________________ -_________________ ___________________________ ___ __ ___________________________________________________ ___________ ___ _ __ ________________ ________________ -________________ __________________________________ ___ _________________________________________________ __________ __________________ _________________ -____________________________________________________ __ _____________________________________________ __ ______ ______________ ___ _____________ -____________ ______________________________________ ___________________________________________ _ ___ ____________ ____________________ -_____________________________________________________ _ ____________________________________________ __ __ _ ____________ _____________________ -_______________________________________________________ __ ___________________________________________ _____ _ _ ____________ _____________________ -_______________________________________________________ ____ _____ _________________________________________________ ____ _ ___________ _______________________ -________________________________________________________ _ ______ __________________________________________________ ___ __ ____________________________________ -________________________________________________________ ______ _______________________________________________ ___ __ ________________________________________ -________________________________________________________ ____ ______ _________________________________________________ __________ ___ ____________________________________ -________________________________________________________ __ __________________________________________________________ _ ____________ __________________________________________ -________________________________________________________ _ _____________________________________________________________ ___ _____________ _____ _____________________________________ -________________________________________________________ ____ ______________________________________________________________ ___ ____ ______________ _______ ___________________________________ -________________________________________________________ _____________________________________________________________ ________ _____ ___ _ __________ ____________________________________ -________________________________________________________ _____________________________________________________________ __________ __ __ __ _ __________ _______________________________________ -_________________________________________________________ ________________________________________________________________ _______ ______ ___ ___ ___ __ ____________ ______________________________________ -_________________________________________________________ __________________________________________________________________ ________ ______ ____ ___ _______ ____________ ______________________________________ -__________________________________________________________ _______________________________________________ ___________________ _____________ ______ ____ _ _____ __________ _______________________________________ -___________________________________________________________ ___________________________________________________________________ ________ _ ____________ ______ _ __ _____ _________ _______________________________________ -___________________________________________________________ ___________________________________________________________________________ _________________________ _______ _______ _______________________________________ -____________________________________________________________ _______________________________________________________________________ _________________________ ______ ____ _ _ __________________________________________ -_______________________________________________________________ ________________________________________________________________________ ________________________ _____ ___ _______________________________________________ -________________________________________________________________ _______________________________________________________________________ ____ ___________ __________ _________________________________________________ -________________________________________________________________ _ _______________________________________________________________________ __ _ __________________________________________________________ -_________________________________________________________________ _ ___ ______ _______________________________________________________________________ ___ __________________________________________________________ -__________________________________________________________________ _ ______________ _______________________________________________________________ _____ _ ___ ___________________________________________________________ -___________________________________________________________________ __ _______________ ___________________________________________________________________ __ ____ _ ____________________________________________________________ -____________________________________________________________________ __ ________________ __________________________________________________________________ __ ____ __ _____________________________________________________________ -_____________________________________________________________________ ___ __________________________________________________________________________________ __ __ ___________ __ __ ________________________________________________________ -__________________________________________________________________________ ______________ _______________________________________________________________ ___ _________ ____ ___________________________________________________________ -______________________ ____________________________________________________ _________ ___ ____ ___________________________________________________________ __ __________ _ _____ __ _____________________________________________________________________ -___________________________________________________________________________ ______ __________ __________________________________________________________ ____ _______________ _______ __________________________________________________________________________ -_____________________________________________________________________________ _ __________ ___ _ _ _________________________________________________ ____ ________________ __________ ___ __________ ___________________________________________________________ -________________________________________________________________________________ ________________________________________________________________________ __ _ ___________________ ____________ _____________ __________________________________________________________ -_______________________________________________________________________________________ ____________________________________________________________________ ___ _____________________ _ _________________ ____________ ___________________________________________________________ -_________________________________________________________________________________________ __________________________________________________________________ _ ________________________ _ __________________ ___________ _________________________________________________________ -_____________________________________________________________________________________________ _____________ _____________________________________________________ _ ____________________________ __ ____________ _____ _ _______________________________________________________________________ -_______________________________________________________________________________________________ _________ _ _____________________________________________________ ____ ______________________ ___ __________________ ____ ______________ _ _________________________________________ __ __________ -________________________________________________________________________________________________ _______ ________________________________________________ ______________________ ___ ___________________ ______ ____________ ___ _________________________________________________________ -__________________________________________________________________________________________________ __ ______________________________________________ _______________________ ____ __ _________________ _______________________ ______________________________________________________ -_______________________________________________________________________________________________________ ______________________________________________ ________________________ _______ __________________ _______________ _______ _______________________________________________________ -_______________________________________________________________________________________________________ ___________________________________________ ____ _______ ________________________ ______________________ __ ____________ _____________________________________________________________ -_______________________________________________________________________________________________________ _____________________________________________________________ __________________________ ________________________ __ __________ _______________________________________________________________ -______________________________________________________________________________________________________ ____________________________________________________________ ___________________________ _________________________ _ _______ _________ ____________________________________________________ -____________________________________________________________________________________________________ ____________________________________________________________ _____________________________ __________________________ ______ ___ ___ ____________________________________________________ -____________________________________________________________________________________________________ _______________________________________________________ _______________________________ _________________________ _ _____ __ _ _______ ______________________________________________ -____________________________________________________________________________________________________ _____________________________________________________ ________________________________ ____________________________ ____ ___ ___________ __ ________________________________________ -____________________________________________________________________________________________________ __________________________________________________ _________________________________ _____________________________ ________ ____ _ ____________ ________ ___________________________ -____________________________________________________________________________________________________ _______________________________________________ __________________________________ _______________________________ _____________ __ _______________ ____ __ _________________________ -_____________________________________________________________________________________________________ ________________________________________________ _________________________________ _________________________________ ________________________ _________ _______________________ -______________________________________________________________________________________________________ _________________________________________________ _________________________________ __________________________________________ ___ _____________ ___ ____________ ___________________ -______________________________________________________________________________________________________ __________________________________________________ _________________________________ _______________________________________________ __ ________________________ ______________________________ -_______________________________________________________________________________________________________ ___________________________________________________ __ _____________________________ _________________________________________________________ _ _________ _____________________________________ -________________________________________________________________________________________________________ ____________________________________________________ ________ _______________________ _________________________________________________________ _____ _____________________________________ -_________________________________________________________________________________________________________ ____________________________________________________ _______ _______________________ ____________________________________________________ _ ______ ___________________________________ -__________________________________________________________________________________________________________ ___________________________________________________ _____ _______________________ ___________________________________________________ ____ ___________________________________ -_____________________________________________________________________________________________________________ ___________________________________________________ ______ _______________________ _________________________________________________ __ __________________________________ -______________________________________________________________________________________________________________ ____________________________________________________ _________ ________________________ ________________________________________________ __________________________________ -______________________________________________________________________________________________________________ ______________________________________________________ _________ ________________________ _____________________________________________ _______________________________ -______________________________________________________________________________________________________________ _______________________________________________________ ________ _________________________ _________________________________________ _______________________________ -______________________________________________________________________________________________________________ ___________________________________________________________ ________ _________________________ _________________________________________ _____________________________ -______________________________________________________________________________________________________________ ______________________________________________________________ _________ __________________________ ________________________________________ ____________________________ -______________________________________________________________________________________________________________ _______________________________________________________________ ________________________________________ _________________________________________ ___________________________ -______________________________________________________________________________________________________________ ________________________________________________________________ ________________________________________ _________________________________________ ___________________________ -_____________________________________________________________________________________________________________ __________________________________________________________________ _________________________________________ _________________________________________ ___________________________ -_____________________________________________________________________________________________________________ ___________________________________________________________________ __________________________________________ __________________________________________ ___________________________ -_____________________________________________________________________________________________________________ _____________________________________________________________________ ___________________________________________ __________________________________________ ___________________________ -_____________________________________________________________________________________________________________ ______________________________________________________________________ _____________________________________________ __________________________________________ _________ ____________________________ -_____________________________________________________________________________________________________________ ________________________________________________________________________ ________________________________________________ __________________________________________ ________________ _ _____________________________ -____________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ _________________________________________________________________ _______________________ ______ -____________________________________________________________________________________________________________ _________________________________________________________________________________________________________________________________ ___________________________________________________________________ ________________________ _____ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ ___________________________________________________________________ __________________________ ____ -___________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________ _____________________________________________________________________________________________________ __ -___________________________________________________________________________________________________________ _______________________________________________________________________________________________________________________________________ ______________________________________________________________________________________________________ ___ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ _______________________________________________________________________ ________________________ ____ -__________________________________________________________________________________________________________ _ ________________________________________________________________________________________________________________________________________ ________________________________________________________________________ _______________________ _______ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ _________________________________________________________________________ ______________________ _______ -__________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ ______________________________________________________________________________________________ _________ -__________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ _____________________________________________________________________________________________ __________ -__________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ ______________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ ________ ___________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -___________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -___________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________ ___________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_______________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_______________________________________________________________________________________________________________________ _ _________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -____________________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________ ______________________ ___________________________________ _____________________________________________ -__________________________________________________________________________________________________________________ _ _____________________________________________________________________________________________________________________________________ ______________________ ________ _____________________ _____________________________________________ -__________________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ ________________ ________ _ ______ ___ _ _______ ____ __________________________________________ -________________________________________________________________________________________________________________ _____________________________________________________________________________________________________________ _ _______________ _________ ____________________________________ -_______________________________________________________________________________________________________________ _ ___________________________________________________________________________________________________________ _ ________ ________ ___________________________________ -_________________________________________________________________________________________________________________ ______________________________________________________________________________________________________ ___ ______ ________________________________ -_________________________________________________________________________________________________________________ ______________________________________________________________________________________________ ______ _ _____ _________________________ -____________________________________________________________________________________________________________ __ ___________________________________________________________________________________________ ____ ____ _______________________ -____________________________________________________________________________________________________________ _ ___________________________________________________________________________ ___________ ____________________ -__________________________________________________________________________________________________________ _______________________________________________________ _________________ -_________________________________________________________________________________________________________ ___________________________________________________ ____________ -___________________________________________________________________________________________________________ ________________________________________________ ___________ -_________________________________________________________________________________ _______________________ ________________________________________________ _________ -______________________________________________________________________________ ______________________ ______________________________________________ __________ -_____________________________________________________________________________ __________ ___ ____________________________________________ __________ -_____________________________________________________________________________ _____ ________________________________________ ___________ -_____________________________________________________ ______________ ______ __ _________________________________________ _____________ -_____________________________________________________ _ _ ____ ______ _________________________________________ ______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - id,csquarecode,x,y,z,time,fvalue -1,5918:100,-180,-90,0,0,0.0749916 -2,5917:209,-179,-90,0,0,0.0750201 -3,5917:208,-178,-90,0,0,0.0750201 -4,5917:207,-177,-90,0,0,0.0750416 -5,5917:206,-176,-90,0,0,0.0750488 -6,5917:205,-175,-90,0,0,0.0750558 -7,5917:104,-174,-90,0,0,0.0750702 -8,5917:103,-173,-90,0,0,0.0750773 -9,5917:102,-172,-90,0,0,0.0750843 -10,5917:101,-171,-90,0,0,0.0750843 -11,5917:100,-170,-90,0,0,0.0750915 -12,5916:209,-169,-90,0,0,0.0750987 -13,5916:208,-168,-90,0,0,0.0751059 -14,5916:207,-167,-90,0,0,0.0751128 -15,5916:206,-166,-90,0,0,0.0751059 -16,5916:205,-165,-90,0,0,0.0751059 -17,5916:104,-164,-90,0,0,0.0751059 -18,5916:103,-163,-90,0,0,0.0751128 -19,5916:102,-162,-90,0,0,0.0751128 -20,5916:101,-161,-90,0,0,0.07512 -21,5916:100,-160,-90,0,0,0.0751344 -22,5915:209,-159,-90,0,0,0.0751416 -23,5915:208,-158,-90,0,0,0.0751558 -24,5915:207,-157,-90,0,0,0.0751486 -25,5915:206,-156,-90,0,0,0.0751558 -26,5915:205,-155,-90,0,0,0.075163 -27,5915:104,-154,-90,0,0,0.0751486 -28,5915:103,-153,-90,0,0,0.075163 -29,5915:102,-152,-90,0,0,0.0751558 -30,5915:101,-151,-90,0,0,0.0751416 -31,5915:100,-150,-90,0,0,0.0751416 -32,5914:209,-149,-90,0,0,0.0751344 -33,5914:208,-148,-90,0,0,0.0751344 -34,5914:207,-147,-90,0,0,0.0751272 -35,5914:206,-146,-90,0,0,0.07512 -36,5914:205,-145,-90,0,0,0.07512 -37,5914:104,-144,-90,0,0,0.0751128 -38,5914:103,-143,-90,0,0,0.07512 -39,5914:102,-142,-90,0,0,0.0751128 -40,5914:101,-141,-90,0,0,0.0751128 -41,5914:100,-140,-90,0,0,0.07512 -42,5913:209,-139,-90,0,0,0.07512 -43,5913:208,-138,-90,0,0,0.0751272 -44,5913:207,-137,-90,0,0,0.07527 -45,5913:206,-136,-90,0,0,0.0758155 -46,5913:205,-135,-90,0,0,0.0776421 -47,5913:104,-134,-90,0,0,0.0779001 -48,5911:100,-110,-90,0,0,0.0832649 -49,5910:209,-109,-90,0,0,0.0880188 -50,5910:206,-106,-90,0,0,0.0759162 -51,5910:205,-105,-90,0,0,0.0753775 -52,5910:104,-104,-90,0,0,0.0768514 -53,5910:103,-103,-90,0,0,0.0810109 -54,5906:101,-61,-90,0,0,0.0753489 -55,5906:100,-60,-90,0,0,0.075163 -56,5905:209,-59,-90,0,0,0.0750201 -57,5905:208,-58,-90,0,0,0.074949 -58,5905:207,-57,-90,0,0,0.0749346 -59,5905:206,-56,-90,0,0,0.0749275 -60,5905:205,-55,-90,0,0,0.0749346 -61,5905:104,-54,-90,0,0,0.0749346 -62,5905:103,-53,-90,0,0,0.0749418 -63,5905:102,-52,-90,0,0,0.0749562 -64,5905:101,-51,-90,0,0,0.0749631 -65,5905:100,-50,-90,0,0,0.0749631 -66,5904:209,-49,-90,0,0,0.0749631 -67,5904:208,-48,-90,0,0,0.074949 -68,5904:207,-47,-90,0,0,0.0749703 -69,5904:206,-46,-90,0,0,0.0749988 -70,5904:205,-45,-90,0,0,0.0750273 -71,5904:104,-44,-90,0,0,0.0750201 -72,5904:103,-43,-90,0,0,0.0750201 -73,5904:102,-42,-90,0,0,0.0750131 -74,5904:101,-41,-90,0,0,0.0750201 -75,5904:100,-40,-90,0,0,0.0750345 -76,5903:209,-39,-90,0,0,0.0750345 -77,5903:208,-38,-90,0,0,0.0750345 -78,5903:207,-37,-90,0,0,0.0750345 -79,5903:206,-36,-90,0,0,0.0750345 -80,5903:205,-35,-90,0,0,0.0750416 -81,5903:104,-34,-90,0,0,0.0750345 -82,5903:103,-33,-90,0,0,0.0750345 -83,5903:102,-32,-90,0,0,0.0750416 -84,5903:101,-31,-90,0,0,0.0750488 -85,5903:100,-30,-90,0,0,0.0750488 -86,5902:209,-29,-90,0,0,0.0750488 -87,5902:208,-28,-90,0,0,0.0750345 -88,5902:207,-27,-90,0,0,0.0750201 -89,5902:206,-26,-90,0,0,0.0761183 -90,5902:205,-25,-90,0,0,0.0756715 -91,5902:104,-24,-90,0,0,0.0789397 -92,3916:206,166,-90,0,0,0.0752487 -93,3916:207,167,-90,0,0,0.075063 -94,3916:208,168,-90,0,0,0.0749846 -95,3916:209,169,-90,0,0,0.074899 -96,3917:100,170,-90,0,0,0.074892 -97,3917:101,171,-90,0,0,0.0748777 -98,3917:102,172,-90,0,0,0.0807894 -99,3917:103,173,-90,0,0,0.0878209 -100,3917:104,174,-90,0,0,0.087558 -101,3917:205,175,-90,0,0,0.0873776 -102,3917:206,176,-90,0,0,0.0863183 -103,3917:207,177,-90,0,0,0.0752844 -104,3917:208,178,-90,0,0,0.0748849 -105,3917:209,179,-90,0,0,0.074949 -106,3918:100,180,-90,0,0,0.0749916 -107,5818:390,-180,-89,0,0,0.0749916 -108,5817:499,-179,-89,0,0,0.0750201 -109,5817:498,-178,-89,0,0,0.0750201 -110,5817:497,-177,-89,0,0,0.0750416 -111,5817:496,-176,-89,0,0,0.0750488 -112,5817:495,-175,-89,0,0,0.0750558 -113,5817:394,-174,-89,0,0,0.0750702 -114,5817:393,-173,-89,0,0,0.0750773 -115,5817:392,-172,-89,0,0,0.0750843 -116,5817:391,-171,-89,0,0,0.0750843 -117,5817:390,-170,-89,0,0,0.0750915 -118,5816:499,-169,-89,0,0,0.0750987 -119,5816:498,-168,-89,0,0,0.0751059 -120,5816:497,-167,-89,0,0,0.0751128 -121,5816:496,-166,-89,0,0,0.0751059 -122,5816:495,-165,-89,0,0,0.0751059 -123,5816:394,-164,-89,0,0,0.0751059 -124,5816:393,-163,-89,0,0,0.0751128 -125,5816:392,-162,-89,0,0,0.0751128 -126,5816:391,-161,-89,0,0,0.07512 -127,5816:390,-160,-89,0,0,0.0751344 -128,5815:499,-159,-89,0,0,0.0751416 -129,5815:498,-158,-89,0,0,0.0751558 -130,5815:497,-157,-89,0,0,0.0751486 -131,5815:496,-156,-89,0,0,0.0751558 -132,5815:495,-155,-89,0,0,0.075163 -133,5815:394,-154,-89,0,0,0.0751486 -134,5815:393,-153,-89,0,0,0.075163 -135,5815:392,-152,-89,0,0,0.0751558 -136,5815:391,-151,-89,0,0,0.0751416 -137,5815:390,-150,-89,0,0,0.0751416 -138,5814:499,-149,-89,0,0,0.0751344 -139,5814:498,-148,-89,0,0,0.0751344 -140,5814:497,-147,-89,0,0,0.0751272 -141,5814:496,-146,-89,0,0,0.07512 -142,5814:495,-145,-89,0,0,0.07512 -143,5814:394,-144,-89,0,0,0.0751128 -144,5814:393,-143,-89,0,0,0.07512 -145,5814:392,-142,-89,0,0,0.0751128 -146,5814:391,-141,-89,0,0,0.0751128 -147,5814:390,-140,-89,0,0,0.07512 -148,5813:499,-139,-89,0,0,0.07512 -149,5813:498,-138,-89,0,0,0.0751272 -150,5813:497,-137,-89,0,0,0.07527 -151,5813:496,-136,-89,0,0,0.0758155 -152,5813:495,-135,-89,0,0,0.0776421 -153,5813:394,-134,-89,0,0,0.0779001 -154,5811:390,-110,-89,0,0,0.0832649 -155,5810:499,-109,-89,0,0,0.0880188 -156,5810:496,-106,-89,0,0,0.0759162 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-37796,1800:131,0,83,0,0,0.0777084 -37797,1800:131,1,83,0,0,0.0778634 -37798,1800:132,2,83,0,0,0.0776421 -37799,1800:133,3,83,0,0,0.0779149 -37800,1800:134,4,83,0,0,0.0781292 -37801,1800:235,5,83,0,0,0.0797805 -37802,1800:236,6,83,0,0,0.0799466 -37803,1800:237,7,83,0,0,0.0786861 -37804,1800:238,8,83,0,0,0.0762196 -37805,1800:239,9,83,0,0,0.0767785 -37806,1801:130,10,83,0,0,0.0780405 -37807,1801:131,11,83,0,0,0.0794416 -37808,1801:132,12,83,0,0,0.0802948 -37809,1801:133,13,83,0,0,0.081448 -37810,1801:134,14,83,0,0,0.0822588 -37811,1801:235,15,83,0,0,0.0829675 -37812,1801:236,16,83,0,0,0.0827254 -37813,1801:237,17,83,0,0,0.0852147 -37814,1801:238,18,83,0,0,0.0885065 -37815,1802:130,20,83,0,0,0.0895146 -37816,1802:131,21,83,0,0,0.0895146 -37817,1802:132,22,83,0,0,0.089523 -37818,1802:133,23,83,0,0,0.089523 -37819,1802:134,24,83,0,0,0.0895146 -37820,1802:235,25,83,0,0,0.0895146 -37821,1802:237,27,83,0,0,0.0894895 -37822,1802:238,28,83,0,0,0.0895062 -37823,1802:239,29,83,0,0,0.0895312 -37824,1811:237,117,83,0,0,0.089523 -37825,1811:238,118,83,0,0,0.0895062 -37826,1812:131,121,83,0,0,0.089523 -37827,1812:132,122,83,0,0,0.089523 -37828,1812:133,123,83,0,0,0.089523 -37829,1812:134,124,83,0,0,0.089523 -37830,1812:236,126,83,0,0,0.0895146 -37831,1812:237,127,83,0,0,0.0894977 -37832,1812:238,128,83,0,0,0.0885232 -37833,1813:130,130,83,0,0,0.0831004 -37834,1813:131,131,83,0,0,0.08222 -37835,1813:132,132,83,0,0,0.0818873 -37836,1813:133,133,83,0,0,0.0807971 -37837,1813:134,134,83,0,0,0.0799542 -37838,1813:235,135,83,0,0,0.0793815 -37839,1813:236,136,83,0,0,0.0776055 -37840,1813:237,137,83,0,0,0.0763208 -37841,1813:238,138,83,0,0,0.0769315 -37842,1813:239,139,83,0,0,0.080128 -37843,1814:130,140,83,0,0,0.0801509 -37844,1814:131,141,83,0,0,0.0799542 -37845,1814:132,142,83,0,0,0.0773852 -37846,1814:133,143,83,0,0,0.0765457 -37847,1814:134,144,83,0,0,0.0763281 -37848,1814:235,145,83,0,0,0.0764079 -37849,1814:236,146,83,0,0,0.0765022 -37850,1814:237,147,83,0,0,0.0766038 -37851,1814:238,148,83,0,0,0.0766111 -37852,1814:239,149,83,0,0,0.0763933 -37853,1815:130,150,83,0,0,0.0762196 -37854,1815:131,151,83,0,0,0.0763933 -37855,1815:132,152,83,0,0,0.0756932 -37856,1815:133,153,83,0,0,0.075442 -37857,1815:134,154,83,0,0,0.0753203 -37858,1815:235,155,83,0,0,0.0753561 -37859,1815:236,156,83,0,0,0.0753631 -37860,1815:237,157,83,0,0,0.0753775 -37861,1815:238,158,83,0,0,0.0753847 -37862,1815:239,159,83,0,0,0.0755781 -37863,1816:130,160,83,0,0,0.0756932 -37864,1816:131,161,83,0,0,0.0756645 -37865,1816:132,162,83,0,0,0.07565 -37866,1816:133,163,83,0,0,0.0757507 -37867,1816:134,164,83,0,0,0.0758874 -37868,1816:235,165,83,0,0,0.0759956 -37869,1816:236,166,83,0,0,0.0760606 -37870,1816:237,167,83,0,0,0.0761618 -37871,1816:238,168,83,0,0,0.0762123 -37872,1816:239,169,83,0,0,0.0762413 -37873,1817:130,170,83,0,0,0.0762848 -37874,1817:131,171,83,0,0,0.0762918 -37875,1817:132,172,83,0,0,0.0762848 -37876,1817:133,173,83,0,0,0.0762848 -37877,1817:134,174,83,0,0,0.0762848 -37878,1817:235,175,83,0,0,0.0762848 -37879,1817:236,176,83,0,0,0.0762918 -37880,1817:237,177,83,0,0,0.0762918 -37881,1817:238,178,83,0,0,0.0762848 -37882,1817:239,179,83,0,0,0.0762918 -37883,1818:130,180,83,0,0,0.0762775 -37884,7918:100,-180,90,0,0,0.0749916 -37885,7917:209,-179,90,0,0,0.0750201 -37886,7917:208,-178,90,0,0,0.0750201 -37887,7917:207,-177,90,0,0,0.0750416 -37888,7917:206,-176,90,0,0,0.0750488 -37889,7917:205,-175,90,0,0,0.0750558 -37890,7917:104,-174,90,0,0,0.0750702 -37891,7917:103,-173,90,0,0,0.0750773 -37892,7917:102,-172,90,0,0,0.0750843 -37893,7917:101,-171,90,0,0,0.0750843 -37894,7917:100,-170,90,0,0,0.0750915 -37895,7916:209,-169,90,0,0,0.0750987 -37896,7916:208,-168,90,0,0,0.0751059 -37897,7916:207,-167,90,0,0,0.0751128 -37898,7916:206,-166,90,0,0,0.0751059 -37899,7916:205,-165,90,0,0,0.0751059 -37900,7916:104,-164,90,0,0,0.0751059 -37901,7916:103,-163,90,0,0,0.0751128 -37902,7916:102,-162,90,0,0,0.0751128 -37903,7916:101,-161,90,0,0,0.07512 -37904,7916:100,-160,90,0,0,0.0751344 -37905,7915:209,-159,90,0,0,0.0751416 -37906,7915:208,-158,90,0,0,0.0751558 -37907,7915:207,-157,90,0,0,0.0751486 -37908,7915:206,-156,90,0,0,0.0751558 -37909,7915:205,-155,90,0,0,0.075163 -37910,7915:104,-154,90,0,0,0.0751486 -37911,7915:103,-153,90,0,0,0.075163 -37912,7915:102,-152,90,0,0,0.0751558 -37913,7915:101,-151,90,0,0,0.0751416 -37914,7915:100,-150,90,0,0,0.0751416 -37915,7914:209,-149,90,0,0,0.0751344 -37916,7914:208,-148,90,0,0,0.0751344 -37917,7914:207,-147,90,0,0,0.0751272 -37918,7914:206,-146,90,0,0,0.07512 -37919,7914:205,-145,90,0,0,0.07512 -37920,7914:104,-144,90,0,0,0.0751128 -37921,7914:103,-143,90,0,0,0.07512 -37922,7914:102,-142,90,0,0,0.0751128 -37923,7914:101,-141,90,0,0,0.0751128 -37924,7914:100,-140,90,0,0,0.07512 -37925,7913:209,-139,90,0,0,0.07512 -37926,7913:208,-138,90,0,0,0.0751272 -37927,7913:207,-137,90,0,0,0.07527 -37928,7913:206,-136,90,0,0,0.0758155 -37929,7913:205,-135,90,0,0,0.0776421 -37930,7913:104,-134,90,0,0,0.0779001 -37931,7911:100,-110,90,0,0,0.0832649 -37932,7910:209,-109,90,0,0,0.0880188 -37933,7910:206,-106,90,0,0,0.0759162 -37934,7910:205,-105,90,0,0,0.0753775 -37935,7910:104,-104,90,0,0,0.0768514 -37936,7910:103,-103,90,0,0,0.0810109 -37937,7906:101,-61,90,0,0,0.0753489 -37938,7906:100,-60,90,0,0,0.075163 -37939,7905:209,-59,90,0,0,0.0750201 -37940,7905:208,-58,90,0,0,0.074949 -37941,7905:207,-57,90,0,0,0.0749346 -37942,7905:206,-56,90,0,0,0.0749275 -37943,7905:205,-55,90,0,0,0.0749346 -37944,7905:104,-54,90,0,0,0.0749346 -37945,7905:103,-53,90,0,0,0.0749418 -37946,7905:102,-52,90,0,0,0.0749562 -37947,7905:101,-51,90,0,0,0.0749631 -37948,7905:100,-50,90,0,0,0.0749631 -37949,7904:209,-49,90,0,0,0.0749631 -37950,7904:208,-48,90,0,0,0.074949 -37951,7904:207,-47,90,0,0,0.0749703 -37952,7904:206,-46,90,0,0,0.0749988 -37953,7904:205,-45,90,0,0,0.0750273 -37954,7904:104,-44,90,0,0,0.0750201 -37955,7904:103,-43,90,0,0,0.0750201 -37956,7904:102,-42,90,0,0,0.0750131 -37957,7904:101,-41,90,0,0,0.0750201 -37958,7904:100,-40,90,0,0,0.0750345 -37959,7903:209,-39,90,0,0,0.0750345 -37960,7903:208,-38,90,0,0,0.0750345 -37961,7903:207,-37,90,0,0,0.0750345 -37962,7903:206,-36,90,0,0,0.0750345 -37963,7903:205,-35,90,0,0,0.0750416 -37964,7903:104,-34,90,0,0,0.0750345 -37965,7903:103,-33,90,0,0,0.0750345 -37966,7903:102,-32,90,0,0,0.0750416 -37967,7903:101,-31,90,0,0,0.0750488 -37968,7903:100,-30,90,0,0,0.0750488 -37969,7902:209,-29,90,0,0,0.0750488 -37970,7902:208,-28,90,0,0,0.0750345 -37971,7902:207,-27,90,0,0,0.0750201 -37972,7902:206,-26,90,0,0,0.0761183 -37973,7902:205,-25,90,0,0,0.0756715 -37974,7902:104,-24,90,0,0,0.0789397 -37975,1916:206,166,90,0,0,0.0752487 -37976,1916:207,167,90,0,0,0.075063 -37977,1916:208,168,90,0,0,0.0749846 -37978,1916:209,169,90,0,0,0.074899 -37979,1917:100,170,90,0,0,0.074892 -37980,1917:101,171,90,0,0,0.0748777 -37981,1917:102,172,90,0,0,0.0807894 -37982,1917:103,173,90,0,0,0.0878209 -37983,1917:104,174,90,0,0,0.087558 -37984,1917:205,175,90,0,0,0.0873776 -37985,1917:206,176,90,0,0,0.0863183 -37986,1917:207,177,90,0,0,0.0752844 -37987,1917:208,178,90,0,0,0.0748849 -37988,1917:209,179,90,0,0,0.074949 -37989,1918:100,180,90,0,0,0.0749916 - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRVl6d09hWEYrd05HbWJQNStIS0N6Yz0 - The warnings from the underlying MaxEnt model - text/csv - - - http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRmEyV3I5bDJEQnFHbWJQNStIS0N6Yz0 - ASCII Maps of the environmental layers for checking features aligments - text/csv - - - http://data-d.d4science.org/NXNBN09EaVF1UFp1OUtmNGlWNFVMR05OR3FlNGpPb0NHbWJQNStIS0N6Yz0 - World Thumbnail - image/png - - - http://data-d.d4science.org/SzZaRHBaSmhwSmR1OUtmNGlWNFVMTXVqSFdROTFEUjZHbWJQNStIS0N6Yz0 - ROC Curve - image/png - - - http://data-d.d4science.org/TGJsd3BFbmhJWGx1OUtmNGlWNFVMTWZmVStUUlU0WjlHbWJQNStIS0N6Yz0 - Omission-Commission Curve - image/png - - - http://data-d.d4science.org/M1ZFbElJaGJOYjl1OUtmNGlWNFVMQzNQakl0OXc5b0ZHbWJQNStIS0N6Yz0 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - text/csv - - - - - - - - -2016-05-06 17:11:06 DEBUG SClient4WPS:970 - Process Executed -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: #text -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: #text -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: wps:ComplexData -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: ogr:FeatureCollection -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: gml:featureMember -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRVl6d09hWEYrd05HbWJQNStIS0N6Yz0 -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:The warnings from the underlying MaxEnt model -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRmEyV3I5bDJEQnFHbWJQNStIS0N6Yz0 -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:ASCII Maps of the environmental layers for checking features aligments -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/NXNBN09EaVF1UFp1OUtmNGlWNFVMR05OR3FlNGpPb0NHbWJQNStIS0N6Yz0 -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:World Thumbnail -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/SzZaRHBaSmhwSmR1OUtmNGlWNFVMTXVqSFdROTFEUjZHbWJQNStIS0N6Yz0 -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:ROC Curve -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/TGJsd3BFbmhJWGx1OUtmNGlWNFVMTWZmVStUUlU0WjlHbWJQNStIS0N6Yz0 -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Omission-Commission Curve -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:image/png -2016-05-06 17:11:06 DEBUG SClient4WPS:574 - Node Name: ogr:Result -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Data- Value:http://data-d.d4science.org/M1ZFbElJaGJOYjl1OUtmNGlWNFVMQzNQakl0OXc5b0ZHbWJQNStIS0N6Yz0 -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:Description- Value:Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-06 17:11:06 DEBUG SClient4WPS:541 - Node Name: d4science:MimeType- Value:text/csv -2016-05-06 17:11:06 DEBUG SClient4WPS:516 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRVl6d09hWEYrd05HbWJQNStIS0N6Yz0, description=The warnings from the underlying MaxEnt model, mimeType=text/csv] -2016-05-06 17:11:06 DEBUG SClient4WPS:516 - ResponseWPS Map: F1-->ResponseWPS [data=http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRmEyV3I5bDJEQnFHbWJQNStIS0N6Yz0, description=ASCII Maps of the environmental layers for checking features aligments, mimeType=text/csv] -2016-05-06 17:11:06 DEBUG SClient4WPS:516 - ResponseWPS Map: F2-->ResponseWPS [data=http://data-d.d4science.org/NXNBN09EaVF1UFp1OUtmNGlWNFVMR05OR3FlNGpPb0NHbWJQNStIS0N6Yz0, description=World Thumbnail, mimeType=image/png] -2016-05-06 17:11:06 DEBUG SClient4WPS:516 - ResponseWPS Map: F3-->ResponseWPS [data=http://data-d.d4science.org/SzZaRHBaSmhwSmR1OUtmNGlWNFVMTXVqSFdROTFEUjZHbWJQNStIS0N6Yz0, description=ROC Curve, mimeType=image/png] -2016-05-06 17:11:06 DEBUG SClient4WPS:516 - ResponseWPS Map: F4-->ResponseWPS [data=http://data-d.d4science.org/TGJsd3BFbmhJWGx1OUtmNGlWNFVMTWZmVStUUlU0WjlHbWJQNStIS0N6Yz0, description=Omission-Commission Curve, mimeType=image/png] -2016-05-06 17:11:06 DEBUG SClient4WPS:516 - ResponseWPS Map: F5-->ResponseWPS [data=http://data-d.d4science.org/M1ZFbElJaGJOYjl1OUtmNGlWNFVMQzNQakl0OXc5b0ZHbWJQNStIS0N6Yz0, description=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], mimeType=text/csv] -2016-05-06 17:11:06 DEBUG SClient4WPS:1018 - Adding OBJ:F0 -2016-05-06 17:11:06 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRVl6d09hWEYrd05HbWJQNStIS0N6Yz0, name=F0, description=The warnings from the underlying MaxEnt model, typology=OBJECT] -2016-05-06 17:11:06 DEBUG SClient4WPS:1018 - Adding OBJ:F1 -2016-05-06 17:11:06 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRmEyV3I5bDJEQnFHbWJQNStIS0N6Yz0, name=F1, description=ASCII Maps of the environmental layers for checking features aligments, typology=OBJECT] -2016-05-06 17:11:06 DEBUG SClient4WPS:1018 - Adding OBJ:F2 -2016-05-06 17:11:06 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/NXNBN09EaVF1UFp1OUtmNGlWNFVMR05OR3FlNGpPb0NHbWJQNStIS0N6Yz0, name=F2, description=World Thumbnail, typology=OBJECT] -2016-05-06 17:11:06 DEBUG SClient4WPS:1018 - Adding OBJ:F3 -2016-05-06 17:11:06 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/SzZaRHBaSmhwSmR1OUtmNGlWNFVMTXVqSFdROTFEUjZHbWJQNStIS0N6Yz0, name=F3, description=ROC Curve, typology=OBJECT] -2016-05-06 17:11:06 DEBUG SClient4WPS:1018 - Adding OBJ:F4 -2016-05-06 17:11:06 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/TGJsd3BFbmhJWGx1OUtmNGlWNFVMTWZmVStUUlU0WjlHbWJQNStIS0N6Yz0, name=F4, description=Omission-Commission Curve, typology=OBJECT] -2016-05-06 17:11:06 DEBUG SClient4WPS:1018 - Adding OBJ:F5 -2016-05-06 17:11:06 DEBUG SClient4WPS:1024 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/M1ZFbElJaGJOYjl1OUtmNGlWNFVMQzNQakl0OXc5b0ZHbWJQNStIS0N6Yz0, name=F5, description=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], typology=OBJECT] -2016-05-06 17:11:06 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRVl6d09hWEYrd05HbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=The warnings from the underlying MaxEnt model, getDescription()=The warnings from the underlying MaxEnt model, getResourceType()=FILE], F1=FileResource [url=http://data-d.d4science.org/TGI1TlM2RjcrMmR1OUtmNGlWNFVMRmEyV3I5bDJEQnFHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F1, getName()=ASCII Maps of the environmental layers for checking features aligments, getDescription()=ASCII Maps of the environmental layers for checking features aligments, getResourceType()=FILE], F2=ImagesResource [link=http://data-d.d4science.org/NXNBN09EaVF1UFp1OUtmNGlWNFVMR05OR3FlNGpPb0NHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F2, getName()=World Thumbnail, getDescription()=World Thumbnail, getResourceType()=IMAGES], F3=ImagesResource [link=http://data-d.d4science.org/SzZaRHBaSmhwSmR1OUtmNGlWNFVMTXVqSFdROTFEUjZHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F3, getName()=ROC Curve, getDescription()=ROC Curve, getResourceType()=IMAGES], F4=ImagesResource [link=http://data-d.d4science.org/TGJsd3BFbmhJWGx1OUtmNGlWNFVMTWZmVStUUlU0WjlHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F4, getName()=Omission-Commission Curve, getDescription()=Omission-Commission Curve, getResourceType()=IMAGES], F5=FileResource [url=http://data-d.d4science.org/M1ZFbElJaGJOYjl1OUtmNGlWNFVMQzNQakl0OXc5b0ZHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F5, getName()=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], getDescription()=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-05-06 17:11:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:11:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:11:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:11:31 DEBUG DataMinerManagerServiceImpl:135 - StartComputation(): [ operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=maxent_, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=Latimeria, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=1000, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=0.5, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], TabularParameter [tableName=http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0, templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]], Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN], Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN], ObjectParameter [type=java.lang.Double, defaultValue=1, value=1.0, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=1, value=1.0, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ListParameter [type=java.lang.String, value=fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.Double, defaultValue=0, value=0.0, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=0, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]], hasImage=false]] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: maxent_ -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the table to produce -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OutputTableLabel -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->SpeciesName is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: generic_species -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The name of the species to model and the occurrence records refer to -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:SpeciesName -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->MaxIterations is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: 1000 -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The number of learning iterations of the MaxEnt algorithm -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:MaxIterations -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->DefaultPrevalence is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A priori probability of presence at ordinary occurrence points -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:DefaultPrevalence -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-06 17:11:31 DEBUG WPS2SM:325 - Conversion to SM Type->OccurrencesTable is a Complex Input -2016-05-06 17:11:31 DEBUG WPS2SM:331 - Max Megabytes: 1 -2016-05-06 17:11:31 DEBUG WPS2SM:207 - Default MimeType: text/xml -2016-05-06 17:11:31 DEBUG WPS2SM:208 - Default Schema: null -2016-05-06 17:11:31 DEBUG WPS2SM:209 - Default Encoding: null -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:OccurrencesTable -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: TabularParameter [tableName= , templates=[], defaultMimeType=text/xml, supportedMimeTypes=[text/xml, text/csv, text/plain]] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->LongitudeColumn is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: decimallongitude -2016-05-06 17:11:31 DEBUG WPS2SM:129 - Machter title: The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude] -2016-05-06 17:11:31 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 17:11:31 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 17:11:31 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-06 17:11:31 DEBUG WPS2SM:133 - Machter end: 82 -2016-05-06 17:11:31 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 17:11:31 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing longitude values [the name of a column from OccurrencesTable] -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LongitudeColumn -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->LatitudeColumn is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: decimallatitude -2016-05-06 17:11:31 DEBUG WPS2SM:129 - Machter title: The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude] -2016-05-06 17:11:31 DEBUG WPS2SM:130 - Machter find: true -2016-05-06 17:11:31 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-06 17:11:31 DEBUG WPS2SM:132 - Machter start: 39 -2016-05-06 17:11:31 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-06 17:11:31 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-06 17:11:31 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The column containing latitude values [the name of a column from OccurrencesTable] -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:LatitudeColumn -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->XResolution is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the X axis in decimal degrees -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:XResolution -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->YResolution is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Model projection resolution on the Y axis in decimal degrees -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:YResolution -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->Layers is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: -2016-05-06 17:11:31 DEBUG WPS2SM:148 - Machter title: The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-06 17:11:31 DEBUG WPS2SM:149 - Machter find: true -2016-05-06 17:11:31 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-06 17:11:31 DEBUG WPS2SM:151 - Machter start: 501 -2016-05-06 17:11:31 DEBUG WPS2SM:152 - Machter end: 536 -2016-05-06 17:11:31 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-06 17:11:31 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Layers -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->Z is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:Z -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 17:11:31 DEBUG WPS2SM:300 - Conversion to SM Type->TimeIndex is a Literal Input -2016-05-06 17:11:31 DEBUG WPS2SM:92 - WPS type: -2016-05-06 17:11:31 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-06 17:11:31 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-06 17:11:31 DEBUG WPS2SM:339 - Conversion to SM Type->Title:Time Index. The default is the first time indexed in the input environmental datasets -2016-05-06 17:11:31 DEBUG WPS2SM:340 - Conversion to SM Type->Name:TimeIndex -2016-05-06 17:11:31 DEBUG WPS2SM:341 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-06 17:11:31 DEBUG SClient4WPS:683 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=OutputTableLabel, value=maxent_] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=SpeciesName, value=Latimeria] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=MaxIterations, value=1000] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=DefaultPrevalence, value=0.5] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=OccurrencesTable, value=http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=LongitudeColumn, value=decimalLongitude] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=LatitudeColumn, value=decimalLatitude] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=XResolution, value=1.0] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=YResolution, value=1.0] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=Layers, value=fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=Z, value=0.0] -2016-05-06 17:11:31 DEBUG SClient4WPS:691 - UserInputs[key=TimeIndex, value=0] -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: OutputTableLabel to: maxent_ -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: SpeciesName to: Latimeria -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: MaxIterations to: 1000 -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: DefaultPrevalence to: 0.5 -2016-05-06 17:11:31 DEBUG SClient4WPS:744 - Configuring Complex: OccurrencesTable to: http://data-d.d4science.org/bVZIS3dkSCtWT2ZWVzJiZkRqZUFrR2llNkRBZ0haYzBHbWJQNStIS0N6Yz0 -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: LongitudeColumn to: decimalLongitude -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: LatitudeColumn to: decimalLatitude -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: XResolution to: 1.0 -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: YResolution to: 1.0 -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: Layers to: fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31 -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: Z to: 0.0 -2016-05-06 17:11:31 DEBUG SClient4WPS:727 - Configuring Literal: TimeIndex to: 0 -2016-05-06 17:11:31 INFO StatWPSClientSession:84 - CONNECT -2016-05-06 17:11:31 DEBUG SClient4WPS:388 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - - - OutputTableLabel - - maxent_ - - - - SpeciesName - - Latimeria - - - - MaxIterations - - 1000 - - - - DefaultPrevalence - - 0.5 - - - - OccurrencesTable - - - - LongitudeColumn - - decimalLongitude - - - - LatitudeColumn - - decimalLatitude - - - - XResolution - - 1.0 - - - - YResolution - - 1.0 - - - - Layers - - fc9ac2f4-a2bd-43d1-a361-ac67c5ceac31 - - - - Z - - 0.0 - - - - TimeIndex - - 0 - - - - - - - ASCII Maps of the environmental layers for checking features aligments - - - OutputTable7 - - - non_deterministic_output - - - - -2016-05-06 17:11:31 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-05-06 17:11:31 DEBUG SClient4WPS:415 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:11:31 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-06 17:11:31 DEBUG SClient4WPS:787 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:11:31 DEBUG SClient4WPS:697 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:11:31 DEBUG SClient4WPS:708 - ComputationId: ComputationId [id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46] -2016-05-06 17:11:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:11:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:11:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:11:41 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46] -2016-05-06 17:11:41 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:11:41 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:11:41 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:11:41 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:11:41 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:11:41 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:11:41 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 17:11:41 DEBUG SClient4WPS:889 - WPS STATUS:10.0 -2016-05-06 17:11:41 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=10.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 17:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-06 17:11:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-06 17:11:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:11:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:11:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:11:51 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46] -2016-05-06 17:11:51 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:11:51 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:11:51 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:11:51 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:11:51 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:11:51 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:11:51 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 17:11:51 DEBUG SClient4WPS:889 - WPS STATUS:30.0 -2016-05-06 17:11:51 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=30.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 17:12:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:12:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:12:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:12:01 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46] -2016-05-06 17:12:01 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:12:01 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:12:01 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:12:01 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:12:01 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:12:01 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:12:01 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 17:12:01 DEBUG SClient4WPS:889 - WPS STATUS:30.0 -2016-05-06 17:12:01 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=30.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 17:12:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-06 17:12:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-06 17:12:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:12:11 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46] -2016-05-06 17:12:11 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:12:11 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:12:11 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:12:11 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:12:11 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:12:11 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:12:11 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 17:12:11 DEBUG SClient4WPS:889 - WPS STATUS:30.0 -2016-05-06 17:12:11 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=30.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 17:12:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:12:21 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:12:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:12:21 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46] -2016-05-06 17:12:21 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:12:21 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:12:21 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:12:21 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:12:21 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:12:21 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:12:21 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - - - -2016-05-06 17:12:21 DEBUG SClient4WPS:889 - WPS STATUS:30.0 -2016-05-06 17:12:21 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=30.0, status=RUNNING, endDate=null, message=null, errResource=null] -2016-05-06 17:12:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-06 17:12:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-06 17:12:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:12:31 DEBUG SClient4WPS:801 - GetComputationStatus(): ComputationId=ComputationId [id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46] -2016-05-06 17:12:31 INFO StatWPSClientSession:114 - CONNECT -2016-05-06 17:12:31 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-05-06 17:12:31 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:12:31 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:12:31 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:12:32 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:12:32 DEBUG SClient4WPS:817 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - Process successful - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - - _______________________________________________ __ ____ ______________________________________ _______________ - - - - - - -_______________________ _____ __ _ _ _ _____ ___________________________________________________________________________ ______ ___ __ ____ ___ ___________________________________________________ -_____________________ _____ ___ __ _ _ __ _____ ___ __ _ ______________________________________________________________ _ ____ ____________________________________________________ -________________ _____ ______ _ _____ _ ____________ _____ _______________________________________________________ _______ _ ____________________________________________________ -______________________ ______ _____ __ ______________ ____ _______________________________________________ _________ __________ _ __ ___________________________________________________ -__________________ __ _ ____ ____ ___ ______ __ ____ ____ _ _ _____________________________________ _ ________ _______________ _ ________________________________________________ -__________________ __ _____ _ _ ___ ___ _ ______ _________ _ __ _ ____________________________________ __________ _____________ ______________ _______________________________ -___________________ _ ____ _ _ ___ ___ __ _____ ___ __ ___ __ _________________________________ ____________ ___________ _________ ________________________________ -____________________ ______ _ ___ ______________ ___ __ ___ _ ____ _ _____________________________________________ ________ _______ _________________________________ -_________________________ __ _ _ ______ ____ ___________ __ __ _ ______________________________________________ __________ _____ _________________________________ -________________________ _______ __ _ ___ _ ___ __ __ _ _________________________________________________ _____ _______________________________________ -___________________________ ________ __ __________ __ ______ _ __ _______________________________________ ______ ____________________________________ -____________________________ ______ _____ _____ __ _ ____ ____ _______________ ____________________________ _ _____________________________________ -_____________________________________ _____ _ ___ ______ ________ __ ___________ _____________________________ ___________________________________ -____________________________________ ____ _ _ ___________ _________ _______________________ _ ____________________________________ -___________________________________ _____ _ ________ ___________ ____________________________ ________________________________________ -________________________________ ____ _ __________ _______________ ________________________ __ ________________________________________ -_______________________________ ___ _ _____________ _ _________________________________________ ______________________________________ -_______________________________ ___ __ _____________ _____________________________________________ ______________________________________ -_____________________________ _ _ ______________ ___________________________________ __ _______ ________________________ -_____________________________ ____ _ ____________ _ ____________________________ _ _ ______ _______________________ -__________________________ _ _ _______ ___________ ____________________________ __ ____________ ____________________ -______________________ _ _ ________ _ __________ __________________________ ______ __ ______ _________________________ -_______________ ______ _________ _ _________ __________________________ __ _ ___ _________________________ -____________ _________ ____________ _____________ __________________________ ______________________ -___________ ___________ __________ ___________ __________________________ ______________________ -__________ ________________ ___ __ ________ _ __________________________ ______________ __ -__________ ______________ ______ _ __________ _ __________________________ ___ ________________ -________ ____________________ ___ _ _______ ___________________________ ___ _ ___ ____ -___________ __________________ ________ _ ________ _____________________________ _ _ _ - ___________ ____________________ _____ ___________ __________________________________ __ - _ __ __________________ __ _ ___________ ___________________________________ ___ __ - ____ _________________ ___ _____________ _____________ ____________________ ____ __ _ -___ __________ _________________ __________________ ______________ _________________ ________ __ -____________ _ _ ______________ _________________ _______________ _________________ _____ ____ -____________ _ __________ ____________ ___________________ __________________ ____________________ ____ __ ___ -____________ _ _____________ _ ____________ ____ ______________ ________________________________________ _______ _ __ -_____________ __ _______________ ___________ __ ______________ _ ___________________________________ _____ _ __ ___ _ ______ -___________ ___ ____________________ _______ __ ________________ ___________________________________________ __ _____ __ _______ ________ -________________ ___ _ ___________________ _ ______ ________________________________________________________________ _ ____ __________ _____ ________________ -____________________ _ ________________________ ___ __________________________________________________ _ ___________ __ _____ ___________________ ________________ -___________________ _________________________ _ ___ __________________________________________________ _________ _____ __________________ ________________ -_________________ ___________________________ ___ __ ___________________________________________________ ___________ ___ _ __ ________________ ________________ -________________ __________________________________ ___ _________________________________________________ __________ __________________ _________________ -____________________________________________________ __ _____________________________________________ __ ______ ______________ ___ _____________ -____________ ______________________________________ ___________________________________________ _ ___ ____________ ____________________ -_____________________________________________________ _ ____________________________________________ __ __ _ ____________ _____________________ -_______________________________________________________ __ ___________________________________________ _____ _ _ ____________ _____________________ -_______________________________________________________ ____ _____ _________________________________________________ ____ _ ___________ _______________________ -________________________________________________________ _ ______ __________________________________________________ ___ __ ____________________________________ -________________________________________________________ ______ _______________________________________________ ___ __ ________________________________________ -________________________________________________________ ____ ______ _________________________________________________ __________ ___ ____________________________________ -________________________________________________________ __ __________________________________________________________ _ ____________ __________________________________________ -________________________________________________________ _ _____________________________________________________________ ___ _____________ _____ _____________________________________ -________________________________________________________ ____ ______________________________________________________________ ___ ____ ______________ _______ ___________________________________ -________________________________________________________ _____________________________________________________________ ________ _____ ___ _ __________ ____________________________________ -________________________________________________________ _____________________________________________________________ __________ __ __ __ _ __________ _______________________________________ -_________________________________________________________ ________________________________________________________________ _______ ______ ___ ___ ___ __ ____________ ______________________________________ -_________________________________________________________ __________________________________________________________________ ________ ______ ____ ___ _______ ____________ ______________________________________ -__________________________________________________________ _______________________________________________ ___________________ _____________ ______ ____ _ _____ __________ _______________________________________ -___________________________________________________________ ___________________________________________________________________ ________ _ ____________ ______ _ __ _____ _________ _______________________________________ -___________________________________________________________ ___________________________________________________________________________ _________________________ _______ _______ _______________________________________ -____________________________________________________________ _______________________________________________________________________ _________________________ ______ ____ _ _ __________________________________________ -_______________________________________________________________ ________________________________________________________________________ ________________________ _____ ___ _______________________________________________ -________________________________________________________________ _______________________________________________________________________ ____ ___________ __________ _________________________________________________ -________________________________________________________________ _ _______________________________________________________________________ __ _ __________________________________________________________ -_________________________________________________________________ _ ___ ______ _______________________________________________________________________ ___ __________________________________________________________ -__________________________________________________________________ _ ______________ _______________________________________________________________ _____ _ ___ ___________________________________________________________ -___________________________________________________________________ __ _______________ ___________________________________________________________________ __ ____ _ ____________________________________________________________ -____________________________________________________________________ __ ________________ __________________________________________________________________ __ ____ __ _____________________________________________________________ -_____________________________________________________________________ ___ __________________________________________________________________________________ __ __ ___________ __ __ ________________________________________________________ -__________________________________________________________________________ ______________ _______________________________________________________________ ___ _________ ____ ___________________________________________________________ -______________________ ____________________________________________________ _________ ___ ____ ___________________________________________________________ __ __________ _ _____ __ _____________________________________________________________________ -___________________________________________________________________________ ______ __________ __________________________________________________________ ____ _______________ _______ __________________________________________________________________________ -_____________________________________________________________________________ _ __________ ___ _ _ _________________________________________________ ____ ________________ __________ ___ __________ ___________________________________________________________ -________________________________________________________________________________ ________________________________________________________________________ __ _ ___________________ ____________ _____________ __________________________________________________________ -_______________________________________________________________________________________ ____________________________________________________________________ ___ _____________________ _ _________________ ____________ ___________________________________________________________ -_________________________________________________________________________________________ __________________________________________________________________ _ ________________________ _ __________________ ___________ _________________________________________________________ -_____________________________________________________________________________________________ _____________ _____________________________________________________ _ ____________________________ __ ____________ _____ _ _______________________________________________________________________ -_______________________________________________________________________________________________ _________ _ _____________________________________________________ ____ ______________________ ___ __________________ ____ ______________ _ _________________________________________ __ __________ -________________________________________________________________________________________________ _______ ________________________________________________ ______________________ ___ ___________________ ______ ____________ ___ _________________________________________________________ -__________________________________________________________________________________________________ __ ______________________________________________ _______________________ ____ __ _________________ _______________________ ______________________________________________________ -_______________________________________________________________________________________________________ ______________________________________________ ________________________ _______ __________________ _______________ _______ _______________________________________________________ -_______________________________________________________________________________________________________ ___________________________________________ ____ _______ ________________________ ______________________ __ ____________ _____________________________________________________________ -_______________________________________________________________________________________________________ _____________________________________________________________ __________________________ ________________________ __ __________ _______________________________________________________________ -______________________________________________________________________________________________________ ____________________________________________________________ ___________________________ _________________________ _ _______ _________ ____________________________________________________ -____________________________________________________________________________________________________ ____________________________________________________________ _____________________________ __________________________ ______ ___ ___ ____________________________________________________ -____________________________________________________________________________________________________ _______________________________________________________ _______________________________ _________________________ _ _____ __ _ _______ ______________________________________________ -____________________________________________________________________________________________________ _____________________________________________________ ________________________________ ____________________________ ____ ___ ___________ __ ________________________________________ -____________________________________________________________________________________________________ __________________________________________________ _________________________________ _____________________________ ________ ____ _ ____________ ________ ___________________________ -____________________________________________________________________________________________________ _______________________________________________ __________________________________ _______________________________ _____________ __ _______________ ____ __ _________________________ -_____________________________________________________________________________________________________ ________________________________________________ _________________________________ _________________________________ ________________________ _________ _______________________ -______________________________________________________________________________________________________ _________________________________________________ _________________________________ __________________________________________ ___ _____________ ___ ____________ ___________________ -______________________________________________________________________________________________________ __________________________________________________ _________________________________ _______________________________________________ __ ________________________ ______________________________ -_______________________________________________________________________________________________________ ___________________________________________________ __ _____________________________ _________________________________________________________ _ _________ _____________________________________ -________________________________________________________________________________________________________ ____________________________________________________ ________ _______________________ _________________________________________________________ _____ _____________________________________ -_________________________________________________________________________________________________________ ____________________________________________________ _______ _______________________ ____________________________________________________ _ ______ ___________________________________ -__________________________________________________________________________________________________________ ___________________________________________________ _____ _______________________ ___________________________________________________ ____ ___________________________________ -_____________________________________________________________________________________________________________ ___________________________________________________ ______ _______________________ _________________________________________________ __ __________________________________ -______________________________________________________________________________________________________________ ____________________________________________________ _________ ________________________ ________________________________________________ __________________________________ -______________________________________________________________________________________________________________ ______________________________________________________ _________ ________________________ _____________________________________________ _______________________________ -______________________________________________________________________________________________________________ _______________________________________________________ ________ _________________________ _________________________________________ _______________________________ -______________________________________________________________________________________________________________ ___________________________________________________________ ________ _________________________ _________________________________________ _____________________________ -______________________________________________________________________________________________________________ ______________________________________________________________ _________ __________________________ ________________________________________ ____________________________ -______________________________________________________________________________________________________________ _______________________________________________________________ ________________________________________ _________________________________________ ___________________________ -______________________________________________________________________________________________________________ ________________________________________________________________ ________________________________________ _________________________________________ ___________________________ -_____________________________________________________________________________________________________________ __________________________________________________________________ _________________________________________ _________________________________________ ___________________________ -_____________________________________________________________________________________________________________ ___________________________________________________________________ __________________________________________ __________________________________________ ___________________________ -_____________________________________________________________________________________________________________ _____________________________________________________________________ ___________________________________________ __________________________________________ ___________________________ -_____________________________________________________________________________________________________________ ______________________________________________________________________ _____________________________________________ __________________________________________ _________ ____________________________ -_____________________________________________________________________________________________________________ ________________________________________________________________________ ________________________________________________ __________________________________________ ________________ _ _____________________________ -____________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ _________________________________________________________________ _______________________ ______ -____________________________________________________________________________________________________________ _________________________________________________________________________________________________________________________________ ___________________________________________________________________ ________________________ _____ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ ___________________________________________________________________ __________________________ ____ -___________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________ _____________________________________________________________________________________________________ __ -___________________________________________________________________________________________________________ _______________________________________________________________________________________________________________________________________ ______________________________________________________________________________________________________ ___ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ _______________________________________________________________________ ________________________ ____ -__________________________________________________________________________________________________________ _ ________________________________________________________________________________________________________________________________________ ________________________________________________________________________ _______________________ _______ -___________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ _________________________________________________________________________ ______________________ _______ -__________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ ______________________________________________________________________________________________ _________ -__________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ _____________________________________________________________________________________________ __________ -__________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ ______________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -__________________________________________________________________________________________________________ ________ ___________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -___________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -___________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________ ___________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_______________________________________________________________________________________________________________ _____________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_____________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_________________________________________________________________________________________________________________________ __________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -_______________________________________________________________________________________________________________________ _ _________________________________________________________________________________________________________________________________ ___________________________________________________________________________________________________________ -____________________________________________________________________________________________________________________ ____________________________________________________________________________________________________________________________________ ______________________ ___________________________________ _____________________________________________ -__________________________________________________________________________________________________________________ _ _____________________________________________________________________________________________________________________________________ ______________________ ________ _____________________ _____________________________________________ -__________________________________________________________________________________________________________________ _______________________________________________________________________________________________________________ ________________ ________ _ ______ ___ _ _______ ____ __________________________________________ -________________________________________________________________________________________________________________ _____________________________________________________________________________________________________________ _ _______________ _________ ____________________________________ -_______________________________________________________________________________________________________________ _ ___________________________________________________________________________________________________________ _ ________ ________ ___________________________________ -_________________________________________________________________________________________________________________ ______________________________________________________________________________________________________ ___ ______ ________________________________ -_________________________________________________________________________________________________________________ ______________________________________________________________________________________________ ______ _ _____ _________________________ -____________________________________________________________________________________________________________ __ ___________________________________________________________________________________________ ____ ____ _______________________ -____________________________________________________________________________________________________________ _ ___________________________________________________________________________ ___________ ____________________ -__________________________________________________________________________________________________________ _______________________________________________________ _________________ -_________________________________________________________________________________________________________ ___________________________________________________ ____________ -___________________________________________________________________________________________________________ ________________________________________________ ___________ -_________________________________________________________________________________ _______________________ ________________________________________________ _________ -______________________________________________________________________________ ______________________ ______________________________________________ __________ -_____________________________________________________________________________ __________ ___ ____________________________________________ __________ -_____________________________________________________________________________ _____ ________________________________________ ___________ -_____________________________________________________ ______________ ______ __ _________________________________________ _____________ -_____________________________________________________ _ _ ____ ______ _________________________________________ ______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ -_______________________________________________ __ ____ ______________________________________ _______________ - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - id,csquarecode,x,y,z,time,fvalue -1,5918:100,-180,-90,0,0,0.0749916 -2,5917:209,-179,-90,0,0,0.0750201 -3,5917:208,-178,-90,0,0,0.0750201 -4,5917:207,-177,-90,0,0,0.0750416 -5,5917:206,-176,-90,0,0,0.0750488 -6,5917:205,-175,-90,0,0,0.0750558 -7,5917:104,-174,-90,0,0,0.0750702 -8,5917:103,-173,-90,0,0,0.0750773 -9,5917:102,-172,-90,0,0,0.0750843 -10,5917:101,-171,-90,0,0,0.0750843 -11,5917:100,-170,-90,0,0,0.0750915 -12,5916:209,-169,-90,0,0,0.0750987 -13,5916:208,-168,-90,0,0,0.0751059 -14,5916:207,-167,-90,0,0,0.0751128 -15,5916:206,-166,-90,0,0,0.0751059 -16,5916:205,-165,-90,0,0,0.0751059 -17,5916:104,-164,-90,0,0,0.0751059 -18,5916:103,-163,-90,0,0,0.0751128 -19,5916:102,-162,-90,0,0,0.0751128 -20,5916:101,-161,-90,0,0,0.07512 -21,5916:100,-160,-90,0,0,0.0751344 -22,5915:209,-159,-90,0,0,0.0751416 -23,5915:208,-158,-90,0,0,0.0751558 -24,5915:207,-157,-90,0,0,0.0751486 -25,5915:206,-156,-90,0,0,0.0751558 -26,5915:205,-155,-90,0,0,0.075163 -27,5915:104,-154,-90,0,0,0.0751486 -28,5915:103,-153,-90,0,0,0.075163 -29,5915:102,-152,-90,0,0,0.0751558 -30,5915:101,-151,-90,0,0,0.0751416 -31,5915:100,-150,-90,0,0,0.0751416 -32,5914:209,-149,-90,0,0,0.0751344 -33,5914:208,-148,-90,0,0,0.0751344 -34,5914:207,-147,-90,0,0,0.0751272 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-63,5905:102,-52,-90,0,0,0.0749562 -64,5905:101,-51,-90,0,0,0.0749631 -65,5905:100,-50,-90,0,0,0.0749631 -66,5904:209,-49,-90,0,0,0.0749631 -67,5904:208,-48,-90,0,0,0.074949 -68,5904:207,-47,-90,0,0,0.0749703 -69,5904:206,-46,-90,0,0,0.0749988 -70,5904:205,-45,-90,0,0,0.0750273 -71,5904:104,-44,-90,0,0,0.0750201 -72,5904:103,-43,-90,0,0,0.0750201 -73,5904:102,-42,-90,0,0,0.0750131 -74,5904:101,-41,-90,0,0,0.0750201 -75,5904:100,-40,-90,0,0,0.0750345 -76,5903:209,-39,-90,0,0,0.0750345 -77,5903:208,-38,-90,0,0,0.0750345 -78,5903:207,-37,-90,0,0,0.0750345 -79,5903:206,-36,-90,0,0,0.0750345 -80,5903:205,-35,-90,0,0,0.0750416 -81,5903:104,-34,-90,0,0,0.0750345 -82,5903:103,-33,-90,0,0,0.0750345 -83,5903:102,-32,-90,0,0,0.0750416 -84,5903:101,-31,-90,0,0,0.0750488 -85,5903:100,-30,-90,0,0,0.0750488 -86,5902:209,-29,-90,0,0,0.0750488 -87,5902:208,-28,-90,0,0,0.0750345 -88,5902:207,-27,-90,0,0,0.0750201 -89,5902:206,-26,-90,0,0,0.0761183 -90,5902:205,-25,-90,0,0,0.0756715 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-37824,1811:237,117,83,0,0,0.089523 -37825,1811:238,118,83,0,0,0.0895062 -37826,1812:131,121,83,0,0,0.089523 -37827,1812:132,122,83,0,0,0.089523 -37828,1812:133,123,83,0,0,0.089523 -37829,1812:134,124,83,0,0,0.089523 -37830,1812:236,126,83,0,0,0.0895146 -37831,1812:237,127,83,0,0,0.0894977 -37832,1812:238,128,83,0,0,0.0885232 -37833,1813:130,130,83,0,0,0.0831004 -37834,1813:131,131,83,0,0,0.08222 -37835,1813:132,132,83,0,0,0.0818873 -37836,1813:133,133,83,0,0,0.0807971 -37837,1813:134,134,83,0,0,0.0799542 -37838,1813:235,135,83,0,0,0.0793815 -37839,1813:236,136,83,0,0,0.0776055 -37840,1813:237,137,83,0,0,0.0763208 -37841,1813:238,138,83,0,0,0.0769315 -37842,1813:239,139,83,0,0,0.080128 -37843,1814:130,140,83,0,0,0.0801509 -37844,1814:131,141,83,0,0,0.0799542 -37845,1814:132,142,83,0,0,0.0773852 -37846,1814:133,143,83,0,0,0.0765457 -37847,1814:134,144,83,0,0,0.0763281 -37848,1814:235,145,83,0,0,0.0764079 -37849,1814:236,146,83,0,0,0.0765022 -37850,1814:237,147,83,0,0,0.0766038 -37851,1814:238,148,83,0,0,0.0766111 -37852,1814:239,149,83,0,0,0.0763933 -37853,1815:130,150,83,0,0,0.0762196 -37854,1815:131,151,83,0,0,0.0763933 -37855,1815:132,152,83,0,0,0.0756932 -37856,1815:133,153,83,0,0,0.075442 -37857,1815:134,154,83,0,0,0.0753203 -37858,1815:235,155,83,0,0,0.0753561 -37859,1815:236,156,83,0,0,0.0753631 -37860,1815:237,157,83,0,0,0.0753775 -37861,1815:238,158,83,0,0,0.0753847 -37862,1815:239,159,83,0,0,0.0755781 -37863,1816:130,160,83,0,0,0.0756932 -37864,1816:131,161,83,0,0,0.0756645 -37865,1816:132,162,83,0,0,0.07565 -37866,1816:133,163,83,0,0,0.0757507 -37867,1816:134,164,83,0,0,0.0758874 -37868,1816:235,165,83,0,0,0.0759956 -37869,1816:236,166,83,0,0,0.0760606 -37870,1816:237,167,83,0,0,0.0761618 -37871,1816:238,168,83,0,0,0.0762123 -37872,1816:239,169,83,0,0,0.0762413 -37873,1817:130,170,83,0,0,0.0762848 -37874,1817:131,171,83,0,0,0.0762918 -37875,1817:132,172,83,0,0,0.0762848 -37876,1817:133,173,83,0,0,0.0762848 -37877,1817:134,174,83,0,0,0.0762848 -37878,1817:235,175,83,0,0,0.0762848 -37879,1817:236,176,83,0,0,0.0762918 -37880,1817:237,177,83,0,0,0.0762918 -37881,1817:238,178,83,0,0,0.0762848 -37882,1817:239,179,83,0,0,0.0762918 -37883,1818:130,180,83,0,0,0.0762775 -37884,7918:100,-180,90,0,0,0.0749916 -37885,7917:209,-179,90,0,0,0.0750201 -37886,7917:208,-178,90,0,0,0.0750201 -37887,7917:207,-177,90,0,0,0.0750416 -37888,7917:206,-176,90,0,0,0.0750488 -37889,7917:205,-175,90,0,0,0.0750558 -37890,7917:104,-174,90,0,0,0.0750702 -37891,7917:103,-173,90,0,0,0.0750773 -37892,7917:102,-172,90,0,0,0.0750843 -37893,7917:101,-171,90,0,0,0.0750843 -37894,7917:100,-170,90,0,0,0.0750915 -37895,7916:209,-169,90,0,0,0.0750987 -37896,7916:208,-168,90,0,0,0.0751059 -37897,7916:207,-167,90,0,0,0.0751128 -37898,7916:206,-166,90,0,0,0.0751059 -37899,7916:205,-165,90,0,0,0.0751059 -37900,7916:104,-164,90,0,0,0.0751059 -37901,7916:103,-163,90,0,0,0.0751128 -37902,7916:102,-162,90,0,0,0.0751128 -37903,7916:101,-161,90,0,0,0.07512 -37904,7916:100,-160,90,0,0,0.0751344 -37905,7915:209,-159,90,0,0,0.0751416 -37906,7915:208,-158,90,0,0,0.0751558 -37907,7915:207,-157,90,0,0,0.0751486 -37908,7915:206,-156,90,0,0,0.0751558 -37909,7915:205,-155,90,0,0,0.075163 -37910,7915:104,-154,90,0,0,0.0751486 -37911,7915:103,-153,90,0,0,0.075163 -37912,7915:102,-152,90,0,0,0.0751558 -37913,7915:101,-151,90,0,0,0.0751416 -37914,7915:100,-150,90,0,0,0.0751416 -37915,7914:209,-149,90,0,0,0.0751344 -37916,7914:208,-148,90,0,0,0.0751344 -37917,7914:207,-147,90,0,0,0.0751272 -37918,7914:206,-146,90,0,0,0.07512 -37919,7914:205,-145,90,0,0,0.07512 -37920,7914:104,-144,90,0,0,0.0751128 -37921,7914:103,-143,90,0,0,0.07512 -37922,7914:102,-142,90,0,0,0.0751128 -37923,7914:101,-141,90,0,0,0.0751128 -37924,7914:100,-140,90,0,0,0.07512 -37925,7913:209,-139,90,0,0,0.07512 -37926,7913:208,-138,90,0,0,0.0751272 -37927,7913:207,-137,90,0,0,0.07527 -37928,7913:206,-136,90,0,0,0.0758155 -37929,7913:205,-135,90,0,0,0.0776421 -37930,7913:104,-134,90,0,0,0.0779001 -37931,7911:100,-110,90,0,0,0.0832649 -37932,7910:209,-109,90,0,0,0.0880188 -37933,7910:206,-106,90,0,0,0.0759162 -37934,7910:205,-105,90,0,0,0.0753775 -37935,7910:104,-104,90,0,0,0.0768514 -37936,7910:103,-103,90,0,0,0.0810109 -37937,7906:101,-61,90,0,0,0.0753489 -37938,7906:100,-60,90,0,0,0.075163 -37939,7905:209,-59,90,0,0,0.0750201 -37940,7905:208,-58,90,0,0,0.074949 -37941,7905:207,-57,90,0,0,0.0749346 -37942,7905:206,-56,90,0,0,0.0749275 -37943,7905:205,-55,90,0,0,0.0749346 -37944,7905:104,-54,90,0,0,0.0749346 -37945,7905:103,-53,90,0,0,0.0749418 -37946,7905:102,-52,90,0,0,0.0749562 -37947,7905:101,-51,90,0,0,0.0749631 -37948,7905:100,-50,90,0,0,0.0749631 -37949,7904:209,-49,90,0,0,0.0749631 -37950,7904:208,-48,90,0,0,0.074949 -37951,7904:207,-47,90,0,0,0.0749703 -37952,7904:206,-46,90,0,0,0.0749988 -37953,7904:205,-45,90,0,0,0.0750273 -37954,7904:104,-44,90,0,0,0.0750201 -37955,7904:103,-43,90,0,0,0.0750201 -37956,7904:102,-42,90,0,0,0.0750131 -37957,7904:101,-41,90,0,0,0.0750201 -37958,7904:100,-40,90,0,0,0.0750345 -37959,7903:209,-39,90,0,0,0.0750345 -37960,7903:208,-38,90,0,0,0.0750345 -37961,7903:207,-37,90,0,0,0.0750345 -37962,7903:206,-36,90,0,0,0.0750345 -37963,7903:205,-35,90,0,0,0.0750416 -37964,7903:104,-34,90,0,0,0.0750345 -37965,7903:103,-33,90,0,0,0.0750345 -37966,7903:102,-32,90,0,0,0.0750416 -37967,7903:101,-31,90,0,0,0.0750488 -37968,7903:100,-30,90,0,0,0.0750488 -37969,7902:209,-29,90,0,0,0.0750488 -37970,7902:208,-28,90,0,0,0.0750345 -37971,7902:207,-27,90,0,0,0.0750201 -37972,7902:206,-26,90,0,0,0.0761183 -37973,7902:205,-25,90,0,0,0.0756715 -37974,7902:104,-24,90,0,0,0.0789397 -37975,1916:206,166,90,0,0,0.0752487 -37976,1916:207,167,90,0,0,0.075063 -37977,1916:208,168,90,0,0,0.0749846 -37978,1916:209,169,90,0,0,0.074899 -37979,1917:100,170,90,0,0,0.074892 -37980,1917:101,171,90,0,0,0.0748777 -37981,1917:102,172,90,0,0,0.0807894 -37982,1917:103,173,90,0,0,0.0878209 -37983,1917:104,174,90,0,0,0.087558 -37984,1917:205,175,90,0,0,0.0873776 -37985,1917:206,176,90,0,0,0.0863183 -37986,1917:207,177,90,0,0,0.0752844 -37987,1917:208,178,90,0,0,0.0748849 -37988,1917:209,179,90,0,0,0.074949 -37989,1918:100,180,90,0,0,0.0749916 - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/N3hZMGdVTWZWdU51OUtmNGlWNFVMUEVwMFptYVc5MGtHbWJQNStIS0N6Yz0 - The warnings from the underlying MaxEnt model - text/csv - - - http://data-d.d4science.org/K1E3VTZxSGFNMTl1OUtmNGlWNFVMRzVvV05iRzVtNjdHbWJQNStIS0N6Yz0 - ASCII Maps of the environmental layers for checking features aligments - text/csv - - - http://data-d.d4science.org/Y0V2dzVuWkR0WkZ1OUtmNGlWNFVMQnNxOUtEM2ZXODhHbWJQNStIS0N6Yz0 - World Thumbnail - image/png - - - http://data-d.d4science.org/SnNhQnBVSWpDczV1OUtmNGlWNFVMSkhnaEZrall3TWpHbWJQNStIS0N6Yz0 - ROC Curve - image/png - - - http://data-d.d4science.org/MGs1amU2VEVmVTF1OUtmNGlWNFVMSjlTc2xqOUJCVFVHbWJQNStIS0N6Yz0 - Omission-Commission Curve - image/png - - - http://data-d.d4science.org/MGs1amU2VEVmVTF1OUtmNGlWNFVMSGlZK3c0SVVFcjJHbWJQNStIS0N6Yz0 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - text/csv - - - - - - - - -2016-05-06 17:12:32 DEBUG SClient4WPS:875 - WPS SUCCESS -2016-05-06 17:12:32 DEBUG SClient4WPS:900 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-05-06 17:12:33 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46] -2016-05-06 17:12:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-06 17:12:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-06 17:12:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-06 17:12:33 DEBUG SClient4WPS:436 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:12:33 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=3fdd21cf-f0c5-482e-9c57-acb2c0740c46 -2016-05-06 17:12:33 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-05-06 17:12:33 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-05-06 17:12:33 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-05-06 17:12:33 DEBUG SClient4WPS:447 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - Process successful - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - - _______________________________________________ __ ____ ______________________________________ _______________ - - - - - - -_______________________ _____ __ _ _ _ _____ ___________________________________________________________________________ ______ ___ __ ____ ___ ___________________________________________________ -_____________________ _____ ___ __ _ _ __ _____ ___ __ _ ______________________________________________________________ _ ____ ____________________________________________________ -________________ _____ ______ _ _____ _ ____________ _____ _______________________________________________________ _______ _ ____________________________________________________ -______________________ ______ _____ __ ______________ ____ _______________________________________________ _________ __________ _ __ ___________________________________________________ -__________________ __ _ ____ ____ ___ ______ __ ____ ____ _ _ _____________________________________ _ ________ _______________ _ ________________________________________________ -__________________ __ _____ _ _ ___ ___ _ ______ _________ _ __ _ ____________________________________ __________ _____________ ______________ _______________________________ -___________________ _ ____ _ _ ___ ___ __ _____ ___ __ ___ __ _________________________________ ____________ ___________ _________ ________________________________ -____________________ ______ _ ___ ______________ ___ __ ___ _ ____ _ _____________________________________________ ________ _______ _________________________________ -_________________________ __ _ _ ______ ____ ___________ __ __ _ ______________________________________________ __________ _____ _________________________________ -________________________ _______ __ _ ___ _ ___ __ __ _ _________________________________________________ _____ _______________________________________ -___________________________ ________ __ __________ __ ______ _ __ _______________________________________ ______ ____________________________________ -____________________________ ______ _____ _____ __ _ ____ ____ _______________ ____________________________ _ _____________________________________ -_____________________________________ _____ _ ___ ______ ________ __ ___________ _____________________________ ___________________________________ -____________________________________ ____ _ _ ___________ _________ _______________________ _ ____________________________________ -___________________________________ _____ _ ________ ___________ ____________________________ ________________________________________ -________________________________ ____ _ __________ _______________ ________________________ __ ________________________________________ -_______________________________ ___ _ 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______________________ -__________ ________________ ___ __ ________ _ __________________________ ______________ __ -__________ ______________ ______ _ __________ _ __________________________ ___ ________________ -________ ____________________ ___ _ _______ ___________________________ ___ _ ___ ____ -___________ __________________ ________ _ ________ _____________________________ _ _ _ - ___________ ____________________ _____ ___________ __________________________________ __ - _ __ __________________ __ _ ___________ ___________________________________ ___ __ - ____ _________________ ___ _____________ _____________ ____________________ ____ __ _ -___ __________ _________________ __________________ ______________ _________________ ________ __ -____________ _ _ ______________ _________________ _______________ _________________ _____ ____ -____________ _ __________ ____________ ___________________ __________________ ____________________ ____ __ ___ -____________ _ _____________ _ 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_______________ -_______________________________________________ __ ____ ______________________________________ _______________ - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - id,csquarecode,x,y,z,time,fvalue -1,5918:100,-180,-90,0,0,0.0749916 -2,5917:209,-179,-90,0,0,0.0750201 -3,5917:208,-178,-90,0,0,0.0750201 -4,5917:207,-177,-90,0,0,0.0750416 -5,5917:206,-176,-90,0,0,0.0750488 -6,5917:205,-175,-90,0,0,0.0750558 -7,5917:104,-174,-90,0,0,0.0750702 -8,5917:103,-173,-90,0,0,0.0750773 -9,5917:102,-172,-90,0,0,0.0750843 -10,5917:101,-171,-90,0,0,0.0750843 -11,5917:100,-170,-90,0,0,0.0750915 -12,5916:209,-169,-90,0,0,0.0750987 -13,5916:208,-168,-90,0,0,0.0751059 -14,5916:207,-167,-90,0,0,0.0751128 -15,5916:206,-166,-90,0,0,0.0751059 -16,5916:205,-165,-90,0,0,0.0751059 -17,5916:104,-164,-90,0,0,0.0751059 -18,5916:103,-163,-90,0,0,0.0751128 -19,5916:102,-162,-90,0,0,0.0751128 -20,5916:101,-161,-90,0,0,0.07512 -21,5916:100,-160,-90,0,0,0.0751344 -22,5915:209,-159,-90,0,0,0.0751416 -23,5915:208,-158,-90,0,0,0.0751558 -24,5915:207,-157,-90,0,0,0.0751486 -25,5915:206,-156,-90,0,0,0.0751558 -26,5915:205,-155,-90,0,0,0.075163 -27,5915:104,-154,-90,0,0,0.0751486 -28,5915:103,-153,-90,0,0,0.075163 -29,5915:102,-152,-90,0,0,0.0751558 -30,5915:101,-151,-90,0,0,0.0751416 -31,5915:100,-150,-90,0,0,0.0751416 -32,5914:209,-149,-90,0,0,0.0751344 -33,5914:208,-148,-90,0,0,0.0751344 -34,5914:207,-147,-90,0,0,0.0751272 -35,5914:206,-146,-90,0,0,0.07512 -36,5914:205,-145,-90,0,0,0.07512 -37,5914:104,-144,-90,0,0,0.0751128 -38,5914:103,-143,-90,0,0,0.07512 -39,5914:102,-142,-90,0,0,0.0751128 -40,5914:101,-141,-90,0,0,0.0751128 -41,5914:100,-140,-90,0,0,0.07512 -42,5913:209,-139,-90,0,0,0.07512 -43,5913:208,-138,-90,0,0,0.0751272 -44,5913:207,-137,-90,0,0,0.07527 -45,5913:206,-136,-90,0,0,0.0758155 -46,5913:205,-135,-90,0,0,0.0776421 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-37878,1817:235,175,83,0,0,0.0762848 -37879,1817:236,176,83,0,0,0.0762918 -37880,1817:237,177,83,0,0,0.0762918 -37881,1817:238,178,83,0,0,0.0762848 -37882,1817:239,179,83,0,0,0.0762918 -37883,1818:130,180,83,0,0,0.0762775 -37884,7918:100,-180,90,0,0,0.0749916 -37885,7917:209,-179,90,0,0,0.0750201 -37886,7917:208,-178,90,0,0,0.0750201 -37887,7917:207,-177,90,0,0,0.0750416 -37888,7917:206,-176,90,0,0,0.0750488 -37889,7917:205,-175,90,0,0,0.0750558 -37890,7917:104,-174,90,0,0,0.0750702 -37891,7917:103,-173,90,0,0,0.0750773 -37892,7917:102,-172,90,0,0,0.0750843 -37893,7917:101,-171,90,0,0,0.0750843 -37894,7917:100,-170,90,0,0,0.0750915 -37895,7916:209,-169,90,0,0,0.0750987 -37896,7916:208,-168,90,0,0,0.0751059 -37897,7916:207,-167,90,0,0,0.0751128 -37898,7916:206,-166,90,0,0,0.0751059 -37899,7916:205,-165,90,0,0,0.0751059 -37900,7916:104,-164,90,0,0,0.0751059 -37901,7916:103,-163,90,0,0,0.0751128 -37902,7916:102,-162,90,0,0,0.0751128 -37903,7916:101,-161,90,0,0,0.07512 -37904,7916:100,-160,90,0,0,0.0751344 -37905,7915:209,-159,90,0,0,0.0751416 -37906,7915:208,-158,90,0,0,0.0751558 -37907,7915:207,-157,90,0,0,0.0751486 -37908,7915:206,-156,90,0,0,0.0751558 -37909,7915:205,-155,90,0,0,0.075163 -37910,7915:104,-154,90,0,0,0.0751486 -37911,7915:103,-153,90,0,0,0.075163 -37912,7915:102,-152,90,0,0,0.0751558 -37913,7915:101,-151,90,0,0,0.0751416 -37914,7915:100,-150,90,0,0,0.0751416 -37915,7914:209,-149,90,0,0,0.0751344 -37916,7914:208,-148,90,0,0,0.0751344 -37917,7914:207,-147,90,0,0,0.0751272 -37918,7914:206,-146,90,0,0,0.07512 -37919,7914:205,-145,90,0,0,0.07512 -37920,7914:104,-144,90,0,0,0.0751128 -37921,7914:103,-143,90,0,0,0.07512 -37922,7914:102,-142,90,0,0,0.0751128 -37923,7914:101,-141,90,0,0,0.0751128 -37924,7914:100,-140,90,0,0,0.07512 -37925,7913:209,-139,90,0,0,0.07512 -37926,7913:208,-138,90,0,0,0.0751272 -37927,7913:207,-137,90,0,0,0.07527 -37928,7913:206,-136,90,0,0,0.0758155 -37929,7913:205,-135,90,0,0,0.0776421 -37930,7913:104,-134,90,0,0,0.0779001 -37931,7911:100,-110,90,0,0,0.0832649 -37932,7910:209,-109,90,0,0,0.0880188 -37933,7910:206,-106,90,0,0,0.0759162 -37934,7910:205,-105,90,0,0,0.0753775 -37935,7910:104,-104,90,0,0,0.0768514 -37936,7910:103,-103,90,0,0,0.0810109 -37937,7906:101,-61,90,0,0,0.0753489 -37938,7906:100,-60,90,0,0,0.075163 -37939,7905:209,-59,90,0,0,0.0750201 -37940,7905:208,-58,90,0,0,0.074949 -37941,7905:207,-57,90,0,0,0.0749346 -37942,7905:206,-56,90,0,0,0.0749275 -37943,7905:205,-55,90,0,0,0.0749346 -37944,7905:104,-54,90,0,0,0.0749346 -37945,7905:103,-53,90,0,0,0.0749418 -37946,7905:102,-52,90,0,0,0.0749562 -37947,7905:101,-51,90,0,0,0.0749631 -37948,7905:100,-50,90,0,0,0.0749631 -37949,7904:209,-49,90,0,0,0.0749631 -37950,7904:208,-48,90,0,0,0.074949 -37951,7904:207,-47,90,0,0,0.0749703 -37952,7904:206,-46,90,0,0,0.0749988 -37953,7904:205,-45,90,0,0,0.0750273 -37954,7904:104,-44,90,0,0,0.0750201 -37955,7904:103,-43,90,0,0,0.0750201 -37956,7904:102,-42,90,0,0,0.0750131 -37957,7904:101,-41,90,0,0,0.0750201 -37958,7904:100,-40,90,0,0,0.0750345 -37959,7903:209,-39,90,0,0,0.0750345 -37960,7903:208,-38,90,0,0,0.0750345 -37961,7903:207,-37,90,0,0,0.0750345 -37962,7903:206,-36,90,0,0,0.0750345 -37963,7903:205,-35,90,0,0,0.0750416 -37964,7903:104,-34,90,0,0,0.0750345 -37965,7903:103,-33,90,0,0,0.0750345 -37966,7903:102,-32,90,0,0,0.0750416 -37967,7903:101,-31,90,0,0,0.0750488 -37968,7903:100,-30,90,0,0,0.0750488 -37969,7902:209,-29,90,0,0,0.0750488 -37970,7902:208,-28,90,0,0,0.0750345 -37971,7902:207,-27,90,0,0,0.0750201 -37972,7902:206,-26,90,0,0,0.0761183 -37973,7902:205,-25,90,0,0,0.0756715 -37974,7902:104,-24,90,0,0,0.0789397 -37975,1916:206,166,90,0,0,0.0752487 -37976,1916:207,167,90,0,0,0.075063 -37977,1916:208,168,90,0,0,0.0749846 -37978,1916:209,169,90,0,0,0.074899 -37979,1917:100,170,90,0,0,0.074892 -37980,1917:101,171,90,0,0,0.0748777 -37981,1917:102,172,90,0,0,0.0807894 -37982,1917:103,173,90,0,0,0.0878209 -37983,1917:104,174,90,0,0,0.087558 -37984,1917:205,175,90,0,0,0.0873776 -37985,1917:206,176,90,0,0,0.0863183 -37986,1917:207,177,90,0,0,0.0752844 -37987,1917:208,178,90,0,0,0.0748849 -37988,1917:209,179,90,0,0,0.074949 -37989,1918:100,180,90,0,0,0.0749916 - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/N3hZMGdVTWZWdU51OUtmNGlWNFVMUEVwMFptYVc5MGtHbWJQNStIS0N6Yz0 - The warnings from the underlying MaxEnt model - text/csv - - - http://data-d.d4science.org/K1E3VTZxSGFNMTl1OUtmNGlWNFVMRzVvV05iRzVtNjdHbWJQNStIS0N6Yz0 - ASCII Maps of the environmental layers for checking features aligments - text/csv - - - http://data-d.d4science.org/Y0V2dzVuWkR0WkZ1OUtmNGlWNFVMQnNxOUtEM2ZXODhHbWJQNStIS0N6Yz0 - World Thumbnail - image/png - - - http://data-d.d4science.org/SnNhQnBVSWpDczV1OUtmNGlWNFVMSkhnaEZrall3TWpHbWJQNStIS0N6Yz0 - ROC Curve - image/png - - - http://data-d.d4science.org/MGs1amU2VEVmVTF1OUtmNGlWNFVMSjlTc2xqOUJCVFVHbWJQNStIS0N6Yz0 - Omission-Commission Curve - image/png - - - http://data-d.d4science.org/MGs1amU2VEVmVTF1OUtmNGlWNFVMSGlZK3c0SVVFcjJHbWJQNStIS0N6Yz0 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - text/csv - - - - - - - - diff --git a/test.log.2 b/test.log.2 deleted file mode 100644 index c394b87..0000000 --- a/test.log.2 +++ /dev/null @@ -1,231708 +0,0 @@ -2016-04-26 11:30:19 DEBUG SClient4WPS:858 - WPS SUCCESS -2016-04-26 11:30:19 DEBUG SClient4WPS:883 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-04-26 11:30:19 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=50e8c29e-0f88-4433-ade0-be309b988429, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=50e8c29e-0f88-4433-ade0-be309b988429] -2016-04-26 11:30:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 11:30:19 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 11:30:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 11:30:19 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:Best Threshold -2016-04-26 11:30:19 DEBUG WPS2SM:315 - Conversion to SM Type->Title:Best threshold for transforming MaxEnt values into 0/1 probability assignments -2016-04-26 11:30:19 DEBUG WPS2SM:324 - Literal Output -2016-04-26 11:30:19 DEBUG WPS2SM:93 - WPS type: -2016-04-26 11:30:19 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 11:30:19 DEBUG WPS2SM:101 - Guessed default value: -2016-04-26 11:30:19 DEBUG SClient4WPS:932 - OutputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Best Threshold, description=Best threshold for transforming MaxEnt values into 0/1 probability assignments, typology=OBJECT] -2016-04-26 11:30:19 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:Estimated Prevalence -2016-04-26 11:30:19 DEBUG WPS2SM:315 - Conversion to SM Type->Title:The a posteriori estimated prevalence of the species -2016-04-26 11:30:19 DEBUG WPS2SM:324 - Literal Output -2016-04-26 11:30:19 DEBUG WPS2SM:93 - WPS type: -2016-04-26 11:30:19 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 11:30:19 DEBUG WPS2SM:101 - Guessed default value: -2016-04-26 11:30:19 DEBUG SClient4WPS:932 - OutputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Estimated Prevalence, description=The a posteriori estimated prevalence of the species, typology=OBJECT] -2016-04-26 11:30:19 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:Variables contributions -2016-04-26 11:30:19 DEBUG WPS2SM:315 - Conversion to SM Type->Title:The contribution of each variable to the MaxEnt values estimates -2016-04-26 11:30:19 DEBUG WPS2SM:324 - Literal Output -2016-04-26 11:30:19 DEBUG WPS2SM:93 - WPS type: -2016-04-26 11:30:19 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 11:30:19 DEBUG WPS2SM:101 - Guessed default value: -2016-04-26 11:30:19 DEBUG SClient4WPS:932 - OutputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Variables contributions, description=The contribution of each variable to the MaxEnt values estimates, typology=OBJECT] -2016-04-26 11:30:19 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:Variables Permutations Importance -2016-04-26 11:30:19 DEBUG WPS2SM:315 - Conversion to SM Type->Title:The importance of the permutations of the variables during the training -2016-04-26 11:30:19 DEBUG WPS2SM:324 - Literal Output -2016-04-26 11:30:19 DEBUG WPS2SM:93 - WPS type: -2016-04-26 11:30:19 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 11:30:19 DEBUG WPS2SM:101 - Guessed default value: -2016-04-26 11:30:19 DEBUG SClient4WPS:932 - OutputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Variables Permutations Importance, description=The importance of the permutations of the variables during the training, typology=OBJECT] -2016-04-26 11:30:19 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:ASCII Maps of the environmental layers for checking features aligments -2016-04-26 11:30:19 DEBUG WPS2SM:315 - Conversion to SM Type->Title:ASCII Maps of the environmental layers for checking features aligments -2016-04-26 11:30:19 DEBUG WPS2SM:331 - Complex Output -2016-04-26 11:30:19 DEBUG WPS2SM:200 - MimeType: application/d4science -2016-04-26 11:30:19 DEBUG WPS2SM:201 - Schema: null -2016-04-26 11:30:19 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 11:30:19 DEBUG SClient4WPS:932 - OutputParameter: FileParameter [mimeType=application/d4science, value=null, name=ASCII Maps of the environmental layers for checking features aligments, description=ASCII Maps of the environmental layers for checking features aligments, typology=FILE] -2016-04-26 11:30:19 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:OutputTable7 -2016-04-26 11:30:19 DEBUG WPS2SM:315 - Conversion to SM Type->Title:Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-04-26 11:30:19 DEBUG WPS2SM:331 - Complex Output -2016-04-26 11:30:19 DEBUG WPS2SM:200 - MimeType: text/csv -2016-04-26 11:30:19 DEBUG WPS2SM:201 - Schema: null -2016-04-26 11:30:19 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 11:30:19 DEBUG SClient4WPS:932 - OutputParameter: TabularParameter [tableName= , templates=[], name=OutputTable7, description=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], typology=TABULAR] -2016-04-26 11:30:19 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:non_deterministic_output -2016-04-26 11:30:19 DEBUG WPS2SM:315 - Conversion to SM Type->Title:NonDeterministicOutput -2016-04-26 11:30:19 DEBUG WPS2SM:331 - Complex Output -2016-04-26 11:30:19 DEBUG WPS2SM:200 - MimeType: text/xml; subtype=gml/2.1.2 -2016-04-26 11:30:19 DEBUG WPS2SM:201 - Schema: http://schemas.opengis.net/gml/2.1.2/feature.xsd -2016-04-26 11:30:19 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 11:30:19 DEBUG SClient4WPS:932 - OutputParameter: FileParameter [mimeType=text/xml; subtype=gml/2.1.2, value=null, name=non_deterministic_output, description=NonDeterministicOutput, typology=FILE] -2016-04-26 11:30:19 DEBUG SClient4WPS:419 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=50e8c29e-0f88-4433-ade0-be309b988429 -2016-04-26 11:30:19 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=50e8c29e-0f88-4433-ade0-be309b988429 -2016-04-26 11:30:19 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-04-26 11:30:19 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-04-26 11:30:19 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-04-26 11:30:20 DEBUG SClient4WPS:430 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - - - Process successful - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - - _____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ - - - - - - - -_____________________________________________ ________ _ ____ __ __ ___ __________ _______________________________________________________________________________________________________________________________________________________ ____________ _______ ____ ________ _____ _____________________________________________________________________________________________________ -______________________________________________ __________ _ __ _ __ _____ _ _______ _________________________________________________________________________________________________________________________________________________ ___ _____ ____________________ _________________________________________________________________________________________________________ -_________________________________________ __________ ______ ___ ___ __ ____ _ __________ _______ ____ __ _____________________________________________________________________________________________________________________________ _ ___ ________ ________________________________________________________________________________________________________ -_______________________________ _ _______ _ __ ______________ __ __ ____ _ __ __ __ ________ ______ __ ______ _ _____________________________________________________________________________________________________________________________ _ __ _ ___ ____ _________________________________________________________________________________________________ -________________________________ _ __________ ___________ __ _ __________ ___ ___________________ ___ __________ ______________________________________________________________________________________________________________ _______________ _ _ __ ________________________________________________________________________________________________________ -________________________________ __ __________ _________ ____ _______ __ _____ __ _________________________ _________ __ _____ ___________________________________________________________________________________ ___ _________________ __________________ __ _ _____________________________________________________________________________________________________ -____________________________________________ ____________ _________ _ __ ____________________________ _ ______ ______________________________________________________________________________________________ ___________________ ____________________ __ ___ __ ___________________________________________________________________________________________________ -________________________________________ _ _ _________ _______ ______ _____________ _______________ _________ _____ _ _ _________________________________________________________________________________ __________________ _____________________ ____ _____ ____ ________ ________________________________________________________________________________________ -____________________________________ ____ __ _________ _______ ______ ___________ ___ _______ _______ ___ _ __________________________________________________________________________ _ _________________ ______________________________ __ __________________________________ _____________________________________________________________ -_____________________________________ __ ____________ _____ ______ _ ___________ __ ______ ________ ____ ___ _______________________________________________________________________________________________ ____________________________ __ ________________________________________________________________________________________________ -____________________________________ ___ __________ _ __ _____ _____ ___ ____________ _ _______________ __ _____ __ _________________________________________________________________________ ____________________ __________________________ _ ____________________________ _ _____________________________________________________________ -_____________________________________ __ __ _________ _ __ ______ ________ ____ __________ _ __ _____ ____ ___ ___ _ ___________________________________________________________________ ______________________ ______________________ ____ __________ ___________ _____________________________________________________________ -______________________________________ __ ________ _ __ _ ___ ______ _____ _ ____ ______ _ ______ _ __ _______ ____ _________________________________________________________________ _______________________ ______________________ ___________________ _______________________________________________________________ -_______________________________________ _________ _ ___ ______ _________________________ __________ ____ ____ ___ _ __ _______________________________________________________________ _________________________ ___________________ ________________ ________________________________________________________________ -________________________________________ ___________ _ __ ______ _________ _________________ _____ ___ _____ ___ _________ _ __ __________________________________________________________________________________________ _________________ _______________ _________________________________________________________________ -___________________________________________________ _ _ __ ____________ ____________________________ ____ ______ _ ____ _ ____________________________________________________________________________________________ ____________ ____ __________________________________________________________________________________ -_________________________________________________ ___ _ ___ ____________ ___ ____ _____________________ ___ ___ _ ____________________________________________________________________________________________ ___________________ _________ __________________________________________________________________ -_________________________________________________ __ ___ ___ ___ ____ _______ ______ _ ___ ____ ______________________________________________________________________________________________ ________ ___________ __________________________________________________________________ -________________________________________________ ______________ ___ ___ _______ ___ ______ ___ _____ __ _________________________________________________________________________________________________ _________ __________ ___________________________________________________________________ -__________________________________________________ _ ___________________ _ __ _ __ ___ ___________________ _____ _ _ ________ ____ _ __ ________________________________________________________________________________ __________ ___ ___________________________________________________________________ -_____________________________________________________ _________________ _ ___ ____________________ ____ ___________ _ _ _ ______________________________________________________________________________ ____________ _______________________________________________________________________ -______________________________________________________ ________________ _ __ _ _____________ ______ _____ _ __ _____________ _ _________________________________ __________________________________________________________ ________________________________________________________________________ -________________________________________________________ _____________ ____ _____ __________ ____ __ ________ ________ ______________________________ _______________________________________________________ __ __________________________________________________________________________ -_________________________________________________________ ___ ____________ ________ _______ ______ _ ___________ _ ________________________________ ________________________________________________________ _______________________________________________________________________ -_________________________________________________________________________ __________ ___ _______ ____________ _______________ ___ ______________________ __________________________________________________________ ______________________________________________________________________ -_______________________________________________________________________ _ ________ _ __ _____________________ _ ____________________ __________________________________________________ ___ _______________________________________________________________________ -________________________________________________________________________ _______ _ _ _____________________ ___________________ _ ______________________________________________ ___ _______________________________________________________________________ -_____________________________________________________________________ _ _______ _ ___________________ ________________________ __ ___________________________________________________ ________ _________________________________________________________________________ -_____________________________________________________________________ __________ _ _________________ _______________________ _ ________________________________________________________ __ _____________________________________________________________________________ -_______________________________________________________________ ___ __ ______ _ __ _________________ ___________________________ _ ________________________________________________________ ________________________________________________________________________________ -________________________________________________________________ ________ ___ _____________________ ______________________________ _________________________________________________ ____ _______________________________________________________________________________ -______________________________________________________________ __ __________ _________________________ __________________________________________________________________________________ ____ _____________________________________________________________________________ -_____________________________________________________________ _ _ _______ _ __________________________ __ ___________________________________________________________________________________ ____________________________________________________________________________ -_____________________________________________________________ __________ __ __________________________ _______________________________________________________________________________________ ___________________________________________________________________________ -_____________________________________________________________ ___ __ __ _ __________________________ __________________________________________________________________________________________ ___________________________________________________________________________ -____________________________________________________________ __ _____ _ ___________________________ ________________________________________________________________________________ _______ ____ _________________ __________________________________________________ -__________________________________________________________ _ ___ _ __ ___________________________ ______________________________________________________________________ ___ _ _______________ _______________________________________________ -__________________________________________________________ _ ______ _ ________________________ ________________________________________________________________ ___ __ __ _____________ _____________________________________________ -_________________________________________________________ _______ __ ________________________ __ _________________________________________________________ __ __ _____________ _ __ ___________________________________________ -___________________________________________________________ ___ __________ ________________________ ________________________________________________________ _ __ ______________________ _________________________________________ -____________________________________________________ ___ __ _____________ _______________________ _______________________________________________________ ___ _______________ ________ ________________________________________ -_____________________________________________ ___ ___ ______________ ______________________ __ ___________________________________________________ _________ ________________ __________________________________________________ -___________________________________________ ___ ___ ________________ _ ____________________ ____________________________________________________ ____________ ____ _____________ __________________________________________________ -____________________________________ _____ _____ __________________ ___ ___________________ 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-_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ -_____________________________________________________________________________________________ ____ ________ ____________________________________________________________________________ ______________________________ - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - id,csquarecode,x,y,z,time,fvalue -1,5918:100:1,-180,-90,0,0,-0.00546026 -2,5917:209:2,-179.5,-90,0,0,-0.00546392 -3,5917:209:1,-179,-90,0,0,-0.00546511 -4,5917:208:2,-178.5,-90,0,0,-0.00546392 -5,5917:208:1,-178,-90,0,0,-0.00546511 -6,5917:207:2,-177.5,-90,0,0,-0.00546633 -7,5917:207:1,-177,-90,0,0,-0.00546878 -8,5917:206:2,-176.5,-90,0,0,-0.00547 -9,5917:206:1,-176,-90,0,0,-0.00547 -10,5917:205:2,-175.5,-90,0,0,-0.00547119 -11,5917:205:1,-175,-90,0,0,-0.00547119 -12,5917:104:2,-174.5,-90,0,0,-0.00547241 -13,5917:104:1,-174,-90,0,0,-0.00547364 -14,5917:103:2,-173.5,-90,0,0,-0.00547364 -15,5917:103:1,-173,-90,0,0,-0.00547486 -16,5917:102:2,-172.5,-90,0,0,-0.00547486 -17,5917:102:1,-172,-90,0,0,-0.00547605 -18,5917:101:2,-171.5,-90,0,0,-0.00547605 -19,5917:101:1,-171,-90,0,0,-0.00547605 -20,5917:100:2,-170.5,-90,0,0,-0.00547727 -21,5917:100:1,-170,-90,0,0,-0.00547727 -22,5916:209:2,-169.5,-90,0,0,-0.0054785 -23,5916:209:1,-169,-90,0,0,-0.0054785 -24,5916:208:2,-168.5,-90,0,0,-0.0054785 -25,5916:208:1,-168,-90,0,0,-0.00547972 -26,5916:207:2,-167.5,-90,0,0,-0.00547972 -27,5916:207:1,-167,-90,0,0,-0.00548091 -28,5916:206:2,-166.5,-90,0,0,-0.00548091 -29,5916:206:1,-166,-90,0,0,-0.00547972 -30,5916:205:2,-165.5,-90,0,0,-0.00547972 -31,5916:205:1,-165,-90,0,0,-0.00547972 -32,5916:104:2,-164.5,-90,0,0,-0.00547972 -33,5916:104:1,-164,-90,0,0,-0.00547972 -34,5916:103:2,-163.5,-90,0,0,-0.00547972 -35,5916:103:1,-163,-90,0,0,-0.00548091 -36,5916:102:2,-162.5,-90,0,0,-0.00548091 -37,5916:102:1,-162,-90,0,0,-0.00548091 -38,5916:101:2,-161.5,-90,0,0,-0.00548091 -39,5916:101:1,-161,-90,0,0,-0.00548214 -40,5916:100:2,-160.5,-90,0,0,-0.00548337 -41,5916:100:1,-160,-90,0,0,-0.00548459 -42,5915:209:2,-159.5,-90,0,0,-0.00548582 -43,5915:209:1,-159,-90,0,0,-0.00548582 -44,5915:208:2,-158.5,-90,0,0,-0.00548701 -45,5915:208:1,-158,-90,0,0,-0.00548824 -46,5915:207:2,-157.5,-90,0,0,-0.00548824 -47,5915:207:1,-157,-90,0,0,-0.00548701 -48,5915:206:2,-156.5,-90,0,0,-0.00548701 -49,5915:206:1,-156,-90,0,0,-0.00548824 -50,5915:205:2,-155.5,-90,0,0,-0.00548947 -51,5915:205:1,-155,-90,0,0,-0.00548947 -52,5915:104:2,-154.5,-90,0,0,-0.00548701 -53,5915:104:1,-154,-90,0,0,-0.00548701 -54,5915:103:2,-153.5,-90,0,0,-0.00548824 -55,5915:103:1,-153,-90,0,0,-0.00548947 -56,5915:102:2,-152.5,-90,0,0,-0.00548947 -57,5915:102:1,-152,-90,0,0,-0.00548824 -58,5915:101:2,-151.5,-90,0,0,-0.00548582 -59,5915:101:1,-151,-90,0,0,-0.00548582 -60,5915:100:2,-150.5,-90,0,0,-0.00548582 -61,5915:100:1,-150,-90,0,0,-0.00548582 -62,5914:209:2,-149.5,-90,0,0,-0.00548582 -63,5914:209:1,-149,-90,0,0,-0.00548459 -64,5914:208:2,-148.5,-90,0,0,-0.00548459 -65,5914:208:1,-148,-90,0,0,-0.00548459 -66,5914:207:2,-147.5,-90,0,0,-0.00548459 -67,5914:207:1,-147,-90,0,0,-0.00548337 -68,5914:206:2,-146.5,-90,0,0,-0.00548337 -69,5914:206:1,-146,-90,0,0,-0.00548214 -70,5914:205:2,-145.5,-90,0,0,-0.00548214 -71,5914:205:1,-145,-90,0,0,-0.00548214 -72,5914:104:2,-144.5,-90,0,0,-0.00548091 -73,5914:104:1,-144,-90,0,0,-0.00548091 -74,5914:103:2,-143.5,-90,0,0,-0.00548091 -75,5914:103:1,-143,-90,0,0,-0.00548214 -76,5914:102:2,-142.5,-90,0,0,-0.00548214 -77,5914:102:1,-142,-90,0,0,-0.00548091 -78,5914:101:2,-141.5,-90,0,0,-0.00547972 -79,5914:101:1,-141,-90,0,0,-0.00548091 -80,5914:100:2,-140.5,-90,0,0,-0.00548091 -81,5914:100:1,-140,-90,0,0,-0.00548214 -82,5913:209:2,-139.5,-90,0,0,-0.00548214 -83,5913:209:1,-139,-90,0,0,-0.00548214 -84,5913:208:2,-138.5,-90,0,0,-0.00548214 -85,5913:208:1,-138,-90,0,0,-0.00548337 -86,5913:207:2,-137.5,-90,0,0,-0.00548947 -87,5913:207:1,-137,-90,0,0,-0.00550777 -88,5913:206:2,-136.5,-90,0,0,-0.005536 -89,5913:206:1,-136,-90,0,0,-0.00560158 -90,5913:205:2,-135.5,-90,0,0,-0.00584441 -91,5913:205:1,-135,-90,0,0,-0.00592286 -92,5913:104:2,-134.5,-90,0,0,-0.00591106 -93,5913:104:1,-134,-90,0,0,-0.00596912 -94,5911:100:1,-110,-90,0,0,-0.00698226 -95,5910:209:2,-109.5,-90,0,0,-0.00750095 -96,5910:209:1,-109,-90,0,0,-0.00796395 -97,5910:208:2,-108.5,-90,0,0,-0.00791092 -98,5910:206:1,-106,-90,0,0,-0.005619 -99,5910:205:2,-105.5,-90,0,0,-0.00555077 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-124,5905:102:2,-52.5,-90,0,0,-0.005453 -125,5905:102:1,-52,-90,0,0,-0.00545423 -126,5905:101:2,-51.5,-90,0,0,-0.00545423 -127,5905:101:1,-51,-90,0,0,-0.00545541 -128,5905:100:2,-50.5,-90,0,0,-0.00545541 -129,5905:100:1,-50,-90,0,0,-0.00545541 -130,5904:209:2,-49.5,-90,0,0,-0.00545541 -131,5904:209:1,-49,-90,0,0,-0.00545541 -132,5904:208:2,-48.5,-90,0,0,-0.00545423 -133,5904:208:1,-48,-90,0,0,-0.005453 -134,5904:207:2,-47.5,-90,0,0,-0.005453 -135,5904:207:1,-47,-90,0,0,-0.00545663 -136,5904:206:2,-46.5,-90,0,0,-0.00545907 -137,5904:206:1,-46,-90,0,0,-0.00546148 -138,5904:205:2,-45.5,-90,0,0,-0.00546392 -139,5904:205:1,-45,-90,0,0,-0.00546633 -140,5904:104:2,-44.5,-90,0,0,-0.00546511 -141,5904:104:1,-44,-90,0,0,-0.00546511 -142,5904:103:2,-43.5,-90,0,0,-0.00546511 -143,5904:103:1,-43,-90,0,0,-0.00546511 -144,5904:102:2,-42.5,-90,0,0,-0.00546392 -145,5904:102:1,-42,-90,0,0,-0.00546392 -146,5904:101:2,-41.5,-90,0,0,-0.00546511 -147,5904:101:1,-41,-90,0,0,-0.00546511 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-1950,5815:455:3,-155,-85.5,0,0,-0.00548947 -1951,5815:354:4,-154.5,-85.5,0,0,-0.00548701 -1952,5815:354:3,-154,-85.5,0,0,-0.00548701 -1953,5815:353:4,-153.5,-85.5,0,0,-0.00548824 -1954,5815:353:3,-153,-85.5,0,0,-0.00548947 -1955,5815:352:4,-152.5,-85.5,0,0,-0.00548947 -1956,5815:352:3,-152,-85.5,0,0,-0.00548824 -1957,5815:351:4,-151.5,-85.5,0,0,-0.00548582 -1958,5815:351:3,-151,-85.5,0,0,-0.00548582 -1959,5815:350:4,-150.5,-85.5,0,0,-0.00548582 -1960,5815:350:3,-150,-85.5,0,0,-0.00548582 -1961,5814:459:4,-149.5,-85.5,0,0,-0.00548582 -1962,5814:459:3,-149,-85.5,0,0,-0.00548459 -1963,5814:458:4,-148.5,-85.5,0,0,-0.00548459 -1964,5814:458:3,-148,-85.5,0,0,-0.00548459 -1965,5814:457:4,-147.5,-85.5,0,0,-0.00548459 -1966,5814:457:3,-147,-85.5,0,0,-0.00548337 -1967,5814:456:4,-146.5,-85.5,0,0,-0.00548337 -1968,5814:456:3,-146,-85.5,0,0,-0.00548214 -1969,5814:455:4,-145.5,-85.5,0,0,-0.00548214 -1970,5814:455:3,-145,-85.5,0,0,-0.00548214 -1971,5814:354:4,-144.5,-85.5,0,0,-0.00548091 -1972,5814:354:3,-144,-85.5,0,0,-0.00548091 -1973,5814:353:4,-143.5,-85.5,0,0,-0.00548091 -1974,5814:353:3,-143,-85.5,0,0,-0.00548214 -1975,5814:352:4,-142.5,-85.5,0,0,-0.00548214 -1976,5814:352:3,-142,-85.5,0,0,-0.00548091 -1977,5814:351:4,-141.5,-85.5,0,0,-0.00547972 -1978,5814:351:3,-141,-85.5,0,0,-0.00548091 -1979,5814:350:4,-140.5,-85.5,0,0,-0.00548091 -1980,5814:350:3,-140,-85.5,0,0,-0.00548214 -1981,5813:459:4,-139.5,-85.5,0,0,-0.00548214 -1982,5813:459:3,-139,-85.5,0,0,-0.00548214 -1983,5813:458:4,-138.5,-85.5,0,0,-0.00548214 -1984,5813:458:3,-138,-85.5,0,0,-0.00548337 -1985,5813:457:4,-137.5,-85.5,0,0,-0.00548947 -1986,5813:457:3,-137,-85.5,0,0,-0.00550777 -1987,5813:456:4,-136.5,-85.5,0,0,-0.005536 -1988,5813:456:3,-136,-85.5,0,0,-0.00560158 -1989,5813:455:4,-135.5,-85.5,0,0,-0.00584441 -1990,5813:455:3,-135,-85.5,0,0,-0.00592286 -1991,5813:354:4,-134.5,-85.5,0,0,-0.00591106 -1992,5813:354:3,-134,-85.5,0,0,-0.00596912 -1993,5811:350:3,-110,-85.5,0,0,-0.00698226 -1994,5810:459:4,-109.5,-85.5,0,0,-0.00750095 -1995,5810:459:3,-109,-85.5,0,0,-0.00796395 -1996,5810:458:4,-108.5,-85.5,0,0,-0.00791092 -1997,5810:456:3,-106,-85.5,0,0,-0.005619 -1998,5810:455:4,-105.5,-85.5,0,0,-0.00555077 -1999,5810:455:3,-105,-85.5,0,0,-0.00552617 -2000,5810:354:4,-104.5,-85.5,0,0,-0.0055446 -2001,5810:354:3,-104,-85.5,0,0,-0.00578243 -2002,5810:353:4,-103.5,-85.5,0,0,-0.00623081 -2003,5810:353:3,-103,-85.5,0,0,-0.0065446 -2004,5810:352:4,-102.5,-85.5,0,0,-0.00661925 -2005,5806:351:4,-61.5,-85.5,0,0,-0.00552861 -2006,5806:351:3,-61,-85.5,0,0,-0.00552127 -2007,5806:350:4,-60.5,-85.5,0,0,-0.00550288 -2008,5806:350:3,-60,-85.5,0,0,-0.00548947 -2009,5805:459:4,-59.5,-85.5,0,0,-0.0054785 -2010,5805:459:3,-59,-85.5,0,0,-0.00546511 -2011,5805:458:4,-58.5,-85.5,0,0,-0.00545541 -2012,5805:458:3,-58,-85.5,0,0,-0.005453 -2013,5805:457:4,-57.5,-85.5,0,0,-0.00545179 -2014,5805:457:3,-57,-85.5,0,0,-0.00545057 -2015,5805:456:4,-56.5,-85.5,0,0,-0.00544935 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underlying MaxEnt model - text/csv - - - http://data-d.d4science.org/bmFjMVFHZlE5YzVxUmhYZ0pWd0RHanVtNm85MEhoZ2dHbWJQNStIS0N6Yz0 - ASCII Maps of the environmental layers for checking features aligments - text/csv - - - http://data-d.d4science.org/UVRiK1YzK3pJRjVxUmhYZ0pWd0RHdnpvQnhIYlZhbFRHbWJQNStIS0N6Yz0 - World Thumbnail - image/png - - - http://data-d.d4science.org/NzFkKzVNMnA3eU5xUmhYZ0pWd0RHcXM0aHArTHJoeExHbWJQNStIS0N6Yz0 - ROC Curve - image/png - - - http://data-d.d4science.org/MWt6NWUvdXZHRGhxUmhYZ0pWd0RHdkpPSVZrZmFJS2dHbWJQNStIS0N6Yz0 - Omission-Commission Curve - image/png - - - http://data-d.d4science.org/TDVlSlMrTjhYVEZxUmhYZ0pWd0RHZ0xvQ2IzT3ZwQTVHbWJQNStIS0N6Yz0 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - text/csv - - - - - - - - -2016-04-26 11:30:25 DEBUG SClient4WPS:946 - Process Executed -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: wps:ComplexData -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: #text -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: wps:ComplexData -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: #text -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: wps:ComplexData -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: ogr:FeatureCollection -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: gml:featureMember -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: ogr:Result -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Data- Value:http://data-d.d4science.org/bmFjMVFHZlE5YzVxUmhYZ0pWd0RHa1NTcjNZWjdXTnhHbWJQNStIS0N6Yz0 -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Description- Value:The warnings from the underlying MaxEnt model -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:MimeType- Value:text/csv -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: ogr:Result -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Data- Value:http://data-d.d4science.org/bmFjMVFHZlE5YzVxUmhYZ0pWd0RHanVtNm85MEhoZ2dHbWJQNStIS0N6Yz0 -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Description- Value:ASCII Maps of the environmental layers for checking features aligments -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:MimeType- Value:text/csv -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: ogr:Result -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Data- Value:http://data-d.d4science.org/UVRiK1YzK3pJRjVxUmhYZ0pWd0RHdnpvQnhIYlZhbFRHbWJQNStIS0N6Yz0 -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Description- Value:World Thumbnail -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:MimeType- Value:image/png -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: ogr:Result -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Data- Value:http://data-d.d4science.org/NzFkKzVNMnA3eU5xUmhYZ0pWd0RHcXM0aHArTHJoeExHbWJQNStIS0N6Yz0 -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Description- Value:ROC Curve -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:MimeType- Value:image/png -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: ogr:Result -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Data- Value:http://data-d.d4science.org/MWt6NWUvdXZHRGhxUmhYZ0pWd0RHdkpPSVZrZmFJS2dHbWJQNStIS0N6Yz0 -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Description- Value:Omission-Commission Curve -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:MimeType- Value:image/png -2016-04-26 11:30:25 DEBUG SClient4WPS:570 - Node Name: ogr:Result -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Data- Value:http://data-d.d4science.org/TDVlSlMrTjhYVEZxUmhYZ0pWd0RHZ0xvQ2IzT3ZwQTVHbWJQNStIS0N6Yz0 -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:Description- Value:Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-04-26 11:30:25 DEBUG SClient4WPS:537 - Node Name: d4science:MimeType- Value:text/csv -2016-04-26 11:30:25 DEBUG SClient4WPS:499 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/bmFjMVFHZlE5YzVxUmhYZ0pWd0RHa1NTcjNZWjdXTnhHbWJQNStIS0N6Yz0, description=The warnings from the underlying MaxEnt model, mimeType=text/csv] -2016-04-26 11:30:25 DEBUG SClient4WPS:499 - ResponseWPS Map: F1-->ResponseWPS [data=http://data-d.d4science.org/bmFjMVFHZlE5YzVxUmhYZ0pWd0RHanVtNm85MEhoZ2dHbWJQNStIS0N6Yz0, description=ASCII Maps of the environmental layers for checking features aligments, mimeType=text/csv] -2016-04-26 11:30:25 DEBUG SClient4WPS:499 - ResponseWPS Map: F2-->ResponseWPS [data=http://data-d.d4science.org/UVRiK1YzK3pJRjVxUmhYZ0pWd0RHdnpvQnhIYlZhbFRHbWJQNStIS0N6Yz0, description=World Thumbnail, mimeType=image/png] -2016-04-26 11:30:25 DEBUG SClient4WPS:499 - ResponseWPS Map: F3-->ResponseWPS [data=http://data-d.d4science.org/NzFkKzVNMnA3eU5xUmhYZ0pWd0RHcXM0aHArTHJoeExHbWJQNStIS0N6Yz0, description=ROC Curve, mimeType=image/png] -2016-04-26 11:30:25 DEBUG SClient4WPS:499 - ResponseWPS Map: F4-->ResponseWPS [data=http://data-d.d4science.org/MWt6NWUvdXZHRGhxUmhYZ0pWd0RHdkpPSVZrZmFJS2dHbWJQNStIS0N6Yz0, description=Omission-Commission Curve, mimeType=image/png] -2016-04-26 11:30:25 DEBUG SClient4WPS:499 - ResponseWPS Map: F5-->ResponseWPS [data=http://data-d.d4science.org/TDVlSlMrTjhYVEZxUmhYZ0pWd0RHZ0xvQ2IzT3ZwQTVHbWJQNStIS0N6Yz0, description=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], mimeType=text/csv] -2016-04-26 11:30:25 DEBUG SClient4WPS:994 - Adding OBJ:F0 -2016-04-26 11:30:25 DEBUG SClient4WPS:1000 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/bmFjMVFHZlE5YzVxUmhYZ0pWd0RHa1NTcjNZWjdXTnhHbWJQNStIS0N6Yz0, name=F0, description=The warnings from the underlying MaxEnt model, typology=OBJECT] -2016-04-26 11:30:25 DEBUG SClient4WPS:994 - Adding OBJ:F1 -2016-04-26 11:30:25 DEBUG SClient4WPS:1000 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/bmFjMVFHZlE5YzVxUmhYZ0pWd0RHanVtNm85MEhoZ2dHbWJQNStIS0N6Yz0, name=F1, description=ASCII Maps of the environmental layers for checking features aligments, typology=OBJECT] -2016-04-26 11:30:25 DEBUG SClient4WPS:994 - Adding OBJ:F2 -2016-04-26 11:30:25 DEBUG SClient4WPS:1000 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/UVRiK1YzK3pJRjVxUmhYZ0pWd0RHdnpvQnhIYlZhbFRHbWJQNStIS0N6Yz0, name=F2, description=World Thumbnail, typology=OBJECT] -2016-04-26 11:30:25 DEBUG SClient4WPS:994 - Adding OBJ:F3 -2016-04-26 11:30:25 DEBUG SClient4WPS:1000 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/NzFkKzVNMnA3eU5xUmhYZ0pWd0RHcXM0aHArTHJoeExHbWJQNStIS0N6Yz0, name=F3, description=ROC Curve, typology=OBJECT] -2016-04-26 11:30:25 DEBUG SClient4WPS:994 - Adding OBJ:F4 -2016-04-26 11:30:25 DEBUG SClient4WPS:1000 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/MWt6NWUvdXZHRGhxUmhYZ0pWd0RHdkpPSVZrZmFJS2dHbWJQNStIS0N6Yz0, name=F4, description=Omission-Commission Curve, typology=OBJECT] -2016-04-26 11:30:25 DEBUG SClient4WPS:994 - Adding OBJ:F5 -2016-04-26 11:30:25 DEBUG SClient4WPS:1000 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/TDVlSlMrTjhYVEZxUmhYZ0pWd0RHZ0xvQ2IzT3ZwQTVHbWJQNStIS0N6Yz0, name=F5, description=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], typology=OBJECT] -2016-04-26 11:30:25 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/bmFjMVFHZlE5YzVxUmhYZ0pWd0RHa1NTcjNZWjdXTnhHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=The warnings from the underlying MaxEnt model, getDescription()=The warnings from the underlying MaxEnt model, getResourceType()=FILE], F1=FileResource [url=http://data-d.d4science.org/bmFjMVFHZlE5YzVxUmhYZ0pWd0RHanVtNm85MEhoZ2dHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F1, getName()=ASCII Maps of the environmental layers for checking features aligments, getDescription()=ASCII Maps of the environmental layers for checking features aligments, getResourceType()=FILE], F2=ImagesResource [link=http://data-d.d4science.org/UVRiK1YzK3pJRjVxUmhYZ0pWd0RHdnpvQnhIYlZhbFRHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F2, getName()=World Thumbnail, getDescription()=World Thumbnail, getResourceType()=IMAGES], F3=ImagesResource [link=http://data-d.d4science.org/NzFkKzVNMnA3eU5xUmhYZ0pWd0RHcXM0aHArTHJoeExHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F3, getName()=ROC Curve, getDescription()=ROC Curve, getResourceType()=IMAGES], F4=ImagesResource [link=http://data-d.d4science.org/MWt6NWUvdXZHRGhxUmhYZ0pWd0RHdkpPSVZrZmFJS2dHbWJQNStIS0N6Yz0, mimeType=image/png, getResourceId()=F4, getName()=Omission-Commission Curve, getDescription()=Omission-Commission Curve, getResourceType()=IMAGES], F5=FileResource [url=http://data-d.d4science.org/TDVlSlMrTjhYVEZxUmhYZ0pWd0RHZ0xvQ2IzT3ZwQTVHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F5, getName()=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], getDescription()=Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-04-26 12:21:51 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-26 12:21:52 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-26 12:21:52 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-26 12:21:52 INFO SessionUtil:49 - no user found in session, use test user -2016-04-26 12:21:52 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:21:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:21:52 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-26 12:21:52 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4f4fdb34 -2016-04-26 12:21:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:21:52 INFO ASLSession:352 - Logging the entrance -2016-04-26 12:21:52 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-26 12:21:52 DEBUG TemplateModel:83 - 2016-04-26 12:21:52, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-26 12:21:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 12:21:52 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-26 12:21:54 INFO SessionUtil:49 - no user found in session, use test user -2016-04-26 12:21:54 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:21:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:21:54 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-26 12:21:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:21:54 INFO ASLSession:352 - Logging the entrance -2016-04-26 12:21:54 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-26 12:21:54 DEBUG TemplateModel:83 - 2016-04-26 12:21:54, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-26 12:21:54 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 12:21:54 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-26 12:21:54 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 127 ms -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-26 12:21:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-26 12:21:55 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-26 12:21:55 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 12:21:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-26 12:21:55 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@155a2e3e -2016-04-26 12:21:55 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@7a10d6f2 -2016-04-26 12:21:55 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1d8c804d -2016-04-26 12:21:55 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@427d40ff -2016-04-26 12:21:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 268 ms -2016-04-26 12:21:56 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-26 12:21:56 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-26 12:21:56 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-26 12:21:56 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-26 12:21:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 12:21:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 12:21:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 12:21:56 DEBUG DataMinerManagerServiceImpl:405 - getDataMinerWorkArea() -2016-04-26 12:21:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:21:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:21:56 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-26 12:21:56 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-26 12:21:56 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-26 12:21:56 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-26 12:21:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:21:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 12:21:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-26 12:21:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 22 ms -2016-04-26 12:21:56 DEBUG SClient4WPS:113 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-26 12:21:56 INFO SClient4WPS:118 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 12:21:56 DEBUG SClient4WPS:129 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-26 12:21:56 INFO StatWPSClientSession:84 - CONNECT -2016-04-26 12:21:56 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-26 12:21:56 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-26 12:21:56 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-26 12:21:56 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-26 12:21:56 DEBUG JCRRepository:271 - Initialize repository -2016-04-26 12:21:56 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-26 12:21:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-04-26 12:21:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 12:21:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-26 12:21:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 72 ms -2016-04-26 12:21:56 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-26 12:21:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 12:21:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:21:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:21:56 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-26 12:21:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:21:56 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-26 12:21:57 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 12:21:57 DEBUG SClient4WPS:250 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-26 12:21:57 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-26 12:21:57 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-26 12:21:57 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-26 12:21:57 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-26 12:21:57 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-26 12:21:57 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-26 12:21:57 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-26 12:21:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:21:57 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:21:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:21:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:21:57 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-26 12:21:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-26 12:21:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:21:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:21:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:21:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:21:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:21:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:21:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:21:57 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:21:57 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-26 12:21:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-26 12:21:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:21:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:21:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:21:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:21:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:21:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:21:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:21:57 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:21:57 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-26 12:21:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-26 12:21:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:21:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:21:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:21:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:21:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:21:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:21:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:21:58 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:21:58 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-26 12:21:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-26 12:21:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:21:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:21:58 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-26 12:21:58 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-26 12:21:58 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-26 12:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:21:58 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:21:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:21:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:21:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:21:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:21:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:21:58 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:21:58 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-26 12:21:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:21:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:21:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:21:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:21:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:21:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:21:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:21:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:21:58 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:21:58 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-26 12:21:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:21:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:21:58 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-26 12:21:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 167 msc 0 sec -2016-04-26 12:21:58 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-26 12:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-26 12:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:21:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 12:21:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-26 12:21:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-26 12:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-26 12:21:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 12:21:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-26 12:21:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-04-26 12:21:59 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-26 12:21:59 INFO ISClientConnector:82 - found only one RR, take it -2016-04-26 12:21:59 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-26 12:21:59 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-26 12:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-26 12:21:59 DEBUG StorageClient:517 - set scope: /gcube -2016-04-26 12:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-26 12:21:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 12:21:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-26 12:21:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-26 12:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-26 12:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-26 12:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-26 12:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:21:59 INFO WorkspaceExplorerServiceImpl:188 - end time - 356 msc 0 sec -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:22:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:22:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 12:22:04 INFO SClient4WPS:631 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-04-26 12:22:04 DEBUG SClient4WPS:264 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 12:22:04 INFO StatWPSClientSession:84 - CONNECT -2016-04-26 12:22:04 DEBUG SClient4WPS:285 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-04-26 12:22:04 DEBUG SClient4WPS:289 - WPSClient->Fetching Inputs -2016-04-26 12:22:04 DEBUG SClient4WPS:291 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-04-26 12:22:04 DEBUG SClient4WPS:291 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-04-26 12:22:04 DEBUG SClient4WPS:291 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-04-26 12:22:04 DEBUG SClient4WPS:291 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-04-26 12:22:04 DEBUG SClient4WPS:291 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-04-26 12:22:04 DEBUG SClient4WPS:296 - WPSClient->Fetching Outputs -2016-04-26 12:22:04 DEBUG SClient4WPS:298 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-04-26 12:22:04 DEBUG SClient4WPS:298 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-04-26 12:22:04 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 12:22:04 DEBUG WPS2SM:279 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-04-26 12:22:04 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-04-26 12:22:04 DEBUG WPS2SM:200 - MimeType: text/xml -2016-04-26 12:22:04 DEBUG WPS2SM:201 - Schema: null -2016-04-26 12:22:04 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 12:22:04 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-04-26 12:22:04 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsTable -2016-04-26 12:22:04 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:22:04 DEBUG SClient4WPS:646 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-04-26 12:22:04 DEBUG WPS2SM:254 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-04-26 12:22:04 DEBUG WPS2SM:93 - WPS type: -2016-04-26 12:22:04 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 12:22:04 DEBUG WPS2SM:101 - Guessed default value: -2016-04-26 12:22:04 DEBUG WPS2SM:111 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-04-26 12:22:04 DEBUG WPS2SM:112 - Machter find: true -2016-04-26 12:22:04 DEBUG WPS2SM:113 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-04-26 12:22:04 DEBUG WPS2SM:114 - Machter start: 31 -2016-04-26 12:22:04 DEBUG WPS2SM:115 - Machter end: 103 -2016-04-26 12:22:04 DEBUG WPS2SM:116 - Machter Group Count: 2 -2016-04-26 12:22:04 DEBUG WPS2SM:118 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-04-26 12:22:04 DEBUG WPS2SM:121 - Matcher separator: | -2016-04-26 12:22:04 DEBUG WPS2SM:290 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-04-26 12:22:04 DEBUG WPS2SM:291 - Conversion to SM Type->Name:FeaturesColumnNames -2016-04-26 12:22:04 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:22:04 DEBUG SClient4WPS:646 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-04-26 12:22:04 DEBUG WPS2SM:254 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-04-26 12:22:04 DEBUG WPS2SM:93 - WPS type: -2016-04-26 12:22:04 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 12:22:04 DEBUG WPS2SM:101 - Guessed default value: OccCluster_ -2016-04-26 12:22:04 DEBUG WPS2SM:290 - Conversion to SM Type->Title:table name of the resulting distribution -2016-04-26 12:22:04 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-04-26 12:22:04 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:22:04 DEBUG SClient4WPS:646 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-04-26 12:22:04 DEBUG WPS2SM:254 - Conversion to SM Type->epsilon is a Literal Input -2016-04-26 12:22:04 DEBUG WPS2SM:93 - WPS type: -2016-04-26 12:22:04 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-04-26 12:22:04 DEBUG WPS2SM:101 - Guessed default value: 10 -2016-04-26 12:22:04 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-04-26 12:22:04 DEBUG WPS2SM:291 - Conversion to SM Type->Name:epsilon -2016-04-26 12:22:04 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:22:04 DEBUG SClient4WPS:646 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-04-26 12:22:04 DEBUG WPS2SM:254 - Conversion to SM Type->min_points is a Literal Input -2016-04-26 12:22:04 DEBUG WPS2SM:93 - WPS type: -2016-04-26 12:22:04 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-04-26 12:22:04 DEBUG WPS2SM:101 - Guessed default value: 1 -2016-04-26 12:22:04 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-04-26 12:22:04 DEBUG WPS2SM:291 - Conversion to SM Type->Name:min_points -2016-04-26 12:22:04 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:22:04 DEBUG SClient4WPS:646 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-04-26 12:22:04 DEBUG SClient4WPS:650 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:22:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:22:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:22:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:22:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:22:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:22:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:22:04 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:22:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:22:04 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:22:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:22:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:22:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:22:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:22:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:22:04 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:22:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-04-26 12:22:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-04-26 12:22:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:22:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:22:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:22:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:22:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:22:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:22:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:22:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:22:04 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:22:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:22:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:22:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:22:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:22:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:22:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:22:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:22:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:22:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:22:04 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:22:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:22:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:22:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:22:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:22:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:22:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:22:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:22:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:22:05 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-26 12:22:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:22:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:22:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:22:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-04-26 12:22:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-04-26 12:22:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-04-26 12:22:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-04-26 12:22:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-04-26 12:22:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-04-26 12:22:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-04-26 12:22:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-04-26 12:22:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 228 msc 0 sec -2016-04-26 12:22:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-04-26 12:22:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:22:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:23:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:23:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:24:00 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 12:24:00 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 12:24:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:24:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:24:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:24:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:00 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:00 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 12:24:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:24:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:24:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:24:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:00 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:01 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 12:24:01 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 12:24:01 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-04-26 12:24:01 DEBUG ServiceEngine:306 - get() - start -2016-04-26 12:24:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 12:24:01 DEBUG BucketCoding:42 - coding name done -2016-04-26 12:24:01 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-04-26 12:24:01 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-04-26 12:24:01 DEBUG OperationManager:67 - connection(boolean) - start -2016-04-26 12:24:01 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-04-26 12:24:01 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-04-26 12:24:01 DEBUG OperationFactory:97 - getOperation(String) - end -2016-04-26 12:24:01 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-04-26 12:24:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 12:24:01 DEBUG BucketCoding:42 - coding name done -2016-04-26 12:24:01 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-04-26 12:24:01 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-04-26 12:24:01 DEBUG MongoIO:77 - open mongo connection -2016-04-26 12:24:01 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-04-26 12:24:01 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:01 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:01 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:01 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@af8a0e67, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17b22387, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@303a8038, socketFactory=javax.net.DefaultSocketFactory@50b7f544, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-04-26 12:24:01 INFO MongoIO:106 - new mongo connection pool opened -2016-04-26 12:24:01 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-04-26 12:24:01 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:115477}] to mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1702446, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:01 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-04-26 12:24:01 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:01 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:01 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1711190}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1384745, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:01 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:01 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1424090}] to mongo4-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1483833, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-04-26 12:24:01 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2010594}] to mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1295591, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-04-26 12:24:01 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1711191}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1711191}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG command:56 - Command execution completed -2016-04-26 12:24:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1711191}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG command:56 - Command execution completed -2016-04-26 12:24:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1711191}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG command:56 - Command execution completed -2016-04-26 12:24:01 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-04-26 12:24:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1711191}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG command:56 - Command execution completed -2016-04-26 12:24:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1711191}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:01 DEBUG command:56 - Command execution completed -2016-04-26 12:24:01 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1711191}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:02 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-04-26 12:24:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:24:02 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:24:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:24:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:24:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-26 12:24:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:24:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:02 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 12:24:02 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 12:24:02 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-04-26 12:24:02 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-04-26 12:24:02 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-26 12:24:02 INFO WorkspaceExplorerServiceImpl:188 - end time - 54 msc 0 sec -2016-04-26 12:24:02 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-04-26 12:24:02 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-04-26 12:24:02 DEBUG query:56 - Query completed -2016-04-26 12:24:02 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 7 objects -2016-04-26 12:24:02 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2010594} -2016-04-26 12:24:02 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:115477} -2016-04-26 12:24:02 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1424090} -2016-04-26 12:24:02 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1711191}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-04-26 12:24:02 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1711191} -2016-04-26 12:24:02 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1711190} -2016-04-26 12:24:02 INFO MongoIO:508 - Mongo has been closed -2016-04-26 12:24:02 INFO DefaultMongoClient:1329 - getFolderTotalVolume 130827 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-04-26 12:24:02 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-04-26 12:24:02 INFO WorkspaceExplorerServiceImpl:503 - returning size: 130827 -2016-04-26 12:24:03 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 12:24:03 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 12:24:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:24:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:24:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:24:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:03 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:03 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 12:24:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:24:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-26 12:24:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:24:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:03 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:03 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 12:24:03 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 12:24:03 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-04-26 12:24:03 DEBUG ServiceEngine:306 - get() - start -2016-04-26 12:24:03 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 12:24:03 DEBUG BucketCoding:42 - coding name done -2016-04-26 12:24:03 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-04-26 12:24:03 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-04-26 12:24:03 DEBUG OperationManager:67 - connection(boolean) - start -2016-04-26 12:24:03 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-04-26 12:24:03 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-04-26 12:24:03 DEBUG OperationFactory:97 - getOperation(String) - end -2016-04-26 12:24:03 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-04-26 12:24:03 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 12:24:03 DEBUG BucketCoding:42 - coding name done -2016-04-26 12:24:03 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-04-26 12:24:03 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-04-26 12:24:03 DEBUG MongoIO:77 - open mongo connection -2016-04-26 12:24:03 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-04-26 12:24:03 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:03 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:03 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:03 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@af8a0e67, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17b22387, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@303a8038, socketFactory=javax.net.DefaultSocketFactory@50b7f544, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-04-26 12:24:03 INFO MongoIO:106 - new mongo connection pool opened -2016-04-26 12:24:03 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-04-26 12:24:03 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:115478}] to mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1452335, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:03 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-04-26 12:24:03 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:03 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:03 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2010595}] to mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1711192}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=998291, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:03 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1305998, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:03 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:03 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1424091}] to mongo4-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1375541, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-04-26 12:24:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:24:03 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:24:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:24:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:03 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:03 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1711193}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1711193}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG command:56 - Command execution completed -2016-04-26 12:24:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1711193}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG command:56 - Command execution completed -2016-04-26 12:24:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1711193}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG command:56 - Command execution completed -2016-04-26 12:24:03 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-04-26 12:24:03 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1711193}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:24:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:24:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:24:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:03 DEBUG command:56 - Command execution completed -2016-04-26 12:24:03 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:03 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1711193}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 DEBUG command:56 - Command execution completed -2016-04-26 12:24:03 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1711193}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:03 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 12:24:03 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 12:24:03 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-04-26 12:24:03 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-04-26 12:24:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 43 msc 0 sec -2016-04-26 12:24:03 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 12:24:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-04-26 12:24:03 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-26 12:24:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-04-26 12:24:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-04-26 12:24:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-04-26 12:24:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-04-26 12:24:04 DEBUG query:56 - Query completed -2016-04-26 12:24:04 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-04-26 12:24:04 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2010595} -2016-04-26 12:24:04 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:115478} -2016-04-26 12:24:04 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1424091} -2016-04-26 12:24:04 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1711193}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-04-26 12:24:04 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1711193} -2016-04-26 12:24:04 INFO MongoIO:508 - Mongo has been closed -2016-04-26 12:24:04 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1711192} -2016-04-26 12:24:04 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-04-26 12:24:04 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-04-26 12:24:04 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-04-26 12:24:04 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 12:24:04 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 12:24:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:24:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-26 12:24:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:24:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:04 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:04 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 12:24:04 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 12:24:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:24:04 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:24:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:24:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:24:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:24:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:24:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:04 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:04 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:04 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 12:24:04 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 12:24:04 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 12:24:04 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-04-26 12:24:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:24:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:24:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 12:24:05 DEBUG DataMinerManagerServiceImpl:387 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-04-26 12:24:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:05 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:05 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 12:24:05 DEBUG ServiceEngine:193 - get() - start -2016-04-26 12:24:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 12:24:05 DEBUG BucketCoding:42 - coding name done -2016-04-26 12:24:05 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-04-26 12:24:05 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-04-26 12:24:05 DEBUG OperationManager:67 - connection(boolean) - start -2016-04-26 12:24:05 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-04-26 12:24:05 INFO OperationFactory:39 - getOperation(String) - start download -2016-04-26 12:24:05 DEBUG OperationFactory:97 - getOperation(String) - end -2016-04-26 12:24:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 12:24:05 DEBUG BucketCoding:42 - coding name done -2016-04-26 12:24:05 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 12:24:05 DEBUG Operation:173 - get(String) - start -2016-04-26 12:24:05 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-04-26 12:24:05 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-04-26 12:24:05 DEBUG MongoIO:77 - open mongo connection -2016-04-26 12:24:05 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-04-26 12:24:05 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:05 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:05 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@af8a0e67, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17b22387, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@303a8038, socketFactory=javax.net.DefaultSocketFactory@50b7f544, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-04-26 12:24:05 INFO MongoIO:106 - new mongo connection pool opened -2016-04-26 12:24:05 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:115480}] to mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1194019, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:05 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-04-26 12:24:05 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:05 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2010596}] to mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=956847, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1711194}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1297757, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:05 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1424092}] to mongo4-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1304792, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1711195}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-04-26 12:24:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 12:24:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 12:24:05 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG query:56 - Query completed -2016-04-26 12:24:05 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-04-26 12:24:05 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-04-26 12:24:05 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-04-26 12:24:05 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG update:56 - Update completed -2016-04-26 12:24:05 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1711195}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG query:56 - Query completed -2016-04-26 12:24:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:24:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:24:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:24:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:24:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:24:05 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:24:05 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 12:24:05 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-04-26 12:24:05 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-04-26 12:24:05 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-04-26 12:24:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 12:24:05 DEBUG BucketCoding:42 - coding name done -2016-04-26 12:24:05 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-04-26 12:24:05 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-04-26 12:24:05 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-04-26 12:24:05 DEBUG OperationManager:67 - connection(boolean) - start -2016-04-26 12:24:05 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-04-26 12:24:05 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-04-26 12:24:05 DEBUG OperationFactory:97 - getOperation(String) - end -2016-04-26 12:24:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 12:24:05 DEBUG BucketCoding:42 - coding name done -2016-04-26 12:24:05 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-04-26 12:24:05 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-04-26 12:24:05 DEBUG MongoIO:77 - open mongo connection -2016-04-26 12:24:05 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-04-26 12:24:05 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:05 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:05 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@af8a0e67, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17b22387, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@303a8038, socketFactory=javax.net.DefaultSocketFactory@50b7f544, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-04-26 12:24:05 INFO MongoIO:106 - new mongo connection pool opened -2016-04-26 12:24:05 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1711196}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1076370, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:05 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-04-26 12:24:05 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:05 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 12:24:05 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2010597}] to mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=899531, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:115481}] to mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1332286, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1424093}] to mongo4-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2858811, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 12:24:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}] -2016-04-26 12:24:05 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1711197}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1711197}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1711197}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1711197}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 12:24:05 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 12:24:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1711197}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1711197}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG command:56 - Command execution completed -2016-04-26 12:24:05 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 12:24:05 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1711197}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 12:24:05 DEBUG query:56 - Query completed -2016-04-26 12:24:05 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-04-26 12:24:05 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2010597} -2016-04-26 12:24:05 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:115481} -2016-04-26 12:24:05 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1424093} -2016-04-26 12:24:05 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1711197}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-04-26 12:24:05 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1711197} -2016-04-26 12:24:05 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1711196} -2016-04-26 12:24:05 INFO MongoIO:508 - Mongo has been closed -2016-04-26 12:24:05 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 12:24:06 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-04-26 12:24:06 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-04-26 12:24:06 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-04-26 12:24:06 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-04-26 12:24:06 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-04-26 12:24:06 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-04-26 12:24:06 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-04-26 12:24:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 12:24:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-04-26 12:24:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 12:24:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-04-26 12:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2010596} -2016-04-26 12:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:115480} -2016-04-26 12:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1424092} -2016-04-26 12:24:11 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1711195}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-04-26 12:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1711195} -2016-04-26 12:24:11 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1711194} -2016-04-26 12:24:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:24:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:24:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 12:24:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 12:24:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 12:24:44 DEBUG DataMinerManagerServiceImpl:149 - StartComputation(): [computationTitle=Dbscan-2016-04-26 12:22, computationDescription=Dbscan-2016-04-26 12:22, operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-04-26 12:24:44 DEBUG SClient4WPS:264 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 12:24:44 INFO StatWPSClientSession:84 - CONNECT -2016-04-26 12:24:45 DEBUG SClient4WPS:285 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-04-26 12:24:45 DEBUG SClient4WPS:289 - WPSClient->Fetching Inputs -2016-04-26 12:24:45 DEBUG SClient4WPS:291 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-04-26 12:24:45 DEBUG SClient4WPS:291 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-04-26 12:24:45 DEBUG SClient4WPS:291 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-04-26 12:24:45 DEBUG SClient4WPS:291 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-04-26 12:24:45 DEBUG SClient4WPS:291 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-04-26 12:24:45 DEBUG SClient4WPS:296 - WPSClient->Fetching Outputs -2016-04-26 12:24:45 DEBUG SClient4WPS:298 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-04-26 12:24:45 DEBUG SClient4WPS:298 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-04-26 12:24:45 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 12:24:45 DEBUG WPS2SM:279 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-04-26 12:24:45 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-04-26 12:24:45 DEBUG WPS2SM:200 - MimeType: text/xml -2016-04-26 12:24:45 DEBUG WPS2SM:201 - Schema: null -2016-04-26 12:24:45 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 12:24:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-04-26 12:24:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsTable -2016-04-26 12:24:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:24:45 DEBUG SClient4WPS:681 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-04-26 12:24:45 DEBUG WPS2SM:254 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-04-26 12:24:45 DEBUG WPS2SM:93 - WPS type: -2016-04-26 12:24:45 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 12:24:45 DEBUG WPS2SM:101 - Guessed default value: -2016-04-26 12:24:45 DEBUG WPS2SM:111 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-04-26 12:24:45 DEBUG WPS2SM:112 - Machter find: true -2016-04-26 12:24:45 DEBUG WPS2SM:113 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-04-26 12:24:45 DEBUG WPS2SM:114 - Machter start: 31 -2016-04-26 12:24:45 DEBUG WPS2SM:115 - Machter end: 103 -2016-04-26 12:24:45 DEBUG WPS2SM:116 - Machter Group Count: 2 -2016-04-26 12:24:45 DEBUG WPS2SM:118 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-04-26 12:24:45 DEBUG WPS2SM:121 - Matcher separator: | -2016-04-26 12:24:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-04-26 12:24:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:FeaturesColumnNames -2016-04-26 12:24:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:24:45 DEBUG SClient4WPS:681 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-04-26 12:24:45 DEBUG WPS2SM:254 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-04-26 12:24:45 DEBUG WPS2SM:93 - WPS type: -2016-04-26 12:24:45 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 12:24:45 DEBUG WPS2SM:101 - Guessed default value: OccCluster_ -2016-04-26 12:24:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:table name of the resulting distribution -2016-04-26 12:24:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-04-26 12:24:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:24:45 DEBUG SClient4WPS:681 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-04-26 12:24:45 DEBUG WPS2SM:254 - Conversion to SM Type->epsilon is a Literal Input -2016-04-26 12:24:45 DEBUG WPS2SM:93 - WPS type: -2016-04-26 12:24:45 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-04-26 12:24:45 DEBUG WPS2SM:101 - Guessed default value: 10 -2016-04-26 12:24:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-04-26 12:24:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:epsilon -2016-04-26 12:24:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:24:45 DEBUG SClient4WPS:681 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-04-26 12:24:45 DEBUG WPS2SM:254 - Conversion to SM Type->min_points is a Literal Input -2016-04-26 12:24:45 DEBUG WPS2SM:93 - WPS type: -2016-04-26 12:24:45 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-04-26 12:24:45 DEBUG WPS2SM:101 - Guessed default value: 1 -2016-04-26 12:24:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-04-26 12:24:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:min_points -2016-04-26 12:24:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 12:24:45 DEBUG SClient4WPS:681 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-04-26 12:24:45 DEBUG SClient4WPS:689 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-04-26 12:24:45 DEBUG SClient4WPS:689 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymin -2016-04-26 12:24:45 DEBUG SClient4WPS:689 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-04-26 12:24:45 DEBUG SClient4WPS:689 - UserInputs= key:epsilon, value=10 -2016-04-26 12:24:45 DEBUG SClient4WPS:689 - UserInputs= key:min_points, value=1 -2016-04-26 12:24:45 DEBUG SClient4WPS:748 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-04-26 12:24:45 DEBUG SClient4WPS:731 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymin -2016-04-26 12:24:45 DEBUG SClient4WPS:731 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-04-26 12:24:45 DEBUG SClient4WPS:731 - Configuring Literal: epsilon to: 10 -2016-04-26 12:24:45 DEBUG SClient4WPS:731 - Configuring Literal: min_points to: 1 -2016-04-26 12:24:45 INFO StatWPSClientSession:84 - CONNECT -2016-04-26 12:24:46 DEBUG SClient4WPS:380 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymin - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-04-26 12:24:46 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-04-26 12:24:46 DEBUG SClient4WPS:399 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=785cde75-04a6-467d-bb28-a4afafb2e1fd -2016-04-26 12:24:46 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 12:24:46 DEBUG SClient4WPS:768 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=785cde75-04a6-467d-bb28-a4afafb2e1fd -2016-04-26 12:24:46 DEBUG SClient4WPS:695 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=785cde75-04a6-467d-bb28-a4afafb2e1fd -2016-04-26 12:24:46 DEBUG SClient4WPS:706 - ComputationId: ComputationId [id=785cde75-04a6-467d-bb28-a4afafb2e1fd, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=785cde75-04a6-467d-bb28-a4afafb2e1fd] -2016-04-26 12:24:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:24:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:24:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 12:24:56 DEBUG SClient4WPS:784 - GetComputationStatus(): ComputationId=ComputationId [id=785cde75-04a6-467d-bb28-a4afafb2e1fd, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=785cde75-04a6-467d-bb28-a4afafb2e1fd] -2016-04-26 12:24:56 INFO StatWPSClientSession:114 - CONNECT -2016-04-26 12:24:56 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-04-26 12:24:56 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=785cde75-04a6-467d-bb28-a4afafb2e1fd -2016-04-26 12:24:56 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-04-26 12:24:56 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-04-26 12:24:56 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-04-26 12:24:56 DEBUG SClient4WPS:800 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymin,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/ZjZHUjJUYlNTQTlxUmhYZ0pWd0RHdGh2YWVkNkduZnVHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-04-26 12:24:56 DEBUG SClient4WPS:858 - WPS SUCCESS -2016-04-26 12:24:56 DEBUG SClient4WPS:883 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-04-26 12:24:56 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=785cde75-04a6-467d-bb28-a4afafb2e1fd, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=785cde75-04a6-467d-bb28-a4afafb2e1fd] -2016-04-26 12:24:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:24:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:24:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 12:24:56 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:OutputTable -2016-04-26 12:24:56 DEBUG WPS2SM:315 - Conversion to SM Type->Title:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-04-26 12:24:56 DEBUG WPS2SM:331 - Complex Output -2016-04-26 12:24:56 DEBUG WPS2SM:200 - MimeType: text/csv -2016-04-26 12:24:56 DEBUG WPS2SM:201 - Schema: null -2016-04-26 12:24:56 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 12:24:56 DEBUG SClient4WPS:932 - OutputParameter: TabularParameter [tableName= , templates=[], name=OutputTable, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=TABULAR] -2016-04-26 12:24:56 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:non_deterministic_output -2016-04-26 12:24:56 DEBUG WPS2SM:315 - Conversion to SM Type->Title:NonDeterministicOutput -2016-04-26 12:24:56 DEBUG WPS2SM:331 - Complex Output -2016-04-26 12:24:56 DEBUG WPS2SM:200 - MimeType: text/xml; subtype=gml/2.1.2 -2016-04-26 12:24:56 DEBUG WPS2SM:201 - Schema: http://schemas.opengis.net/gml/2.1.2/feature.xsd -2016-04-26 12:24:56 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 12:24:56 DEBUG SClient4WPS:932 - OutputParameter: FileParameter [mimeType=text/xml; subtype=gml/2.1.2, value=null, name=non_deterministic_output, description=NonDeterministicOutput, typology=FILE] -2016-04-26 12:24:56 DEBUG SClient4WPS:419 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=785cde75-04a6-467d-bb28-a4afafb2e1fd -2016-04-26 12:24:56 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=785cde75-04a6-467d-bb28-a4afafb2e1fd -2016-04-26 12:24:56 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-04-26 12:24:56 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-04-26 12:24:56 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-04-26 12:24:56 DEBUG SClient4WPS:430 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymin,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/ZjZHUjJUYlNTQTlxUmhYZ0pWd0RHdGh2YWVkNkduZnVHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-04-26 12:24:56 DEBUG SClient4WPS:946 - Process Executed -2016-04-26 12:24:56 DEBUG SClient4WPS:570 - Node Name: wps:ComplexData -2016-04-26 12:24:56 DEBUG SClient4WPS:570 - Node Name: #text -2016-04-26 12:24:56 DEBUG SClient4WPS:570 - Node Name: wps:ComplexData -2016-04-26 12:24:56 DEBUG SClient4WPS:570 - Node Name: ogr:FeatureCollection -2016-04-26 12:24:56 DEBUG SClient4WPS:570 - Node Name: gml:featureMember -2016-04-26 12:24:56 DEBUG SClient4WPS:570 - Node Name: ogr:Result -2016-04-26 12:24:56 DEBUG SClient4WPS:537 - Node Name: d4science:Data- Value:http://data-d.d4science.org/ZjZHUjJUYlNTQTlxUmhYZ0pWd0RHdGh2YWVkNkduZnVHbWJQNStIS0N6Yz0 -2016-04-26 12:24:56 DEBUG SClient4WPS:537 - Node Name: d4science:Description- Value:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-04-26 12:24:56 DEBUG SClient4WPS:537 - Node Name: d4science:MimeType- Value:text/csv -2016-04-26 12:24:56 DEBUG SClient4WPS:499 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/ZjZHUjJUYlNTQTlxUmhYZ0pWd0RHdGh2YWVkNkduZnVHbWJQNStIS0N6Yz0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], mimeType=text/csv] -2016-04-26 12:24:56 DEBUG SClient4WPS:994 - Adding OBJ:F0 -2016-04-26 12:24:56 DEBUG SClient4WPS:1000 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/ZjZHUjJUYlNTQTlxUmhYZ0pWd0RHdGh2YWVkNkduZnVHbWJQNStIS0N6Yz0, name=F0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=OBJECT] -2016-04-26 12:24:56 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/ZjZHUjJUYlNTQTlxUmhYZ0pWd0RHdGh2YWVkNkduZnVHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getDescription()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-04-26 12:25:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:25:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:26:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:26:27 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:27:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:27:22 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:28:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:28:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:29:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:29:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:30:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:30:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:31:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:31:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:31:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:32:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:32:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:33:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:33:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:34:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 12:34:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 12:35:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:35:37 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-26 12:36:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:36:32 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:37:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:37:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:38:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:38:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:39:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-26 12:39:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-26 12:40:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:40:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:41:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 12:41:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 12:42:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 12:42:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 12:42:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 12:42:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 12:43:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:43:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:44:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:44:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:45:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:45:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:46:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 12:46:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 12:47:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:47:32 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:48:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 12:48:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:49:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 12:49:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:50:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-04-26 12:50:17 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-04-26 12:51:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 12:51:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 12:52:07 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:52:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 12:52:07 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:52:07 WARN SessionCheckerServiceImpl:80 - Scope is null at Tue Apr 26 12:52:07 CEST 2016 -2016-04-26 12:52:07 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:57:59 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-26 12:57:59 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-26 12:57:59 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-26 12:57:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:57:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-26 12:57:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:57:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi null -2016-04-26 12:57:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:57:59 DEBUG ASLSession:311 - Scope is null, returning null -2016-04-26 12:57:59 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=null, scopeName=null, userEmailAddress=null, userFullName=null] -2016-04-26 12:58:01 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:58:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:58:01 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:58:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi null -2016-04-26 12:58:01 INFO StatWPSClientSession:84 - CONNECT -2016-04-26 12:58:02 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 12:58:02 DEBUG SClient4WPS:250 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-26 12:58:02 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:58:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 12:58:02 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:58:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi null -2016-04-26 12:58:02 DEBUG DataMinerManagerServiceImpl:405 - getDataMinerWorkArea() -2016-04-26 12:58:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:58:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:58:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:58:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:58:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:58:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:58:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:58:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:58:02 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-26 12:58:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-26 12:58:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:58:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:58:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:58:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:58:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:58:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:58:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:58:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:58:02 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-26 12:58:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-26 12:58:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:58:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:58:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:58:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:58:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:58:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:58:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:58:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:58:02 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-26 12:58:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-26 12:58:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:58:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:58:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 12:58:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 12:58:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 12:58:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 12:58:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 12:58:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 12:58:02 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-26 12:58:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-26 12:58:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 12:58:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 12:58:54 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:58:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 12:58:54 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 12:58:54 WARN SessionCheckerServiceImpl:80 - Scope is null at Tue Apr 26 12:58:54 CEST 2016 -2016-04-26 12:58:54 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 14:25:34 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-26 14:25:34 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-26 14:25:34 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-26 14:25:34 INFO SessionUtil:49 - no user found in session, use test user -2016-04-26 14:25:34 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 14:25:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 14:25:34 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-26 14:25:34 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@72e91fe8 -2016-04-26 14:25:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:34 INFO ASLSession:352 - Logging the entrance -2016-04-26 14:25:34 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-26 14:25:34 DEBUG TemplateModel:83 - 2016-04-26 14:25:34, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-26 14:25:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 14:25:34 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-26 14:25:36 INFO SessionUtil:49 - no user found in session, use test user -2016-04-26 14:25:36 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-26 14:25:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 14:25:36 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-26 14:25:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:25:36 INFO ASLSession:352 - Logging the entrance -2016-04-26 14:25:36 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-26 14:25:36 DEBUG TemplateModel:83 - 2016-04-26 14:25:36, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-26 14:25:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 14:25:36 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-26 14:25:36 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 120 ms -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-26 14:25:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-26 14:25:37 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-26 14:25:37 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 14:25:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-26 14:25:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@6801fab4 -2016-04-26 14:25:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@1562d92e -2016-04-26 14:25:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1195581d -2016-04-26 14:25:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@86b2007 -2016-04-26 14:25:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 102 ms -2016-04-26 14:25:37 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-26 14:25:37 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-26 14:25:37 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-26 14:25:37 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-26 14:25:37 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-26 14:25:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:25:37 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 14:25:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-26 14:25:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 29 ms -2016-04-26 14:25:37 DEBUG SClient4WPS:113 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-26 14:25:37 INFO SClient4WPS:118 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 14:25:37 DEBUG SClient4WPS:129 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-26 14:25:37 INFO StatWPSClientSession:84 - CONNECT -2016-04-26 14:25:37 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-26 14:25:37 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-26 14:25:37 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-26 14:25:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-26 14:25:37 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-26 14:25:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 14:25:37 DEBUG DataMinerManagerServiceImpl:405 - getDataMinerWorkArea() -2016-04-26 14:25:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:37 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-26 14:25:37 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-26 14:25:37 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-26 14:25:37 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-26 14:25:37 DEBUG JCRRepository:271 - Initialize repository -2016-04-26 14:25:37 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-26 14:25:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-04-26 14:25:37 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 14:25:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-26 14:25:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 100 ms -2016-04-26 14:25:38 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-26 14:25:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-26 14:25:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:38 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-26 14:25:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:38 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-26 14:25:38 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-26 14:25:38 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-26 14:25:38 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-26 14:25:38 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-26 14:25:38 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-26 14:25:38 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-26 14:25:38 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-26 14:25:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:38 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:38 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-26 14:25:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-26 14:25:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:38 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-26 14:25:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-26 14:25:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:39 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-26 14:25:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-26 14:25:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:39 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:39 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-26 14:25:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-26 14:25:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 14:25:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:39 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:39 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-26 14:25:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:40 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:40 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:40 DEBUG SClient4WPS:250 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-26 14:25:40 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-26 14:25:40 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-26 14:25:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 165 msc 0 sec -2016-04-26 14:25:40 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 14:25:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-26 14:25:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 30 ms -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-26 14:25:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 14:25:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-26 14:25:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-04-26 14:25:40 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-26 14:25:40 INFO ISClientConnector:82 - found only one RR, take it -2016-04-26 14:25:40 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-26 14:25:40 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-26 14:25:40 DEBUG StorageClient:517 - set scope: /gcube -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-26 14:25:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-26 14:25:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-26 14:25:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-26 14:25:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 408 msc 0 sec -2016-04-26 14:25:45 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-26 14:25:45 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-26 14:25:45 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-26 14:25:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-26 14:25:45 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-26 14:25:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 14:25:45 INFO SClient4WPS:631 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-04-26 14:25:45 DEBUG SClient4WPS:264 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 14:25:45 INFO StatWPSClientSession:84 - CONNECT -2016-04-26 14:25:45 DEBUG SClient4WPS:285 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-04-26 14:25:45 DEBUG SClient4WPS:289 - WPSClient->Fetching Inputs -2016-04-26 14:25:45 DEBUG SClient4WPS:291 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-04-26 14:25:45 DEBUG SClient4WPS:291 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-04-26 14:25:45 DEBUG SClient4WPS:291 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-04-26 14:25:45 DEBUG SClient4WPS:291 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-04-26 14:25:45 DEBUG SClient4WPS:291 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-04-26 14:25:45 DEBUG SClient4WPS:296 - WPSClient->Fetching Outputs -2016-04-26 14:25:45 DEBUG SClient4WPS:298 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-04-26 14:25:45 DEBUG SClient4WPS:298 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-04-26 14:25:45 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 14:25:45 DEBUG WPS2SM:279 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-04-26 14:25:45 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-04-26 14:25:45 DEBUG WPS2SM:200 - MimeType: text/xml -2016-04-26 14:25:45 DEBUG WPS2SM:201 - Schema: null -2016-04-26 14:25:45 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 14:25:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-04-26 14:25:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsTable -2016-04-26 14:25:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:25:45 DEBUG SClient4WPS:646 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-04-26 14:25:45 DEBUG WPS2SM:254 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-04-26 14:25:45 DEBUG WPS2SM:93 - WPS type: -2016-04-26 14:25:45 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 14:25:45 DEBUG WPS2SM:101 - Guessed default value: -2016-04-26 14:25:45 DEBUG WPS2SM:111 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-04-26 14:25:45 DEBUG WPS2SM:112 - Machter find: true -2016-04-26 14:25:45 DEBUG WPS2SM:113 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-04-26 14:25:45 DEBUG WPS2SM:114 - Machter start: 31 -2016-04-26 14:25:45 DEBUG WPS2SM:115 - Machter end: 103 -2016-04-26 14:25:45 DEBUG WPS2SM:116 - Machter Group Count: 2 -2016-04-26 14:25:45 DEBUG WPS2SM:118 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-04-26 14:25:45 DEBUG WPS2SM:121 - Matcher separator: | -2016-04-26 14:25:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-04-26 14:25:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:FeaturesColumnNames -2016-04-26 14:25:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:25:45 DEBUG SClient4WPS:646 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-04-26 14:25:45 DEBUG WPS2SM:254 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-04-26 14:25:45 DEBUG WPS2SM:93 - WPS type: -2016-04-26 14:25:45 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 14:25:45 DEBUG WPS2SM:101 - Guessed default value: OccCluster_ -2016-04-26 14:25:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:table name of the resulting distribution -2016-04-26 14:25:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-04-26 14:25:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:25:45 DEBUG SClient4WPS:646 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-04-26 14:25:45 DEBUG WPS2SM:254 - Conversion to SM Type->epsilon is a Literal Input -2016-04-26 14:25:45 DEBUG WPS2SM:93 - WPS type: -2016-04-26 14:25:45 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-04-26 14:25:45 DEBUG WPS2SM:101 - Guessed default value: 10 -2016-04-26 14:25:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-04-26 14:25:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:epsilon -2016-04-26 14:25:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:25:45 DEBUG SClient4WPS:646 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-04-26 14:25:45 DEBUG WPS2SM:254 - Conversion to SM Type->min_points is a Literal Input -2016-04-26 14:25:45 DEBUG WPS2SM:93 - WPS type: -2016-04-26 14:25:45 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-04-26 14:25:45 DEBUG WPS2SM:101 - Guessed default value: 1 -2016-04-26 14:25:45 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-04-26 14:25:45 DEBUG WPS2SM:291 - Conversion to SM Type->Name:min_points -2016-04-26 14:25:45 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:25:45 DEBUG SClient4WPS:646 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-04-26 14:25:45 DEBUG SClient4WPS:650 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-04-26 14:25:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 14:25:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:45 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 14:25:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:45 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:45 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-04-26 14:25:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-04-26 14:25:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:46 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 14:25:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 14:25:46 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 14:25:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 14:25:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:46 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:25:46 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-26 14:25:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:25:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:46 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:25:46 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-26 14:25:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-26 14:25:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-26 14:25:46 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-04-26 14:25:46 DEBUG ItemBuilder:108 - Is shared folder: test -2016-04-26 14:25:46 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-04-26 14:25:46 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-04-26 14:25:46 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-04-26 14:25:46 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-04-26 14:25:46 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-04-26 14:25:46 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-04-26 14:25:46 INFO WorkspaceExplorerServiceImpl:142 - end time - 248 msc 0 sec -2016-04-26 14:25:46 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-04-26 14:25:54 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 14:25:54 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 14:25:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 14:25:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:54 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:54 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 14:25:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 14:25:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:54 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:54 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 14:25:54 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 14:25:55 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-04-26 14:25:55 DEBUG ServiceEngine:306 - get() - start -2016-04-26 14:25:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 14:25:55 DEBUG BucketCoding:42 - coding name done -2016-04-26 14:25:55 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-04-26 14:25:55 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-04-26 14:25:55 DEBUG OperationManager:67 - connection(boolean) - start -2016-04-26 14:25:55 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-04-26 14:25:55 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-04-26 14:25:55 DEBUG OperationFactory:97 - getOperation(String) - end -2016-04-26 14:25:55 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-04-26 14:25:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 14:25:55 DEBUG BucketCoding:42 - coding name done -2016-04-26 14:25:55 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-04-26 14:25:55 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-04-26 14:25:55 DEBUG MongoIO:77 - open mongo connection -2016-04-26 14:25:55 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-04-26 14:25:55 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:25:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 14:25:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 14:25:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 14:25:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:55 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:25:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-26 14:25:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:25:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:55 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 14:25:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 14:25:55 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:25:55 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:25:55 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@93de57cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6f86323e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@534cbda5, socketFactory=javax.net.DefaultSocketFactory@5336c65c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-04-26 14:25:55 INFO MongoIO:106 - new mongo connection pool opened -2016-04-26 14:25:55 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-04-26 14:25:55 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-04-26 14:25:55 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-04-26 14:25:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 59 msc 0 sec -2016-04-26 14:25:55 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-26 14:25:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-04-26 14:25:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-04-26 14:25:55 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:119678}] to mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1371608, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:25:55 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-04-26 14:25:55 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:25:55 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:25:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:25:55 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1716479}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1451960, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:25:55 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:25:55 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1716480}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2013871}] to mongo1-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=995396, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:25:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:25:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1716480}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG command:56 - Command execution completed -2016-04-26 14:25:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1716480}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG command:56 - Command execution completed -2016-04-26 14:25:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1716480}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG command:56 - Command execution completed -2016-04-26 14:25:55 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-04-26 14:25:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1716480}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG command:56 - Command execution completed -2016-04-26 14:25:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1716480}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG command:56 - Command execution completed -2016-04-26 14:25:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1716480}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1427408}] to mongo4-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1520228, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:25:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-04-26 14:25:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:25:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-04-26 14:25:56 DEBUG query:56 - Query completed -2016-04-26 14:25:56 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 7 objects -2016-04-26 14:25:56 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2013871} -2016-04-26 14:25:56 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1716480}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-04-26 14:25:56 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1427408} -2016-04-26 14:25:56 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:119678} -2016-04-26 14:25:56 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1716480} -2016-04-26 14:25:56 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1716479} -2016-04-26 14:25:56 INFO MongoIO:508 - Mongo has been closed -2016-04-26 14:25:56 INFO DefaultMongoClient:1329 - getFolderTotalVolume 130827 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-04-26 14:25:56 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-04-26 14:25:56 INFO WorkspaceExplorerServiceImpl:503 - returning size: 130827 -2016-04-26 14:25:58 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 14:25:58 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 14:25:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:25:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 14:25:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:25:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:58 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:58 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 14:25:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 14:25:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:25:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:58 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:58 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 14:25:58 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 14:25:58 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-04-26 14:25:59 DEBUG ServiceEngine:306 - get() - start -2016-04-26 14:25:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 14:25:59 DEBUG BucketCoding:42 - coding name done -2016-04-26 14:25:59 DEBUG ServiceEngine:62 - path(String) - name: DBScan -2016-04-26 14:25:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-04-26 14:25:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-04-26 14:25:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-04-26 14:25:59 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-04-26 14:25:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-04-26 14:25:59 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-04-26 14:25:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 14:25:59 DEBUG BucketCoding:42 - coding name done -2016-04-26 14:25:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-04-26 14:25:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-04-26 14:25:59 DEBUG MongoIO:77 - open mongo connection -2016-04-26 14:25:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-04-26 14:25:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:25:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:25:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:25:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@93de57cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6f86323e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@534cbda5, socketFactory=javax.net.DefaultSocketFactory@5336c65c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-04-26 14:25:59 INFO MongoIO:106 - new mongo connection pool opened -2016-04-26 14:25:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-04-26 14:25:59 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1716482}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2222634, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:25:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-04-26 14:25:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:25:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:25:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:25:59 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2013872}] to mongo1-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1551821, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:25:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:25:59 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:119681}] to mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1293484, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:25:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:25:59 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1427409}] to mongo4-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2114707, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:25:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-04-26 14:25:59 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1716483}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1716483}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG command:56 - Command execution completed -2016-04-26 14:25:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1716483}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG command:56 - Command execution completed -2016-04-26 14:25:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1716483}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG command:56 - Command execution completed -2016-04-26 14:25:59 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-04-26 14:25:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1716483}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG command:56 - Command execution completed -2016-04-26 14:25:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1716483}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG command:56 - Command execution completed -2016-04-26 14:25:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1716483}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:25:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 14:25:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 14:25:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:25:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:59 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 14:25:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 14:25:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:25:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:25:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:25:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:25:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:25:59 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:25:59 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 14:25:59 INFO JCRServlets:267 - Servlet getItemById 7ba62008-739a-4787-ae33-7938ad109a54 -2016-04-26 14:25:59 INFO JCRServlets:697 - Calling Servlet get Parents By Id 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-04-26 14:25:59 INFO JCRServlets:142 - Calling servlet getChildrenById 7ba62008-739a-4787-ae33-7938ad109a54 by giancarlo.panichi -2016-04-26 14:25:59 INFO WorkspaceExplorerServiceImpl:188 - end time - 42 msc 0 sec -2016-04-26 14:25:59 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-04-26 14:25:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=7ba62008-739a-4787-ae33-7938ad109a54, name=DBScan, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-04-26 14:25:59 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-26 14:25:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-04-26 14:25:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-04-26 14:25:59 DEBUG query:56 - Query completed -2016-04-26 14:25:59 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 1 objects -2016-04-26 14:25:59 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2013872} -2016-04-26 14:25:59 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:119681} -2016-04-26 14:25:59 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1716483}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-04-26 14:25:59 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1427409} -2016-04-26 14:25:59 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1716483} -2016-04-26 14:25:59 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1716482} -2016-04-26 14:25:59 INFO MongoIO:508 - Mongo has been closed -2016-04-26 14:26:00 INFO DefaultMongoClient:1329 - getFolderTotalVolume 849 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-04-26 14:26:00 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan -2016-04-26 14:26:00 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-04-26 14:26:03 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 14:26:03 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 14:26:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:26:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 14:26:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:26:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:26:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:26:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:26:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:26:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:26:03 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:26:03 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 14:26:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:26:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-26 14:26:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:26:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:26:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:26:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:26:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:26:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:26:03 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:26:03 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 14:26:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:26:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 14:26:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:26:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:26:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:26:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:26:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:26:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:26:03 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:26:03 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 14:26:03 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 14:26:03 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 14:26:03 INFO WorkspaceExplorerServiceImpl:503 - returning size: 849 -2016-04-26 14:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-26 14:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-26 14:26:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 14:26:04 DEBUG DataMinerManagerServiceImpl:387 - retrieveTableInformation(): Item [id=13d0382e-8833-4df7-b4dc-61bbba61b3e5, name=hcaf_filtered.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Wed Mar 09 17:10:22 CET 2016] -2016-04-26 14:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:26:04 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 14:26:04 DEBUG ServiceEngine:193 - get() - start -2016-04-26 14:26:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 14:26:04 DEBUG BucketCoding:42 - coding name done -2016-04-26 14:26:04 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-04-26 14:26:04 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-04-26 14:26:04 DEBUG OperationManager:67 - connection(boolean) - start -2016-04-26 14:26:04 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-04-26 14:26:04 INFO OperationFactory:39 - getOperation(String) - start download -2016-04-26 14:26:04 DEBUG OperationFactory:97 - getOperation(String) - end -2016-04-26 14:26:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 14:26:04 DEBUG BucketCoding:42 - coding name done -2016-04-26 14:26:04 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 14:26:04 DEBUG Operation:173 - get(String) - start -2016-04-26 14:26:04 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-04-26 14:26:04 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-04-26 14:26:04 DEBUG MongoIO:77 - open mongo connection -2016-04-26 14:26:04 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-04-26 14:26:04 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:26:04 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:26:04 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:26:04 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@93de57cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6f86323e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@534cbda5, socketFactory=javax.net.DefaultSocketFactory@5336c65c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-04-26 14:26:04 INFO MongoIO:106 - new mongo connection pool opened -2016-04-26 14:26:04 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-04-26 14:26:04 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1716484}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1466381, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:26:04 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-04-26 14:26:04 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:26:04 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:26:04 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:26:04 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:119684}] to mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2013873}] to mongo1-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=980600, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:26:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:26:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=6354393, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:26:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:26:04 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1427410}] to mongo4-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1253686, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:26:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-04-26 14:26:04 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1716485}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG command:56 - Command execution completed -2016-04-26 14:26:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG command:56 - Command execution completed -2016-04-26 14:26:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG command:56 - Command execution completed -2016-04-26 14:26:04 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-04-26 14:26:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG command:56 - Command execution completed -2016-04-26 14:26:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG command:56 - Command execution completed -2016-04-26 14:26:04 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 14:26:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG command:56 - Command execution completed -2016-04-26 14:26:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG command:56 - Command execution completed -2016-04-26 14:26:04 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 14:26:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG query:56 - Query completed -2016-04-26 14:26:04 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-04-26 14:26:04 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-04-26 14:26:04 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-04-26 14:26:04 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG update:56 - Update completed -2016-04-26 14:26:04 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1716485}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:04 DEBUG query:56 - Query completed -2016-04-26 14:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-26 14:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-26 14:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-26 14:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-26 14:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-26 14:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-04-26 14:26:04 INFO JCRServlets:267 - Servlet getItemById 13d0382e-8833-4df7-b4dc-61bbba61b3e5 -2016-04-26 14:26:04 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered.csv -2016-04-26 14:26:04 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-04-26 14:26:04 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-04-26 14:26:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 14:26:04 DEBUG BucketCoding:42 - coding name done -2016-04-26 14:26:04 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered.csv -2016-04-26 14:26:04 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/ -2016-04-26 14:26:04 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-04-26 14:26:04 DEBUG OperationManager:67 - connection(boolean) - start -2016-04-26 14:26:04 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-04-26 14:26:04 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-04-26 14:26:04 DEBUG OperationFactory:97 - getOperation(String) - end -2016-04-26 14:26:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-04-26 14:26:04 DEBUG BucketCoding:42 - coding name done -2016-04-26 14:26:04 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-04-26 14:26:04 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-04-26 14:26:04 DEBUG MongoIO:77 - open mongo connection -2016-04-26 14:26:04 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-04-26 14:26:04 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:26:04 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:26:04 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:26:04 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@93de57cb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6f86323e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@534cbda5, socketFactory=javax.net.DefaultSocketFactory@5336c65c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-04-26 14:26:04 INFO MongoIO:106 - new mongo connection pool opened -2016-04-26 14:26:04 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-04-26 14:26:05 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1716486}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1273002, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:26:05 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-04-26 14:26:05 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:26:05 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-04-26 14:26:05 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:26:05 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2013874}] to mongo1-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=758481, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:26:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:26:05 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:119685}] to mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1031234, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:26:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-04-26 14:26:05 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1427411}] to mongo4-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1182845, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-04-26 14:26:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-04-26 14:26:05 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1716487}] to mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1716487}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG command:56 - Command execution completed -2016-04-26 14:26:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1716487}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG command:56 - Command execution completed -2016-04-26 14:26:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1716487}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG command:56 - Command execution completed -2016-04-26 14:26:05 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 14:26:05 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 14:26:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1716487}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG command:56 - Command execution completed -2016-04-26 14:26:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1716487}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG command:56 - Command execution completed -2016-04-26 14:26:05 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 14:26:05 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1716487}] to server mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:05 DEBUG query:56 - Query completed -2016-04-26 14:26:05 INFO MongoIO:186 - object found hcaf_filtered.csv -2016-04-26 14:26:05 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2013874} -2016-04-26 14:26:05 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:119685} -2016-04-26 14:26:05 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1716487}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-04-26 14:26:05 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1427411} -2016-04-26 14:26:05 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1716487} -2016-04-26 14:26:05 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1716486} -2016-04-26 14:26:05 INFO MongoIO:508 - Mongo has been closed -2016-04-26 14:26:05 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/DBScan/hcaf_filtered.csv -2016-04-26 14:26:05 INFO Operation:55 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-04-26 14:26:05 INFO Operation:57 - URL generated: smp://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-04-26 14:26:05 DEBUG Operation:87 - translating: http://data-d.d4science.org/8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-04-26 14:26:05 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-04-26 14:26:05 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 8Yjj+HQc0gLVW2bfDjeAkOhqzg9XDTeiGmbP5+HKCzc= -2016-04-26 14:26:05 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-04-26 14:26:05 INFO Operation:65 - URL translated: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-04-26 14:26:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-04-26 14:26:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-04-26 14:26:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-04-26 14:26:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-04-26 14:26:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-04-26 14:26:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-04-26 14:26:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-04-26 14:26:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-04-26 14:26:15 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2013873} -2016-04-26 14:26:15 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1427410} -2016-04-26 14:26:15 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1716485}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-04-26 14:26:15 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:119684} -2016-04-26 14:26:15 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1716485} -2016-04-26 14:26:15 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1716484} -2016-04-26 14:26:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:26:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 14:26:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-26 14:26:47 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-26 14:26:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 14:26:47 DEBUG DataMinerManagerServiceImpl:149 - StartComputation(): [computationTitle=Dbscan-2016-04-26 14:25, computationDescription=Dbscan-2016-04-26 14:25, operator=Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[TabularParameter [tableName=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0, templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=Test, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=10, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=1, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]], hasImage=false]] -2016-04-26 14:26:47 DEBUG SClient4WPS:264 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 14:26:47 INFO StatWPSClientSession:84 - CONNECT -2016-04-26 14:26:47 DEBUG SClient4WPS:285 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-04-26 14:26:47 DEBUG SClient4WPS:289 - WPSClient->Fetching Inputs -2016-04-26 14:26:47 DEBUG SClient4WPS:291 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-04-26 14:26:47 DEBUG SClient4WPS:291 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-04-26 14:26:47 DEBUG SClient4WPS:291 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-04-26 14:26:47 DEBUG SClient4WPS:291 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-04-26 14:26:47 DEBUG SClient4WPS:291 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-04-26 14:26:47 DEBUG SClient4WPS:296 - WPSClient->Fetching Outputs -2016-04-26 14:26:47 DEBUG SClient4WPS:298 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-04-26 14:26:47 DEBUG SClient4WPS:298 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-04-26 14:26:47 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 14:26:47 DEBUG WPS2SM:279 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-04-26 14:26:47 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-04-26 14:26:47 DEBUG WPS2SM:200 - MimeType: text/xml -2016-04-26 14:26:47 DEBUG WPS2SM:201 - Schema: null -2016-04-26 14:26:47 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 14:26:47 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-04-26 14:26:47 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsTable -2016-04-26 14:26:47 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:26:47 DEBUG SClient4WPS:681 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-04-26 14:26:47 DEBUG WPS2SM:254 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-04-26 14:26:47 DEBUG WPS2SM:93 - WPS type: -2016-04-26 14:26:47 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 14:26:47 DEBUG WPS2SM:101 - Guessed default value: -2016-04-26 14:26:47 DEBUG WPS2SM:111 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-04-26 14:26:47 DEBUG WPS2SM:112 - Machter find: true -2016-04-26 14:26:47 DEBUG WPS2SM:113 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-04-26 14:26:47 DEBUG WPS2SM:114 - Machter start: 31 -2016-04-26 14:26:47 DEBUG WPS2SM:115 - Machter end: 103 -2016-04-26 14:26:47 DEBUG WPS2SM:116 - Machter Group Count: 2 -2016-04-26 14:26:47 DEBUG WPS2SM:118 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-04-26 14:26:47 DEBUG WPS2SM:121 - Matcher separator: | -2016-04-26 14:26:47 DEBUG WPS2SM:290 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-04-26 14:26:47 DEBUG WPS2SM:291 - Conversion to SM Type->Name:FeaturesColumnNames -2016-04-26 14:26:47 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:26:47 DEBUG SClient4WPS:681 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-04-26 14:26:47 DEBUG WPS2SM:254 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-04-26 14:26:47 DEBUG WPS2SM:93 - WPS type: -2016-04-26 14:26:47 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-04-26 14:26:47 DEBUG WPS2SM:101 - Guessed default value: OccCluster_ -2016-04-26 14:26:47 DEBUG WPS2SM:290 - Conversion to SM Type->Title:table name of the resulting distribution -2016-04-26 14:26:47 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-04-26 14:26:47 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:26:47 DEBUG SClient4WPS:681 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-04-26 14:26:47 DEBUG WPS2SM:254 - Conversion to SM Type->epsilon is a Literal Input -2016-04-26 14:26:47 DEBUG WPS2SM:93 - WPS type: -2016-04-26 14:26:47 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-04-26 14:26:47 DEBUG WPS2SM:101 - Guessed default value: 10 -2016-04-26 14:26:47 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-04-26 14:26:47 DEBUG WPS2SM:291 - Conversion to SM Type->Name:epsilon -2016-04-26 14:26:47 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:26:47 DEBUG SClient4WPS:681 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-04-26 14:26:47 DEBUG WPS2SM:254 - Conversion to SM Type->min_points is a Literal Input -2016-04-26 14:26:47 DEBUG WPS2SM:93 - WPS type: -2016-04-26 14:26:47 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-04-26 14:26:47 DEBUG WPS2SM:101 - Guessed default value: 1 -2016-04-26 14:26:47 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-04-26 14:26:47 DEBUG WPS2SM:291 - Conversion to SM Type->Name:min_points -2016-04-26 14:26:47 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-04-26 14:26:47 DEBUG SClient4WPS:681 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-04-26 14:26:47 DEBUG SClient4WPS:689 - UserInputs= key:OccurrencePointsTable, value=http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-04-26 14:26:47 DEBUG SClient4WPS:689 - UserInputs= key:FeaturesColumnNames, value=depthmean|sstmnmax|salinitymean -2016-04-26 14:26:47 DEBUG SClient4WPS:689 - UserInputs= key:OccurrencePointsClusterLabel, value=Test -2016-04-26 14:26:47 DEBUG SClient4WPS:689 - UserInputs= key:epsilon, value=10 -2016-04-26 14:26:47 DEBUG SClient4WPS:689 - UserInputs= key:min_points, value=1 -2016-04-26 14:26:47 DEBUG SClient4WPS:748 - Configuring Complex: OccurrencePointsTable to: http://data-d.d4science.org/OFlqaitIUWMwZ0xWVzJiZkRqZUFrT2hxemc5WERUZWlHbWJQNStIS0N6Yz0 -2016-04-26 14:26:47 DEBUG SClient4WPS:731 - Configuring Literal: FeaturesColumnNames to: depthmean|sstmnmax|salinitymean -2016-04-26 14:26:47 DEBUG SClient4WPS:731 - Configuring Literal: OccurrencePointsClusterLabel to: Test -2016-04-26 14:26:47 DEBUG SClient4WPS:731 - Configuring Literal: epsilon to: 10 -2016-04-26 14:26:47 DEBUG SClient4WPS:731 - Configuring Literal: min_points to: 1 -2016-04-26 14:26:47 INFO StatWPSClientSession:84 - CONNECT -2016-04-26 14:26:48 DEBUG SClient4WPS:380 - Sending: - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - - - OccurrencePointsTable - - - - FeaturesColumnNames - - depthmean|sstmnmax|salinitymean - - - - OccurrencePointsClusterLabel - - Test - - - - epsilon - - 10 - - - - min_points - - 1 - - - - - - - OutputTable - - - non_deterministic_output - - - - -2016-04-26 14:26:48 DEBUG StatWPSClientSession:420 - RetrieveDataViaPost(): http://dataminer1-d-d4s.d4science.org:80/wps/WebProcessingService? -2016-04-26 14:26:48 DEBUG SClient4WPS:399 - Retrieved ProcessLocation: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862 -2016-04-26 14:26:48 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-26 14:26:48 DEBUG SClient4WPS:768 - Starting Process: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862 -2016-04-26 14:26:48 DEBUG SClient4WPS:695 - Stated Computation ProcessLocation:http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862 -2016-04-26 14:26:48 DEBUG SClient4WPS:706 - ComputationId: ComputationId [id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862] -2016-04-26 14:26:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:26:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 14:26:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 14:26:58 DEBUG SClient4WPS:784 - GetComputationStatus(): ComputationId=ComputationId [id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862] -2016-04-26 14:26:58 INFO StatWPSClientSession:114 - CONNECT -2016-04-26 14:26:58 WARN StatWPSClientSession:120 - retrieving caps failed, caps are null -2016-04-26 14:26:58 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862 -2016-04-26 14:26:58 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-04-26 14:26:58 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-04-26 14:26:58 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-04-26 14:26:58 DEBUG SClient4WPS:800 - ComputationStatus ResponseObject: - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/dU1KYUp4OS81THhxUmhYZ0pWd0RHaHhkV2FGdkcyWXpHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-04-26 14:26:58 DEBUG SClient4WPS:858 - WPS SUCCESS -2016-04-26 14:26:58 DEBUG SClient4WPS:883 - ComputationStatus: ComputationStatus [percentage=100.0, status=COMPLETE, endDate=null, message=null, errResource=null] -2016-04-26 14:26:58 DEBUG Log:91 - getResourceByComputationId: ComputationId [id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862, urlId=http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862] -2016-04-26 14:26:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:26:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-26 14:26:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-26 14:26:58 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:OutputTable -2016-04-26 14:26:58 DEBUG WPS2SM:315 - Conversion to SM Type->Title:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-04-26 14:26:58 DEBUG WPS2SM:331 - Complex Output -2016-04-26 14:26:58 DEBUG WPS2SM:200 - MimeType: text/csv -2016-04-26 14:26:58 DEBUG WPS2SM:201 - Schema: null -2016-04-26 14:26:58 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 14:26:58 DEBUG SClient4WPS:932 - OutputParameter: TabularParameter [tableName= , templates=[], name=OutputTable, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=TABULAR] -2016-04-26 14:26:58 DEBUG WPS2SM:314 - Conversion to SM Type->Output id:non_deterministic_output -2016-04-26 14:26:58 DEBUG WPS2SM:315 - Conversion to SM Type->Title:NonDeterministicOutput -2016-04-26 14:26:58 DEBUG WPS2SM:331 - Complex Output -2016-04-26 14:26:58 DEBUG WPS2SM:200 - MimeType: text/xml; subtype=gml/2.1.2 -2016-04-26 14:26:58 DEBUG WPS2SM:201 - Schema: http://schemas.opengis.net/gml/2.1.2/feature.xsd -2016-04-26 14:26:58 DEBUG WPS2SM:202 - Encoding: null -2016-04-26 14:26:58 DEBUG SClient4WPS:932 - OutputParameter: FileParameter [mimeType=text/xml; subtype=gml/2.1.2, value=null, name=non_deterministic_output, description=NonDeterministicOutput, typology=FILE] -2016-04-26 14:26:58 DEBUG SClient4WPS:419 - RetrieveProcessResult: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862 -2016-04-26 14:26:58 DEBUG StatWPSClientSession:554 - ExecuteViaGet() Url: http://dataminer1-d-d4s.d4science.org:80/wps/RetrieveResultServlet?id=97ef1d9b-28f5-4e34-99ab-549a4cb6e862 -2016-04-26 14:26:58 DEBUG StatWPSClientSession:558 - auth string: giancarlo.panichi:f0666597-4302-49ce-bea2-555b94e569cb -2016-04-26 14:26:58 DEBUG StatWPSClientSession:561 - Base64 encoded auth string: Z2lhbmNhcmxvLnBhbmljaGk6ZjA2NjY1OTctNDMwMi00OWNlLWJlYTItNTU1Yjk0ZTU2OWNi -2016-04-26 14:26:58 DEBUG StatWPSClientSession:576 - ExecuteAsGETString as Document -2016-04-26 14:26:58 DEBUG SClient4WPS:430 - Response: - - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - - - Process successful - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - depthmean,sstmnmax,salinitymean,clusterid,outlier -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f -0,110117104,110117104,1,f - - - - non_deterministic_output - NonDeterministicOutput - - - - - - http://data-d.d4science.org/dU1KYUp4OS81THhxUmhYZ0pWd0RHaHhkV2FGdkcyWXpHbWJQNStIS0N6Yz0 - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - text/csv - - - - - - - - -2016-04-26 14:26:58 DEBUG SClient4WPS:946 - Process Executed -2016-04-26 14:26:58 DEBUG SClient4WPS:570 - Node Name: wps:ComplexData -2016-04-26 14:26:58 DEBUG SClient4WPS:570 - Node Name: #text -2016-04-26 14:26:58 DEBUG SClient4WPS:570 - Node Name: wps:ComplexData -2016-04-26 14:26:58 DEBUG SClient4WPS:570 - Node Name: ogr:FeatureCollection -2016-04-26 14:26:58 DEBUG SClient4WPS:570 - Node Name: gml:featureMember -2016-04-26 14:26:58 DEBUG SClient4WPS:570 - Node Name: ogr:Result -2016-04-26 14:26:58 DEBUG SClient4WPS:537 - Node Name: d4science:Data- Value:http://data-d.d4science.org/dU1KYUp4OS81THhxUmhYZ0pWd0RHaHhkV2FGdkcyWXpHbWJQNStIS0N6Yz0 -2016-04-26 14:26:58 DEBUG SClient4WPS:537 - Node Name: d4science:Description- Value:Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] -2016-04-26 14:26:58 DEBUG SClient4WPS:537 - Node Name: d4science:MimeType- Value:text/csv -2016-04-26 14:26:58 DEBUG SClient4WPS:499 - ResponseWPS Map: F0-->ResponseWPS [data=http://data-d.d4science.org/dU1KYUp4OS81THhxUmhYZ0pWd0RHaHhkV2FGdkcyWXpHbWJQNStIS0N6Yz0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], mimeType=text/csv] -2016-04-26 14:26:58 DEBUG SClient4WPS:994 - Adding OBJ:F0 -2016-04-26 14:26:58 DEBUG SClient4WPS:1000 - ObjectParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=http://data-d.d4science.org/dU1KYUp4OS81THhxUmhYZ0pWd0RHaHhkV2FGdkcyWXpHbWJQNStIS0N6Yz0, name=F0, description=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], typology=OBJECT] -2016-04-26 14:26:58 DEBUG Log:91 - Resoure: MapResource [map={F0=FileResource [url=http://data-d.d4science.org/dU1KYUp4OS81THhxUmhYZ0pWd0RHaHhkV2FGdkcyWXpHbWJQNStIS0N6Yz0, mimeType=text/csv, getResourceId()=F0, getName()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getDescription()=Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb], getResourceType()=FILE]}, getResourceId()=mapResource, getName()=Resources, getDescription()=Resources, getResourceType()=MAP] -2016-04-26 14:27:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:27:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-26 14:28:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:28:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 14:29:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:29:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 14:30:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-26 14:30:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-26 14:31:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-26 14:31:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-26 14:31:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:31:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-26 14:32:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-26 14:32:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-26 14:33:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 14:33:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 14:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-26 14:34:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-26 14:35:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-26 14:35:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-26 14:36:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:36:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 14:37:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:37:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 14:38:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:38:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 14:39:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:39:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 14:40:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-26 14:40:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-26 17:21:25 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-26 17:21:25 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-26 17:21:25 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-26 17:21:25 INFO SessionUtil:64 - no user found in session, use test user -2016-04-26 17:21:28 INFO SessionUtil:64 - no user found in session, use test user -2016-04-26 17:21:28 ERROR DataMinerManagerServiceImpl:114 - An error occurred getting the OperatorsClassifications list -org.gcube.portlets.user.dataminermanager.shared.exception.ExpiredSessionServiceException: Session Expired! - at org.gcube.portlets.user.dataminermanager.server.util.SessionUtil.getASLSession(SessionUtil.java:65) - at org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl.getOperatorsClassifications(DataMinerManagerServiceImpl.java:109) - at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) - at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) - at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) - at java.lang.reflect.Method.invoke(Method.java:606) - at com.google.gwt.user.server.rpc.RPC.invokeAndEncodeResponse(RPC.java:561) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processCall(RemoteServiceServlet.java:265) - at com.google.gwt.user.server.rpc.RemoteServiceServlet.processPost(RemoteServiceServlet.java:305) - at com.google.gwt.user.server.rpc.AbstractRemoteServiceServlet.doPost(AbstractRemoteServiceServlet.java:62) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:755) - at javax.servlet.http.HttpServlet.service(HttpServlet.java:848) - at org.eclipse.jetty.servlet.ServletHolder.handle(ServletHolder.java:686) - at org.eclipse.jetty.servlet.ServletHandler.doHandle(ServletHandler.java:501) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:137) - at org.eclipse.jetty.security.SecurityHandler.handle(SecurityHandler.java:557) - at org.eclipse.jetty.server.session.SessionHandler.doHandle(SessionHandler.java:231) - at org.eclipse.jetty.server.handler.ContextHandler.doHandle(ContextHandler.java:1086) - at org.eclipse.jetty.servlet.ServletHandler.doScope(ServletHandler.java:428) - at org.eclipse.jetty.server.session.SessionHandler.doScope(SessionHandler.java:193) - at org.eclipse.jetty.server.handler.ContextHandler.doScope(ContextHandler.java:1020) - at org.eclipse.jetty.server.handler.ScopedHandler.handle(ScopedHandler.java:135) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.handler.RequestLogHandler.handle(RequestLogHandler.java:68) - at org.eclipse.jetty.server.handler.HandlerWrapper.handle(HandlerWrapper.java:116) - at org.eclipse.jetty.server.Server.handle(Server.java:370) - at org.eclipse.jetty.server.AbstractHttpConnection.handleRequest(AbstractHttpConnection.java:489) - at org.eclipse.jetty.server.AbstractHttpConnection.content(AbstractHttpConnection.java:960) - at org.eclipse.jetty.server.AbstractHttpConnection$RequestHandler.content(AbstractHttpConnection.java:1021) - at org.eclipse.jetty.http.HttpParser.parseNext(HttpParser.java:865) - at org.eclipse.jetty.http.HttpParser.parseAvailable(HttpParser.java:240) - at org.eclipse.jetty.server.AsyncHttpConnection.handle(AsyncHttpConnection.java:82) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint.handle(SelectChannelEndPoint.java:668) - at org.eclipse.jetty.io.nio.SelectChannelEndPoint$1.run(SelectChannelEndPoint.java:52) - at org.eclipse.jetty.util.thread.QueuedThreadPool.runJob(QueuedThreadPool.java:608) - at org.eclipse.jetty.util.thread.QueuedThreadPool$3.run(QueuedThreadPool.java:543) - at java.lang.Thread.run(Thread.java:745) -2016-04-27 17:25:54 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 17:25:54 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 17:25:55 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 17:25:55 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:25:55 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:25:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:25:55 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:25:55 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@882bac5 -2016-04-27 17:25:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:25:55 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:25:55 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:25:55 DEBUG TemplateModel:83 - 2016-04-27 17:25:55, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:25:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:25:55 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 17:25:57 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:25:57 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:25:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:25:57 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:25:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:25:57 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:25:57 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:25:57 DEBUG TemplateModel:83 - 2016-04-27 17:25:57, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:25:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:25:58 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:25:58 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 109 ms -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 17:25:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 17:25:58 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 17:25:59 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:25:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:25:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7749934e -2016-04-27 17:25:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@16e5c7b0 -2016-04-27 17:25:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4c62c6c2 -2016-04-27 17:25:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2ef9421b -2016-04-27 17:25:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 252 ms -2016-04-27 17:25:59 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 17:25:59 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 17:25:59 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 17:25:59 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 17:25:59 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 17:25:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:25:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:25:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 17:25:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 27 ms -2016-04-27 17:25:59 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 17:25:59 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:25:59 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 17:25:59 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 17:25:59 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:25:59 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:25:59 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:25:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:25:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:25:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:25:59 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 17:25:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:25:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:25:59 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 17:25:59 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 17:25:59 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 17:25:59 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 17:25:59 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 17:25:59 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 17:25:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-27 17:26:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:26:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 17:26:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-04-27 17:26:00 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 17:26:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:26:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:26:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:26:00 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 17:26:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:26:00 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 17:26:00 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:26:00 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 17:26:00 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:26:01 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:26:01 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 17:26:01 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:26:01 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:26:01 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:26:01 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:26:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:26:01 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 17:26:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 17:26:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:26:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:26:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:26:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:26:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:26:01 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:26:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:26:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 17:26:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:26:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:26:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:26:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:26:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:26:01 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:26:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:26:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 17:26:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:26:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:26:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:26:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:26:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:26:01 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:26:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:26:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 17:26:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:26:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:26:02 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:26:02 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:26:02 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:26:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:26:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:26:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:26:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:26:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:26:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:26:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:26:02 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 17:26:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:26:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:26:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:26:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:26:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:26:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:26:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:26:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:26:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:26:02 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:26:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:26:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:26:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:26:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:26:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:26:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:26:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:26:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:26:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:26:02 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 17:26:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:26:02 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 17:26:02 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 17:26:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:26:02 INFO WorkspaceExplorerServiceImpl:188 - end time - 236 msc 0 sec -2016-04-27 17:26:02 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 17:26:02 INFO WorkspaceExplorerServiceImpl:188 - end time - 157 msc 0 sec -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:26:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:26:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:26:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 21 ms -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:26:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:26:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 17:26:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-04-27 17:26:02 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 17:26:02 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 17:26:02 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 17:26:02 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:26:02 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:26:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:26:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:26:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:26:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:26:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 409 msc 0 sec -2016-04-27 17:26:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:26:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:28:09 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 17:28:09 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 17:28:09 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 17:28:09 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:28:09 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:28:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:28:09 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:28:09 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@d83d36e -2016-04-27 17:28:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:28:09 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:28:09 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:28:09 DEBUG TemplateModel:83 - 2016-04-27 17:28:09, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:28:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:28:09 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 17:28:11 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:28:11 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:28:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:28:11 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:28:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:28:11 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:28:11 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:28:11 DEBUG TemplateModel:83 - 2016-04-27 17:28:11, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:28:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:28:11 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:28:12 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 120 ms -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 17:28:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 17:28:12 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 17:28:12 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:28:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:28:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@18658ccd -2016-04-27 17:28:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@97f5cbb -2016-04-27 17:28:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4bff3cf8 -2016-04-27 17:28:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@379844e3 -2016-04-27 17:28:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 103 ms -2016-04-27 17:28:12 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 17:28:12 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 17:28:12 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 17:28:12 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 17:28:12 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 17:28:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:28:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:28:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 17:28:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 18 ms -2016-04-27 17:28:12 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 17:28:12 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:28:12 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 17:28:12 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 17:28:12 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:28:12 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:28:12 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:28:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:28:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 17:28:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:28:12 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 17:28:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:28:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:28:12 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 17:28:12 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 17:28:12 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 17:28:12 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 17:28:13 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 17:28:13 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 17:28:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-04-27 17:28:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:28:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 17:28:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-04-27 17:28:13 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 17:28:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:28:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:28:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:28:13 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 17:28:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:28:13 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 17:28:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:28:13 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 17:28:13 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:28:13 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:28:13 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 17:28:13 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:28:13 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:28:13 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 17:28:13 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 17:28:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:28:13 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:28:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:28:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:28:13 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 17:28:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 17:28:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:28:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:28:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:28:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:28:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:28:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:28:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:28:13 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:28:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:28:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 17:28:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:28:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:28:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:28:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:28:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:28:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:28:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:28:14 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:28:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:28:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 17:28:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:28:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:28:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:28:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:28:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:28:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:28:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:28:15 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:28:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:28:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 17:28:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:28:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:28:15 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:28:15 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:28:15 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:28:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:28:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:28:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:28:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:28:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:28:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:28:15 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:28:15 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 17:28:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:28:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:28:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:28:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:28:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:28:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:28:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:28:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:28:15 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:28:15 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 17:28:15 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 17:28:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 128 msc 0 sec -2016-04-27 17:28:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:28:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:28:15 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 17:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:28:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:28:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:28:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:28:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:28:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:28:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:28:15 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:28:15 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 17:28:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:28:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:28:16 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 17:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:28:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:28:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:28:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 21 ms -2016-04-27 17:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:28:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:28:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 17:28:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 150 msc 0 sec -2016-04-27 17:28:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-04-27 17:28:16 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 17:28:16 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 17:28:16 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 17:28:16 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 17:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:28:16 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 17:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:28:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:28:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:28:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-04-27 17:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:28:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 366 msc 0 sec -2016-04-27 17:29:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:29:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:29:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:29:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:30:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:30:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:31:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:31:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:32:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:32:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 17:33:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:33:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:34:24 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 17:34:24 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 17:34:24 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 17:34:24 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:34:24 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:34:24 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:34:24 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:34:24 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@281573e2 -2016-04-27 17:34:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:34:24 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:34:24 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:34:24 DEBUG TemplateModel:83 - 2016-04-27 17:34:24, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:34:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:34:24 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 17:34:26 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:34:26 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:34:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:34:26 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:34:26 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:34:26 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:34:26 DEBUG TemplateModel:83 - 2016-04-27 17:34:26, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:34:26 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:34:26 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:34:26 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 111 ms -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 17:34:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 17:34:26 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 17:34:26 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:34:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:34:27 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@34cf431 -2016-04-27 17:34:27 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@39cc1d68 -2016-04-27 17:34:27 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@77804b15 -2016-04-27 17:34:27 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@3ee94f83 -2016-04-27 17:34:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-04-27 17:34:27 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 17:34:27 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 17:34:27 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 17:34:27 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 17:34:27 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 17:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:34:27 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:34:27 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 17:34:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-04-27 17:34:27 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 17:34:27 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:34:27 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 17:34:27 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 17:34:27 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:34:27 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:34:27 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:34:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:34:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:34:27 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 17:34:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:34:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:34:27 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 17:34:27 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 17:34:27 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 17:34:27 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 17:34:27 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 17:34:27 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 17:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:34:27 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:34:27 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 17:34:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 18 ms -2016-04-27 17:34:27 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 17:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:34:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:34:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:34:27 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 17:34:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:34:27 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 17:34:27 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:34:28 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 17:34:28 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:34:28 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:34:28 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 17:34:28 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:34:28 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:34:28 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:34:28 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:34:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:34:28 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 17:34:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 17:34:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:34:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:34:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:34:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:34:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:34:28 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:34:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:34:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 17:34:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:34:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:34:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:34:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:34:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:34:28 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:34:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:34:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 17:34:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:34:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:34:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:34:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:34:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:34:28 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:34:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:34:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 17:34:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:34:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:34:29 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:34:29 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:34:29 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:34:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:34:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:34:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:34:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:34:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:34:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:34:29 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:34:29 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 17:34:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:34:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:34:29 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:34:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:34:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:34:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:34:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:34:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:34:29 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:34:29 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 17:34:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:34:29 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 17:34:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:34:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 123 msc 0 sec -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:34:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:34:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:34:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:34:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:34:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:34:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:34:29 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:34:29 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 17:34:29 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 17:34:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:34:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:34:29 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:34:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:34:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:34:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 30 ms -2016-04-27 17:34:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 140 msc 0 sec -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:34:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:34:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 17:34:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 28 ms -2016-04-27 17:34:29 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 17:34:29 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 17:34:29 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 17:34:29 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:34:29 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:34:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:34:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:34:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:34:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 356 msc 0 sec -2016-04-27 17:35:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:35:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:36:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-27 17:36:14 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-27 17:37:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:37:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:38:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:38:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:38:49 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 17:38:49 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 17:38:49 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 17:38:49 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:38:49 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:38:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:38:49 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:38:49 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@33de31f7 -2016-04-27 17:38:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:38:49 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:38:49 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:38:49 DEBUG TemplateModel:83 - 2016-04-27 17:38:49, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:38:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:38:49 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 17:38:51 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:38:51 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:38:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:38:51 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:38:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:38:51 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:38:51 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:38:51 DEBUG TemplateModel:83 - 2016-04-27 17:38:51, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:38:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:38:51 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:38:51 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 119 ms -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 17:38:51 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 17:38:51 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 17:38:51 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:38:51 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:38:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@68f2a574 -2016-04-27 17:38:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6eade3f5 -2016-04-27 17:38:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5544e123 -2016-04-27 17:38:51 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@62b14dee -2016-04-27 17:38:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 103 ms -2016-04-27 17:38:52 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 17:38:52 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 17:38:52 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 17:38:52 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 17:38:52 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 17:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:38:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:38:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 17:38:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-04-27 17:38:52 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 17:38:52 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:38:52 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 17:38:52 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 17:38:52 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:38:52 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:38:52 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:38:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 17:38:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:38:52 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 17:38:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:38:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:38:52 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 17:38:52 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 17:38:52 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 17:38:52 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 17:38:52 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 17:38:52 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 17:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-04-27 17:38:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:38:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 17:38:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 18 ms -2016-04-27 17:38:52 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 17:38:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:38:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:38:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:38:52 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 17:38:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:38:52 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 17:38:52 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:38:52 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 17:38:53 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:38:53 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:38:53 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 17:38:53 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:38:53 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:38:53 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 17:38:53 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 17:38:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:38:53 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:38:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:38:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:38:53 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 17:38:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 17:38:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:38:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:38:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:38:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:38:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:38:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:38:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:38:53 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:38:53 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:38:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 17:38:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:38:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:38:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:38:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:38:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:38:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:38:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:38:53 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:38:53 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:38:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 17:38:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:38:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:38:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:38:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:38:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:38:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:38:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:38:53 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:38:53 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:38:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 17:38:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:38:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:38:55 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:38:55 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:38:55 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:38:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:38:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:38:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:38:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:38:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:38:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:38:55 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:38:55 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 17:38:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:38:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:38:55 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 17:38:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 130 msc 0 sec -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:38:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:38:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:38:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:38:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:38:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:38:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:38:55 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:38:55 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 17:38:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:38:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:38:55 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:38:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:38:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:38:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:38:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:38:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:38:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:38:55 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:38:55 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 17:38:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:38:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:38:55 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:38:55 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 17:38:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:38:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:38:55 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:38:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 17:38:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-04-27 17:38:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 146 msc 0 sec -2016-04-27 17:38:55 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 17:38:55 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 17:38:55 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 17:38:55 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:38:55 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:38:55 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:38:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:38:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:38:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 377 msc 0 sec -2016-04-27 17:39:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:39:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 17:40:41 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 17:40:41 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 17:40:41 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 17:40:41 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:40:41 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:40:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:40:41 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:40:41 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6400f9af -2016-04-27 17:40:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:40:41 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:40:41 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:40:41 DEBUG TemplateModel:83 - 2016-04-27 17:40:41, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:40:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:40:41 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 17:40:42 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:40:42 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:40:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:40:42 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:40:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:40:42 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:40:42 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:40:42 DEBUG TemplateModel:83 - 2016-04-27 17:40:42, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:40:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:40:43 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:40:43 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 125 ms -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 17:40:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 17:40:43 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 17:40:43 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:40:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:40:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@1d5d032 -2016-04-27 17:40:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@2504d034 -2016-04-27 17:40:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@659d589d -2016-04-27 17:40:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@71c2a42a -2016-04-27 17:40:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 104 ms -2016-04-27 17:40:43 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 17:40:43 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 17:40:43 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 17:40:43 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 17:40:43 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 17:40:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:40:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:40:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 17:40:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 22 ms -2016-04-27 17:40:43 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 17:40:43 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:40:43 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 17:40:43 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 17:40:43 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:40:43 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:40:43 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:40:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:40:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:40:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:40:43 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 17:40:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:40:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:40:43 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 17:40:43 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 17:40:43 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 17:40:43 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 17:40:44 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 17:40:44 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 17:40:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 17:40:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:40:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 17:40:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 18 ms -2016-04-27 17:40:44 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 17:40:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:40:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:40:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:40:44 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 17:40:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:40:44 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 17:40:44 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:40:44 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:40:44 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 17:40:44 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:40:44 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 17:40:44 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:40:44 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:40:44 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 17:40:44 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 17:40:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:40:44 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:40:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:40:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:40:44 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 17:40:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 17:40:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:40:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:40:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:40:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:40:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:40:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:40:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:40:44 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:40:44 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:40:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 17:40:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:40:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:40:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:40:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:40:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:40:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:40:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:40:45 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:40:45 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:40:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 17:40:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:40:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:40:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:40:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:40:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:40:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:40:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:40:45 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:40:45 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:40:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 17:40:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:40:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:40:45 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:40:45 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:40:45 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:40:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:40:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:40:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:40:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:40:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:40:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:40:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:40:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:40:45 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:40:45 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 17:40:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:40:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:40:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:40:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:40:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:40:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:40:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:40:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:40:46 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:40:46 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 17:40:46 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 17:40:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:40:46 INFO WorkspaceExplorerServiceImpl:188 - end time - 118 msc 0 sec -2016-04-27 17:40:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:40:46 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:40:46 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:40:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:40:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:40:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:40:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:40:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:40:46 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:40:46 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 17:40:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:40:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:40:46 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 17:40:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:40:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:40:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-04-27 17:40:46 INFO WorkspaceExplorerServiceImpl:188 - end time - 130 msc 0 sec -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:40:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:40:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 17:40:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-04-27 17:40:46 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 17:40:46 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 17:40:46 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 17:40:46 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:40:46 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:40:46 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:40:46 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:40:46 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:40:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:40:46 INFO WorkspaceExplorerServiceImpl:188 - end time - 377 msc 0 sec -2016-04-27 17:41:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:41:36 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 17:42:47 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 17:42:47 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 17:42:47 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 17:42:47 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:42:47 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:42:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:42:47 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:42:47 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@15221941 -2016-04-27 17:42:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:42:47 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:42:47 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:42:47 DEBUG TemplateModel:83 - 2016-04-27 17:42:47, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:42:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:42:47 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 17:42:49 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:42:49 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:42:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:42:49 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:42:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:42:49 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:42:49 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:42:49 DEBUG TemplateModel:83 - 2016-04-27 17:42:49, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:42:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:42:49 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:42:49 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 123 ms -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 17:42:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 17:42:49 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 17:42:49 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:42:49 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:42:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@40dc0de6 -2016-04-27 17:42:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@2901dddf -2016-04-27 17:42:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@20b560fd -2016-04-27 17:42:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2ae4843d -2016-04-27 17:42:49 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 110 ms -2016-04-27 17:42:50 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 17:42:50 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 17:42:50 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 17:42:50 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 17:42:50 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 17:42:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:42:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:42:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 17:42:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-04-27 17:42:50 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 17:42:50 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:42:50 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 17:42:50 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 17:42:50 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:42:50 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:42:50 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:42:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:42:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:42:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:42:50 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 17:42:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:42:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:42:50 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 17:42:50 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 17:42:50 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 17:42:50 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 17:42:50 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 17:42:50 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 17:42:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:42:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:42:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 17:42:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-04-27 17:42:50 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 17:42:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:42:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:42:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:42:50 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 17:42:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:42:50 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 17:42:50 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:42:50 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 17:42:51 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:42:51 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:42:51 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 17:42:51 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:42:51 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:42:51 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:42:51 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:42:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:42:51 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 17:42:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 17:42:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:42:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:42:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:42:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:42:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:42:51 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:42:51 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:42:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 17:42:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:42:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:42:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:42:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:42:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:42:51 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:42:51 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:42:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 17:42:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:42:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:42:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:42:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:42:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:42:51 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:42:51 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:42:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 17:42:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:42:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:42:52 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:42:52 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:42:52 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:42:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:42:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:42:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:42:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:42:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:42:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:42:52 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:42:52 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 17:42:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:42:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:42:52 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 17:42:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 117 msc 0 sec -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:42:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:42:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:42:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:42:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:42:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:42:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:42:52 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:42:52 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 17:42:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:42:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:42:52 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:42:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:42:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:42:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:42:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:42:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:42:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:42:52 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:42:52 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 17:42:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:42:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:42:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:42:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:42:52 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 17:42:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-04-27 17:42:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:42:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 17:42:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 132 msc 0 sec -2016-04-27 17:42:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 35 ms -2016-04-27 17:42:52 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 17:42:52 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 17:42:52 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 17:42:52 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-04-27 17:42:52 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-04-27 17:42:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:42:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:42:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-04-27 17:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 17:42:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 367 msc 0 sec -2016-04-27 17:43:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:43:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:44:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:44:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:45:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:45:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:46:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:46:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:46:57 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 17:46:57 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 17:46:57 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 17:46:57 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:46:57 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:46:57 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-27 17:46:57 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:46:57 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@afb6ae4 -2016-04-27 17:46:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-27 17:46:57 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:46:57 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:46:57 DEBUG TemplateModel:83 - 2016-04-27 17:46:57, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:46:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:46:57 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 17:46:59 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:46:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:46:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:46:59 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:46:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:46:59 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:46:59 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:46:59 DEBUG TemplateModel:83 - 2016-04-27 17:46:59, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:46:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:46:59 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:46:59 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 115 ms -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 17:46:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 17:46:59 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 17:46:59 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:46:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:46:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2a56e41a -2016-04-27 17:46:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@75ee0ca2 -2016-04-27 17:46:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4cec170 -2016-04-27 17:46:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@25293d02 -2016-04-27 17:47:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 107 ms -2016-04-27 17:47:00 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 17:47:00 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 17:47:00 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 17:47:00 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 17:47:00 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 17:47:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:47:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:47:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 17:47:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-04-27 17:47:00 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 17:47:00 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:47:00 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 17:47:00 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 17:47:00 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:47:00 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:47:00 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:47:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-27 17:47:00 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-27 17:47:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:47:00 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 17:47:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:47:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:47:00 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 17:47:00 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 17:47:00 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 17:47:00 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 17:47:00 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 17:47:00 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 17:47:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-04-27 17:47:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:47:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 17:47:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 81 ms -2016-04-27 17:47:00 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 17:47:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-27 17:47:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:47:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:47:00 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 17:47:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:47:00 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 17:47:01 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:47:01 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:47:01 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 17:47:01 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:47:01 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:47:01 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 17:47:01 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 17:47:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:47:01 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:47:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:47:01 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:47:01 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 17:47:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:47:01 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 17:47:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 17:47:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:47:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:47:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:47:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:47:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:47:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:47:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:47:01 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:47:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:47:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 17:47:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:47:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:47:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:47:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:47:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:47:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:47:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:47:01 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:47:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:47:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 17:47:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:47:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:47:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:47:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:47:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:47:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:47:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:47:01 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:47:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:47:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 17:47:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:47:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:47:02 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:47:02 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:47:02 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:47:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:47:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:47:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:47:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:47:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:47:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:47:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:47:02 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 17:47:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:47:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:47:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:47:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:47:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:47:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:47:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:47:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:47:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:47:02 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 17:47:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:47:02 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 17:47:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:47:02 INFO WorkspaceExplorerServiceImpl:188 - end time - 126 msc 0 sec -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:47:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:47:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:47:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:47:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:47:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:47:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:47:02 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:47:02 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 17:47:02 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 17:47:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:47:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:47:02 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:47:02 INFO WorkspaceExplorerServiceImpl:188 - end time - 130 msc 0 sec -2016-04-27 17:47:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:47:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:47:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-27 17:47:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:47:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 17:47:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-04-27 17:47:02 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 17:47:02 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 17:47:02 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 17:47:02 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-27 17:47:02 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-27 17:47:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:47:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:47:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-04-27 17:47:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:47:02 INFO WorkspaceExplorerServiceImpl:188 - end time - 380 msc 0 sec -2016-04-27 17:47:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-27 17:47:52 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-27 17:48:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-27 17:48:47 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-27 17:50:57 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 17:50:57 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 17:50:57 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 17:50:57 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:50:57 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:50:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:50:57 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:50:57 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@55173994 -2016-04-27 17:50:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:50:57 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:50:57 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:50:57 DEBUG TemplateModel:83 - 2016-04-27 17:50:57, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:50:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:50:57 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 17:50:58 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:50:58 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:50:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:50:58 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:50:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:50:58 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:50:58 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:50:58 DEBUG TemplateModel:83 - 2016-04-27 17:50:58, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:50:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:50:58 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:50:59 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 137 ms -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 17:50:59 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 17:50:59 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 17:50:59 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:50:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 17:50:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@237020dc -2016-04-27 17:50:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@322dabb -2016-04-27 17:50:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@ca1225c -2016-04-27 17:50:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@5d681f9f -2016-04-27 17:50:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 103 ms -2016-04-27 17:50:59 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 17:50:59 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 17:50:59 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 17:50:59 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 17:50:59 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 17:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:50:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:50:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 17:50:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 29 ms -2016-04-27 17:50:59 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 17:50:59 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:50:59 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 17:50:59 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 17:51:00 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:51:00 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:51:00 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:51:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:51:00 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:51:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:51:00 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 17:51:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:00 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 17:51:00 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 17:51:00 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 17:51:00 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 17:51:00 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 17:51:00 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 17:51:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 17:51:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:51:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 17:51:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 83 ms -2016-04-27 17:51:00 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 17:51:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:51:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:00 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 17:51:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:00 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 17:51:00 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:51:00 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 17:51:01 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:51:01 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:51:01 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 17:51:01 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 17:51:01 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 17:51:01 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 17:51:01 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 17:51:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:01 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:01 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 17:51:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 17:51:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:15 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:51:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 17:51:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:15 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:51:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 17:51:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:15 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:15 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:51:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 17:51:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:16 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:51:16 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:51:16 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:51:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:51:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:16 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:16 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 17:51:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:51:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:51:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:16 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:16 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 17:51:16 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 17:51:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 132 msc 0 sec -2016-04-27 17:51:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:51:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 17:51:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:16 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:16 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 17:51:16 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 17:51:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:16 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:51:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 114 msc 0 sec -2016-04-27 17:51:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:51:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:51:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:51:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:51:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 17:51:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-04-27 17:51:16 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 17:51:16 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 17:51:16 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 17:51:16 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:51:16 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:51:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:51:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 17:51:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 17:51:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:51:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 373 msc 0 sec -2016-04-27 17:51:25 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:51:25 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:51:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 17:51:25 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:51:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 17:51:25 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:51:25 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:51:25 DEBUG TemplateModel:83 - 2016-04-27 17:51:25, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:51:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:51:25 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 17:51:26 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 17:51:26 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 17:51:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:51:26 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 17:51:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:51:26 INFO ASLSession:352 - Logging the entrance -2016-04-27 17:51:26 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 17:51:26 DEBUG TemplateModel:83 - 2016-04-27 17:51:26, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 17:51:26 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:51:26 INFO DiscoveryDelegate:77 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 (cached) -2016-04-27 17:51:27 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 17:51:27 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 17:51:27 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 17:51:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:51:27 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 17:51:27 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 17:51:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 37 ms -2016-04-27 17:51:27 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 17:51:27 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:51:27 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 17:51:27 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 17:51:27 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 17:51:27 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 17:51:27 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:51:27 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:51:27 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:51:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 17:51:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 17:51:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 17:51:27 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 17:51:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:27 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:32 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 17:51:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 17:51:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:32 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:51:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 17:51:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:33 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:33 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:51:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 17:51:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:33 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:33 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 17:51:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 17:51:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:33 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 17:51:33 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 17:51:33 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 17:51:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-27 17:51:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-04-27 17:51:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-04-27 17:51:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:33 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:34 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 17:51:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:34 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 17:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:51:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 17:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 17:51:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:34 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:34 INFO WorkspaceExplorerServiceImpl:188 - end time - 91 msc 0 sec -2016-04-27 17:51:34 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 17:51:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:34 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 17:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:51:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 17:51:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 17:51:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 17:51:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 17:51:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 17:51:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 17:51:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 17:51:34 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 17:51:34 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 17:51:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 17:51:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 17:51:34 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 17:51:34 INFO WorkspaceExplorerServiceImpl:188 - end time - 107 msc 0 sec -2016-04-27 17:51:34 INFO WorkspaceExplorerServiceImpl:188 - end time - 229 msc 0 sec -2016-04-27 18:17:07 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 18:17:07 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 18:17:07 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 18:17:07 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 18:17:07 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 18:17:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 18:17:07 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 18:17:07 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@77c12805 -2016-04-27 18:17:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 18:17:07 INFO ASLSession:352 - Logging the entrance -2016-04-27 18:17:07 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 18:17:07 DEBUG TemplateModel:83 - 2016-04-27 18:17:07, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 18:17:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 18:17:07 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 18:17:09 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 18:17:09 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 18:17:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 18:17:09 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 18:17:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 18:17:09 INFO ASLSession:352 - Logging the entrance -2016-04-27 18:17:09 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 18:17:09 DEBUG TemplateModel:83 - 2016-04-27 18:17:09, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 18:17:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 18:17:10 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 18:17:10 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 127 ms -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 18:17:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 18:17:10 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 18:17:11 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 18:17:11 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 18:17:11 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 18:17:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 18:17:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 18:17:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 18:17:11 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 18:17:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:17:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:17:11 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 18:17:11 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 18:17:11 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 18:17:11 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 18:17:11 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 18:17:11 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 18:17:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-04-27 18:17:11 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:17:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:17:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 18:17:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 18:17:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7b28c6b9 -2016-04-27 18:17:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@26b1e772 -2016-04-27 18:17:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@52535fb3 -2016-04-27 18:17:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@49cc84a5 -2016-04-27 18:17:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 161 ms -2016-04-27 18:17:12 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 18:17:13 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 18:17:13 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 18:17:13 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 18:17:13 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 18:17:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 18:17:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:17:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 18:17:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 17 ms -2016-04-27 18:17:13 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 18:17:13 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 18:17:13 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 18:17:13 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 18:17:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 4182 ms -2016-04-27 18:17:16 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 18:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 18:17:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:17:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:17:16 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 18:17:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:17:16 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 18:17:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 18:17:18 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 18:17:21 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 18:17:21 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 18:17:21 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 18:17:21 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 18:17:21 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 18:17:21 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 18:17:21 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 18:17:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:17:21 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:17:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:17:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:17:21 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 18:17:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 18:17:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:17:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:17:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:17:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:17:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:17:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:17:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:17:21 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:17:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 18:17:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 18:17:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:17:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:17:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:17:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:17:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:17:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:17:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:17:22 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:17:22 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 18:17:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 18:17:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:17:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:17:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:17:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:17:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:17:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:17:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:17:22 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:17:22 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 18:17:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 18:17:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:17:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:17:23 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 18:17:23 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 18:17:23 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 18:17:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 18:17:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:17:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:17:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:17:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:17:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:17:23 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:17:23 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 18:17:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 18:17:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 18:17:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:17:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:17:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:17:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:17:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:17:23 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:17:23 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 18:17:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:17:23 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 18:17:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 202 msc 0 sec -2016-04-27 18:17:23 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 18:17:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 18:17:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:17:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:17:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:17:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:17:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:17:23 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:17:23 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 18:17:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:17:23 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 18:17:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:17:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 18:17:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-04-27 18:17:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 171 msc 0 sec -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-04-27 18:17:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:17:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 18:17:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 22 ms -2016-04-27 18:17:23 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 18:17:23 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 18:17:23 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 18:17:23 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-04-27 18:17:23 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-04-27 18:17:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:17:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 18:17:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-04-27 18:17:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 18:17:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 433 msc 0 sec -2016-04-27 18:18:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 18:18:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 18:18:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 18:18:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 18:19:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 18:19:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 18:20:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 18:20:47 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 18:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-04-27 18:21:42 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-04-27 18:22:15 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-04-27 18:22:15 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-04-27 18:22:15 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-04-27 18:22:15 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 18:22:15 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 18:22:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 18:22:15 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 18:22:15 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@23c47222 -2016-04-27 18:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 18:22:15 INFO ASLSession:352 - Logging the entrance -2016-04-27 18:22:15 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 18:22:15 DEBUG TemplateModel:83 - 2016-04-27 18:22:15, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 18:22:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 18:22:15 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-04-27 18:22:17 INFO SessionUtil:49 - no user found in session, use test user -2016-04-27 18:22:17 DEBUG ASLSession:302 - Scope is null, returning null -2016-04-27 18:22:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-04-27 18:22:17 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-04-27 18:22:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 18:22:17 INFO ASLSession:352 - Logging the entrance -2016-04-27 18:22:17 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-04-27 18:22:17 DEBUG TemplateModel:83 - 2016-04-27 18:22:17, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-04-27 18:22:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 18:22:17 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 18:22:17 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 123 ms -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-04-27 18:22:17 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-04-27 18:22:17 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-04-27 18:22:17 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:22:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-04-27 18:22:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@479d19ca -2016-04-27 18:22:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@2cffbb6d -2016-04-27 18:22:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@46a3f828 -2016-04-27 18:22:17 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@22d93933 -2016-04-27 18:22:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 107 ms -2016-04-27 18:22:17 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-04-27 18:22:17 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-04-27 18:22:17 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-04-27 18:22:17 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-04-27 18:22:17 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-04-27 18:22:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-04-27 18:22:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:22:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-04-27 18:22:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 20 ms -2016-04-27 18:22:17 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-04-27 18:22:17 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 18:22:17 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-04-27 18:22:17 INFO StatWPSClientSession:84 - CONNECT -2016-04-27 18:22:18 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 18:22:18 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 18:22:18 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 18:22:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 18:22:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-04-27 18:22:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-04-27 18:22:18 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-04-27 18:22:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:22:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:22:18 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-04-27 18:22:18 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-04-27 18:22:18 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-04-27 18:22:18 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-04-27 18:22:18 DEBUG JCRRepository:271 - Initialize repository -2016-04-27 18:22:18 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-04-27 18:22:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-04-27 18:22:18 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:22:18 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-04-27 18:22:18 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 20 ms -2016-04-27 18:22:18 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-04-27 18:22:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-04-27 18:22:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:22:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:22:18 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-04-27 18:22:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:22:18 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-04-27 18:22:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-04-27 18:22:18 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF, name=Lof, briefDescription=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., description=Local Outlier Factor (LOF). A clustering algorithm for real valued vectors that relies on Local Outlier Factor algorithm, i.e. an algorithm for finding anomalous data points by measuring the local deviation of a given data point with respect to its neighbours. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS, name=Xmeans, briefDescription=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., description=A clustering algorithm for occurrence points that relies on the X-Means algorithm, i.e. an extended version of the K-Means algorithm improved by an Improve-Structure part. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-04-27 18:22:18 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 18:22:19 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 18:22:19 INFO JCRRepository:377 - skip init in JCRRepository -2016-04-27 18:22:19 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-04-27 18:22:19 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-04-27 18:22:19 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:22:19 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:22:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:22:19 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-04-27 18:22:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-04-27 18:22:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:22:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:22:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:22:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:22:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:22:19 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:22:19 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 18:22:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-04-27 18:22:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:22:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:22:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:22:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:22:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:22:19 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:22:19 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 18:22:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-04-27 18:22:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:22:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:22:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:22:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:22:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:22:19 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:22:19 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-04-27 18:22:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-04-27 18:22:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:22:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:22:20 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-04-27 18:22:20 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-04-27 18:22:20 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 18:22:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-04-27 18:22:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:22:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:22:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:22:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:22:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:22:20 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:22:20 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-04-27 18:22:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:22:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 18:22:20 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 18:22:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:22:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:22:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:22:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:22:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:22:20 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:22:20 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-04-27 18:22:20 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-04-27 18:22:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:22:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 132 msc 0 sec -2016-04-27 18:22:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 18:22:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-04-27 18:22:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-04-27 18:22:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-04-27 18:22:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-04-27 18:22:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-04-27 18:22:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-04-27 18:22:20 DEBUG JCRHomeManager:97 - User is already logged -2016-04-27 18:22:20 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-04-27 18:22:20 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-04-27 18:22:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-04-27 18:22:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-04-27 18:22:20 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 18:22:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:22:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 18:22:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 129 msc 0 sec -2016-04-27 18:22:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 18:22:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:22:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-04-27 18:22:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-04-27 18:22:20 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-04-27 18:22:20 INFO ISClientConnector:82 - found only one RR, take it -2016-04-27 18:22:20 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-04-27 18:22:20 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 18:22:20 DEBUG StorageClient:517 - set scope: /gcube -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 18:22:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-04-27 18:22:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-04-27 18:22:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-04-27 18:22:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-04-27 18:22:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 333 msc 0 sec -2016-05-02 12:34:03 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 12:34:03 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 12:34:03 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 12:34:03 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 12:34:03 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 12:34:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 12:34:03 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 12:34:03 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6532be37 -2016-05-02 12:34:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 12:34:03 INFO ASLSession:352 - Logging the entrance -2016-05-02 12:34:03 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 12:34:03 DEBUG TemplateModel:83 - 2016-05-02 12:34:03, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 12:34:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 12:34:03 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 12:34:06 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 12:34:06 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 12:34:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 12:34:06 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 12:34:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 12:34:06 INFO ASLSession:352 - Logging the entrance -2016-05-02 12:34:06 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 12:34:06 DEBUG TemplateModel:83 - 2016-05-02 12:34:06, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 12:34:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 12:34:06 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 12:34:06 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 117 ms -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 12:34:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 12:34:07 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 12:34:07 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 12:34:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 12:34:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@f2eba2b -2016-05-02 12:34:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@1ab39064 -2016-05-02 12:34:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@6b492547 -2016-05-02 12:34:07 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@3a99bb -2016-05-02 12:34:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 214 ms -2016-05-02 12:34:07 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 12:34:08 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 12:34:08 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 12:34:08 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 12:34:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 12:34:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 12:34:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 12:34:08 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 12:34:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:08 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 12:34:08 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 12:34:08 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 12:34:08 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 12:34:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 12:34:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 12:34:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 12:34:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-05-02 12:34:08 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 12:34:08 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 12:34:08 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 12:34:08 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 12:34:08 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 12:34:08 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 12:34:08 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 12:34:08 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 12:34:08 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 12:34:08 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 12:34:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 12:34:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 12:34:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 12:34:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 78 ms -2016-05-02 12:34:08 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 12:34:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 12:34:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:08 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 12:34:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:08 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 12:34:09 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 12:34:09 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 12:34:09 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 12:34:10 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 12:34:10 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 12:34:10 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 12:34:10 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 12:34:10 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 12:34:10 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 12:34:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:10 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 12:34:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 12:34:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:10 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 12:34:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 12:34:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:11 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 12:34:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 12:34:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:11 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 12:34:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 12:34:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:11 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 12:34:11 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 12:34:11 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 12:34:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:34:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 12:34:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:34:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:12 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 12:34:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:34:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:34:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:12 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 12:34:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 12:34:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:12 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 12:34:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:12 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 12:34:12 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 12:34:12 INFO WorkspaceExplorerServiceImpl:188 - end time - 219 msc 0 sec -2016-05-02 12:34:12 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 12:34:12 INFO WorkspaceExplorerServiceImpl:188 - end time - 187 msc 0 sec -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:34:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 12:34:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 12:34:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 12:34:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 12:34:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 12:34:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 22 ms -2016-05-02 12:34:12 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 12:34:12 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 12:34:12 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 12:34:12 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 12:34:12 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 12:34:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 12:34:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 12:34:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 12:34:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:34:12 INFO WorkspaceExplorerServiceImpl:188 - end time - 443 msc 0 sec -2016-05-02 12:34:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 12:34:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 12:34:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 12:34:17 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 12:34:17 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 12:34:17 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 12:34:18 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 12:34:18 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 12:34:18 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 12:34:18 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 12:34:18 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 12:34:18 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 12:34:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 12:34:18 DEBUG WPS2SM:279 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 12:34:18 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-05-02 12:34:18 DEBUG WPS2SM:200 - MimeType: text/xml -2016-05-02 12:34:18 DEBUG WPS2SM:201 - Schema: null -2016-05-02 12:34:18 DEBUG WPS2SM:202 - Encoding: null -2016-05-02 12:34:18 DEBUG WPS2SM:290 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 12:34:18 DEBUG WPS2SM:291 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 12:34:18 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 12:34:18 DEBUG SClient4WPS:653 - InputParameter: FileParameter [mimeType=text/xml, value=null, name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=FILE] -2016-05-02 12:34:18 DEBUG WPS2SM:254 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 12:34:18 DEBUG WPS2SM:93 - WPS type: -2016-05-02 12:34:18 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 12:34:18 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 12:34:18 DEBUG WPS2SM:147 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 12:34:18 DEBUG WPS2SM:148 - Machter find: true -2016-05-02 12:34:18 DEBUG WPS2SM:149 - Machter group: a sequence of values separated by | -2016-05-02 12:34:18 DEBUG WPS2SM:150 - Machter start: 47 -2016-05-02 12:34:18 DEBUG WPS2SM:151 - Machter end: 82 -2016-05-02 12:34:18 DEBUG WPS2SM:152 - Machter Group Count: 1 -2016-05-02 12:34:18 DEBUG WPS2SM:155 - Matcher separator: | -2016-05-02 12:34:18 DEBUG WPS2SM:290 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 12:34:18 DEBUG WPS2SM:291 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 12:34:18 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 12:34:18 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 12:34:18 DEBUG SClient4WPS:657 - Parameters: [FileParameter [mimeType=text/xml, value=null, name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=FILE], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:34:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:34:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 12:34:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 12:34:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 12:34:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 12:34:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 12:34:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:34:18 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:34:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 12:34:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 12:34:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 12:34:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 12:34:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 12:34:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 12:34:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 12:34:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 12:34:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:34:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:34:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 12:34:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 12:34:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 12:34:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 12:34:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 12:34:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 12:34:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 12:34:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 12:34:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 12:34:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 12:34:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 12:34:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 12:34:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 384 msc 0 sec -2016-05-02 12:34:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 12:34:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 12:34:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 12:35:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 12:35:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 12:36:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:36:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:37:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 12:37:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 12:38:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:38:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 12:39:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:39:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:40:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 12:40:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 12:41:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 12:41:24 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 12:42:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 12:42:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 12:43:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 12:43:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 12:44:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 12:44:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 12:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 12:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 12:45:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:45:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 12:46:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:46:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 12:47:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:47:49 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 12:48:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 12:48:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 12:49:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 12:49:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 12:50:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 12:50:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 12:51:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 12:51:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 12:52:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:52:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:53:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 12:53:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 12:54:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:54:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:55:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:55:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:56:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:56:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:56:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:56:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 12:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:57:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 12:58:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 12:58:49 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 12:59:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 12:59:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 13:00:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:00:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 13:00:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 13:00:47 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 13:00:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 13:00:47 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-02 13:00:47 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:00:47 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 13:00:48 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 13:00:48 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 13:00:48 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 13:00:48 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-02 13:00:48 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-02 13:00:48 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-02 13:00:48 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-02 13:00:48 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 13:00:48 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 13:00:48 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 13:00:48 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:00:48 DEBUG WPS2SM:279 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-02 13:00:48 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-05-02 13:00:48 DEBUG WPS2SM:200 - MimeType: text/xml -2016-05-02 13:00:48 DEBUG WPS2SM:201 - Schema: null -2016-05-02 13:00:48 DEBUG WPS2SM:202 - Encoding: null -2016-05-02 13:00:48 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 13:00:48 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-02 13:00:48 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:48 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 13:00:48 DEBUG WPS2SM:254 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-02 13:00:48 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:48 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:00:48 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:00:48 DEBUG WPS2SM:111 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 13:00:48 DEBUG WPS2SM:112 - Machter find: true -2016-05-02 13:00:48 DEBUG WPS2SM:113 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-02 13:00:48 DEBUG WPS2SM:114 - Machter start: 31 -2016-05-02 13:00:48 DEBUG WPS2SM:115 - Machter end: 103 -2016-05-02 13:00:48 DEBUG WPS2SM:116 - Machter Group Count: 2 -2016-05-02 13:00:48 DEBUG WPS2SM:118 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-02 13:00:48 DEBUG WPS2SM:121 - Matcher separator: | -2016-05-02 13:00:48 DEBUG WPS2SM:290 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-02 13:00:48 DEBUG WPS2SM:291 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-02 13:00:48 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:48 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 13:00:48 DEBUG WPS2SM:254 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-02 13:00:48 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:48 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:00:48 DEBUG WPS2SM:101 - Guessed default value: OccCluster_ -2016-05-02 13:00:48 DEBUG WPS2SM:290 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-02 13:00:48 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-02 13:00:48 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:48 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-02 13:00:48 DEBUG WPS2SM:254 - Conversion to SM Type->epsilon is a Literal Input -2016-05-02 13:00:48 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:48 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:00:48 DEBUG WPS2SM:101 - Guessed default value: 10 -2016-05-02 13:00:48 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-02 13:00:48 DEBUG WPS2SM:291 - Conversion to SM Type->Name:epsilon -2016-05-02 13:00:48 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:48 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 13:00:48 DEBUG WPS2SM:254 - Conversion to SM Type->min_points is a Literal Input -2016-05-02 13:00:48 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:48 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:00:48 DEBUG WPS2SM:101 - Guessed default value: 1 -2016-05-02 13:00:48 DEBUG WPS2SM:290 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-02 13:00:48 DEBUG WPS2SM:291 - Conversion to SM Type->Name:min_points -2016-05-02 13:00:48 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:48 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 13:00:48 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:00:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:00:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:00:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:00:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:00:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:00:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:00:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:00:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:00:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:00:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:00:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:00:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:00:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:00:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:00:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:00:48 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 13:00:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 13:00:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:00:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:00:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:00:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:00:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:00:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:00:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:00:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:00:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:00:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:00:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:00:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:00:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:00:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:00:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 13:00:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:00:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 13:00:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:00:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 13:00:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:48 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 13:00:48 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 13:00:48 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 13:00:48 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 13:00:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:00:48 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 13:00:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:00:48 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 13:00:48 INFO WorkspaceExplorerServiceImpl:142 - end time - 235 msc 0 sec -2016-05-02 13:00:48 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 13:00:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 13:00:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 13:00:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 13:00:55 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS -2016-05-02 13:00:55 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:00:55 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 13:00:56 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS - KMEANS - A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - k - expected Number of Clusters - Name of the parameter: k. expected Number of Clusters - - - - 3 - - - - max_runs - max runs of the clustering procedure - Name of the parameter: max_runs. max runs of the clustering procedure - - - - 10 - - - - max_optimization_steps - max number of internal optimization steps - Name of the parameter: max_optimization_steps. max number of internal optimization steps - - - - 5 - - - - min_points - number of points which define an outlier set - Name of the parameter: min_points. number of points which define an outlier set - - - - 2 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 13:00:56 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 13:00:56 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 13:00:56 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-02 13:00:56 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-02 13:00:56 DEBUG SClient4WPS:300 - WPSClient->Input: - k - expected Number of Clusters - Name of the parameter: k. expected Number of Clusters - - - - 3 - - -2016-05-02 13:00:56 DEBUG SClient4WPS:300 - WPSClient->Input: - max_runs - max runs of the clustering procedure - Name of the parameter: max_runs. max runs of the clustering procedure - - - - 10 - - -2016-05-02 13:00:56 DEBUG SClient4WPS:300 - WPSClient->Input: - max_optimization_steps - max number of internal optimization steps - Name of the parameter: max_optimization_steps. max number of internal optimization steps - - - - 5 - - -2016-05-02 13:00:56 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - number of points which define an outlier set - Name of the parameter: min_points. number of points which define an outlier set - - - - 2 - - -2016-05-02 13:00:56 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 13:00:56 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 13:00:56 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 13:00:56 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:00:56 DEBUG WPS2SM:279 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-02 13:00:56 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-05-02 13:00:56 DEBUG WPS2SM:200 - MimeType: text/xml -2016-05-02 13:00:56 DEBUG WPS2SM:201 - Schema: null -2016-05-02 13:00:56 DEBUG WPS2SM:202 - Encoding: null -2016-05-02 13:00:56 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 13:00:56 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-02 13:00:56 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:56 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 13:00:56 DEBUG WPS2SM:254 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-02 13:00:56 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:56 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:00:56 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:00:56 DEBUG WPS2SM:111 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 13:00:56 DEBUG WPS2SM:112 - Machter find: true -2016-05-02 13:00:56 DEBUG WPS2SM:113 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-02 13:00:56 DEBUG WPS2SM:114 - Machter start: 31 -2016-05-02 13:00:56 DEBUG WPS2SM:115 - Machter end: 103 -2016-05-02 13:00:56 DEBUG WPS2SM:116 - Machter Group Count: 2 -2016-05-02 13:00:56 DEBUG WPS2SM:118 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-02 13:00:56 DEBUG WPS2SM:121 - Matcher separator: | -2016-05-02 13:00:56 DEBUG WPS2SM:290 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-02 13:00:56 DEBUG WPS2SM:291 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-02 13:00:56 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:56 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 13:00:56 DEBUG WPS2SM:254 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-02 13:00:56 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:56 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:00:56 DEBUG WPS2SM:101 - Guessed default value: OccCluster_ -2016-05-02 13:00:56 DEBUG WPS2SM:290 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-02 13:00:56 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-02 13:00:56 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:56 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-02 13:00:56 DEBUG WPS2SM:254 - Conversion to SM Type->k is a Literal Input -2016-05-02 13:00:56 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:56 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:00:56 DEBUG WPS2SM:101 - Guessed default value: 3 -2016-05-02 13:00:56 DEBUG WPS2SM:290 - Conversion to SM Type->Title:expected Number of Clusters -2016-05-02 13:00:56 DEBUG WPS2SM:291 - Conversion to SM Type->Name:k -2016-05-02 13:00:56 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:56 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT] -2016-05-02 13:00:56 DEBUG WPS2SM:254 - Conversion to SM Type->max_runs is a Literal Input -2016-05-02 13:00:56 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:56 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:00:56 DEBUG WPS2SM:101 - Guessed default value: 10 -2016-05-02 13:00:56 DEBUG WPS2SM:290 - Conversion to SM Type->Title:max runs of the clustering procedure -2016-05-02 13:00:56 DEBUG WPS2SM:291 - Conversion to SM Type->Name:max_runs -2016-05-02 13:00:56 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:56 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 13:00:56 DEBUG WPS2SM:254 - Conversion to SM Type->max_optimization_steps is a Literal Input -2016-05-02 13:00:56 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:56 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:00:56 DEBUG WPS2SM:101 - Guessed default value: 5 -2016-05-02 13:00:56 DEBUG WPS2SM:290 - Conversion to SM Type->Title:max number of internal optimization steps -2016-05-02 13:00:56 DEBUG WPS2SM:291 - Conversion to SM Type->Name:max_optimization_steps -2016-05-02 13:00:56 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:56 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 13:00:56 DEBUG WPS2SM:254 - Conversion to SM Type->min_points is a Literal Input -2016-05-02 13:00:56 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:00:56 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:00:56 DEBUG WPS2SM:101 - Guessed default value: 2 -2016-05-02 13:00:56 DEBUG WPS2SM:290 - Conversion to SM Type->Title:number of points which define an outlier set -2016-05-02 13:00:56 DEBUG WPS2SM:291 - Conversion to SM Type->Name:min_points -2016-05-02 13:00:56 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:00:56 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-02 13:00:56 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT]] -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:00:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:00:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:00:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:00:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:00:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:00:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:00:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:00:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:00:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:00:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:00:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:00:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:00:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:00:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:00:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:00:56 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 13:00:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 13:00:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:00:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 13:00:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:00:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:00:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:00:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 13:00:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:00:56 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 13:00:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 13:00:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:00:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:00:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:00:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:00:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:00:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:00:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:00:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:00:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 13:00:56 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 13:00:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:00:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:00:56 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 13:00:56 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 13:00:56 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 13:00:56 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 13:00:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:00:56 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 13:00:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:00:57 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 13:00:57 INFO WorkspaceExplorerServiceImpl:142 - end time - 236 msc 0 sec -2016-05-02 13:00:57 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 13:00:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:00:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 13:00:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 13:00:59 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY -2016-05-02 13:00:59 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:00:59 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 13:01:00 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY - CMSY - An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner. - - - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - - - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - - - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 13:01:00 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 13:01:00 DEBUG SClient4WPS:300 - WPSClient->Input: - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - -2016-05-02 13:01:00 DEBUG SClient4WPS:300 - WPSClient->Input: - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - -2016-05-02 13:01:00 DEBUG SClient4WPS:300 - WPSClient->Input: - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - -2016-05-02 13:01:00 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 13:01:00 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 13:01:00 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:01:00 DEBUG WPS2SM:254 - Conversion to SM Type->IDsFile is a Literal Input -2016-05-02 13:01:00 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:00 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:00 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:00 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK -2016-05-02 13:01:00 DEBUG WPS2SM:291 - Conversion to SM Type->Name:IDsFile -2016-05-02 13:01:00 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 13:01:00 DEBUG WPS2SM:254 - Conversion to SM Type->StocksFile is a Literal Input -2016-05-02 13:01:00 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:00 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:00 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:00 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY -2016-05-02 13:01:00 DEBUG WPS2SM:291 - Conversion to SM Type->Name:StocksFile -2016-05-02 13:01:00 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 13:01:00 DEBUG WPS2SM:254 - Conversion to SM Type->SelectedStock is a Literal Input -2016-05-02 13:01:00 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:00 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:00 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:00 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The stock on which the procedure has to focus e.g. HLH_M07 -2016-05-02 13:01:00 DEBUG WPS2SM:291 - Conversion to SM Type->Name:SelectedStock -2016-05-02 13:01:00 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:00 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 13:01:00 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT]] -2016-05-02 13:01:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 13:01:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 13:01:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 13:01:16 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING -2016-05-02 13:01:16 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:01:16 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 13:01:16 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt - - - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - maxent_ - - - - SpeciesName - The name of the species to model and the occurrence records refer to - Name of the parameter: SpeciesName. The name of the species to model and the occurrence records refer to - - - - generic_species - - - - MaxIterations - The number of learning iterations of the MaxEnt algorithm - Name of the parameter: MaxIterations. The number of learning iterations of the MaxEnt algorithm - - - - 1000 - - - - DefaultPrevalence - A priori probability of presence at ordinary occurrence points - Name of the parameter: DefaultPrevalence. A priori probability of presence at ordinary occurrence points - - - - 0.5 - - - - OccurrencesTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrencesTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - LongitudeColumn - The column containing longitude values [the name of a column from OccurrencesTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrencesTable] - - - - decimallongitude - - - - LatitudeColumn - The column containing latitude values [the name of a column from OccurrencesTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrencesTable] - - - - decimallatitude - - - - XResolution - Model projection resolution on the X axis in decimal degrees - Name of the parameter: XResolution. Model projection resolution on the X axis in decimal degrees - - - - 1 - - - - YResolution - Model projection resolution on the Y axis in decimal degrees - Name of the parameter: YResolution. Model projection resolution on the Y axis in decimal degrees - - - - 1 - - - - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - - - - - - - Z - Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - - - TimeIndex - Time Index. The default is the first time indexed in the input environmental datasets - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed in the input environmental datasets - - - - 0 - - - - - - Best Threshold - Best threshold for transforming MaxEnt values into 0/1 probability assignments - Name of the parameter: Best Threshold. Best threshold for transforming MaxEnt values into 0/1 probability assignments - - - - - - Estimated Prevalence - The a posteriori estimated prevalence of the species - Name of the parameter: Estimated Prevalence. The a posteriori estimated prevalence of the species - - - - - - Variables contributions - The contribution of each variable to the MaxEnt values estimates - Name of the parameter: Variables contributions. The contribution of each variable to the MaxEnt values estimates - - - - - - Variables Permutations Importance - The importance of the permutations of the variables during the training - Name of the parameter: Variables Permutations Importance. The importance of the permutations of the variables during the training - - - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - Name of the parameter: ASCII Maps of the environmental layers for checking features aligments. ASCII Maps of the environmental layers for checking features aligments - - - - application/d4science - - - - - application/d4science - - - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable7. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 13:01:16 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - maxent_ - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - SpeciesName - The name of the species to model and the occurrence records refer to - Name of the parameter: SpeciesName. The name of the species to model and the occurrence records refer to - - - - generic_species - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxIterations - The number of learning iterations of the MaxEnt algorithm - Name of the parameter: MaxIterations. The number of learning iterations of the MaxEnt algorithm - - - - 1000 - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - DefaultPrevalence - A priori probability of presence at ordinary occurrence points - Name of the parameter: DefaultPrevalence. A priori probability of presence at ordinary occurrence points - - - - 0.5 - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencesTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrencesTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - LongitudeColumn - The column containing longitude values [the name of a column from OccurrencesTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrencesTable] - - - - decimallongitude - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - LatitudeColumn - The column containing latitude values [the name of a column from OccurrencesTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrencesTable] - - - - decimallatitude - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - XResolution - Model projection resolution on the X axis in decimal degrees - Name of the parameter: XResolution. Model projection resolution on the X axis in decimal degrees - - - - 1 - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - YResolution - Model projection resolution on the Y axis in decimal degrees - Name of the parameter: YResolution. Model projection resolution on the Y axis in decimal degrees - - - - 1 - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - Z - Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - -2016-05-02 13:01:16 DEBUG SClient4WPS:300 - WPSClient->Input: - TimeIndex - Time Index. The default is the first time indexed in the input environmental datasets - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed in the input environmental datasets - - - - 0 - - -2016-05-02 13:01:16 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 13:01:16 DEBUG SClient4WPS:307 - WPSClient->Output: - Best Threshold - Best threshold for transforming MaxEnt values into 0/1 probability assignments - Name of the parameter: Best Threshold. Best threshold for transforming MaxEnt values into 0/1 probability assignments - - - - -2016-05-02 13:01:16 DEBUG SClient4WPS:307 - WPSClient->Output: - Estimated Prevalence - The a posteriori estimated prevalence of the species - Name of the parameter: Estimated Prevalence. The a posteriori estimated prevalence of the species - - - - -2016-05-02 13:01:16 DEBUG SClient4WPS:307 - WPSClient->Output: - Variables contributions - The contribution of each variable to the MaxEnt values estimates - Name of the parameter: Variables contributions. The contribution of each variable to the MaxEnt values estimates - - - - -2016-05-02 13:01:16 DEBUG SClient4WPS:307 - WPSClient->Output: - Variables Permutations Importance - The importance of the permutations of the variables during the training - Name of the parameter: Variables Permutations Importance. The importance of the permutations of the variables during the training - - - - -2016-05-02 13:01:16 DEBUG SClient4WPS:307 - WPSClient->Output: - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - Name of the parameter: ASCII Maps of the environmental layers for checking features aligments. ASCII Maps of the environmental layers for checking features aligments - - - - application/d4science - - - - - application/d4science - - - - -2016-05-02 13:01:16 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable7. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 13:01:16 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 13:01:16 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: maxent_ -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The name of the table to produce -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OutputTableLabel -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->SpeciesName is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: generic_species -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The name of the species to model and the occurrence records refer to -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:SpeciesName -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->MaxIterations is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: 1000 -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The number of learning iterations of the MaxEnt algorithm -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:MaxIterations -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->DefaultPrevalence is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.Double -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: 0.5 -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:A priori probability of presence at ordinary occurrence points -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:DefaultPrevalence -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 13:01:16 DEBUG WPS2SM:279 - Conversion to SM Type->OccurrencesTable is a Complex Input -2016-05-02 13:01:16 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-05-02 13:01:16 DEBUG WPS2SM:200 - MimeType: text/xml -2016-05-02 13:01:16 DEBUG WPS2SM:201 - Schema: null -2016-05-02 13:01:16 DEBUG WPS2SM:202 - Encoding: null -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencesTable -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencesTable, description=A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->LongitudeColumn is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: decimallongitude -2016-05-02 13:01:16 DEBUG WPS2SM:130 - Machter title: The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude] -2016-05-02 13:01:16 DEBUG WPS2SM:131 - Machter find: true -2016-05-02 13:01:16 DEBUG WPS2SM:132 - Machter group: the name of a column from OccurrencesTable -2016-05-02 13:01:16 DEBUG WPS2SM:133 - Machter start: 40 -2016-05-02 13:01:16 DEBUG WPS2SM:134 - Machter end: 82 -2016-05-02 13:01:16 DEBUG WPS2SM:135 - Machter Group Count: 1 -2016-05-02 13:01:16 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The column containing longitude values [the name of a column from OccurrencesTable] -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:LongitudeColumn -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->LatitudeColumn is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: decimallatitude -2016-05-02 13:01:16 DEBUG WPS2SM:130 - Machter title: The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude] -2016-05-02 13:01:16 DEBUG WPS2SM:131 - Machter find: true -2016-05-02 13:01:16 DEBUG WPS2SM:132 - Machter group: the name of a column from OccurrencesTable -2016-05-02 13:01:16 DEBUG WPS2SM:133 - Machter start: 39 -2016-05-02 13:01:16 DEBUG WPS2SM:134 - Machter end: 81 -2016-05-02 13:01:16 DEBUG WPS2SM:135 - Machter Group Count: 1 -2016-05-02 13:01:16 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The column containing latitude values [the name of a column from OccurrencesTable] -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:LatitudeColumn -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->XResolution is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.Double -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: 1 -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Model projection resolution on the X axis in decimal degrees -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:XResolution -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->YResolution is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.Double -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: 1 -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Model projection resolution on the Y axis in decimal degrees -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:YResolution -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->Layers is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:16 DEBUG WPS2SM:147 - Machter title: The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 13:01:16 DEBUG WPS2SM:148 - Machter find: true -2016-05-02 13:01:16 DEBUG WPS2SM:149 - Machter group: a sequence of values separated by | -2016-05-02 13:01:16 DEBUG WPS2SM:150 - Machter start: 501 -2016-05-02 13:01:16 DEBUG WPS2SM:151 - Machter end: 536 -2016-05-02 13:01:16 DEBUG WPS2SM:152 - Machter Group Count: 1 -2016-05-02 13:01:16 DEBUG WPS2SM:155 - Matcher separator: | -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:Layers -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->Z is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.Double -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: 0 -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:Z -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 13:01:16 DEBUG WPS2SM:254 - Conversion to SM Type->TimeIndex is a Literal Input -2016-05-02 13:01:16 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:16 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:01:16 DEBUG WPS2SM:101 - Guessed default value: 0 -2016-05-02 13:01:16 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Time Index. The default is the first time indexed in the input environmental datasets -2016-05-02 13:01:16 DEBUG WPS2SM:291 - Conversion to SM Type->Name:TimeIndex -2016-05-02 13:01:16 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:16 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 13:01:16 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], TabularParameter [tableName= , templates=[], name=OccurrencesTable, description=A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN], Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN], ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:01:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:01:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 13:01:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 13:01:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 13:01:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:01:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 13:01:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 13:01:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 13:01:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 13:01:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:01:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:01:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 13:01:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 13:01:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 13:01:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 13:01:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 13:01:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:01:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 13:01:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:01:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 13:01:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 206 msc 0 sec -2016-05-02 13:01:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 13:01:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 13:01:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 13:01:23 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 13:01:23 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS -2016-05-02 13:01:23 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:01:23 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 13:01:24 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS - GENERIC_CHARTS - An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities. - - - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - TopElementsNumber - Max number of elements, with highest values, to visualize - Name of the parameter: TopElementsNumber. Max number of elements, with highest values, to visualize - - - - 10 - - - - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - - - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 13:01:24 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 13:01:24 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 13:01:24 DEBUG SClient4WPS:300 - WPSClient->Input: - TopElementsNumber - Max number of elements, with highest values, to visualize - Name of the parameter: TopElementsNumber. Max number of elements, with highest values, to visualize - - - - 10 - - -2016-05-02 13:01:24 DEBUG SClient4WPS:300 - WPSClient->Input: - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-02 13:01:24 DEBUG SClient4WPS:300 - WPSClient->Input: - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-02 13:01:24 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 13:01:24 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 13:01:24 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 13:01:24 DEBUG WPS2SM:279 - Conversion to SM Type->InputTable is a Complex Input -2016-05-02 13:01:24 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-05-02 13:01:24 DEBUG WPS2SM:200 - MimeType: text/xml -2016-05-02 13:01:24 DEBUG WPS2SM:201 - Schema: null -2016-05-02 13:01:24 DEBUG WPS2SM:202 - Encoding: null -2016-05-02 13:01:24 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 13:01:24 DEBUG WPS2SM:291 - Conversion to SM Type->Name:InputTable -2016-05-02 13:01:24 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:24 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=InputTable, description=The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 13:01:24 DEBUG WPS2SM:254 - Conversion to SM Type->TopElementsNumber is a Literal Input -2016-05-02 13:01:24 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:24 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:01:24 DEBUG WPS2SM:101 - Guessed default value: 10 -2016-05-02 13:01:24 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Max number of elements, with highest values, to visualize -2016-05-02 13:01:24 DEBUG WPS2SM:291 - Conversion to SM Type->Name:TopElementsNumber -2016-05-02 13:01:24 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:24 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 13:01:24 DEBUG WPS2SM:254 - Conversion to SM Type->Attributes is a Literal Input -2016-05-02 13:01:24 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:24 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:24 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:24 DEBUG WPS2SM:111 - Machter title: The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 13:01:24 DEBUG WPS2SM:112 - Machter find: true -2016-05-02 13:01:24 DEBUG WPS2SM:113 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-02 13:01:24 DEBUG WPS2SM:114 - Machter start: 42 -2016-05-02 13:01:24 DEBUG WPS2SM:115 - Machter end: 103 -2016-05-02 13:01:24 DEBUG WPS2SM:116 - Machter Group Count: 2 -2016-05-02 13:01:24 DEBUG WPS2SM:118 - Matcher referredTabularParameterName: InputTable -2016-05-02 13:01:24 DEBUG WPS2SM:121 - Matcher separator: | -2016-05-02 13:01:24 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] -2016-05-02 13:01:24 DEBUG WPS2SM:291 - Conversion to SM Type->Name:Attributes -2016-05-02 13:01:24 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:24 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 13:01:24 DEBUG WPS2SM:254 - Conversion to SM Type->Quantities is a Literal Input -2016-05-02 13:01:24 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:24 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:24 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:24 DEBUG WPS2SM:111 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 13:01:24 DEBUG WPS2SM:112 - Machter find: true -2016-05-02 13:01:24 DEBUG WPS2SM:113 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-02 13:01:24 DEBUG WPS2SM:114 - Machter start: 38 -2016-05-02 13:01:24 DEBUG WPS2SM:115 - Machter end: 99 -2016-05-02 13:01:24 DEBUG WPS2SM:116 - Machter Group Count: 2 -2016-05-02 13:01:24 DEBUG WPS2SM:118 - Matcher referredTabularParameterName: InputTable -2016-05-02 13:01:24 DEBUG WPS2SM:121 - Matcher separator: | -2016-05-02 13:01:24 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-02 13:01:24 DEBUG WPS2SM:291 - Conversion to SM Type->Name:Quantities -2016-05-02 13:01:24 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:24 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 13:01:24 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=InputTable, description=The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 13:01:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 13:01:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 13:01:24 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 13:01:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:24 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 13:01:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 13:01:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 13:01:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:01:24 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:01:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:01:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:01:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:01:24 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 13:01:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:24 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 13:01:24 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 13:01:24 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 13:01:24 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 13:01:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:01:24 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 13:01:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:01:24 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 13:01:24 INFO WorkspaceExplorerServiceImpl:142 - end time - 215 msc 0 sec -2016-05-02 13:01:24 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 13:01:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 13:01:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 13:01:28 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS -2016-05-02 13:01:28 DEBUG WPS2SM:279 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-02 13:01:28 DEBUG WPS2SM:285 - Max Megabytes: 1 -2016-05-02 13:01:28 DEBUG WPS2SM:200 - MimeType: text/xml -2016-05-02 13:01:28 DEBUG WPS2SM:201 - Schema: null -2016-05-02 13:01:28 DEBUG WPS2SM:202 - Encoding: null -2016-05-02 13:01:28 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 13:01:28 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-02 13:01:28 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:28 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 13:01:28 DEBUG WPS2SM:254 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-02 13:01:28 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:28 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:28 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:28 DEBUG WPS2SM:111 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 13:01:28 DEBUG WPS2SM:112 - Machter find: true -2016-05-02 13:01:28 DEBUG WPS2SM:113 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-02 13:01:28 DEBUG WPS2SM:114 - Machter start: 31 -2016-05-02 13:01:28 DEBUG WPS2SM:115 - Machter end: 103 -2016-05-02 13:01:28 DEBUG WPS2SM:116 - Machter Group Count: 2 -2016-05-02 13:01:28 DEBUG WPS2SM:118 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-02 13:01:28 DEBUG WPS2SM:121 - Matcher separator: | -2016-05-02 13:01:28 DEBUG WPS2SM:290 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-02 13:01:28 DEBUG WPS2SM:291 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-02 13:01:28 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:28 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 13:01:28 DEBUG WPS2SM:254 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-02 13:01:28 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:28 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:28 DEBUG WPS2SM:101 - Guessed default value: OccCluster_ -2016-05-02 13:01:28 DEBUG WPS2SM:290 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-02 13:01:28 DEBUG WPS2SM:291 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-02 13:01:28 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:28 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-02 13:01:28 DEBUG WPS2SM:254 - Conversion to SM Type->k is a Literal Input -2016-05-02 13:01:28 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:28 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:01:28 DEBUG WPS2SM:101 - Guessed default value: 3 -2016-05-02 13:01:28 DEBUG WPS2SM:290 - Conversion to SM Type->Title:expected Number of Clusters -2016-05-02 13:01:28 DEBUG WPS2SM:291 - Conversion to SM Type->Name:k -2016-05-02 13:01:28 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:28 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT] -2016-05-02 13:01:28 DEBUG WPS2SM:254 - Conversion to SM Type->max_runs is a Literal Input -2016-05-02 13:01:28 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:28 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:01:28 DEBUG WPS2SM:101 - Guessed default value: 10 -2016-05-02 13:01:28 DEBUG WPS2SM:290 - Conversion to SM Type->Title:max runs of the clustering procedure -2016-05-02 13:01:28 DEBUG WPS2SM:291 - Conversion to SM Type->Name:max_runs -2016-05-02 13:01:28 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:28 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 13:01:28 DEBUG WPS2SM:254 - Conversion to SM Type->max_optimization_steps is a Literal Input -2016-05-02 13:01:28 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:28 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:01:28 DEBUG WPS2SM:101 - Guessed default value: 5 -2016-05-02 13:01:28 DEBUG WPS2SM:290 - Conversion to SM Type->Title:max number of internal optimization steps -2016-05-02 13:01:28 DEBUG WPS2SM:291 - Conversion to SM Type->Name:max_optimization_steps -2016-05-02 13:01:28 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:28 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 13:01:28 DEBUG WPS2SM:254 - Conversion to SM Type->min_points is a Literal Input -2016-05-02 13:01:28 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:28 DEBUG WPS2SM:95 - Guessed type: java.lang.Integer -2016-05-02 13:01:28 DEBUG WPS2SM:101 - Guessed default value: 2 -2016-05-02 13:01:28 DEBUG WPS2SM:290 - Conversion to SM Type->Title:number of points which define an outlier set -2016-05-02 13:01:28 DEBUG WPS2SM:291 - Conversion to SM Type->Name:min_points -2016-05-02 13:01:28 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:28 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-02 13:01:28 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT]] -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 13:01:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 13:01:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:01:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 13:01:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 13:01:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 13:01:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 13:01:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:01:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:01:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:01:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 13:01:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:01:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 13:01:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 13:01:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 13:01:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 13:01:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 13:01:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 13:01:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 13:01:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 13:01:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 13:01:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 13:01:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 13:01:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 13:01:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 13:01:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 13:01:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:01:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 13:01:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 13:01:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 13:01:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 221 msc 0 sec -2016-05-02 13:01:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 13:01:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 13:01:32 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 13:01:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 13:01:32 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY -2016-05-02 13:01:32 DEBUG WPS2SM:254 - Conversion to SM Type->IDsFile is a Literal Input -2016-05-02 13:01:32 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:32 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:32 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:32 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK -2016-05-02 13:01:32 DEBUG WPS2SM:291 - Conversion to SM Type->Name:IDsFile -2016-05-02 13:01:32 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:32 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 13:01:32 DEBUG WPS2SM:254 - Conversion to SM Type->StocksFile is a Literal Input -2016-05-02 13:01:32 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:32 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:32 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:32 DEBUG WPS2SM:290 - Conversion to SM Type->Title:Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY -2016-05-02 13:01:32 DEBUG WPS2SM:291 - Conversion to SM Type->Name:StocksFile -2016-05-02 13:01:32 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:32 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 13:01:32 DEBUG WPS2SM:254 - Conversion to SM Type->SelectedStock is a Literal Input -2016-05-02 13:01:32 DEBUG WPS2SM:93 - WPS type: -2016-05-02 13:01:32 DEBUG WPS2SM:95 - Guessed type: java.lang.String -2016-05-02 13:01:32 DEBUG WPS2SM:101 - Guessed default value: -2016-05-02 13:01:32 DEBUG WPS2SM:290 - Conversion to SM Type->Title:The stock on which the procedure has to focus e.g. HLH_M07 -2016-05-02 13:01:32 DEBUG WPS2SM:291 - Conversion to SM Type->Name:SelectedStock -2016-05-02 13:01:32 DEBUG WPS2SM:292 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 13:01:32 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 13:01:32 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT]] -2016-05-02 13:01:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 13:01:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 13:02:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 13:02:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 13:03:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 13:03:24 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 13:04:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 13:04:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 13:04:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 13:04:19 WARN SessionCheckerServiceImpl:80 - Scope is null at Mon May 02 13:04:19 CEST 2016 -2016-05-02 13:04:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 14:42:30 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 14:42:30 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 14:42:30 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 14:42:30 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 14:42:30 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 14:42:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:42:30 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 14:42:30 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@b8208d4 -2016-05-02 14:42:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:42:30 INFO ASLSession:352 - Logging the entrance -2016-05-02 14:42:30 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 14:42:30 DEBUG TemplateModel:83 - 2016-05-02 14:42:30, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 14:42:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:42:30 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 14:42:32 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 14:42:32 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 14:42:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:42:32 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 14:42:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:42:32 INFO ASLSession:352 - Logging the entrance -2016-05-02 14:42:32 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 14:42:32 DEBUG TemplateModel:83 - 2016-05-02 14:42:32, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 14:42:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:42:32 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 14:42:32 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 116 ms -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 14:42:32 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 14:42:32 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 14:42:33 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:42:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 14:42:33 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@61865cca -2016-05-02 14:42:33 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@2acd83ad -2016-05-02 14:42:33 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5123c932 -2016-05-02 14:42:33 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@1d55dc19 -2016-05-02 14:42:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 112 ms -2016-05-02 14:42:33 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 14:42:33 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 14:42:33 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 14:42:33 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 14:42:33 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 14:42:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:42:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:42:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 14:42:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 40 ms -2016-05-02 14:42:33 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 14:42:33 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:42:33 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 14:42:33 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:42:33 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 14:42:33 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 14:42:33 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 14:42:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:42:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:42:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:42:33 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 14:42:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:33 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 14:42:34 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 14:42:34 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 14:42:34 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 14:42:34 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 14:42:34 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 14:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 14:42:34 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:42:34 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 14:42:34 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 14:42:34 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 14:42:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:42:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:34 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 14:42:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:34 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 14:42:34 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 14:42:34 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 14:42:34 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 14:42:34 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 14:42:34 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 14:42:34 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 14:42:34 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 14:42:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:34 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:42:34 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 14:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:34 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 14:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 14:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:34 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 14:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 14:42:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:35 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 14:42:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 14:42:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:35 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 14:42:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 14:42:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:35 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 14:42:35 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 14:42:35 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 14:42:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:42:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:42:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:42:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:35 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 14:42:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:42:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:42:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:42:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:35 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 14:42:35 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 14:42:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:36 INFO WorkspaceExplorerServiceImpl:188 - end time - 124 msc 0 sec -2016-05-02 14:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:42:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:42:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:36 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 14:42:36 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 14:42:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:36 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:42:36 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:42:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 14:42:36 INFO WorkspaceExplorerServiceImpl:188 - end time - 173 msc 0 sec -2016-05-02 14:42:36 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 29 ms -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 14:42:36 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:42:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 14:42:36 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 14:42:36 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 14:42:36 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 14:42:36 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 14:42:36 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 14:42:36 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 14:42:36 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:42:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 14:42:36 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 14:42:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:42:36 INFO WorkspaceExplorerServiceImpl:188 - end time - 422 msc 0 sec -2016-05-02 14:42:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:42:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:42:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:42:52 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-02 14:42:52 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:42:52 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:42:52 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:42:52 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:42:52 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:42:52 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-02 14:42:52 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-02 14:42:52 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-02 14:42:52 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-02 14:42:52 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:42:52 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:42:52 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:42:52 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:42:52 DEBUG WPS2SM:316 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-02 14:42:52 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:42:52 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:42:52 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:42:52 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:42:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:42:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-02 14:42:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:42:52 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:42:52 DEBUG WPS2SM:291 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-02 14:42:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:42:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:42:52 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:42:52 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:42:52 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 14:42:52 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-02 14:42:52 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-02 14:42:52 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-02 14:42:52 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 14:42:52 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-02 14:42:52 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 14:42:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-02 14:42:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-02 14:42:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:42:52 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 14:42:52 DEBUG WPS2SM:291 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-02 14:42:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:42:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:42:52 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-02 14:42:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-02 14:42:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-02 14:42:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:42:52 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-02 14:42:52 DEBUG WPS2SM:291 - Conversion to SM Type->epsilon is a Literal Input -2016-05-02 14:42:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:42:52 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:42:52 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:42:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-02 14:42:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:epsilon -2016-05-02 14:42:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:42:52 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:42:52 DEBUG WPS2SM:291 - Conversion to SM Type->min_points is a Literal Input -2016-05-02 14:42:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:42:52 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:42:52 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-02 14:42:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-02 14:42:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:min_points -2016-05-02 14:42:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:42:52 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 14:42:52 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:42:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:42:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:42:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:42:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:53 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:42:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:42:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:42:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:42:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:42:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:42:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:42:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:42:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:42:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:42:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:42:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:42:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:42:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:42:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:42:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:42:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:42:53 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:42:53 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:42:53 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:42:53 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:42:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:42:53 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:42:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:42:53 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:42:53 INFO WorkspaceExplorerServiceImpl:142 - end time - 221 msc 0 sec -2016-05-02 14:42:53 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:43:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:43:25 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:43:45 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:43:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:43:45 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS -2016-05-02 14:43:45 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:43:45 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:43:45 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS - KMEANS - A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - k - expected Number of Clusters - Name of the parameter: k. expected Number of Clusters - - - - 3 - - - - max_runs - max runs of the clustering procedure - Name of the parameter: max_runs. max runs of the clustering procedure - - - - 10 - - - - max_optimization_steps - max number of internal optimization steps - Name of the parameter: max_optimization_steps. max number of internal optimization steps - - - - 5 - - - - min_points - number of points which define an outlier set - Name of the parameter: min_points. number of points which define an outlier set - - - - 2 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:43:45 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:43:45 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:43:45 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-02 14:43:45 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-02 14:43:45 DEBUG SClient4WPS:300 - WPSClient->Input: - k - expected Number of Clusters - Name of the parameter: k. expected Number of Clusters - - - - 3 - - -2016-05-02 14:43:45 DEBUG SClient4WPS:300 - WPSClient->Input: - max_runs - max runs of the clustering procedure - Name of the parameter: max_runs. max runs of the clustering procedure - - - - 10 - - -2016-05-02 14:43:45 DEBUG SClient4WPS:300 - WPSClient->Input: - max_optimization_steps - max number of internal optimization steps - Name of the parameter: max_optimization_steps. max number of internal optimization steps - - - - 5 - - -2016-05-02 14:43:45 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - number of points which define an outlier set - Name of the parameter: min_points. number of points which define an outlier set - - - - 2 - - -2016-05-02 14:43:45 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:43:45 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:43:45 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:43:45 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:43:45 DEBUG WPS2SM:316 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-02 14:43:45 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:43:45 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:43:45 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:43:45 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:43:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:43:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-02 14:43:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:43:45 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:43:45 DEBUG WPS2SM:291 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-02 14:43:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:43:45 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:43:45 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:43:45 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:43:45 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 14:43:45 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-02 14:43:45 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-02 14:43:45 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-02 14:43:45 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 14:43:45 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-02 14:43:45 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 14:43:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-02 14:43:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-02 14:43:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:43:45 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 14:43:45 DEBUG WPS2SM:291 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-02 14:43:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:43:45 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:43:45 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-02 14:43:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-02 14:43:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-02 14:43:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:43:45 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-02 14:43:45 DEBUG WPS2SM:291 - Conversion to SM Type->k is a Literal Input -2016-05-02 14:43:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:43:45 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:43:45 DEBUG WPS2SM:100 - Guessed default value: 3 -2016-05-02 14:43:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:expected Number of Clusters -2016-05-02 14:43:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:k -2016-05-02 14:43:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:43:45 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT] -2016-05-02 14:43:45 DEBUG WPS2SM:291 - Conversion to SM Type->max_runs is a Literal Input -2016-05-02 14:43:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:43:45 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:43:45 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:43:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:max runs of the clustering procedure -2016-05-02 14:43:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:max_runs -2016-05-02 14:43:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:43:45 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:43:45 DEBUG WPS2SM:291 - Conversion to SM Type->max_optimization_steps is a Literal Input -2016-05-02 14:43:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:43:45 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:43:45 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 14:43:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:max number of internal optimization steps -2016-05-02 14:43:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:max_optimization_steps -2016-05-02 14:43:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:43:45 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 14:43:45 DEBUG WPS2SM:291 - Conversion to SM Type->min_points is a Literal Input -2016-05-02 14:43:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:43:45 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:43:45 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-02 14:43:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:number of points which define an outlier set -2016-05-02 14:43:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:min_points -2016-05-02 14:43:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:43:45 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-02 14:43:45 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT]] -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:43:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:43:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:43:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:43:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:43:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:43:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:43:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:43:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:43:45 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:43:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:43:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:43:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:43:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:43:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:43:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:43:45 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:43:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:43:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:43:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:43:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:43:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:43:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:43:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:43:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:43:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:43:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:43:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:43:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:43:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:43:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:43:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:43:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:43:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:43:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:43:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:43:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:43:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:43:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:43:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:43:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:43:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:43:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:43:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:43:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:43:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:43:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:43:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:43:46 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:43:46 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:43:46 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:43:46 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:43:46 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:43:46 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:43:46 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:43:46 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:43:46 INFO WorkspaceExplorerServiceImpl:142 - end time - 1271 msc 1 sec -2016-05-02 14:43:46 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:44:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:44:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:44:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:44:03 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY -2016-05-02 14:44:03 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:44:03 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:44:03 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY - CMSY - An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner. - - - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - - - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - - - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:44:03 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:44:03 DEBUG SClient4WPS:300 - WPSClient->Input: - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - -2016-05-02 14:44:03 DEBUG SClient4WPS:300 - WPSClient->Input: - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - -2016-05-02 14:44:03 DEBUG SClient4WPS:300 - WPSClient->Input: - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - -2016-05-02 14:44:03 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:44:03 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:44:03 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:44:03 DEBUG WPS2SM:291 - Conversion to SM Type->IDsFile is a Literal Input -2016-05-02 14:44:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:44:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:44:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:44:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK -2016-05-02 14:44:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:IDsFile -2016-05-02 14:44:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:44:03 DEBUG WPS2SM:291 - Conversion to SM Type->StocksFile is a Literal Input -2016-05-02 14:44:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:44:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:44:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:44:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY -2016-05-02 14:44:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:StocksFile -2016-05-02 14:44:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:44:03 DEBUG WPS2SM:291 - Conversion to SM Type->SelectedStock is a Literal Input -2016-05-02 14:44:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:44:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:44:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:44:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The stock on which the procedure has to focus e.g. HLH_M07 -2016-05-02 14:44:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:SelectedStock -2016-05-02 14:44:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:44:03 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT]] -2016-05-02 14:44:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:44:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:44:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:44:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:44:52 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS -2016-05-02 14:44:52 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:44:52 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:44:52 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS - GENERIC_CHARTS - An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities. - - - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - TopElementsNumber - Max number of elements, with highest values, to visualize - Name of the parameter: TopElementsNumber. Max number of elements, with highest values, to visualize - - - - 10 - - - - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - - - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:44:52 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:44:52 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:44:52 DEBUG SClient4WPS:300 - WPSClient->Input: - TopElementsNumber - Max number of elements, with highest values, to visualize - Name of the parameter: TopElementsNumber. Max number of elements, with highest values, to visualize - - - - 10 - - -2016-05-02 14:44:52 DEBUG SClient4WPS:300 - WPSClient->Input: - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-02 14:44:52 DEBUG SClient4WPS:300 - WPSClient->Input: - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-02 14:44:52 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:44:52 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:44:52 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:44:52 DEBUG WPS2SM:316 - Conversion to SM Type->InputTable is a Complex Input -2016-05-02 14:44:52 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:44:52 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:44:52 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:44:52 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:44:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:44:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:InputTable -2016-05-02 14:44:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:52 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=InputTable, description=The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:44:52 DEBUG WPS2SM:291 - Conversion to SM Type->TopElementsNumber is a Literal Input -2016-05-02 14:44:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:44:52 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:44:52 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:44:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Max number of elements, with highest values, to visualize -2016-05-02 14:44:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:TopElementsNumber -2016-05-02 14:44:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:52 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:44:52 DEBUG WPS2SM:291 - Conversion to SM Type->Attributes is a Literal Input -2016-05-02 14:44:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:44:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:44:52 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:44:52 DEBUG WPS2SM:110 - Machter title: The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:44:52 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 14:44:52 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-02 14:44:52 DEBUG WPS2SM:113 - Machter start: 42 -2016-05-02 14:44:52 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-02 14:44:52 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 14:44:52 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:44:52 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 14:44:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] -2016-05-02 14:44:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Attributes -2016-05-02 14:44:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:52 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 14:44:52 DEBUG WPS2SM:291 - Conversion to SM Type->Quantities is a Literal Input -2016-05-02 14:44:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:44:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:44:52 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:44:52 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:44:52 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 14:44:52 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-02 14:44:52 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-02 14:44:52 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-02 14:44:52 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 14:44:52 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:44:52 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 14:44:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-02 14:44:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Quantities -2016-05-02 14:44:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:52 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 14:44:52 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=InputTable, description=The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:44:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:44:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:44:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:44:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:44:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:44:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:44:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:44:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:44:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:44:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:44:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:44:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:44:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:44:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:44:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:44:52 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:44:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:44:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:44:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:44:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:44:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:44:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:44:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:44:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:44:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:44:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:44:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:44:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:44:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:44:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:44:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:44:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:44:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:44:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:44:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:44:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:44:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:52 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:44:52 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:44:52 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:44:52 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:44:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:44:52 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:44:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:44:52 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:44:52 INFO WorkspaceExplorerServiceImpl:142 - end time - 222 msc 0 sec -2016-05-02 14:44:52 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:44:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:44:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:44:56 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART -2016-05-02 14:44:56 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:44:56 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:44:56 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART - GEO_CHART - An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country. - - - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - Longitude - The column containing longitude decimal values [the name of a column from InputTable] - Name of the parameter: Longitude. The column containing longitude decimal values [the name of a column from InputTable] - - - - long - - - - Latitude - The column containing latitude decimal values [the name of a column from InputTable] - Name of the parameter: Latitude. The column containing latitude decimal values [the name of a column from InputTable] - - - - lat - - - - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:44:56 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:44:56 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:44:56 DEBUG SClient4WPS:300 - WPSClient->Input: - Longitude - The column containing longitude decimal values [the name of a column from InputTable] - Name of the parameter: Longitude. The column containing longitude decimal values [the name of a column from InputTable] - - - - long - - -2016-05-02 14:44:56 DEBUG SClient4WPS:300 - WPSClient->Input: - Latitude - The column containing latitude decimal values [the name of a column from InputTable] - Name of the parameter: Latitude. The column containing latitude decimal values [the name of a column from InputTable] - - - - lat - - -2016-05-02 14:44:56 DEBUG SClient4WPS:300 - WPSClient->Input: - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-02 14:44:56 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:44:56 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:44:56 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:44:56 DEBUG WPS2SM:316 - Conversion to SM Type->InputTable is a Complex Input -2016-05-02 14:44:56 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:44:56 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:44:56 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:44:56 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:44:56 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:44:56 DEBUG WPS2SM:328 - Conversion to SM Type->Name:InputTable -2016-05-02 14:44:56 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:56 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=InputTable, description=The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:44:56 DEBUG WPS2SM:291 - Conversion to SM Type->Longitude is a Literal Input -2016-05-02 14:44:56 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:44:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:44:56 DEBUG WPS2SM:100 - Guessed default value: long -2016-05-02 14:44:56 DEBUG WPS2SM:129 - Machter title: The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long] -2016-05-02 14:44:56 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:44:56 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-02 14:44:56 DEBUG WPS2SM:132 - Machter start: 48 -2016-05-02 14:44:56 DEBUG WPS2SM:133 - Machter end: 84 -2016-05-02 14:44:56 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:44:56 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:44:56 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing longitude decimal values [the name of a column from InputTable] -2016-05-02 14:44:56 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Longitude -2016-05-02 14:44:56 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:56 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN] -2016-05-02 14:44:56 DEBUG WPS2SM:291 - Conversion to SM Type->Latitude is a Literal Input -2016-05-02 14:44:56 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:44:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:44:56 DEBUG WPS2SM:100 - Guessed default value: lat -2016-05-02 14:44:56 DEBUG WPS2SM:129 - Machter title: The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat] -2016-05-02 14:44:56 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:44:56 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-02 14:44:56 DEBUG WPS2SM:132 - Machter start: 47 -2016-05-02 14:44:56 DEBUG WPS2SM:133 - Machter end: 83 -2016-05-02 14:44:56 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:44:56 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:44:56 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing latitude decimal values [the name of a column from InputTable] -2016-05-02 14:44:56 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Latitude -2016-05-02 14:44:56 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:56 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN] -2016-05-02 14:44:56 DEBUG WPS2SM:291 - Conversion to SM Type->Quantities is a Literal Input -2016-05-02 14:44:56 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:44:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:44:56 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:44:56 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:44:56 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 14:44:56 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-02 14:44:56 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-02 14:44:56 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-02 14:44:56 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 14:44:56 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:44:56 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 14:44:56 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-02 14:44:56 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Quantities -2016-05-02 14:44:56 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:44:56 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 14:44:56 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=InputTable, description=The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=Longitude, description=The column containing longitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:long], typology=COLUMN], Parameter [name=Latitude, description=The column containing latitude decimal values [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:lat], typology=COLUMN], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:44:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:44:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:44:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:44:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:44:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:44:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:44:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:44:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:44:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:44:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:44:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:44:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:44:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:44:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:44:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:44:56 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:44:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:44:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:44:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:44:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:44:56 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:44:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:44:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:44:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:44:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:44:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:44:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:44:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:44:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:44:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:44:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:44:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:44:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:44:56 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:44:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:44:56 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:44:56 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:44:56 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:44:56 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:44:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:44:56 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:44:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:44:56 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:44:56 INFO WorkspaceExplorerServiceImpl:142 - end time - 205 msc 0 sec -2016-05-02 14:44:56 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:45:03 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS -2016-05-02 14:45:03 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:03 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:45:03 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS - HRS - An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area. - - - ProjectingAreaTable - A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: ProjectingAreaTable. A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - OptionalCondition - optional filter for taking area rows - Name of the parameter: OptionalCondition. optional filter for taking area rows - - - - where oceanarea>0 - - - - PositiveCasesTable - A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: PositiveCasesTable. A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - NegativeCasesTable - A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: NegativeCasesTable. A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumns - Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] - Name of the parameter: FeaturesColumns. Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:45:03 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:45:03 DEBUG SClient4WPS:300 - WPSClient->Input: - ProjectingAreaTable - A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: ProjectingAreaTable. A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:45:03 DEBUG SClient4WPS:300 - WPSClient->Input: - OptionalCondition - optional filter for taking area rows - Name of the parameter: OptionalCondition. optional filter for taking area rows - - - - where oceanarea>0 - - -2016-05-02 14:45:03 DEBUG SClient4WPS:300 - WPSClient->Input: - PositiveCasesTable - A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: PositiveCasesTable. A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:45:03 DEBUG SClient4WPS:300 - WPSClient->Input: - NegativeCasesTable - A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: NegativeCasesTable. A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:45:03 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumns - Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] - Name of the parameter: FeaturesColumns. Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] - - - - - -2016-05-02 14:45:03 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:45:03 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:45:03 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:03 DEBUG WPS2SM:316 - Conversion to SM Type->ProjectingAreaTable is a Complex Input -2016-05-02 14:45:03 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:03 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:03 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:03 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 14:45:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:ProjectingAreaTable -2016-05-02 14:45:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:03 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=ProjectingAreaTable, description=A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:45:03 DEBUG WPS2SM:291 - Conversion to SM Type->OptionalCondition is a Literal Input -2016-05-02 14:45:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:03 DEBUG WPS2SM:100 - Guessed default value: where oceanarea>0 -2016-05-02 14:45:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:optional filter for taking area rows -2016-05-02 14:45:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OptionalCondition -2016-05-02 14:45:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=where oceanarea>0, value=null, name=OptionalCondition, description=optional filter for taking area rows [Min N. of Entries:1; Max N. of Entries:1; default:where oceanarea>0], typology=OBJECT] -2016-05-02 14:45:03 DEBUG WPS2SM:316 - Conversion to SM Type->PositiveCasesTable is a Complex Input -2016-05-02 14:45:03 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:03 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:03 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:03 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 14:45:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PositiveCasesTable -2016-05-02 14:45:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:03 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=PositiveCasesTable, description=A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:45:03 DEBUG WPS2SM:316 - Conversion to SM Type->NegativeCasesTable is a Complex Input -2016-05-02 14:45:03 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:03 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:03 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:03 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 14:45:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:NegativeCasesTable -2016-05-02 14:45:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:03 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=NegativeCasesTable, description=A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:45:03 DEBUG WPS2SM:291 - Conversion to SM Type->FeaturesColumns is a Literal Input -2016-05-02 14:45:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:45:03 DEBUG WPS2SM:110 - Machter title: Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:45:03 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 14:45:03 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from PositiveCasesTable separated by | -2016-05-02 14:45:03 DEBUG WPS2SM:113 - Machter start: 18 -2016-05-02 14:45:03 DEBUG WPS2SM:114 - Machter end: 87 -2016-05-02 14:45:03 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 14:45:03 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: PositiveCasesTable -2016-05-02 14:45:03 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 14:45:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] -2016-05-02 14:45:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FeaturesColumns -2016-05-02 14:45:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:03 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumns, description=Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 14:45:03 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=ProjectingAreaTable, description=A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], ObjectParameter [type=java.lang.String, defaultValue=where oceanarea>0, value=null, name=OptionalCondition, description=optional filter for taking area rows [Min N. of Entries:1; Max N. of Entries:1; default:where oceanarea>0], typology=OBJECT], TabularParameter [tableName= , templates=[], name=PositiveCasesTable, description=A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], TabularParameter [tableName= , templates=[], name=NegativeCasesTable, description=A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumns, description=Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:45:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 193 msc 0 sec -2016-05-02 14:45:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:45:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:45:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 223 msc 0 sec -2016-05-02 14:45:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:45:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-02 14:45:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:16 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:45:16 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS -2016-05-02 14:45:16 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:16 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:45:17 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS - QUALITY_ANALYSIS - An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model - - - PositiveCasesTable - A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: PositiveCasesTable. A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - NegativeCasesTable - A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: NegativeCasesTable. A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - PositiveCasesTableKeyColumn - Positive Cases Table Key Column [the name of a column from PositiveCasesTable] - Name of the parameter: PositiveCasesTableKeyColumn. Positive Cases Table Key Column [the name of a column from PositiveCasesTable] - - - - csquarecode - - - - NegativeCasesTableKeyColumn - Negative Cases Table Key Column [the name of a column from NegativeCasesTable] - Name of the parameter: NegativeCasesTableKeyColumn. Negative Cases Table Key Column [the name of a column from NegativeCasesTable] - - - - csquarecode - - - - DistributionTable - A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - Name of the parameter: DistributionTable. A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - DistributionTableKeyColumn - Distribution Table Key Column [the name of a column from DistributionTable] - Name of the parameter: DistributionTableKeyColumn. Distribution Table Key Column [the name of a column from DistributionTable] - - - - csquarecode - - - - DistributionTableProbabilityColumn - Distribution Table Probability Column [the name of a column from DistributionTable] - Name of the parameter: DistributionTableProbabilityColumn. Distribution Table Probability Column [the name of a column from DistributionTable] - - - - probability - - - - PositiveThreshold - Positive acceptance threshold - Name of the parameter: PositiveThreshold. Positive acceptance threshold - - - - 0.8 - - - - NegativeThreshold - Negative acceptance threshold - Name of the parameter: NegativeThreshold. Negative acceptance threshold - - - - 0.3 - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:45:17 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:45:17 DEBUG SClient4WPS:300 - WPSClient->Input: - PositiveCasesTable - A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: PositiveCasesTable. A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:45:17 DEBUG SClient4WPS:300 - WPSClient->Input: - NegativeCasesTable - A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: NegativeCasesTable. A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:45:17 DEBUG SClient4WPS:300 - WPSClient->Input: - PositiveCasesTableKeyColumn - Positive Cases Table Key Column [the name of a column from PositiveCasesTable] - Name of the parameter: PositiveCasesTableKeyColumn. Positive Cases Table Key Column [the name of a column from PositiveCasesTable] - - - - csquarecode - - -2016-05-02 14:45:17 DEBUG SClient4WPS:300 - WPSClient->Input: - NegativeCasesTableKeyColumn - Negative Cases Table Key Column [the name of a column from NegativeCasesTable] - Name of the parameter: NegativeCasesTableKeyColumn. Negative Cases Table Key Column [the name of a column from NegativeCasesTable] - - - - csquarecode - - -2016-05-02 14:45:17 DEBUG SClient4WPS:300 - WPSClient->Input: - DistributionTable - A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - Name of the parameter: DistributionTable. A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:45:17 DEBUG SClient4WPS:300 - WPSClient->Input: - DistributionTableKeyColumn - Distribution Table Key Column [the name of a column from DistributionTable] - Name of the parameter: DistributionTableKeyColumn. Distribution Table Key Column [the name of a column from DistributionTable] - - - - csquarecode - - -2016-05-02 14:45:17 DEBUG SClient4WPS:300 - WPSClient->Input: - DistributionTableProbabilityColumn - Distribution Table Probability Column [the name of a column from DistributionTable] - Name of the parameter: DistributionTableProbabilityColumn. Distribution Table Probability Column [the name of a column from DistributionTable] - - - - probability - - -2016-05-02 14:45:17 DEBUG SClient4WPS:300 - WPSClient->Input: - PositiveThreshold - Positive acceptance threshold - Name of the parameter: PositiveThreshold. Positive acceptance threshold - - - - 0.8 - - -2016-05-02 14:45:17 DEBUG SClient4WPS:300 - WPSClient->Input: - NegativeThreshold - Negative acceptance threshold - Name of the parameter: NegativeThreshold. Negative acceptance threshold - - - - 0.3 - - -2016-05-02 14:45:17 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:45:17 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:45:17 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:17 DEBUG WPS2SM:316 - Conversion to SM Type->PositiveCasesTable is a Complex Input -2016-05-02 14:45:17 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:17 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:17 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:17 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:17 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 14:45:17 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PositiveCasesTable -2016-05-02 14:45:17 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:17 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=PositiveCasesTable, description=A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:45:17 DEBUG WPS2SM:316 - Conversion to SM Type->NegativeCasesTable is a Complex Input -2016-05-02 14:45:17 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:17 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:17 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:17 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:17 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 14:45:17 DEBUG WPS2SM:328 - Conversion to SM Type->Name:NegativeCasesTable -2016-05-02 14:45:17 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:17 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=NegativeCasesTable, description=A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:45:17 DEBUG WPS2SM:291 - Conversion to SM Type->PositiveCasesTableKeyColumn is a Literal Input -2016-05-02 14:45:17 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:17 DEBUG WPS2SM:100 - Guessed default value: csquarecode -2016-05-02 14:45:17 DEBUG WPS2SM:129 - Machter title: Positive Cases Table Key Column [the name of a column from PositiveCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode] -2016-05-02 14:45:17 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:45:17 DEBUG WPS2SM:131 - Machter group: the name of a column from PositiveCasesTable -2016-05-02 14:45:17 DEBUG WPS2SM:132 - Machter start: 33 -2016-05-02 14:45:17 DEBUG WPS2SM:133 - Machter end: 77 -2016-05-02 14:45:17 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:45:17 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: PositiveCasesTable -2016-05-02 14:45:17 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Positive Cases Table Key Column [the name of a column from PositiveCasesTable] -2016-05-02 14:45:17 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PositiveCasesTableKeyColumn -2016-05-02 14:45:17 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=PositiveCasesTableKeyColumn, description=Positive Cases Table Key Column [the name of a column from PositiveCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN] -2016-05-02 14:45:17 DEBUG WPS2SM:291 - Conversion to SM Type->NegativeCasesTableKeyColumn is a Literal Input -2016-05-02 14:45:17 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:17 DEBUG WPS2SM:100 - Guessed default value: csquarecode -2016-05-02 14:45:17 DEBUG WPS2SM:129 - Machter title: Negative Cases Table Key Column [the name of a column from NegativeCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode] -2016-05-02 14:45:17 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:45:17 DEBUG WPS2SM:131 - Machter group: the name of a column from NegativeCasesTable -2016-05-02 14:45:17 DEBUG WPS2SM:132 - Machter start: 33 -2016-05-02 14:45:17 DEBUG WPS2SM:133 - Machter end: 77 -2016-05-02 14:45:17 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:45:17 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: NegativeCasesTable -2016-05-02 14:45:17 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Negative Cases Table Key Column [the name of a column from NegativeCasesTable] -2016-05-02 14:45:17 DEBUG WPS2SM:328 - Conversion to SM Type->Name:NegativeCasesTableKeyColumn -2016-05-02 14:45:17 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=NegativeCasesTableKeyColumn, description=Negative Cases Table Key Column [the name of a column from NegativeCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN] -2016-05-02 14:45:17 DEBUG WPS2SM:316 - Conversion to SM Type->DistributionTable is a Complex Input -2016-05-02 14:45:17 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:17 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:17 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:17 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:17 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] -2016-05-02 14:45:17 DEBUG WPS2SM:328 - Conversion to SM Type->Name:DistributionTable -2016-05-02 14:45:17 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:17 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=DistributionTable, description=A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:45:17 DEBUG WPS2SM:291 - Conversion to SM Type->DistributionTableKeyColumn is a Literal Input -2016-05-02 14:45:17 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:17 DEBUG WPS2SM:100 - Guessed default value: csquarecode -2016-05-02 14:45:17 DEBUG WPS2SM:129 - Machter title: Distribution Table Key Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode] -2016-05-02 14:45:17 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:45:17 DEBUG WPS2SM:131 - Machter group: the name of a column from DistributionTable -2016-05-02 14:45:17 DEBUG WPS2SM:132 - Machter start: 31 -2016-05-02 14:45:17 DEBUG WPS2SM:133 - Machter end: 74 -2016-05-02 14:45:17 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:45:17 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: DistributionTable -2016-05-02 14:45:17 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Distribution Table Key Column [the name of a column from DistributionTable] -2016-05-02 14:45:17 DEBUG WPS2SM:328 - Conversion to SM Type->Name:DistributionTableKeyColumn -2016-05-02 14:45:17 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=DistributionTableKeyColumn, description=Distribution Table Key Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN] -2016-05-02 14:45:17 DEBUG WPS2SM:291 - Conversion to SM Type->DistributionTableProbabilityColumn is a Literal Input -2016-05-02 14:45:17 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:17 DEBUG WPS2SM:100 - Guessed default value: probability -2016-05-02 14:45:17 DEBUG WPS2SM:129 - Machter title: Distribution Table Probability Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability] -2016-05-02 14:45:17 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:45:17 DEBUG WPS2SM:131 - Machter group: the name of a column from DistributionTable -2016-05-02 14:45:17 DEBUG WPS2SM:132 - Machter start: 39 -2016-05-02 14:45:17 DEBUG WPS2SM:133 - Machter end: 82 -2016-05-02 14:45:17 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:45:17 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: DistributionTable -2016-05-02 14:45:17 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Distribution Table Probability Column [the name of a column from DistributionTable] -2016-05-02 14:45:17 DEBUG WPS2SM:328 - Conversion to SM Type->Name:DistributionTableProbabilityColumn -2016-05-02 14:45:17 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:17 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=DistributionTableProbabilityColumn, description=Distribution Table Probability Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability], typology=COLUMN] -2016-05-02 14:45:17 DEBUG WPS2SM:291 - Conversion to SM Type->PositiveThreshold is a Literal Input -2016-05-02 14:45:17 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:17 DEBUG WPS2SM:100 - Guessed default value: 0.8 -2016-05-02 14:45:17 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Positive acceptance threshold -2016-05-02 14:45:17 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PositiveThreshold -2016-05-02 14:45:17 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=0.8, value=null, name=PositiveThreshold, description=Positive acceptance threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.8], typology=OBJECT] -2016-05-02 14:45:17 DEBUG WPS2SM:291 - Conversion to SM Type->NegativeThreshold is a Literal Input -2016-05-02 14:45:17 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:17 DEBUG WPS2SM:100 - Guessed default value: 0.3 -2016-05-02 14:45:17 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Negative acceptance threshold -2016-05-02 14:45:17 DEBUG WPS2SM:328 - Conversion to SM Type->Name:NegativeThreshold -2016-05-02 14:45:17 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:17 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=0.3, value=null, name=NegativeThreshold, description=Negative acceptance threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.3], typology=OBJECT] -2016-05-02 14:45:17 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=PositiveCasesTable, description=A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], TabularParameter [tableName= , templates=[], name=NegativeCasesTable, description=A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=PositiveCasesTableKeyColumn, description=Positive Cases Table Key Column [the name of a column from PositiveCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN], Parameter [name=NegativeCasesTableKeyColumn, description=Negative Cases Table Key Column [the name of a column from NegativeCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN], TabularParameter [tableName= , templates=[], name=DistributionTable, description=A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=DistributionTableKeyColumn, description=Distribution Table Key Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN], Parameter [name=DistributionTableProbabilityColumn, description=Distribution Table Probability Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=0.8, value=null, name=PositiveThreshold, description=Positive acceptance threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.8], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=0.3, value=null, name=NegativeThreshold, description=Negative acceptance threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.3], typology=OBJECT]] -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:45:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 196 msc 0 sec -2016-05-02 14:45:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:45:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:45:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 199 msc 0 sec -2016-05-02 14:45:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:45:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 172 msc 0 sec -2016-05-02 14:45:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:45:21 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS -2016-05-02 14:45:21 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:21 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:45:21 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS - DISCREPANCY_ANALYSIS - An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic. - - - FirstTable - First Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - Name of the parameter: FirstTable. First Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - SecondTable - Second Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - Name of the parameter: SecondTable. Second Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FirstTableCsquareColumn - the csquares column name in the first table [the name of a column from FirstTable] - Name of the parameter: FirstTableCsquareColumn. the csquares column name in the first table [the name of a column from FirstTable] - - - - csquarecode - - - - SecondTableCsquareColumn - the csquares column name in the second table [the name of a column from SecondTable] - Name of the parameter: SecondTableCsquareColumn. the csquares column name in the second table [the name of a column from SecondTable] - - - - csquarecode - - - - FirstTableProbabilityColumn - the probability column in the first table [the name of a column from FirstTable] - Name of the parameter: FirstTableProbabilityColumn. the probability column in the first table [the name of a column from FirstTable] - - - - probability - - - - SecondTableProbabilityColumn - the probability column in the second table [the name of a column from SecondTable] - Name of the parameter: SecondTableProbabilityColumn. the probability column in the second table [the name of a column from SecondTable] - - - - probability - - - - ComparisonThreshold - the comparison threshold - Name of the parameter: ComparisonThreshold. the comparison threshold - - - - 0.1 - - - - MaxSamples - the comparison threshold - Name of the parameter: MaxSamples. the comparison threshold - - - - 10000 - - - - KThreshold - Threshold for K-Statistic: over this threshold values will be considered 1 for agreement calculation. Default is 0.5 - Name of the parameter: KThreshold. Threshold for K-Statistic: over this threshold values will be considered 1 for agreement calculation. Default is 0.5 - - - - 0.5 - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:45:21 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:45:21 DEBUG SClient4WPS:300 - WPSClient->Input: - FirstTable - First Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - Name of the parameter: FirstTable. First Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:45:21 DEBUG SClient4WPS:300 - WPSClient->Input: - SecondTable - Second Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - Name of the parameter: SecondTable. Second Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:45:21 DEBUG SClient4WPS:300 - WPSClient->Input: - FirstTableCsquareColumn - the csquares column name in the first table [the name of a column from FirstTable] - Name of the parameter: FirstTableCsquareColumn. the csquares column name in the first table [the name of a column from FirstTable] - - - - csquarecode - - -2016-05-02 14:45:21 DEBUG SClient4WPS:300 - WPSClient->Input: - SecondTableCsquareColumn - the csquares column name in the second table [the name of a column from SecondTable] - Name of the parameter: SecondTableCsquareColumn. the csquares column name in the second table [the name of a column from SecondTable] - - - - csquarecode - - -2016-05-02 14:45:21 DEBUG SClient4WPS:300 - WPSClient->Input: - FirstTableProbabilityColumn - the probability column in the first table [the name of a column from FirstTable] - Name of the parameter: FirstTableProbabilityColumn. the probability column in the first table [the name of a column from FirstTable] - - - - probability - - -2016-05-02 14:45:21 DEBUG SClient4WPS:300 - WPSClient->Input: - SecondTableProbabilityColumn - the probability column in the second table [the name of a column from SecondTable] - Name of the parameter: SecondTableProbabilityColumn. the probability column in the second table [the name of a column from SecondTable] - - - - probability - - -2016-05-02 14:45:21 DEBUG SClient4WPS:300 - WPSClient->Input: - ComparisonThreshold - the comparison threshold - Name of the parameter: ComparisonThreshold. the comparison threshold - - - - 0.1 - - -2016-05-02 14:45:21 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxSamples - the comparison threshold - Name of the parameter: MaxSamples. the comparison threshold - - - - 10000 - - -2016-05-02 14:45:21 DEBUG SClient4WPS:300 - WPSClient->Input: - KThreshold - Threshold for K-Statistic: over this threshold values will be considered 1 for agreement calculation. Default is 0.5 - Name of the parameter: KThreshold. Threshold for K-Statistic: over this threshold values will be considered 1 for agreement calculation. Default is 0.5 - - - - 0.5 - - -2016-05-02 14:45:21 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:45:21 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:45:21 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:21 DEBUG WPS2SM:316 - Conversion to SM Type->FirstTable is a Complex Input -2016-05-02 14:45:21 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:21 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:21 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:21 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:First Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] -2016-05-02 14:45:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FirstTable -2016-05-02 14:45:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:21 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=FirstTable, description=First Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:45:21 DEBUG WPS2SM:316 - Conversion to SM Type->SecondTable is a Complex Input -2016-05-02 14:45:21 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:21 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:21 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:21 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Second Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] -2016-05-02 14:45:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:SecondTable -2016-05-02 14:45:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:21 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=SecondTable, description=Second Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:45:21 DEBUG WPS2SM:291 - Conversion to SM Type->FirstTableCsquareColumn is a Literal Input -2016-05-02 14:45:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:21 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:21 DEBUG WPS2SM:100 - Guessed default value: csquarecode -2016-05-02 14:45:21 DEBUG WPS2SM:129 - Machter title: the csquares column name in the first table [the name of a column from FirstTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode] -2016-05-02 14:45:21 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:45:21 DEBUG WPS2SM:131 - Machter group: the name of a column from FirstTable -2016-05-02 14:45:21 DEBUG WPS2SM:132 - Machter start: 45 -2016-05-02 14:45:21 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-02 14:45:21 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:45:21 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: FirstTable -2016-05-02 14:45:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the csquares column name in the first table [the name of a column from FirstTable] -2016-05-02 14:45:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FirstTableCsquareColumn -2016-05-02 14:45:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:21 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FirstTableCsquareColumn, description=the csquares column name in the first table [the name of a column from FirstTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN] -2016-05-02 14:45:21 DEBUG WPS2SM:291 - Conversion to SM Type->SecondTableCsquareColumn is a Literal Input -2016-05-02 14:45:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:21 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:21 DEBUG WPS2SM:100 - Guessed default value: csquarecode -2016-05-02 14:45:21 DEBUG WPS2SM:129 - Machter title: the csquares column name in the second table [the name of a column from SecondTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode] -2016-05-02 14:45:21 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:45:21 DEBUG WPS2SM:131 - Machter group: the name of a column from SecondTable -2016-05-02 14:45:21 DEBUG WPS2SM:132 - Machter start: 46 -2016-05-02 14:45:21 DEBUG WPS2SM:133 - Machter end: 83 -2016-05-02 14:45:21 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:45:21 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: SecondTable -2016-05-02 14:45:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the csquares column name in the second table [the name of a column from SecondTable] -2016-05-02 14:45:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:SecondTableCsquareColumn -2016-05-02 14:45:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:21 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=SecondTableCsquareColumn, description=the csquares column name in the second table [the name of a column from SecondTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN] -2016-05-02 14:45:21 DEBUG WPS2SM:291 - Conversion to SM Type->FirstTableProbabilityColumn is a Literal Input -2016-05-02 14:45:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:21 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:21 DEBUG WPS2SM:100 - Guessed default value: probability -2016-05-02 14:45:21 DEBUG WPS2SM:129 - Machter title: the probability column in the first table [the name of a column from FirstTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability] -2016-05-02 14:45:21 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:45:21 DEBUG WPS2SM:131 - Machter group: the name of a column from FirstTable -2016-05-02 14:45:21 DEBUG WPS2SM:132 - Machter start: 43 -2016-05-02 14:45:21 DEBUG WPS2SM:133 - Machter end: 79 -2016-05-02 14:45:21 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:45:21 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: FirstTable -2016-05-02 14:45:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the probability column in the first table [the name of a column from FirstTable] -2016-05-02 14:45:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FirstTableProbabilityColumn -2016-05-02 14:45:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:21 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FirstTableProbabilityColumn, description=the probability column in the first table [the name of a column from FirstTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability], typology=COLUMN] -2016-05-02 14:45:21 DEBUG WPS2SM:291 - Conversion to SM Type->SecondTableProbabilityColumn is a Literal Input -2016-05-02 14:45:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:21 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:21 DEBUG WPS2SM:100 - Guessed default value: probability -2016-05-02 14:45:21 DEBUG WPS2SM:129 - Machter title: the probability column in the second table [the name of a column from SecondTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability] -2016-05-02 14:45:21 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:45:21 DEBUG WPS2SM:131 - Machter group: the name of a column from SecondTable -2016-05-02 14:45:21 DEBUG WPS2SM:132 - Machter start: 44 -2016-05-02 14:45:21 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-02 14:45:21 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:45:21 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: SecondTable -2016-05-02 14:45:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the probability column in the second table [the name of a column from SecondTable] -2016-05-02 14:45:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:SecondTableProbabilityColumn -2016-05-02 14:45:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:21 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=SecondTableProbabilityColumn, description=the probability column in the second table [the name of a column from SecondTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability], typology=COLUMN] -2016-05-02 14:45:21 DEBUG WPS2SM:291 - Conversion to SM Type->ComparisonThreshold is a Literal Input -2016-05-02 14:45:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:21 DEBUG WPS2SM:100 - Guessed default value: 0.1 -2016-05-02 14:45:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the comparison threshold -2016-05-02 14:45:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:ComparisonThreshold -2016-05-02 14:45:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.1, value=null, name=ComparisonThreshold, description=the comparison threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.1], typology=OBJECT] -2016-05-02 14:45:21 DEBUG WPS2SM:291 - Conversion to SM Type->MaxSamples is a Literal Input -2016-05-02 14:45:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:21 DEBUG WPS2SM:100 - Guessed default value: 10000 -2016-05-02 14:45:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the comparison threshold -2016-05-02 14:45:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxSamples -2016-05-02 14:45:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10000, value=null, name=MaxSamples, description=the comparison threshold [Min N. of Entries:1; Max N. of Entries:1; default:10000], typology=OBJECT] -2016-05-02 14:45:21 DEBUG WPS2SM:291 - Conversion to SM Type->KThreshold is a Literal Input -2016-05-02 14:45:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:21 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 14:45:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold for K-Statistic: over this threshold values will be considered 1 for agreement calculation. Default is 0.5 -2016-05-02 14:45:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:KThreshold -2016-05-02 14:45:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=KThreshold, description=Threshold for K-Statistic: over this threshold values will be considered 1 for agreement calculation. Default is 0.5 [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 14:45:21 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=FirstTable, description=First Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], TabularParameter [tableName= , templates=[], name=SecondTable, description=Second Table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FirstTableCsquareColumn, description=the csquares column name in the first table [the name of a column from FirstTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN], Parameter [name=SecondTableCsquareColumn, description=the csquares column name in the second table [the name of a column from SecondTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN], Parameter [name=FirstTableProbabilityColumn, description=the probability column in the first table [the name of a column from FirstTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability], typology=COLUMN], Parameter [name=SecondTableProbabilityColumn, description=the probability column in the second table [the name of a column from SecondTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability], typology=COLUMN], ObjectParameter [type=java.lang.Double, defaultValue=0.1, value=null, name=ComparisonThreshold, description=the comparison threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.1], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10000, value=null, name=MaxSamples, description=the comparison threshold [Min N. of Entries:1; Max N. of Entries:1; default:10000], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=KThreshold, description=Threshold for K-Statistic: over this threshold values will be considered 1 for agreement calculation. Default is 0.5 [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT]] -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:45:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:45:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 205 msc 0 sec -2016-05-02 14:45:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:45:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 199 msc 0 sec -2016-05-02 14:45:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:45:27 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA -2016-05-02 14:45:27 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:27 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:45:27 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA - ICCAT_VPA - An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr. - - - StartYear - First year of the dataset temporal extent - Name of the parameter: StartYear. First year of the dataset temporal extent - - - - 1950 - - - - EndYear - Last year of the dataset temporal extent - Name of the parameter: EndYear. Last year of the dataset temporal extent - - - - 2013 - - - - CAAFile - Catch at Age Matrix (Number of Fish caught by year and for each age) - Name of the parameter: CAAFile. Catch at Age Matrix (Number of Fish caught by year and for each age) - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - PCAAFile - Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) - Name of the parameter: PCAAFile. Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - CPUEFile - Table of Catch Per Unit of Effort used in the stock assessment - Name of the parameter: CPUEFile. Table of Catch Per Unit of Effort used in the stock assessment - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - PwaaFile - Partial weight at age (Weight of Fish caught by gear and year and for each age) - Name of the parameter: PwaaFile. Partial weight at age (Weight of Fish caught by gear and year and for each age) - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - waaFile - Fecundity at age (Fecundity of Fish caught by year and for each age) - Name of the parameter: waaFile. Fecundity at age (Fecundity of Fish caught by year and for each age) - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - shortComment - Free text for users to describe the current simulation - Name of the parameter: shortComment. Free text for users to describe the current simulation - - - - - - - - nCPUE - Number of Catch Per Unit of Effort Time series to use - Name of the parameter: nCPUE. Number of Catch Per Unit of Effort Time series to use - - - - 7 - - - - CPUE_cut - Identifier of the Catch Per Unit of Effort Time Serie to be shrunk - Name of the parameter: CPUE_cut. Identifier of the Catch Per Unit of Effort Time Serie to be shrunk - - - - 1 - - - - n_remove_year - Number of the (last) years to be removed - Name of the parameter: n_remove_year. Number of the (last) years to be removed - - - - 1 - - - - age_plus_group - Maximal age class of catches to be taken into account - Name of the parameter: age_plus_group. Maximal age class of catches to be taken into account - - - - 10 - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:45:27 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - StartYear - First year of the dataset temporal extent - Name of the parameter: StartYear. First year of the dataset temporal extent - - - - 1950 - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - EndYear - Last year of the dataset temporal extent - Name of the parameter: EndYear. Last year of the dataset temporal extent - - - - 2013 - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - CAAFile - Catch at Age Matrix (Number of Fish caught by year and for each age) - Name of the parameter: CAAFile. Catch at Age Matrix (Number of Fish caught by year and for each age) - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - PCAAFile - Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) - Name of the parameter: PCAAFile. Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - CPUEFile - Table of Catch Per Unit of Effort used in the stock assessment - Name of the parameter: CPUEFile. Table of Catch Per Unit of Effort used in the stock assessment - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - PwaaFile - Partial weight at age (Weight of Fish caught by gear and year and for each age) - Name of the parameter: PwaaFile. Partial weight at age (Weight of Fish caught by gear and year and for each age) - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - waaFile - Fecundity at age (Fecundity of Fish caught by year and for each age) - Name of the parameter: waaFile. Fecundity at age (Fecundity of Fish caught by year and for each age) - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - shortComment - Free text for users to describe the current simulation - Name of the parameter: shortComment. Free text for users to describe the current simulation - - - - - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - nCPUE - Number of Catch Per Unit of Effort Time series to use - Name of the parameter: nCPUE. Number of Catch Per Unit of Effort Time series to use - - - - 7 - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - CPUE_cut - Identifier of the Catch Per Unit of Effort Time Serie to be shrunk - Name of the parameter: CPUE_cut. Identifier of the Catch Per Unit of Effort Time Serie to be shrunk - - - - 1 - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - n_remove_year - Number of the (last) years to be removed - Name of the parameter: n_remove_year. Number of the (last) years to be removed - - - - 1 - - -2016-05-02 14:45:27 DEBUG SClient4WPS:300 - WPSClient->Input: - age_plus_group - Maximal age class of catches to be taken into account - Name of the parameter: age_plus_group. Maximal age class of catches to be taken into account - - - - 10 - - -2016-05-02 14:45:27 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:45:27 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:45:27 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:27 DEBUG WPS2SM:291 - Conversion to SM Type->StartYear is a Literal Input -2016-05-02 14:45:27 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:27 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:27 DEBUG WPS2SM:100 - Guessed default value: 1950 -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:First year of the dataset temporal extent -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:StartYear -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1950, value=null, name=StartYear, description=First year of the dataset temporal extent [Min N. of Entries:1; Max N. of Entries:1; default:1950], typology=OBJECT] -2016-05-02 14:45:27 DEBUG WPS2SM:291 - Conversion to SM Type->EndYear is a Literal Input -2016-05-02 14:45:27 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:27 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:27 DEBUG WPS2SM:100 - Guessed default value: 2013 -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Last year of the dataset temporal extent -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:EndYear -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=2013, value=null, name=EndYear, description=Last year of the dataset temporal extent [Min N. of Entries:1; Max N. of Entries:1; default:2013], typology=OBJECT] -2016-05-02 14:45:27 DEBUG WPS2SM:316 - Conversion to SM Type->CAAFile is a Complex Input -2016-05-02 14:45:27 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:27 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:27 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:27 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Catch at Age Matrix (Number of Fish caught by year and for each age) -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:CAAFile -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=CAAFile, description=Catch at Age Matrix (Number of Fish caught by year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:45:27 DEBUG WPS2SM:316 - Conversion to SM Type->PCAAFile is a Complex Input -2016-05-02 14:45:27 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:27 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:27 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:27 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PCAAFile -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=PCAAFile, description=Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:45:27 DEBUG WPS2SM:316 - Conversion to SM Type->CPUEFile is a Complex Input -2016-05-02 14:45:27 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:27 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:27 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:27 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Table of Catch Per Unit of Effort used in the stock assessment -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:CPUEFile -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=CPUEFile, description=Table of Catch Per Unit of Effort used in the stock assessment [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:45:27 DEBUG WPS2SM:316 - Conversion to SM Type->PwaaFile is a Complex Input -2016-05-02 14:45:27 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:27 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:27 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:27 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Partial weight at age (Weight of Fish caught by gear and year and for each age) -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PwaaFile -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=PwaaFile, description=Partial weight at age (Weight of Fish caught by gear and year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:45:27 DEBUG WPS2SM:316 - Conversion to SM Type->waaFile is a Complex Input -2016-05-02 14:45:27 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:27 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:27 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:27 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Fecundity at age (Fecundity of Fish caught by year and for each age) -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:waaFile -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=waaFile, description=Fecundity at age (Fecundity of Fish caught by year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:45:27 DEBUG WPS2SM:291 - Conversion to SM Type->shortComment is a Literal Input -2016-05-02 14:45:27 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:27 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:27 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Free text for users to describe the current simulation -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:shortComment -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=shortComment, description=Free text for users to describe the current simulation [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:45:27 DEBUG WPS2SM:291 - Conversion to SM Type->nCPUE is a Literal Input -2016-05-02 14:45:27 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:27 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:27 DEBUG WPS2SM:100 - Guessed default value: 7 -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Number of Catch Per Unit of Effort Time series to use -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:nCPUE -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=7, value=null, name=nCPUE, description=Number of Catch Per Unit of Effort Time series to use [Min N. of Entries:1; Max N. of Entries:1; default:7], typology=OBJECT] -2016-05-02 14:45:27 DEBUG WPS2SM:291 - Conversion to SM Type->CPUE_cut is a Literal Input -2016-05-02 14:45:27 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:27 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:27 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Identifier of the Catch Per Unit of Effort Time Serie to be shrunk -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:CPUE_cut -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=CPUE_cut, description=Identifier of the Catch Per Unit of Effort Time Serie to be shrunk [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 14:45:27 DEBUG WPS2SM:291 - Conversion to SM Type->n_remove_year is a Literal Input -2016-05-02 14:45:27 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:27 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:27 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Number of the (last) years to be removed -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:n_remove_year -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=n_remove_year, description=Number of the (last) years to be removed [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 14:45:27 DEBUG WPS2SM:291 - Conversion to SM Type->age_plus_group is a Literal Input -2016-05-02 14:45:27 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:27 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:27 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:45:27 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Maximal age class of catches to be taken into account -2016-05-02 14:45:27 DEBUG WPS2SM:328 - Conversion to SM Type->Name:age_plus_group -2016-05-02 14:45:27 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:27 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=age_plus_group, description=Maximal age class of catches to be taken into account [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:45:27 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.Integer, defaultValue=1950, value=null, name=StartYear, description=First year of the dataset temporal extent [Min N. of Entries:1; Max N. of Entries:1; default:1950], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=2013, value=null, name=EndYear, description=Last year of the dataset temporal extent [Min N. of Entries:1; Max N. of Entries:1; default:2013], typology=OBJECT], ListParameter [type=java.lang.String, value=null, separator=|, name=CAAFile, description=Catch at Age Matrix (Number of Fish caught by year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=PCAAFile, description=Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=CPUEFile, description=Table of Catch Per Unit of Effort used in the stock assessment [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=PwaaFile, description=Partial weight at age (Weight of Fish caught by gear and year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=waaFile, description=Fecundity at age (Fecundity of Fish caught by year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=shortComment, description=Free text for users to describe the current simulation [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=7, value=null, name=nCPUE, description=Number of Catch Per Unit of Effort Time series to use [Min N. of Entries:1; Max N. of Entries:1; default:7], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=CPUE_cut, description=Identifier of the Catch Per Unit of Effort Time Serie to be shrunk [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=n_remove_year, description=Number of the (last) years to be removed [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=age_plus_group, description=Maximal age class of catches to be taken into account [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT]] -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:45:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:45:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:45:40 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-02 14:45:40 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:40 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:45:40 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM - BIONYM - An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - - - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:45:40 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - RawTaxaNamesTable - Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: RawTaxaNamesTable. Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - RawNamesColumn - The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - Name of the parameter: RawNamesColumn. The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] - - - - rawnames - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - Name of the table which will contain the matches - Name of the parameter: OutputTableLabel. Name of the table which will contain the matches - - - - bionout - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-02 14:45:40 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:45:40 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:45:40 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:45:40 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:40 DEBUG WPS2SM:316 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-02 14:45:40 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:45:40 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:45:40 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:45:40 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=RawTaxaNamesTable, description=Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-02 14:45:40 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-02 14:45:40 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:45:40 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-02 14:45:40 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-02 14:45:40 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-02 14:45:40 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:45:40 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:RawNamesColumn -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableLabel -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The reference dataset to use -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Parser_Name -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_1 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_1 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_1 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_2 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_2 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_2 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_3 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_3 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_3 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_4 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_4 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_4 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-02 14:45:40 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_5 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_5 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-02 14:45:40 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-02 14:45:40 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:40 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:40 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:45:40 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:40 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_5 -2016-05-02 14:45:40 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:40 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:45:40 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=RawTaxaNamesTable, description=Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:45:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:40 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:45:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:45:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:45:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:45:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:45:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:45:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:45:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:45:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:45:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:45:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:45:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:45:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:45:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:45:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:45:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:45:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:45:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:45:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:45:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 159 msc 0 sec -2016-05-02 14:45:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:45:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:45:46 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:45:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:45:46 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL -2016-05-02 14:45:46 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:46 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:45:46 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL - BIONYM_LOCAL - A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication. - - - SpeciesAuthorName - The scientific name of the species, possibly with authorship - Name of the parameter: SpeciesAuthorName. The scientific name of the species, possibly with authorship - - - - Gadus morhua (Linnaeus, 1758) - - - - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - - - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - - - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - - - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - - - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - - - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - - - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - - - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - - - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - - - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - - - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - - - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - - - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - - - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - - - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - - - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - - - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - - - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:45:46 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - SpeciesAuthorName - The scientific name of the species, possibly with authorship - Name of the parameter: SpeciesAuthorName. The scientific name of the species, possibly with authorship - - - - Gadus morhua (Linnaeus, 1758) - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Taxa_Authority_File - The reference dataset to use - Name of the parameter: Taxa_Authority_File. The reference dataset to use - - - - ASFIS - FISHBASE - OBIS - OBIS_ANIMALIA - OBIS_CNIDARIA - OBIS_ECHINODERMATA - OBIS_PLATYHELMINTHES - COL_FULL - COL_CHORDATA - COL_MAMMALIA - IRMNG_ACTINOPTERYGII - WORMS_ANIMALIA - WORMS_PISCES - - FISHBASE - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Parser_Name - The Species - Authority parser - Name of the parameter: Parser_Name. The Species - Authority parser - - - - SIMPLE - GNI - NONE - - SIMPLE - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Activate_Preparsing_Processing - Use preparsing rules to correct common errors - Name of the parameter: Activate_Preparsing_Processing. Use preparsing rules to correct common errors - - - - true - false - - true - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Use_Stemmed_Genus_and_Species - Process using Genus and Species names without declension - Name of the parameter: Use_Stemmed_Genus_and_Species. Process using Genus and Species names without declension - - - - true - false - - false - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Accuracy_vs_Speed - A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - Name of the parameter: Accuracy_vs_Speed. A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. - - - - MAX_ACCURACY - LOW_SPEED - MEDIUM_SPEED - HIGH_SPEED - MAX_SPEED - - MAX_ACCURACY - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_1 - Choose a Matcher - Name of the parameter: Matcher_1. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - GSAy - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_1 - Threshold - Name of the parameter: Threshold_1. Threshold - - - - 0.6 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_1 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_1. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_2 - Choose a Matcher - Name of the parameter: Matcher_2. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - FUZZYMATCH - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_2 - Threshold - Name of the parameter: Threshold_2. Threshold - - - - 0.6 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_2 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_2. The maximum number of matching candidates per each raw input species - - - - 10 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_3 - Choose a Matcher - Name of the parameter: Matcher_3. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - LEVENSHTEIN - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_3 - Threshold - Name of the parameter: Threshold_3. Threshold - - - - 0.4 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_3 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_3. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_4 - Choose a Matcher - Name of the parameter: Matcher_4. Choose a Matcher - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - TRIGRAM - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_4 - Threshold - Name of the parameter: Threshold_4. Threshold - - - - 0.4 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_4 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_4. The maximum number of matching candidates per each raw input species - - - - 5 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Matcher_5 - Choose a Matcher (Optional) - Name of the parameter: Matcher_5. Choose a Matcher (Optional) - - - - GSAy - FUZZYMATCH - LEVENSHTEIN - SOUNDEX - LEV_SDX_TRIG - TRIGRAM - NONE - - NONE - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - Threshold_5 - Threshold (def. 0.2) - Name of the parameter: Threshold_5. Threshold (def. 0.2) - - - - 0.2 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxResults_5 - The maximum number of matching candidates per each raw input species - Name of the parameter: MaxResults_5. The maximum number of matching candidates per each raw input species - - - - 0 - - -2016-05-02 14:45:46 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:45:46 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:45:46 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->SpeciesAuthorName is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: Gadus morhua (Linnaeus, 1758) -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The scientific name of the species, possibly with authorship -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:SpeciesAuthorName -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=Gadus morhua (Linnaeus, 1758), value=null, name=SpeciesAuthorName, description=The scientific name of the species, possibly with authorship [Min N. of Entries:1; Max N. of Entries:1; default:Gadus morhua (Linnaeus, 1758)], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The reference dataset to use -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Parser_Name -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_1 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_1 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_1 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_2 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_2 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_2 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_3 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_3 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_3 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_4 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_4 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_4 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-02 14:45:46 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_5 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_5 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-02 14:45:46 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-02 14:45:46 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:46 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:45:46 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:45:46 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:45:46 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_5 -2016-05-02 14:45:46 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:46 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:45:46 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue=Gadus morhua (Linnaeus, 1758), value=null, name=SpeciesAuthorName, description=The scientific name of the species, possibly with authorship [Min N. of Entries:1; Max N. of Entries:1; default:Gadus morhua (Linnaeus, 1758)], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-02 14:45:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:45:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:45:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:45:56 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY -2016-05-02 14:45:56 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:56 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:45:57 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY - SUBMITQUERY - Algorithm that allows to submit a query - - - ResourceName - The name of the resource - Name of the parameter: ResourceName. The name of the resource - - - - - - - DatabaseName - The name of the database - Name of the parameter: DatabaseName. The name of the database - - - - - - - Read-Only Query - Check the box if the query must be read-only - Name of the parameter: Read-Only Query. Check the box if the query must be read-only - - - - true - false - - true - - - - Apply Smart Correction - Check the box for smart correction - Name of the parameter: Apply Smart Correction. Check the box for smart correction - - - - true - false - - true - - - - Language - Language - Name of the parameter: Language. Language - - - - NONE - POSTGRES - MYSQL - - NONE - - - - Query - query - Name of the parameter: Query. query - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:45:57 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:45:57 DEBUG SClient4WPS:300 - WPSClient->Input: - ResourceName - The name of the resource - Name of the parameter: ResourceName. The name of the resource - - - - - -2016-05-02 14:45:57 DEBUG SClient4WPS:300 - WPSClient->Input: - DatabaseName - The name of the database - Name of the parameter: DatabaseName. The name of the database - - - - - -2016-05-02 14:45:57 DEBUG SClient4WPS:300 - WPSClient->Input: - Read-Only Query - Check the box if the query must be read-only - Name of the parameter: Read-Only Query. Check the box if the query must be read-only - - - - true - false - - true - - -2016-05-02 14:45:57 DEBUG SClient4WPS:300 - WPSClient->Input: - Apply Smart Correction - Check the box for smart correction - Name of the parameter: Apply Smart Correction. Check the box for smart correction - - - - true - false - - true - - -2016-05-02 14:45:57 DEBUG SClient4WPS:300 - WPSClient->Input: - Language - Language - Name of the parameter: Language. Language - - - - NONE - POSTGRES - MYSQL - - NONE - - -2016-05-02 14:45:57 DEBUG SClient4WPS:300 - WPSClient->Input: - Query - query - Name of the parameter: Query. query - - - - - -2016-05-02 14:45:57 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:45:57 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:45:57 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:45:57 DEBUG WPS2SM:291 - Conversion to SM Type->ResourceName is a Literal Input -2016-05-02 14:45:57 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:57 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:57 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:45:57 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the resource -2016-05-02 14:45:57 DEBUG WPS2SM:328 - Conversion to SM Type->Name:ResourceName -2016-05-02 14:45:57 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:57 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=ResourceName, description=The name of the resource [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:45:57 DEBUG WPS2SM:291 - Conversion to SM Type->DatabaseName is a Literal Input -2016-05-02 14:45:57 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:57 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:57 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:45:57 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the database -2016-05-02 14:45:57 DEBUG WPS2SM:328 - Conversion to SM Type->Name:DatabaseName -2016-05-02 14:45:57 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:57 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=DatabaseName, description=The name of the database [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:45:57 DEBUG WPS2SM:291 - Conversion to SM Type->Read-Only Query is a Literal Input -2016-05-02 14:45:57 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:57 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:57 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 14:45:57 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:45:57 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Check the box if the query must be read-only -2016-05-02 14:45:57 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Read-Only Query -2016-05-02 14:45:57 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:57 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Read-Only Query, description=Check the box if the query must be read-only [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 14:45:57 DEBUG WPS2SM:291 - Conversion to SM Type->Apply Smart Correction is a Literal Input -2016-05-02 14:45:57 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:57 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:57 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 14:45:57 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:45:57 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Check the box for smart correction -2016-05-02 14:45:57 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Apply Smart Correction -2016-05-02 14:45:57 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:57 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Apply Smart Correction, description=Check the box for smart correction [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 14:45:57 DEBUG WPS2SM:291 - Conversion to SM Type->Language is a Literal Input -2016-05-02 14:45:57 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:57 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:57 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-02 14:45:57 DEBUG WPS2SM:302 - ValueType[]:[NONE, POSTGRES, MYSQL] -2016-05-02 14:45:57 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Language -2016-05-02 14:45:57 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Language -2016-05-02 14:45:57 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:57 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Language, description=Language [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-02 14:45:57 DEBUG WPS2SM:291 - Conversion to SM Type->Query is a Literal Input -2016-05-02 14:45:57 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:45:57 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:45:57 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:45:57 DEBUG WPS2SM:327 - Conversion to SM Type->Title:query -2016-05-02 14:45:57 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Query -2016-05-02 14:45:57 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:45:57 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Query, description=query [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:45:57 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=ResourceName, description=The name of the resource [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=DatabaseName, description=The name of the database [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], Parameter [name=Read-Only Query, description=Check the box if the query must be read-only [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Apply Smart Correction, description=Check the box for smart correction [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Language, description=Language [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Query, description=query [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT]] -2016-05-02 14:46:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:46:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:01 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER -2016-05-02 14:46:01 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:01 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:02 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER - HCAF_FILTER - An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia) - - - Table_Label - the name of the Filtered Hcaf - Name of the parameter: Table_Label. the name of the Filtered Hcaf - - - - hcaf_filtered - - - - B_Box_Left_Lower_Lat - the left lower latitude of the bounding box (range [-90,+90]) - Name of the parameter: B_Box_Left_Lower_Lat. the left lower latitude of the bounding box (range [-90,+90]) - - - - -17.098 - - - - B_Box_Left_Lower_Long - the left lower longitude of the bounding box (range [-180,+180]) - Name of the parameter: B_Box_Left_Lower_Long. the left lower longitude of the bounding box (range [-180,+180]) - - - - 89.245 - - - - B_Box_Right_Upper_Lat - the right upper latitude of the bounding box (range [-90,+90]) - Name of the parameter: B_Box_Right_Upper_Lat. the right upper latitude of the bounding box (range [-90,+90]) - - - - 25.086 - - - - B_Box_Right_Upper_Long - the right upper longitude of the bounding box (range [-180,+180]) - Name of the parameter: B_Box_Right_Upper_Long. the right upper longitude of the bounding box (range [-180,+180]) - - - - 147.642 - - - - - - OutputTable - a HCAF table focusing on the selected Bounding Box [a http link to a table in UTF-8 ecoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: OutputTable. a HCAF table focusing on the selected Bounding Box [a http link to a table in UTF-8 ecoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:02 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:02 DEBUG SClient4WPS:300 - WPSClient->Input: - Table_Label - the name of the Filtered Hcaf - Name of the parameter: Table_Label. the name of the Filtered Hcaf - - - - hcaf_filtered - - -2016-05-02 14:46:02 DEBUG SClient4WPS:300 - WPSClient->Input: - B_Box_Left_Lower_Lat - the left lower latitude of the bounding box (range [-90,+90]) - Name of the parameter: B_Box_Left_Lower_Lat. the left lower latitude of the bounding box (range [-90,+90]) - - - - -17.098 - - -2016-05-02 14:46:02 DEBUG SClient4WPS:300 - WPSClient->Input: - B_Box_Left_Lower_Long - the left lower longitude of the bounding box (range [-180,+180]) - Name of the parameter: B_Box_Left_Lower_Long. the left lower longitude of the bounding box (range [-180,+180]) - - - - 89.245 - - -2016-05-02 14:46:02 DEBUG SClient4WPS:300 - WPSClient->Input: - B_Box_Right_Upper_Lat - the right upper latitude of the bounding box (range [-90,+90]) - Name of the parameter: B_Box_Right_Upper_Lat. the right upper latitude of the bounding box (range [-90,+90]) - - - - 25.086 - - -2016-05-02 14:46:02 DEBUG SClient4WPS:300 - WPSClient->Input: - B_Box_Right_Upper_Long - the right upper longitude of the bounding box (range [-180,+180]) - Name of the parameter: B_Box_Right_Upper_Long. the right upper longitude of the bounding box (range [-180,+180]) - - - - 147.642 - - -2016-05-02 14:46:02 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:02 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - a HCAF table focusing on the selected Bounding Box [a http link to a table in UTF-8 ecoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: OutputTable. a HCAF table focusing on the selected Bounding Box [a http link to a table in UTF-8 ecoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:46:02 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:02 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:02 DEBUG WPS2SM:291 - Conversion to SM Type->Table_Label is a Literal Input -2016-05-02 14:46:02 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:02 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:02 DEBUG WPS2SM:100 - Guessed default value: hcaf_filtered -2016-05-02 14:46:02 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the name of the Filtered Hcaf -2016-05-02 14:46:02 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Table_Label -2016-05-02 14:46:02 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:02 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=hcaf_filtered, value=null, name=Table_Label, description=the name of the Filtered Hcaf [Min N. of Entries:1; Max N. of Entries:1; default:hcaf_filtered], typology=OBJECT] -2016-05-02 14:46:02 DEBUG WPS2SM:291 - Conversion to SM Type->B_Box_Left_Lower_Lat is a Literal Input -2016-05-02 14:46:02 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:02 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:02 DEBUG WPS2SM:100 - Guessed default value: -17.098 -2016-05-02 14:46:02 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the left lower latitude of the bounding box (range [-90,+90]) -2016-05-02 14:46:02 DEBUG WPS2SM:328 - Conversion to SM Type->Name:B_Box_Left_Lower_Lat -2016-05-02 14:46:02 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:02 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=-17.098, value=null, name=B_Box_Left_Lower_Lat, description=the left lower latitude of the bounding box (range [-90,+90]) [Min N. of Entries:1; Max N. of Entries:1; default:-17.098], typology=OBJECT] -2016-05-02 14:46:02 DEBUG WPS2SM:291 - Conversion to SM Type->B_Box_Left_Lower_Long is a Literal Input -2016-05-02 14:46:02 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:02 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:02 DEBUG WPS2SM:100 - Guessed default value: 89.245 -2016-05-02 14:46:02 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the left lower longitude of the bounding box (range [-180,+180]) -2016-05-02 14:46:02 DEBUG WPS2SM:328 - Conversion to SM Type->Name:B_Box_Left_Lower_Long -2016-05-02 14:46:02 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:02 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=89.245, value=null, name=B_Box_Left_Lower_Long, description=the left lower longitude of the bounding box (range [-180,+180]) [Min N. of Entries:1; Max N. of Entries:1; default:89.245], typology=OBJECT] -2016-05-02 14:46:02 DEBUG WPS2SM:291 - Conversion to SM Type->B_Box_Right_Upper_Lat is a Literal Input -2016-05-02 14:46:02 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:02 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:02 DEBUG WPS2SM:100 - Guessed default value: 25.086 -2016-05-02 14:46:02 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the right upper latitude of the bounding box (range [-90,+90]) -2016-05-02 14:46:02 DEBUG WPS2SM:328 - Conversion to SM Type->Name:B_Box_Right_Upper_Lat -2016-05-02 14:46:02 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:02 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=25.086, value=null, name=B_Box_Right_Upper_Lat, description=the right upper latitude of the bounding box (range [-90,+90]) [Min N. of Entries:1; Max N. of Entries:1; default:25.086], typology=OBJECT] -2016-05-02 14:46:02 DEBUG WPS2SM:291 - Conversion to SM Type->B_Box_Right_Upper_Long is a Literal Input -2016-05-02 14:46:02 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:02 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:02 DEBUG WPS2SM:100 - Guessed default value: 147.642 -2016-05-02 14:46:02 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the right upper longitude of the bounding box (range [-180,+180]) -2016-05-02 14:46:02 DEBUG WPS2SM:328 - Conversion to SM Type->Name:B_Box_Right_Upper_Long -2016-05-02 14:46:02 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:02 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=147.642, value=null, name=B_Box_Right_Upper_Long, description=the right upper longitude of the bounding box (range [-180,+180]) [Min N. of Entries:1; Max N. of Entries:1; default:147.642], typology=OBJECT] -2016-05-02 14:46:02 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue=hcaf_filtered, value=null, name=Table_Label, description=the name of the Filtered Hcaf [Min N. of Entries:1; Max N. of Entries:1; default:hcaf_filtered], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=-17.098, value=null, name=B_Box_Left_Lower_Lat, description=the left lower latitude of the bounding box (range [-90,+90]) [Min N. of Entries:1; Max N. of Entries:1; default:-17.098], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=89.245, value=null, name=B_Box_Left_Lower_Long, description=the left lower longitude of the bounding box (range [-180,+180]) [Min N. of Entries:1; Max N. of Entries:1; default:89.245], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=25.086, value=null, name=B_Box_Right_Upper_Lat, description=the right upper latitude of the bounding box (range [-90,+90]) [Min N. of Entries:1; Max N. of Entries:1; default:25.086], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=147.642, value=null, name=B_Box_Right_Upper_Long, description=the right upper longitude of the bounding box (range [-180,+180]) [Min N. of Entries:1; Max N. of Entries:1; default:147.642], typology=OBJECT]] -2016-05-02 14:46:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:46:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:14 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR -2016-05-02 14:46:14 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:14 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:15 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR - CSQUARE_COLUMN_CREATOR - An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns. - - - InputTable - The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - Longitude_Column - The column containing Longitude information [the name of a column from InputTable] - Name of the parameter: Longitude_Column. The column containing Longitude information [the name of a column from InputTable] - - - - x - - - - Latitude_Column - The column containing Latitude information [the name of a column from InputTable] - Name of the parameter: Latitude_Column. The column containing Latitude information [the name of a column from InputTable] - - - - y - - - - CSquare_Resolution - The resolution of the CSquare codes - Name of the parameter: CSquare_Resolution. The resolution of the CSquare codes - - - - 0.1 - - - - OutputTableName - The name of the output table - Name of the parameter: OutputTableName. The name of the output table - - - - csquaretbl_ - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:15 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:15 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:46:15 DEBUG SClient4WPS:300 - WPSClient->Input: - Longitude_Column - The column containing Longitude information [the name of a column from InputTable] - Name of the parameter: Longitude_Column. The column containing Longitude information [the name of a column from InputTable] - - - - x - - -2016-05-02 14:46:15 DEBUG SClient4WPS:300 - WPSClient->Input: - Latitude_Column - The column containing Latitude information [the name of a column from InputTable] - Name of the parameter: Latitude_Column. The column containing Latitude information [the name of a column from InputTable] - - - - y - - -2016-05-02 14:46:15 DEBUG SClient4WPS:300 - WPSClient->Input: - CSquare_Resolution - The resolution of the CSquare codes - Name of the parameter: CSquare_Resolution. The resolution of the CSquare codes - - - - 0.1 - - -2016-05-02 14:46:15 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableName - The name of the output table - Name of the parameter: OutputTableName. The name of the output table - - - - csquaretbl_ - - -2016-05-02 14:46:15 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:15 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:46:15 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:15 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:15 DEBUG WPS2SM:316 - Conversion to SM Type->InputTable is a Complex Input -2016-05-02 14:46:15 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:46:15 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:46:15 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:46:15 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:46:15 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:46:15 DEBUG WPS2SM:328 - Conversion to SM Type->Name:InputTable -2016-05-02 14:46:15 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:15 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=InputTable, description=The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:46:15 DEBUG WPS2SM:291 - Conversion to SM Type->Longitude_Column is a Literal Input -2016-05-02 14:46:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:15 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:15 DEBUG WPS2SM:100 - Guessed default value: x -2016-05-02 14:46:15 DEBUG WPS2SM:129 - Machter title: The column containing Longitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:x] -2016-05-02 14:46:15 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:15 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-02 14:46:15 DEBUG WPS2SM:132 - Machter start: 45 -2016-05-02 14:46:15 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-02 14:46:15 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:15 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:46:15 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing Longitude information [the name of a column from InputTable] -2016-05-02 14:46:15 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Longitude_Column -2016-05-02 14:46:15 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:15 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Longitude_Column, description=The column containing Longitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:x], typology=COLUMN] -2016-05-02 14:46:15 DEBUG WPS2SM:291 - Conversion to SM Type->Latitude_Column is a Literal Input -2016-05-02 14:46:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:15 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:15 DEBUG WPS2SM:100 - Guessed default value: y -2016-05-02 14:46:15 DEBUG WPS2SM:129 - Machter title: The column containing Latitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:y] -2016-05-02 14:46:15 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:15 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-02 14:46:15 DEBUG WPS2SM:132 - Machter start: 44 -2016-05-02 14:46:15 DEBUG WPS2SM:133 - Machter end: 80 -2016-05-02 14:46:15 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:15 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:46:15 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing Latitude information [the name of a column from InputTable] -2016-05-02 14:46:15 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Latitude_Column -2016-05-02 14:46:15 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:15 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Latitude_Column, description=The column containing Latitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:y], typology=COLUMN] -2016-05-02 14:46:15 DEBUG WPS2SM:291 - Conversion to SM Type->CSquare_Resolution is a Literal Input -2016-05-02 14:46:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:15 DEBUG WPS2SM:100 - Guessed default value: 0.1 -2016-05-02 14:46:15 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The resolution of the CSquare codes -2016-05-02 14:46:15 DEBUG WPS2SM:328 - Conversion to SM Type->Name:CSquare_Resolution -2016-05-02 14:46:15 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.1, value=null, name=CSquare_Resolution, description=The resolution of the CSquare codes [Min N. of Entries:1; Max N. of Entries:1; default:0.1], typology=OBJECT] -2016-05-02 14:46:15 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableName is a Literal Input -2016-05-02 14:46:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:15 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:15 DEBUG WPS2SM:100 - Guessed default value: csquaretbl_ -2016-05-02 14:46:15 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the output table -2016-05-02 14:46:15 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableName -2016-05-02 14:46:15 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=csquaretbl_, value=null, name=OutputTableName, description=The name of the output table [Min N. of Entries:1; Max N. of Entries:1; default:csquaretbl_], typology=OBJECT] -2016-05-02 14:46:15 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=InputTable, description=The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=Longitude_Column, description=The column containing Longitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:x], typology=COLUMN], Parameter [name=Latitude_Column, description=The column containing Latitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:y], typology=COLUMN], ObjectParameter [type=java.lang.Double, defaultValue=0.1, value=null, name=CSquare_Resolution, description=The resolution of the CSquare codes [Min N. of Entries:1; Max N. of Entries:1; default:0.1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=csquaretbl_, value=null, name=OutputTableName, description=The name of the output table [Min N. of Entries:1; Max N. of Entries:1; default:csquaretbl_], typology=OBJECT]] -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:15 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:46:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:15 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:15 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:46:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:15 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:46:15 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:46:15 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:46:15 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:46:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:15 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:46:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:15 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:46:15 INFO WorkspaceExplorerServiceImpl:142 - end time - 209 msc 0 sec -2016-05-02 14:46:15 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:46:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:17 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION -2016-05-02 14:46:17 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:17 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:18 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION - ESRI_GRID_EXTRACTION - An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box. - - - Layer - Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - Name of the parameter: Layer. Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - - - - - - - BBox_LowerLeftLat - Lower Left Latitute of the Bounding Box - Name of the parameter: BBox_LowerLeftLat. Lower Left Latitute of the Bounding Box - - - - -60 - - - - BBox_LowerLeftLong - Lower Left Longitude of the Bounding Box - Name of the parameter: BBox_LowerLeftLong. Lower Left Longitude of the Bounding Box - - - - -50 - - - - BBox_UpperRightLat - Upper Right Latitute of the Bounding Box - Name of the parameter: BBox_UpperRightLat. Upper Right Latitute of the Bounding Box - - - - 60 - - - - BBox_UpperRightLong - Upper Right Longitude of the Bounding Box - Name of the parameter: BBox_UpperRightLong. Upper Right Longitude of the Bounding Box - - - - 50 - - - - Z - Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - - - TimeIndex - Time Index. The default is the first time indexed dataset - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed dataset - - - - 0 - - - - XResolution - Projection resolution on the X axis - Name of the parameter: XResolution. Projection resolution on the X axis - - - - 0.5 - - - - YResolution - Projection resolution on the Y axis - Name of the parameter: YResolution. Projection resolution on the Y axis - - - - 0.5 - - - - - - Output ESRI GRID ASCII FILE - Output ESRI GRID ASCII FILE - Name of the parameter: Output ESRI GRID ASCII FILE. Output ESRI GRID ASCII FILE - - - - application/d4science - - - - - application/d4science - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:18 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - Layer - Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - Name of the parameter: Layer. Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - - - - - -2016-05-02 14:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - BBox_LowerLeftLat - Lower Left Latitute of the Bounding Box - Name of the parameter: BBox_LowerLeftLat. Lower Left Latitute of the Bounding Box - - - - -60 - - -2016-05-02 14:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - BBox_LowerLeftLong - Lower Left Longitude of the Bounding Box - Name of the parameter: BBox_LowerLeftLong. Lower Left Longitude of the Bounding Box - - - - -50 - - -2016-05-02 14:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - BBox_UpperRightLat - Upper Right Latitute of the Bounding Box - Name of the parameter: BBox_UpperRightLat. Upper Right Latitute of the Bounding Box - - - - 60 - - -2016-05-02 14:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - BBox_UpperRightLong - Upper Right Longitude of the Bounding Box - Name of the parameter: BBox_UpperRightLong. Upper Right Longitude of the Bounding Box - - - - 50 - - -2016-05-02 14:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - Z - Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - -2016-05-02 14:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - TimeIndex - Time Index. The default is the first time indexed dataset - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed dataset - - - - 0 - - -2016-05-02 14:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - XResolution - Projection resolution on the X axis - Name of the parameter: XResolution. Projection resolution on the X axis - - - - 0.5 - - -2016-05-02 14:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - YResolution - Projection resolution on the Y axis - Name of the parameter: YResolution. Projection resolution on the Y axis - - - - 0.5 - - -2016-05-02 14:46:18 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:18 DEBUG SClient4WPS:307 - WPSClient->Output: - Output ESRI GRID ASCII FILE - Output ESRI GRID ASCII FILE - Name of the parameter: Output ESRI GRID ASCII FILE. Output ESRI GRID ASCII FILE - - - - application/d4science - - - - - application/d4science - - - - -2016-05-02 14:46:18 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:18 DEBUG WPS2SM:291 - Conversion to SM Type->Layer is a Literal Input -2016-05-02 14:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:46:18 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) -2016-05-02 14:46:18 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Layer -2016-05-02 14:46:18 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Layer, description=Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:46:18 DEBUG WPS2SM:291 - Conversion to SM Type->BBox_LowerLeftLat is a Literal Input -2016-05-02 14:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:18 DEBUG WPS2SM:100 - Guessed default value: -60 -2016-05-02 14:46:18 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Lower Left Latitute of the Bounding Box -2016-05-02 14:46:18 DEBUG WPS2SM:328 - Conversion to SM Type->Name:BBox_LowerLeftLat -2016-05-02 14:46:18 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=-60, value=null, name=BBox_LowerLeftLat, description=Lower Left Latitute of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:-60], typology=OBJECT] -2016-05-02 14:46:18 DEBUG WPS2SM:291 - Conversion to SM Type->BBox_LowerLeftLong is a Literal Input -2016-05-02 14:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:18 DEBUG WPS2SM:100 - Guessed default value: -50 -2016-05-02 14:46:18 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Lower Left Longitude of the Bounding Box -2016-05-02 14:46:18 DEBUG WPS2SM:328 - Conversion to SM Type->Name:BBox_LowerLeftLong -2016-05-02 14:46:18 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=-50, value=null, name=BBox_LowerLeftLong, description=Lower Left Longitude of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:-50], typology=OBJECT] -2016-05-02 14:46:18 DEBUG WPS2SM:291 - Conversion to SM Type->BBox_UpperRightLat is a Literal Input -2016-05-02 14:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:18 DEBUG WPS2SM:100 - Guessed default value: 60 -2016-05-02 14:46:18 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Upper Right Latitute of the Bounding Box -2016-05-02 14:46:18 DEBUG WPS2SM:328 - Conversion to SM Type->Name:BBox_UpperRightLat -2016-05-02 14:46:18 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=60, value=null, name=BBox_UpperRightLat, description=Upper Right Latitute of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:60], typology=OBJECT] -2016-05-02 14:46:18 DEBUG WPS2SM:291 - Conversion to SM Type->BBox_UpperRightLong is a Literal Input -2016-05-02 14:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:18 DEBUG WPS2SM:100 - Guessed default value: 50 -2016-05-02 14:46:18 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Upper Right Longitude of the Bounding Box -2016-05-02 14:46:18 DEBUG WPS2SM:328 - Conversion to SM Type->Name:BBox_UpperRightLong -2016-05-02 14:46:18 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=50, value=null, name=BBox_UpperRightLong, description=Upper Right Longitude of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:50], typology=OBJECT] -2016-05-02 14:46:18 DEBUG WPS2SM:291 - Conversion to SM Type->Z is a Literal Input -2016-05-02 14:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:18 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:18 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer -2016-05-02 14:46:18 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Z -2016-05-02 14:46:18 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:18 DEBUG WPS2SM:291 - Conversion to SM Type->TimeIndex is a Literal Input -2016-05-02 14:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:46:18 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:18 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Time Index. The default is the first time indexed dataset -2016-05-02 14:46:18 DEBUG WPS2SM:328 - Conversion to SM Type->Name:TimeIndex -2016-05-02 14:46:18 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed dataset [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:18 DEBUG WPS2SM:291 - Conversion to SM Type->XResolution is a Literal Input -2016-05-02 14:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:18 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 14:46:18 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Projection resolution on the X axis -2016-05-02 14:46:18 DEBUG WPS2SM:328 - Conversion to SM Type->Name:XResolution -2016-05-02 14:46:18 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=XResolution, description=Projection resolution on the X axis [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 14:46:18 DEBUG WPS2SM:291 - Conversion to SM Type->YResolution is a Literal Input -2016-05-02 14:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:18 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 14:46:18 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Projection resolution on the Y axis -2016-05-02 14:46:18 DEBUG WPS2SM:328 - Conversion to SM Type->Name:YResolution -2016-05-02 14:46:18 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=YResolution, description=Projection resolution on the Y axis [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 14:46:18 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Layer, description=Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=-60, value=null, name=BBox_LowerLeftLat, description=Lower Left Latitute of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:-60], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=-50, value=null, name=BBox_LowerLeftLong, description=Lower Left Longitude of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:-50], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=60, value=null, name=BBox_UpperRightLat, description=Upper Right Latitute of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:60], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=50, value=null, name=BBox_UpperRightLong, description=Upper Right Longitude of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:50], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed dataset [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=XResolution, description=Projection resolution on the X axis [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=YResolution, description=Projection resolution on the Y axis [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT]] -2016-05-02 14:46:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:46:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:22 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR -2016-05-02 14:46:22 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:23 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR - FAO_OCEAN_AREA_COLUMN_CREATOR - An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns. - - - InputTable - The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - Longitude_Column - The column containing Longitude information [the name of a column from InputTable] - Name of the parameter: Longitude_Column. The column containing Longitude information [the name of a column from InputTable] - - - - x - - - - Latitude_Column - The column containing Latitude information [the name of a column from InputTable] - Name of the parameter: Latitude_Column. The column containing Latitude information [the name of a column from InputTable] - - - - y - - - - Resolution - The resolution of the FAO Ocean Area codes - Name of the parameter: Resolution. The resolution of the FAO Ocean Area codes - - - - 5 - - - - OutputTableName - The name of the output table - Name of the parameter: OutputTableName. The name of the output table - - - - faooceanarea_ - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:23 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:23 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:46:23 DEBUG SClient4WPS:300 - WPSClient->Input: - Longitude_Column - The column containing Longitude information [the name of a column from InputTable] - Name of the parameter: Longitude_Column. The column containing Longitude information [the name of a column from InputTable] - - - - x - - -2016-05-02 14:46:23 DEBUG SClient4WPS:300 - WPSClient->Input: - Latitude_Column - The column containing Latitude information [the name of a column from InputTable] - Name of the parameter: Latitude_Column. The column containing Latitude information [the name of a column from InputTable] - - - - y - - -2016-05-02 14:46:23 DEBUG SClient4WPS:300 - WPSClient->Input: - Resolution - The resolution of the FAO Ocean Area codes - Name of the parameter: Resolution. The resolution of the FAO Ocean Area codes - - - - 5 - - -2016-05-02 14:46:23 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableName - The name of the output table - Name of the parameter: OutputTableName. The name of the output table - - - - faooceanarea_ - - -2016-05-02 14:46:23 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:23 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:46:23 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:23 DEBUG WPS2SM:316 - Conversion to SM Type->InputTable is a Complex Input -2016-05-02 14:46:23 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:46:23 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:46:23 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:46:23 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:46:23 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:46:23 DEBUG WPS2SM:328 - Conversion to SM Type->Name:InputTable -2016-05-02 14:46:23 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:23 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=InputTable, description=The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:46:23 DEBUG WPS2SM:291 - Conversion to SM Type->Longitude_Column is a Literal Input -2016-05-02 14:46:23 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:23 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:23 DEBUG WPS2SM:100 - Guessed default value: x -2016-05-02 14:46:23 DEBUG WPS2SM:129 - Machter title: The column containing Longitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:x] -2016-05-02 14:46:23 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:23 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-02 14:46:23 DEBUG WPS2SM:132 - Machter start: 45 -2016-05-02 14:46:23 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-02 14:46:23 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:23 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:46:23 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing Longitude information [the name of a column from InputTable] -2016-05-02 14:46:23 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Longitude_Column -2016-05-02 14:46:23 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:23 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Longitude_Column, description=The column containing Longitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:x], typology=COLUMN] -2016-05-02 14:46:23 DEBUG WPS2SM:291 - Conversion to SM Type->Latitude_Column is a Literal Input -2016-05-02 14:46:23 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:23 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:23 DEBUG WPS2SM:100 - Guessed default value: y -2016-05-02 14:46:23 DEBUG WPS2SM:129 - Machter title: The column containing Latitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:y] -2016-05-02 14:46:23 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:23 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-02 14:46:23 DEBUG WPS2SM:132 - Machter start: 44 -2016-05-02 14:46:23 DEBUG WPS2SM:133 - Machter end: 80 -2016-05-02 14:46:23 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:23 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:46:23 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing Latitude information [the name of a column from InputTable] -2016-05-02 14:46:23 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Latitude_Column -2016-05-02 14:46:23 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:23 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Latitude_Column, description=The column containing Latitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:y], typology=COLUMN] -2016-05-02 14:46:23 DEBUG WPS2SM:291 - Conversion to SM Type->Resolution is a Literal Input -2016-05-02 14:46:23 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:23 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:46:23 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 14:46:23 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The resolution of the FAO Ocean Area codes -2016-05-02 14:46:23 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Resolution -2016-05-02 14:46:23 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:23 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=Resolution, description=The resolution of the FAO Ocean Area codes [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 14:46:23 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableName is a Literal Input -2016-05-02 14:46:23 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:23 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:23 DEBUG WPS2SM:100 - Guessed default value: faooceanarea_ -2016-05-02 14:46:23 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the output table -2016-05-02 14:46:23 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableName -2016-05-02 14:46:23 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:23 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=faooceanarea_, value=null, name=OutputTableName, description=The name of the output table [Min N. of Entries:1; Max N. of Entries:1; default:faooceanarea_], typology=OBJECT] -2016-05-02 14:46:23 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=InputTable, description=The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=Longitude_Column, description=The column containing Longitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:x], typology=COLUMN], Parameter [name=Latitude_Column, description=The column containing Latitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:y], typology=COLUMN], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=Resolution, description=The resolution of the FAO Ocean Area codes [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=faooceanarea_, value=null, name=OutputTableName, description=The name of the output table [Min N. of Entries:1; Max N. of Entries:1; default:faooceanarea_], typology=OBJECT]] -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:46:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:46:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:23 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:46:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:46:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:46:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:46:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:23 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:46:23 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:46:23 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:46:23 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:46:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:23 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:46:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:23 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:46:23 INFO WorkspaceExplorerServiceImpl:142 - end time - 168 msc 0 sec -2016-05-02 14:46:23 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:46:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:46:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:25 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT -2016-05-02 14:46:25 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:25 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:26 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT - FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT - An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns. - - - InputTable - The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - Longitude_Column - The column containing Longitude information [the name of a column from InputTable] - Name of the parameter: Longitude_Column. The column containing Longitude information [the name of a column from InputTable] - - - - x - - - - Latitude_Column - The column containing Latitude information [the name of a column from InputTable] - Name of the parameter: Latitude_Column. The column containing Latitude information [the name of a column from InputTable] - - - - y - - - - Quadrant_Column - The column containing Quadrant information [the name of a column from InputTable] - Name of the parameter: Quadrant_Column. The column containing Quadrant information [the name of a column from InputTable] - - - - quadrant - - - - Resolution - The resolution of the FAO Ocean Area codes - Name of the parameter: Resolution. The resolution of the FAO Ocean Area codes - - - - 5 - - - - OutputTableName - The name of the output table - Name of the parameter: OutputTableName. The name of the output table - - - - faooceanarea_ - - - - - - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:26 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:26 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:46:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Longitude_Column - The column containing Longitude information [the name of a column from InputTable] - Name of the parameter: Longitude_Column. The column containing Longitude information [the name of a column from InputTable] - - - - x - - -2016-05-02 14:46:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Latitude_Column - The column containing Latitude information [the name of a column from InputTable] - Name of the parameter: Latitude_Column. The column containing Latitude information [the name of a column from InputTable] - - - - y - - -2016-05-02 14:46:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Quadrant_Column - The column containing Quadrant information [the name of a column from InputTable] - Name of the parameter: Quadrant_Column. The column containing Quadrant information [the name of a column from InputTable] - - - - quadrant - - -2016-05-02 14:46:26 DEBUG SClient4WPS:300 - WPSClient->Input: - Resolution - The resolution of the FAO Ocean Area codes - Name of the parameter: Resolution. The resolution of the FAO Ocean Area codes - - - - 5 - - -2016-05-02 14:46:26 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableName - The name of the output table - Name of the parameter: OutputTableName. The name of the output table - - - - faooceanarea_ - - -2016-05-02 14:46:26 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:26 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:46:26 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:26 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:26 DEBUG WPS2SM:316 - Conversion to SM Type->InputTable is a Complex Input -2016-05-02 14:46:26 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:46:26 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:46:26 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:46:26 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:46:26 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:46:26 DEBUG WPS2SM:328 - Conversion to SM Type->Name:InputTable -2016-05-02 14:46:26 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:26 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=InputTable, description=The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:46:26 DEBUG WPS2SM:291 - Conversion to SM Type->Longitude_Column is a Literal Input -2016-05-02 14:46:26 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:26 DEBUG WPS2SM:100 - Guessed default value: x -2016-05-02 14:46:26 DEBUG WPS2SM:129 - Machter title: The column containing Longitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:x] -2016-05-02 14:46:26 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:26 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-02 14:46:26 DEBUG WPS2SM:132 - Machter start: 45 -2016-05-02 14:46:26 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-02 14:46:26 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:26 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:46:26 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing Longitude information [the name of a column from InputTable] -2016-05-02 14:46:26 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Longitude_Column -2016-05-02 14:46:26 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Longitude_Column, description=The column containing Longitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:x], typology=COLUMN] -2016-05-02 14:46:26 DEBUG WPS2SM:291 - Conversion to SM Type->Latitude_Column is a Literal Input -2016-05-02 14:46:26 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:26 DEBUG WPS2SM:100 - Guessed default value: y -2016-05-02 14:46:26 DEBUG WPS2SM:129 - Machter title: The column containing Latitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:y] -2016-05-02 14:46:26 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:26 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-02 14:46:26 DEBUG WPS2SM:132 - Machter start: 44 -2016-05-02 14:46:26 DEBUG WPS2SM:133 - Machter end: 80 -2016-05-02 14:46:26 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:26 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:46:26 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing Latitude information [the name of a column from InputTable] -2016-05-02 14:46:26 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Latitude_Column -2016-05-02 14:46:26 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Latitude_Column, description=The column containing Latitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:y], typology=COLUMN] -2016-05-02 14:46:26 DEBUG WPS2SM:291 - Conversion to SM Type->Quadrant_Column is a Literal Input -2016-05-02 14:46:26 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:26 DEBUG WPS2SM:100 - Guessed default value: quadrant -2016-05-02 14:46:26 DEBUG WPS2SM:129 - Machter title: The column containing Quadrant information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:quadrant] -2016-05-02 14:46:26 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:26 DEBUG WPS2SM:131 - Machter group: the name of a column from InputTable -2016-05-02 14:46:26 DEBUG WPS2SM:132 - Machter start: 44 -2016-05-02 14:46:26 DEBUG WPS2SM:133 - Machter end: 80 -2016-05-02 14:46:26 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:26 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: InputTable -2016-05-02 14:46:26 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing Quadrant information [the name of a column from InputTable] -2016-05-02 14:46:26 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Quadrant_Column -2016-05-02 14:46:26 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:26 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quadrant_Column, description=The column containing Quadrant information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:quadrant], typology=COLUMN] -2016-05-02 14:46:26 DEBUG WPS2SM:291 - Conversion to SM Type->Resolution is a Literal Input -2016-05-02 14:46:26 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:26 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:46:26 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 14:46:26 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The resolution of the FAO Ocean Area codes -2016-05-02 14:46:26 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Resolution -2016-05-02 14:46:26 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=Resolution, description=The resolution of the FAO Ocean Area codes [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 14:46:26 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableName is a Literal Input -2016-05-02 14:46:26 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:26 DEBUG WPS2SM:100 - Guessed default value: faooceanarea_ -2016-05-02 14:46:26 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the output table -2016-05-02 14:46:26 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableName -2016-05-02 14:46:26 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:26 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=faooceanarea_, value=null, name=OutputTableName, description=The name of the output table [Min N. of Entries:1; Max N. of Entries:1; default:faooceanarea_], typology=OBJECT] -2016-05-02 14:46:26 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=InputTable, description=The table to which the algorithm adds the csquare column [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=Longitude_Column, description=The column containing Longitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:x], typology=COLUMN], Parameter [name=Latitude_Column, description=The column containing Latitude information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:y], typology=COLUMN], Parameter [name=Quadrant_Column, description=The column containing Quadrant information [the name of a column from InputTable] [Min N. of Entries:1; Max N. of Entries:1; default:quadrant], typology=COLUMN], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=Resolution, description=The resolution of the FAO Ocean Area codes [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=faooceanarea_, value=null, name=OutputTableName, description=The name of the output table [Min N. of Entries:1; Max N. of Entries:1; default:faooceanarea_], typology=OBJECT]] -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:26 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:46:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:46:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:46:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:46:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:26 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:46:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:46:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:46:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:46:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:46:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:46:27 INFO WorkspaceExplorerServiceImpl:142 - end time - 1163 msc 1 sec -2016-05-02 14:46:27 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:30 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT -2016-05-02 14:46:30 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:30 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:30 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT - OCCURRENCE_ENRICHMENT - An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points. - - - OccurrenceTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrenceTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - LongitudeColumn - The column containing longitude values [the name of a column from OccurrenceTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrenceTable] - - - - decimallongitude - - - - LatitudeColumn - The column containing latitude values [the name of a column from OccurrenceTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrenceTable] - - - - decimallatitude - - - - ScientificNameColumn - The column containing Scientific Names [the name of a column from OccurrenceTable] - Name of the parameter: ScientificNameColumn. The column containing Scientific Names [the name of a column from OccurrenceTable] - - - - scientificname - - - - TimeColumn - The column containing time information [the name of a column from OccurrenceTable] - Name of the parameter: TimeColumn. The column containing time information [the name of a column from OccurrenceTable] - - - - eventdate - - - - OptionalFilter - A filter on one of the columns (e.g. basisofrecord='HumanObservation'). Optional - Name of the parameter: OptionalFilter. A filter on one of the columns (e.g. basisofrecord='HumanObservation'). Optional - - - - - - - - Resolution - The spatial resolution in degrees of the association between observations and environmental features - Name of the parameter: Resolution. The spatial resolution in degrees of the association between observations and environmental features - - - - 0.5 - - - - OutputTableName - The name of the output table - Name of the parameter: OutputTableName. The name of the output table - - - - enrich_ - - - - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ) [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ) [a sequence of values separated by | ] (format: String) - - - - - - - FeaturesNames - The list of names for the columns corresponding to the environmental layers. These will be the column names of the resulting table [a sequence of values separated by | ] (format: String) - Name of the parameter: FeaturesNames. The list of names for the columns corresponding to the environmental layers. These will be the column names of the resulting table [a sequence of values separated by | ] (format: String) - - - - - - - - - OutputTable1 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable1. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:30 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrenceTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrenceTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - LongitudeColumn - The column containing longitude values [the name of a column from OccurrenceTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrenceTable] - - - - decimallongitude - - -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - LatitudeColumn - The column containing latitude values [the name of a column from OccurrenceTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrenceTable] - - - - decimallatitude - - -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - ScientificNameColumn - The column containing Scientific Names [the name of a column from OccurrenceTable] - Name of the parameter: ScientificNameColumn. The column containing Scientific Names [the name of a column from OccurrenceTable] - - - - scientificname - - -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - TimeColumn - The column containing time information [the name of a column from OccurrenceTable] - Name of the parameter: TimeColumn. The column containing time information [the name of a column from OccurrenceTable] - - - - eventdate - - -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - OptionalFilter - A filter on one of the columns (e.g. basisofrecord='HumanObservation'). Optional - Name of the parameter: OptionalFilter. A filter on one of the columns (e.g. basisofrecord='HumanObservation'). Optional - - - - - - -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - Resolution - The spatial resolution in degrees of the association between observations and environmental features - Name of the parameter: Resolution. The spatial resolution in degrees of the association between observations and environmental features - - - - 0.5 - - -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableName - The name of the output table - Name of the parameter: OutputTableName. The name of the output table - - - - enrich_ - - -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ) [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ) [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 14:46:30 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesNames - The list of names for the columns corresponding to the environmental layers. These will be the column names of the resulting table [a sequence of values separated by | ] (format: String) - Name of the parameter: FeaturesNames. The list of names for the columns corresponding to the environmental layers. These will be the column names of the resulting table [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 14:46:30 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:30 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable1 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable1. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:46:30 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:30 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:30 DEBUG WPS2SM:316 - Conversion to SM Type->OccurrenceTable is a Complex Input -2016-05-02 14:46:30 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:46:30 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:46:30 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:46:30 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrenceTable -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrenceTable, description=A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:46:30 DEBUG WPS2SM:291 - Conversion to SM Type->LongitudeColumn is a Literal Input -2016-05-02 14:46:30 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:30 DEBUG WPS2SM:100 - Guessed default value: decimallongitude -2016-05-02 14:46:30 DEBUG WPS2SM:129 - Machter title: The column containing longitude values [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude] -2016-05-02 14:46:30 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:30 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrenceTable -2016-05-02 14:46:30 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-02 14:46:30 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-02 14:46:30 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:30 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrenceTable -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing longitude values [the name of a column from OccurrenceTable] -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:LongitudeColumn -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN] -2016-05-02 14:46:30 DEBUG WPS2SM:291 - Conversion to SM Type->LatitudeColumn is a Literal Input -2016-05-02 14:46:30 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:30 DEBUG WPS2SM:100 - Guessed default value: decimallatitude -2016-05-02 14:46:30 DEBUG WPS2SM:129 - Machter title: The column containing latitude values [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude] -2016-05-02 14:46:30 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:30 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrenceTable -2016-05-02 14:46:30 DEBUG WPS2SM:132 - Machter start: 39 -2016-05-02 14:46:30 DEBUG WPS2SM:133 - Machter end: 80 -2016-05-02 14:46:30 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:30 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrenceTable -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing latitude values [the name of a column from OccurrenceTable] -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:LatitudeColumn -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN] -2016-05-02 14:46:30 DEBUG WPS2SM:291 - Conversion to SM Type->ScientificNameColumn is a Literal Input -2016-05-02 14:46:30 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:30 DEBUG WPS2SM:100 - Guessed default value: scientificname -2016-05-02 14:46:30 DEBUG WPS2SM:129 - Machter title: The column containing Scientific Names [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:scientificname] -2016-05-02 14:46:30 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:30 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrenceTable -2016-05-02 14:46:30 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-02 14:46:30 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-02 14:46:30 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:30 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrenceTable -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing Scientific Names [the name of a column from OccurrenceTable] -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:ScientificNameColumn -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=ScientificNameColumn, description=The column containing Scientific Names [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:scientificname], typology=COLUMN] -2016-05-02 14:46:30 DEBUG WPS2SM:291 - Conversion to SM Type->TimeColumn is a Literal Input -2016-05-02 14:46:30 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:30 DEBUG WPS2SM:100 - Guessed default value: eventdate -2016-05-02 14:46:30 DEBUG WPS2SM:129 - Machter title: The column containing time information [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:eventdate] -2016-05-02 14:46:30 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:30 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrenceTable -2016-05-02 14:46:30 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-02 14:46:30 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-02 14:46:30 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:30 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrenceTable -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing time information [the name of a column from OccurrenceTable] -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:TimeColumn -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=TimeColumn, description=The column containing time information [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:eventdate], typology=COLUMN] -2016-05-02 14:46:30 DEBUG WPS2SM:291 - Conversion to SM Type->OptionalFilter is a Literal Input -2016-05-02 14:46:30 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:30 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A filter on one of the columns (e.g. basisofrecord='HumanObservation'). Optional -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OptionalFilter -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=OptionalFilter, description=A filter on one of the columns (e.g. basisofrecord='HumanObservation'). Optional [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:46:30 DEBUG WPS2SM:291 - Conversion to SM Type->Resolution is a Literal Input -2016-05-02 14:46:30 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:30 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:30 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The spatial resolution in degrees of the association between observations and environmental features -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Resolution -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=Resolution, description=The spatial resolution in degrees of the association between observations and environmental features [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 14:46:30 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableName is a Literal Input -2016-05-02 14:46:30 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:30 DEBUG WPS2SM:100 - Guessed default value: enrich_ -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the output table -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableName -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=enrich_, value=null, name=OutputTableName, description=The name of the output table [Min N. of Entries:1; Max N. of Entries:1; default:enrich_], typology=OBJECT] -2016-05-02 14:46:30 DEBUG WPS2SM:291 - Conversion to SM Type->Layers is a Literal Input -2016-05-02 14:46:30 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:30 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:46:30 DEBUG WPS2SM:148 - Machter title: The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ) [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:46:30 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 14:46:30 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 14:46:30 DEBUG WPS2SM:151 - Machter start: 440 -2016-05-02 14:46:30 DEBUG WPS2SM:152 - Machter end: 475 -2016-05-02 14:46:30 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 14:46:30 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ) [a sequence of values separated by | ] (format: String) -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Layers -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ) [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:46:30 DEBUG WPS2SM:291 - Conversion to SM Type->FeaturesNames is a Literal Input -2016-05-02 14:46:30 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:30 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:30 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:46:30 DEBUG WPS2SM:148 - Machter title: The list of names for the columns corresponding to the environmental layers. These will be the column names of the resulting table [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:46:30 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 14:46:30 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 14:46:30 DEBUG WPS2SM:151 - Machter start: 132 -2016-05-02 14:46:30 DEBUG WPS2SM:152 - Machter end: 167 -2016-05-02 14:46:30 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 14:46:30 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 14:46:30 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The list of names for the columns corresponding to the environmental layers. These will be the column names of the resulting table [a sequence of values separated by | ] (format: String) -2016-05-02 14:46:30 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FeaturesNames -2016-05-02 14:46:30 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:30 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=FeaturesNames, description=The list of names for the columns corresponding to the environmental layers. These will be the column names of the resulting table [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:46:30 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrenceTable, description=A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN], Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN], Parameter [name=ScientificNameColumn, description=The column containing Scientific Names [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:scientificname], typology=COLUMN], Parameter [name=TimeColumn, description=The column containing time information [the name of a column from OccurrenceTable] [Min N. of Entries:1; Max N. of Entries:1; default:eventdate], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=OptionalFilter, description=A filter on one of the columns (e.g. basisofrecord='HumanObservation'). Optional [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=Resolution, description=The spatial resolution in degrees of the association between observations and environmental features [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=enrich_, value=null, name=OutputTableName, description=The name of the output table [Min N. of Entries:1; Max N. of Entries:1; default:enrich_], typology=OBJECT], ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ) [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=FeaturesNames, description=The list of names for the columns corresponding to the environmental layers. These will be the column names of the resulting table [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:30 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:46:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:46:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:46:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:46:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:30 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:46:30 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:46:30 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:46:30 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:46:30 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:30 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:46:30 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:30 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:46:30 INFO WorkspaceExplorerServiceImpl:142 - end time - 167 msc 0 sec -2016-05-02 14:46:30 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:46:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:34 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION -2016-05-02 14:46:34 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:34 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:35 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION - TIMEEXTRACTION - An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram. - - - Layer - Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - Name of the parameter: Layer. Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - - - - - - - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - extr_ - - - - X - X coordinate - Name of the parameter: X. X coordinate - - - - 0 - - - - Y - Y coordinate - Name of the parameter: Y. Y coordinate - - - - 0 - - - - Z - Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - - - Resolution - Extraction point resolution - Name of the parameter: Resolution. Extraction point resolution - - - - 0.5 - - - - SamplingFreq - Sampling frequency in Hz. Leave it to -1 if unknown or under 1 - Name of the parameter: SamplingFreq. Sampling frequency in Hz. Leave it to -1 if unknown or under 1 - - - - -1 - - - - - - OutputTable1 - Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - Name of the parameter: OutputTable1. Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - - - - text/csv - - - - - text/csv - - - - - - Note - Note about the signal - Name of the parameter: Note. Note about the signal - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:35 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:35 DEBUG SClient4WPS:300 - WPSClient->Input: - Layer - Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - Name of the parameter: Layer. Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - - - - - -2016-05-02 14:46:35 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - extr_ - - -2016-05-02 14:46:35 DEBUG SClient4WPS:300 - WPSClient->Input: - X - X coordinate - Name of the parameter: X. X coordinate - - - - 0 - - -2016-05-02 14:46:35 DEBUG SClient4WPS:300 - WPSClient->Input: - Y - Y coordinate - Name of the parameter: Y. Y coordinate - - - - 0 - - -2016-05-02 14:46:35 DEBUG SClient4WPS:300 - WPSClient->Input: - Z - Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - -2016-05-02 14:46:35 DEBUG SClient4WPS:300 - WPSClient->Input: - Resolution - Extraction point resolution - Name of the parameter: Resolution. Extraction point resolution - - - - 0.5 - - -2016-05-02 14:46:35 DEBUG SClient4WPS:300 - WPSClient->Input: - SamplingFreq - Sampling frequency in Hz. Leave it to -1 if unknown or under 1 - Name of the parameter: SamplingFreq. Sampling frequency in Hz. Leave it to -1 if unknown or under 1 - - - - -1 - - -2016-05-02 14:46:35 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:35 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable1 - Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - Name of the parameter: OutputTable1. Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:46:35 DEBUG SClient4WPS:307 - WPSClient->Output: - Note - Note about the signal - Name of the parameter: Note. Note about the signal - - - - -2016-05-02 14:46:35 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:35 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:35 DEBUG WPS2SM:291 - Conversion to SM Type->Layer is a Literal Input -2016-05-02 14:46:35 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:35 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:35 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:46:35 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) -2016-05-02 14:46:35 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Layer -2016-05-02 14:46:35 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:35 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Layer, description=Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:46:35 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-02 14:46:35 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:35 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:35 DEBUG WPS2SM:100 - Guessed default value: extr_ -2016-05-02 14:46:35 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the table to produce -2016-05-02 14:46:35 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableLabel -2016-05-02 14:46:35 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:35 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=extr_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:extr_], typology=OBJECT] -2016-05-02 14:46:35 DEBUG WPS2SM:291 - Conversion to SM Type->X is a Literal Input -2016-05-02 14:46:35 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:35 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:35 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:35 DEBUG WPS2SM:327 - Conversion to SM Type->Title:X coordinate -2016-05-02 14:46:35 DEBUG WPS2SM:328 - Conversion to SM Type->Name:X -2016-05-02 14:46:35 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:35 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=X, description=X coordinate [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:35 DEBUG WPS2SM:291 - Conversion to SM Type->Y is a Literal Input -2016-05-02 14:46:35 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:35 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:35 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:35 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Y coordinate -2016-05-02 14:46:35 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Y -2016-05-02 14:46:35 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:35 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Y, description=Y coordinate [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:35 DEBUG WPS2SM:291 - Conversion to SM Type->Z is a Literal Input -2016-05-02 14:46:35 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:35 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:35 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:35 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer -2016-05-02 14:46:35 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Z -2016-05-02 14:46:35 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:35 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:35 DEBUG WPS2SM:291 - Conversion to SM Type->Resolution is a Literal Input -2016-05-02 14:46:35 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:35 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:35 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 14:46:35 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Extraction point resolution -2016-05-02 14:46:35 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Resolution -2016-05-02 14:46:35 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:35 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=Resolution, description=Extraction point resolution [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 14:46:35 DEBUG WPS2SM:291 - Conversion to SM Type->SamplingFreq is a Literal Input -2016-05-02 14:46:35 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:35 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:46:35 DEBUG WPS2SM:100 - Guessed default value: -1 -2016-05-02 14:46:35 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Sampling frequency in Hz. Leave it to -1 if unknown or under 1 -2016-05-02 14:46:35 DEBUG WPS2SM:328 - Conversion to SM Type->Name:SamplingFreq -2016-05-02 14:46:35 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:35 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=-1, value=null, name=SamplingFreq, description=Sampling frequency in Hz. Leave it to -1 if unknown or under 1 [Min N. of Entries:1; Max N. of Entries:1; default:-1], typology=OBJECT] -2016-05-02 14:46:35 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Layer, description=Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=extr_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:extr_], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=X, description=X coordinate [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Y, description=Y coordinate [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=Resolution, description=Extraction point resolution [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=-1, value=null, name=SamplingFreq, description=Sampling frequency in Hz. Leave it to -1 if unknown or under 1 [Min N. of Entries:1; Max N. of Entries:1; default:-1], typology=OBJECT]] -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:46:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:46:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:38 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE -2016-05-02 14:46:38 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:38 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:38 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE - TIMEEXTRACTION_TABLE - An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram. - - - geoReferencedTableName - A geospatial table containing at least x,y information [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: geoReferencedTableName. A geospatial table containing at least x,y information [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - xColumn - The column containing x (longitude) information [the name of a column from geoReferencedTableName] - Name of the parameter: xColumn. The column containing x (longitude) information [the name of a column from geoReferencedTableName] - - - - x - - - - yColumn - The column containing y (latitude) information [the name of a column from geoReferencedTableName] - Name of the parameter: yColumn. The column containing y (latitude) information [the name of a column from geoReferencedTableName] - - - - y - - - - timeColumn - The column containing time information [the name of a column from geoReferencedTableName] - Name of the parameter: timeColumn. The column containing time information [the name of a column from geoReferencedTableName] - - - - datetime - - - - valueColumn - A column containing real valued features [the name of a column from geoReferencedTableName] - Name of the parameter: valueColumn. A column containing real valued features [the name of a column from geoReferencedTableName] - - - - value - - - - filter - A filter on one of the columns (e.g. speed=2) - Name of the parameter: filter. A filter on one of the columns (e.g. speed=2) - - - - - - - - zColumn - The column containing z (altitude or depth) information (optional) - Name of the parameter: zColumn. The column containing z (altitude or depth) information (optional) - - - - z - - - - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - extr_ - - - - X - X coordinate - Name of the parameter: X. X coordinate - - - - 0 - - - - Y - Y coordinate - Name of the parameter: Y. Y coordinate - - - - 0 - - - - Z - Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - - - Resolution - Extraction point resolution - Name of the parameter: Resolution. Extraction point resolution - - - - 0.5 - - - - SamplingFreq - Sampling frequency in Hz. Leave it to -1 if unknown or under 1 - Name of the parameter: SamplingFreq. Sampling frequency in Hz. Leave it to -1 if unknown or under 1 - - - - -1 - - - - - - OutputTable1 - Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - Name of the parameter: OutputTable1. Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - - - - text/csv - - - - - text/csv - - - - - - Note - Note about the signal - Name of the parameter: Note. Note about the signal - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:38 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - geoReferencedTableName - A geospatial table containing at least x,y information [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: geoReferencedTableName. A geospatial table containing at least x,y information [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - xColumn - The column containing x (longitude) information [the name of a column from geoReferencedTableName] - Name of the parameter: xColumn. The column containing x (longitude) information [the name of a column from geoReferencedTableName] - - - - x - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - yColumn - The column containing y (latitude) information [the name of a column from geoReferencedTableName] - Name of the parameter: yColumn. The column containing y (latitude) information [the name of a column from geoReferencedTableName] - - - - y - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - timeColumn - The column containing time information [the name of a column from geoReferencedTableName] - Name of the parameter: timeColumn. The column containing time information [the name of a column from geoReferencedTableName] - - - - datetime - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - valueColumn - A column containing real valued features [the name of a column from geoReferencedTableName] - Name of the parameter: valueColumn. A column containing real valued features [the name of a column from geoReferencedTableName] - - - - value - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - filter - A filter on one of the columns (e.g. speed=2) - Name of the parameter: filter. A filter on one of the columns (e.g. speed=2) - - - - - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - zColumn - The column containing z (altitude or depth) information (optional) - Name of the parameter: zColumn. The column containing z (altitude or depth) information (optional) - - - - z - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - extr_ - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - X - X coordinate - Name of the parameter: X. X coordinate - - - - 0 - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - Y - Y coordinate - Name of the parameter: Y. Y coordinate - - - - 0 - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - Z - Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - Resolution - Extraction point resolution - Name of the parameter: Resolution. Extraction point resolution - - - - 0.5 - - -2016-05-02 14:46:38 DEBUG SClient4WPS:300 - WPSClient->Input: - SamplingFreq - Sampling frequency in Hz. Leave it to -1 if unknown or under 1 - Name of the parameter: SamplingFreq. Sampling frequency in Hz. Leave it to -1 if unknown or under 1 - - - - -1 - - -2016-05-02 14:46:38 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:38 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable1 - Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - Name of the parameter: OutputTable1. Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:46:38 DEBUG SClient4WPS:307 - WPSClient->Output: - Note - Note about the signal - Name of the parameter: Note. Note about the signal - - - - -2016-05-02 14:46:38 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:38 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:38 DEBUG WPS2SM:316 - Conversion to SM Type->geoReferencedTableName is a Complex Input -2016-05-02 14:46:38 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:46:38 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:46:38 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:46:38 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A geospatial table containing at least x,y information [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:geoReferencedTableName -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=geoReferencedTableName, description=A geospatial table containing at least x,y information [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->xColumn is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: x -2016-05-02 14:46:38 DEBUG WPS2SM:129 - Machter title: The column containing x (longitude) information [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:x] -2016-05-02 14:46:38 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:38 DEBUG WPS2SM:131 - Machter group: the name of a column from geoReferencedTableName -2016-05-02 14:46:38 DEBUG WPS2SM:132 - Machter start: 49 -2016-05-02 14:46:38 DEBUG WPS2SM:133 - Machter end: 97 -2016-05-02 14:46:38 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:38 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: geoReferencedTableName -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing x (longitude) information [the name of a column from geoReferencedTableName] -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:xColumn -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=xColumn, description=The column containing x (longitude) information [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:x], typology=COLUMN] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->yColumn is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: y -2016-05-02 14:46:38 DEBUG WPS2SM:129 - Machter title: The column containing y (latitude) information [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:y] -2016-05-02 14:46:38 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:38 DEBUG WPS2SM:131 - Machter group: the name of a column from geoReferencedTableName -2016-05-02 14:46:38 DEBUG WPS2SM:132 - Machter start: 48 -2016-05-02 14:46:38 DEBUG WPS2SM:133 - Machter end: 96 -2016-05-02 14:46:38 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:38 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: geoReferencedTableName -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing y (latitude) information [the name of a column from geoReferencedTableName] -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:yColumn -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=yColumn, description=The column containing y (latitude) information [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:y], typology=COLUMN] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->timeColumn is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: datetime -2016-05-02 14:46:38 DEBUG WPS2SM:129 - Machter title: The column containing time information [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:datetime] -2016-05-02 14:46:38 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:38 DEBUG WPS2SM:131 - Machter group: the name of a column from geoReferencedTableName -2016-05-02 14:46:38 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-02 14:46:38 DEBUG WPS2SM:133 - Machter end: 88 -2016-05-02 14:46:38 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:38 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: geoReferencedTableName -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing time information [the name of a column from geoReferencedTableName] -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:timeColumn -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=timeColumn, description=The column containing time information [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:datetime], typology=COLUMN] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->valueColumn is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: value -2016-05-02 14:46:38 DEBUG WPS2SM:129 - Machter title: A column containing real valued features [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:value] -2016-05-02 14:46:38 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:46:38 DEBUG WPS2SM:131 - Machter group: the name of a column from geoReferencedTableName -2016-05-02 14:46:38 DEBUG WPS2SM:132 - Machter start: 42 -2016-05-02 14:46:38 DEBUG WPS2SM:133 - Machter end: 90 -2016-05-02 14:46:38 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:46:38 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: geoReferencedTableName -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A column containing real valued features [the name of a column from geoReferencedTableName] -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:valueColumn -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=valueColumn, description=A column containing real valued features [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:value], typology=COLUMN] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->filter is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A filter on one of the columns (e.g. speed=2) -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:filter -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=filter, description=A filter on one of the columns (e.g. speed=2) [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->zColumn is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: z -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing z (altitude or depth) information (optional) -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:zColumn -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=z, value=null, name=zColumn, description=The column containing z (altitude or depth) information (optional) [Min N. of Entries:1; Max N. of Entries:1; default:z], typology=OBJECT] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: extr_ -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the table to produce -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableLabel -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=extr_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:extr_], typology=OBJECT] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->X is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:X coordinate -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:X -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=X, description=X coordinate [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->Y is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Y coordinate -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Y -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Y, description=Y coordinate [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->Z is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Z -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->Resolution is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Extraction point resolution -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Resolution -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=Resolution, description=Extraction point resolution [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 14:46:38 DEBUG WPS2SM:291 - Conversion to SM Type->SamplingFreq is a Literal Input -2016-05-02 14:46:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:38 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:46:38 DEBUG WPS2SM:100 - Guessed default value: -1 -2016-05-02 14:46:38 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Sampling frequency in Hz. Leave it to -1 if unknown or under 1 -2016-05-02 14:46:38 DEBUG WPS2SM:328 - Conversion to SM Type->Name:SamplingFreq -2016-05-02 14:46:38 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:38 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=-1, value=null, name=SamplingFreq, description=Sampling frequency in Hz. Leave it to -1 if unknown or under 1 [Min N. of Entries:1; Max N. of Entries:1; default:-1], typology=OBJECT] -2016-05-02 14:46:38 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=geoReferencedTableName, description=A geospatial table containing at least x,y information [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=xColumn, description=The column containing x (longitude) information [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:x], typology=COLUMN], Parameter [name=yColumn, description=The column containing y (latitude) information [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:y], typology=COLUMN], Parameter [name=timeColumn, description=The column containing time information [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:datetime], typology=COLUMN], Parameter [name=valueColumn, description=A column containing real valued features [the name of a column from geoReferencedTableName] [Min N. of Entries:1; Max N. of Entries:1; default:value], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=filter, description=A filter on one of the columns (e.g. speed=2) [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=z, value=null, name=zColumn, description=The column containing z (altitude or depth) information (optional) [Min N. of Entries:1; Max N. of Entries:1; default:z], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=extr_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:extr_], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=X, description=X coordinate [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Y, description=Y coordinate [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=Resolution, description=Extraction point resolution [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=-1, value=null, name=SamplingFreq, description=Sampling frequency in Hz. Leave it to -1 if unknown or under 1 [Min N. of Entries:1; Max N. of Entries:1; default:-1], typology=OBJECT]] -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:38 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:46:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:46:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:46:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:38 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:46:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:38 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:46:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:46:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:46:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:46:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:46:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:46:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 220 msc 0 sec -2016-05-02 14:46:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:46:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:46:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:46:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:43 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR -2016-05-02 14:46:43 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:43 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:43 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR - XYEXTRACTOR - An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box. - - - Layer - Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - Name of the parameter: Layer. Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - - - - - - - BBox_LowerLeftLat - Lower Left Latitute of the Bounding Box - Name of the parameter: BBox_LowerLeftLat. Lower Left Latitute of the Bounding Box - - - - -60 - - - - BBox_LowerLeftLong - Lower Left Longitude of the Bounding Box - Name of the parameter: BBox_LowerLeftLong. Lower Left Longitude of the Bounding Box - - - - -50 - - - - BBox_UpperRightLat - Upper Right Latitute of the Bounding Box - Name of the parameter: BBox_UpperRightLat. Upper Right Latitute of the Bounding Box - - - - 60 - - - - BBox_UpperRightLong - Upper Right Longitude of the Bounding Box - Name of the parameter: BBox_UpperRightLong. Upper Right Longitude of the Bounding Box - - - - 50 - - - - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - extr_ - - - - Z - Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - - - TimeIndex - Time Index. The default is the first time indexed dataset - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed dataset - - - - 0 - - - - XResolution - Projection resolution on the X axis - Name of the parameter: XResolution. Projection resolution on the X axis - - - - 0.5 - - - - YResolution - Projection resolution on the Y axis - Name of the parameter: YResolution. Projection resolution on the Y axis - - - - 0.5 - - - - - - OutputTable1 - Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - Name of the parameter: OutputTable1. Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:43 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - Layer - Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - Name of the parameter: Layer. Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) - - - - - -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - BBox_LowerLeftLat - Lower Left Latitute of the Bounding Box - Name of the parameter: BBox_LowerLeftLat. Lower Left Latitute of the Bounding Box - - - - -60 - - -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - BBox_LowerLeftLong - Lower Left Longitude of the Bounding Box - Name of the parameter: BBox_LowerLeftLong. Lower Left Longitude of the Bounding Box - - - - -50 - - -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - BBox_UpperRightLat - Upper Right Latitute of the Bounding Box - Name of the parameter: BBox_UpperRightLat. Upper Right Latitute of the Bounding Box - - - - 60 - - -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - BBox_UpperRightLong - Upper Right Longitude of the Bounding Box - Name of the parameter: BBox_UpperRightLong. Upper Right Longitude of the Bounding Box - - - - 50 - - -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - extr_ - - -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - Z - Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - TimeIndex - Time Index. The default is the first time indexed dataset - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed dataset - - - - 0 - - -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - XResolution - Projection resolution on the X axis - Name of the parameter: XResolution. Projection resolution on the X axis - - - - 0.5 - - -2016-05-02 14:46:43 DEBUG SClient4WPS:300 - WPSClient->Input: - YResolution - Projection resolution on the Y axis - Name of the parameter: YResolution. Projection resolution on the Y axis - - - - 0.5 - - -2016-05-02 14:46:43 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:43 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable1 - Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - Name of the parameter: OutputTable1. Output table [a http link to a table in UTF-8 ecoding following this template: (TIMESERIES) http://goo.gl/DoW6fg] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:46:43 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:43 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->Layer is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Layer -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Layer, description=Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->BBox_LowerLeftLat is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: -60 -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Lower Left Latitute of the Bounding Box -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:BBox_LowerLeftLat -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=-60, value=null, name=BBox_LowerLeftLat, description=Lower Left Latitute of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:-60], typology=OBJECT] -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->BBox_LowerLeftLong is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: -50 -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Lower Left Longitude of the Bounding Box -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:BBox_LowerLeftLong -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=-50, value=null, name=BBox_LowerLeftLong, description=Lower Left Longitude of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:-50], typology=OBJECT] -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->BBox_UpperRightLat is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: 60 -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Upper Right Latitute of the Bounding Box -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:BBox_UpperRightLat -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=60, value=null, name=BBox_UpperRightLat, description=Upper Right Latitute of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:60], typology=OBJECT] -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->BBox_UpperRightLong is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: 50 -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Upper Right Longitude of the Bounding Box -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:BBox_UpperRightLong -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=50, value=null, name=BBox_UpperRightLong, description=Upper Right Longitude of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:50], typology=OBJECT] -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: extr_ -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the table to produce -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableLabel -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=extr_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:extr_], typology=OBJECT] -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->Z is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Z -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->TimeIndex is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Time Index. The default is the first time indexed dataset -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:TimeIndex -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed dataset [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->XResolution is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Projection resolution on the X axis -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:XResolution -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=XResolution, description=Projection resolution on the X axis [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 14:46:43 DEBUG WPS2SM:291 - Conversion to SM Type->YResolution is a Literal Input -2016-05-02 14:46:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:43 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:46:43 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 14:46:43 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Projection resolution on the Y axis -2016-05-02 14:46:43 DEBUG WPS2SM:328 - Conversion to SM Type->Name:YResolution -2016-05-02 14:46:43 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:43 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=YResolution, description=Projection resolution on the Y axis [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 14:46:43 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=Layer, description=Layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS ASC, GeoTiff ) [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=-60, value=null, name=BBox_LowerLeftLat, description=Lower Left Latitute of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:-60], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=-50, value=null, name=BBox_LowerLeftLong, description=Lower Left Longitude of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:-50], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=60, value=null, name=BBox_UpperRightLat, description=Upper Right Latitute of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:60], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=50, value=null, name=BBox_UpperRightLong, description=Upper Right Longitude of the Bounding Box [Min N. of Entries:1; Max N. of Entries:1; default:50], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=extr_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:extr_], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed dataset [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=XResolution, description=Projection resolution on the X axis [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=YResolution, description=Projection resolution on the Y axis [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT]] -2016-05-02 14:46:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:46:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:46:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:46:51 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS -2016-05-02 14:46:51 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:51 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:46:52 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS - ABSENCE_CELLS_FROM_AQUAMAPS - An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution - - - Table_Label - the name of the Filtered Hcaf - Name of the parameter: Table_Label. the name of the Filtered Hcaf - - - - AbsenceCells_ - - - - Aquamaps_HSPEC - an Aquamaps table from which to produce the absence points [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - Name of the parameter: Aquamaps_HSPEC. an Aquamaps table from which to produce the absence points [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - Take_Randomly - a flag for taking points randomly (true) or close together (false) - Name of the parameter: Take_Randomly. a flag for taking points randomly (true) or close together (false) - - - - true - false - - true - - - - Number_of_Points - number of points to take - Name of the parameter: Number_of_Points. number of points to take - - - - 20 - - - - Species_Code - the species code according to the Fish-Base conventions - Name of the parameter: Species_Code. the species code according to the Fish-Base conventions - - - - Fis-30189 - - - - - - OutputTable - a HCAF table containing Absence Points cells [a http link to a table in UTF-8 ecoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: OutputTable. a HCAF table containing Absence Points cells [a http link to a table in UTF-8 ecoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:46:52 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:46:52 DEBUG SClient4WPS:300 - WPSClient->Input: - Table_Label - the name of the Filtered Hcaf - Name of the parameter: Table_Label. the name of the Filtered Hcaf - - - - AbsenceCells_ - - -2016-05-02 14:46:52 DEBUG SClient4WPS:300 - WPSClient->Input: - Aquamaps_HSPEC - an Aquamaps table from which to produce the absence points [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - Name of the parameter: Aquamaps_HSPEC. an Aquamaps table from which to produce the absence points [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:46:52 DEBUG SClient4WPS:300 - WPSClient->Input: - Take_Randomly - a flag for taking points randomly (true) or close together (false) - Name of the parameter: Take_Randomly. a flag for taking points randomly (true) or close together (false) - - - - true - false - - true - - -2016-05-02 14:46:52 DEBUG SClient4WPS:300 - WPSClient->Input: - Number_of_Points - number of points to take - Name of the parameter: Number_of_Points. number of points to take - - - - 20 - - -2016-05-02 14:46:52 DEBUG SClient4WPS:300 - WPSClient->Input: - Species_Code - the species code according to the Fish-Base conventions - Name of the parameter: Species_Code. the species code according to the Fish-Base conventions - - - - Fis-30189 - - -2016-05-02 14:46:52 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:46:52 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - a HCAF table containing Absence Points cells [a http link to a table in UTF-8 ecoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: OutputTable. a HCAF table containing Absence Points cells [a http link to a table in UTF-8 ecoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 14:46:52 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:46:52 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:46:52 DEBUG WPS2SM:291 - Conversion to SM Type->Table_Label is a Literal Input -2016-05-02 14:46:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:52 DEBUG WPS2SM:100 - Guessed default value: AbsenceCells_ -2016-05-02 14:46:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the name of the Filtered Hcaf -2016-05-02 14:46:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Table_Label -2016-05-02 14:46:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:52 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=AbsenceCells_, value=null, name=Table_Label, description=the name of the Filtered Hcaf [Min N. of Entries:1; Max N. of Entries:1; default:AbsenceCells_], typology=OBJECT] -2016-05-02 14:46:52 DEBUG WPS2SM:316 - Conversion to SM Type->Aquamaps_HSPEC is a Complex Input -2016-05-02 14:46:52 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:46:52 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:46:52 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:46:52 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:46:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:an Aquamaps table from which to produce the absence points [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] -2016-05-02 14:46:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Aquamaps_HSPEC -2016-05-02 14:46:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:52 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=Aquamaps_HSPEC, description=an Aquamaps table from which to produce the absence points [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:46:52 DEBUG WPS2SM:291 - Conversion to SM Type->Take_Randomly is a Literal Input -2016-05-02 14:46:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:52 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 14:46:52 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:46:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:a flag for taking points randomly (true) or close together (false) -2016-05-02 14:46:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Take_Randomly -2016-05-02 14:46:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:52 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Take_Randomly, description=a flag for taking points randomly (true) or close together (false) [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 14:46:52 DEBUG WPS2SM:291 - Conversion to SM Type->Number_of_Points is a Literal Input -2016-05-02 14:46:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:52 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:46:52 DEBUG WPS2SM:100 - Guessed default value: 20 -2016-05-02 14:46:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:number of points to take -2016-05-02 14:46:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Number_of_Points -2016-05-02 14:46:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:52 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=Number_of_Points, description=number of points to take [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT] -2016-05-02 14:46:52 DEBUG WPS2SM:291 - Conversion to SM Type->Species_Code is a Literal Input -2016-05-02 14:46:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:46:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:46:52 DEBUG WPS2SM:100 - Guessed default value: Fis-30189 -2016-05-02 14:46:52 DEBUG WPS2SM:327 - Conversion to SM Type->Title:the species code according to the Fish-Base conventions -2016-05-02 14:46:52 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Species_Code -2016-05-02 14:46:52 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:46:52 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=Fis-30189, value=null, name=Species_Code, description=the species code according to the Fish-Base conventions [Min N. of Entries:1; Max N. of Entries:1; default:Fis-30189], typology=OBJECT] -2016-05-02 14:46:52 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue=AbsenceCells_, value=null, name=Table_Label, description=the name of the Filtered Hcaf [Min N. of Entries:1; Max N. of Entries:1; default:AbsenceCells_], typology=OBJECT], TabularParameter [tableName= , templates=[], name=Aquamaps_HSPEC, description=an Aquamaps table from which to produce the absence points [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=Take_Randomly, description=a flag for taking points randomly (true) or close together (false) [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=Number_of_Points, description=number of points to take [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=Fis-30189, value=null, name=Species_Code, description=the species code according to the Fish-Base conventions [Min N. of Entries:1; Max N. of Entries:1; default:Fis-30189], typology=OBJECT]] -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:52 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:46:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:52 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:46:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:46:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:46:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:46:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:46:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:46:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:46:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:46:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:46:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:46:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:46:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:46:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:46:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:46:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:46:52 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:46:52 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:46:52 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:46:52 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:46:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:52 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:46:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:46:52 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:46:52 INFO WorkspaceExplorerServiceImpl:142 - end time - 192 msc 0 sec -2016-05-02 14:46:52 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:47:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:47:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:47:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:47:03 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS -2016-05-02 14:47:03 DEBUG WPS2SM:316 - Conversion to SM Type->PositiveCasesTable is a Complex Input -2016-05-02 14:47:03 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:47:03 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:47:03 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:47:03 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:47:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 14:47:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PositiveCasesTable -2016-05-02 14:47:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:03 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=PositiveCasesTable, description=A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:47:03 DEBUG WPS2SM:316 - Conversion to SM Type->NegativeCasesTable is a Complex Input -2016-05-02 14:47:03 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:47:03 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:47:03 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:47:03 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:47:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 14:47:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:NegativeCasesTable -2016-05-02 14:47:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:03 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=NegativeCasesTable, description=A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:47:03 DEBUG WPS2SM:291 - Conversion to SM Type->PositiveCasesTableKeyColumn is a Literal Input -2016-05-02 14:47:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:47:03 DEBUG WPS2SM:100 - Guessed default value: csquarecode -2016-05-02 14:47:03 DEBUG WPS2SM:129 - Machter title: Positive Cases Table Key Column [the name of a column from PositiveCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode] -2016-05-02 14:47:03 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:47:03 DEBUG WPS2SM:131 - Machter group: the name of a column from PositiveCasesTable -2016-05-02 14:47:03 DEBUG WPS2SM:132 - Machter start: 33 -2016-05-02 14:47:03 DEBUG WPS2SM:133 - Machter end: 77 -2016-05-02 14:47:03 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:47:03 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: PositiveCasesTable -2016-05-02 14:47:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Positive Cases Table Key Column [the name of a column from PositiveCasesTable] -2016-05-02 14:47:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PositiveCasesTableKeyColumn -2016-05-02 14:47:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:03 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=PositiveCasesTableKeyColumn, description=Positive Cases Table Key Column [the name of a column from PositiveCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN] -2016-05-02 14:47:03 DEBUG WPS2SM:291 - Conversion to SM Type->NegativeCasesTableKeyColumn is a Literal Input -2016-05-02 14:47:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:47:03 DEBUG WPS2SM:100 - Guessed default value: csquarecode -2016-05-02 14:47:03 DEBUG WPS2SM:129 - Machter title: Negative Cases Table Key Column [the name of a column from NegativeCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode] -2016-05-02 14:47:03 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:47:03 DEBUG WPS2SM:131 - Machter group: the name of a column from NegativeCasesTable -2016-05-02 14:47:03 DEBUG WPS2SM:132 - Machter start: 33 -2016-05-02 14:47:03 DEBUG WPS2SM:133 - Machter end: 77 -2016-05-02 14:47:03 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:47:03 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: NegativeCasesTable -2016-05-02 14:47:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Negative Cases Table Key Column [the name of a column from NegativeCasesTable] -2016-05-02 14:47:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:NegativeCasesTableKeyColumn -2016-05-02 14:47:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:03 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=NegativeCasesTableKeyColumn, description=Negative Cases Table Key Column [the name of a column from NegativeCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN] -2016-05-02 14:47:03 DEBUG WPS2SM:316 - Conversion to SM Type->DistributionTable is a Complex Input -2016-05-02 14:47:03 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:47:03 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:47:03 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:47:03 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:47:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] -2016-05-02 14:47:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:DistributionTable -2016-05-02 14:47:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:03 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=DistributionTable, description=A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:47:03 DEBUG WPS2SM:291 - Conversion to SM Type->DistributionTableKeyColumn is a Literal Input -2016-05-02 14:47:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:47:03 DEBUG WPS2SM:100 - Guessed default value: csquarecode -2016-05-02 14:47:03 DEBUG WPS2SM:129 - Machter title: Distribution Table Key Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode] -2016-05-02 14:47:03 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:47:03 DEBUG WPS2SM:131 - Machter group: the name of a column from DistributionTable -2016-05-02 14:47:03 DEBUG WPS2SM:132 - Machter start: 31 -2016-05-02 14:47:03 DEBUG WPS2SM:133 - Machter end: 74 -2016-05-02 14:47:03 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:47:03 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: DistributionTable -2016-05-02 14:47:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Distribution Table Key Column [the name of a column from DistributionTable] -2016-05-02 14:47:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:DistributionTableKeyColumn -2016-05-02 14:47:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:03 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=DistributionTableKeyColumn, description=Distribution Table Key Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN] -2016-05-02 14:47:03 DEBUG WPS2SM:291 - Conversion to SM Type->DistributionTableProbabilityColumn is a Literal Input -2016-05-02 14:47:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:47:03 DEBUG WPS2SM:100 - Guessed default value: probability -2016-05-02 14:47:03 DEBUG WPS2SM:129 - Machter title: Distribution Table Probability Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability] -2016-05-02 14:47:03 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:47:03 DEBUG WPS2SM:131 - Machter group: the name of a column from DistributionTable -2016-05-02 14:47:03 DEBUG WPS2SM:132 - Machter start: 39 -2016-05-02 14:47:03 DEBUG WPS2SM:133 - Machter end: 82 -2016-05-02 14:47:03 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:47:03 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: DistributionTable -2016-05-02 14:47:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Distribution Table Probability Column [the name of a column from DistributionTable] -2016-05-02 14:47:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:DistributionTableProbabilityColumn -2016-05-02 14:47:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:03 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=DistributionTableProbabilityColumn, description=Distribution Table Probability Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability], typology=COLUMN] -2016-05-02 14:47:03 DEBUG WPS2SM:291 - Conversion to SM Type->PositiveThreshold is a Literal Input -2016-05-02 14:47:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:47:03 DEBUG WPS2SM:100 - Guessed default value: 0.8 -2016-05-02 14:47:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Positive acceptance threshold -2016-05-02 14:47:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PositiveThreshold -2016-05-02 14:47:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=0.8, value=null, name=PositiveThreshold, description=Positive acceptance threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.8], typology=OBJECT] -2016-05-02 14:47:03 DEBUG WPS2SM:291 - Conversion to SM Type->NegativeThreshold is a Literal Input -2016-05-02 14:47:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:47:03 DEBUG WPS2SM:100 - Guessed default value: 0.3 -2016-05-02 14:47:03 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Negative acceptance threshold -2016-05-02 14:47:03 DEBUG WPS2SM:328 - Conversion to SM Type->Name:NegativeThreshold -2016-05-02 14:47:03 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=0.3, value=null, name=NegativeThreshold, description=Negative acceptance threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.3], typology=OBJECT] -2016-05-02 14:47:03 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=PositiveCasesTable, description=A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], TabularParameter [tableName= , templates=[], name=NegativeCasesTable, description=A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=PositiveCasesTableKeyColumn, description=Positive Cases Table Key Column [the name of a column from PositiveCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN], Parameter [name=NegativeCasesTableKeyColumn, description=Negative Cases Table Key Column [the name of a column from NegativeCasesTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN], TabularParameter [tableName= , templates=[], name=DistributionTable, description=A probability distribution table [a http link to a table in UTF-8 encoding following this template: (HSPEC) http://goo.gl/OvKa1h] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=DistributionTableKeyColumn, description=Distribution Table Key Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:csquarecode], typology=COLUMN], Parameter [name=DistributionTableProbabilityColumn, description=Distribution Table Probability Column [the name of a column from DistributionTable] [Min N. of Entries:1; Max N. of Entries:1; default:probability], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=0.8, value=null, name=PositiveThreshold, description=Positive acceptance threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.8], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=0.3, value=null, name=NegativeThreshold, description=Negative acceptance threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.3], typology=OBJECT]] -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:47:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 177 msc 0 sec -2016-05-02 14:47:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:47:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:47:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-02 14:47:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:47:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:47:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:47:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:47:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:47:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 151 msc 0 sec -2016-05-02 14:47:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:47:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:47:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:47:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:47:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:47:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:47:09 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA -2016-05-02 14:47:09 DEBUG WPS2SM:291 - Conversion to SM Type->StartYear is a Literal Input -2016-05-02 14:47:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:09 DEBUG WPS2SM:100 - Guessed default value: 1950 -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:First year of the dataset temporal extent -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:StartYear -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1950, value=null, name=StartYear, description=First year of the dataset temporal extent [Min N. of Entries:1; Max N. of Entries:1; default:1950], typology=OBJECT] -2016-05-02 14:47:09 DEBUG WPS2SM:291 - Conversion to SM Type->EndYear is a Literal Input -2016-05-02 14:47:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:09 DEBUG WPS2SM:100 - Guessed default value: 2013 -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Last year of the dataset temporal extent -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:EndYear -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=2013, value=null, name=EndYear, description=Last year of the dataset temporal extent [Min N. of Entries:1; Max N. of Entries:1; default:2013], typology=OBJECT] -2016-05-02 14:47:09 DEBUG WPS2SM:316 - Conversion to SM Type->CAAFile is a Complex Input -2016-05-02 14:47:09 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:47:09 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:47:09 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:47:09 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Catch at Age Matrix (Number of Fish caught by year and for each age) -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:CAAFile -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=CAAFile, description=Catch at Age Matrix (Number of Fish caught by year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:47:09 DEBUG WPS2SM:316 - Conversion to SM Type->PCAAFile is a Complex Input -2016-05-02 14:47:09 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:47:09 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:47:09 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:47:09 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PCAAFile -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=PCAAFile, description=Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:47:09 DEBUG WPS2SM:316 - Conversion to SM Type->CPUEFile is a Complex Input -2016-05-02 14:47:09 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:47:09 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:47:09 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:47:09 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Table of Catch Per Unit of Effort used in the stock assessment -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:CPUEFile -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=CPUEFile, description=Table of Catch Per Unit of Effort used in the stock assessment [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:47:09 DEBUG WPS2SM:316 - Conversion to SM Type->PwaaFile is a Complex Input -2016-05-02 14:47:09 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:47:09 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:47:09 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:47:09 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Partial weight at age (Weight of Fish caught by gear and year and for each age) -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PwaaFile -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=PwaaFile, description=Partial weight at age (Weight of Fish caught by gear and year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:47:09 DEBUG WPS2SM:316 - Conversion to SM Type->waaFile is a Complex Input -2016-05-02 14:47:09 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:47:09 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:47:09 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:47:09 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Fecundity at age (Fecundity of Fish caught by year and for each age) -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:waaFile -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=waaFile, description=Fecundity at age (Fecundity of Fish caught by year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:47:09 DEBUG WPS2SM:291 - Conversion to SM Type->shortComment is a Literal Input -2016-05-02 14:47:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:09 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:47:09 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Free text for users to describe the current simulation -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:shortComment -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=shortComment, description=Free text for users to describe the current simulation [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 14:47:09 DEBUG WPS2SM:291 - Conversion to SM Type->nCPUE is a Literal Input -2016-05-02 14:47:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:09 DEBUG WPS2SM:100 - Guessed default value: 7 -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Number of Catch Per Unit of Effort Time series to use -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:nCPUE -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=7, value=null, name=nCPUE, description=Number of Catch Per Unit of Effort Time series to use [Min N. of Entries:1; Max N. of Entries:1; default:7], typology=OBJECT] -2016-05-02 14:47:09 DEBUG WPS2SM:291 - Conversion to SM Type->CPUE_cut is a Literal Input -2016-05-02 14:47:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:09 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Identifier of the Catch Per Unit of Effort Time Serie to be shrunk -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:CPUE_cut -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=CPUE_cut, description=Identifier of the Catch Per Unit of Effort Time Serie to be shrunk [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 14:47:09 DEBUG WPS2SM:291 - Conversion to SM Type->n_remove_year is a Literal Input -2016-05-02 14:47:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:09 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Number of the (last) years to be removed -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:n_remove_year -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=n_remove_year, description=Number of the (last) years to be removed [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 14:47:09 DEBUG WPS2SM:291 - Conversion to SM Type->age_plus_group is a Literal Input -2016-05-02 14:47:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:09 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:47:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Maximal age class of catches to be taken into account -2016-05-02 14:47:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:age_plus_group -2016-05-02 14:47:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=age_plus_group, description=Maximal age class of catches to be taken into account [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:47:09 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.Integer, defaultValue=1950, value=null, name=StartYear, description=First year of the dataset temporal extent [Min N. of Entries:1; Max N. of Entries:1; default:1950], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=2013, value=null, name=EndYear, description=Last year of the dataset temporal extent [Min N. of Entries:1; Max N. of Entries:1; default:2013], typology=OBJECT], ListParameter [type=java.lang.String, value=null, separator=|, name=CAAFile, description=Catch at Age Matrix (Number of Fish caught by year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=PCAAFile, description=Partial Catch at Age Matrix (Number of Fish caught by gear and year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=CPUEFile, description=Table of Catch Per Unit of Effort used in the stock assessment [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=PwaaFile, description=Partial weight at age (Weight of Fish caught by gear and year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=waaFile, description=Fecundity at age (Fecundity of Fish caught by year and for each age) [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=shortComment, description=Free text for users to describe the current simulation [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=7, value=null, name=nCPUE, description=Number of Catch Per Unit of Effort Time series to use [Min N. of Entries:1; Max N. of Entries:1; default:7], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=CPUE_cut, description=Identifier of the Catch Per Unit of Effort Time Serie to be shrunk [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=n_remove_year, description=Number of the (last) years to be removed [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=age_plus_group, description=Maximal age class of catches to be taken into account [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT]] -2016-05-02 14:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:47:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:47:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:47:21 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION -2016-05-02 14:47:21 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:47:21 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:47:21 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION - SGVM_INTERPOLATION - An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare - - - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - - - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - - - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - - - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - - - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - - - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - - - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - - - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - - - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - - - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - - - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - - - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:47:21 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - -2016-05-02 14:47:21 DEBUG SClient4WPS:300 - WPSClient->Input: - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - -2016-05-02 14:47:21 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:47:21 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:47:21 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:47:21 DEBUG WPS2SM:316 - Conversion to SM Type->InputFile is a Complex Input -2016-05-02 14:47:21 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:47:21 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:47:21 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:47:21 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Input file in TACSAT format. E.g. http://goo.gl/i16kPw -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:InputFile -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=InputFile, description=Input file in TACSAT format. E.g. http://goo.gl/i16kPw [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->npoints is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The number of pings or positions required between each real or actual vessel position or ping -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:npoints -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->interval is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 120 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Average time in minutes between two adjacent datapoints -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:interval -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->margin is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Maximum deviation from specified interval to find adjacent datapoints (tolerance) -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:margin -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->res is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 100 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Number of points to use to create interpolation (including start and end point) -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:res -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->method is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: cHs -2016-05-02 14:47:21 DEBUG WPS2SM:302 - ValueType[]:[cHs, SL] -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Set to cHs for cubic Hermite spline or SL for Straight Line interpolation -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:method -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->fm is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The FM parameter in cubic interpolation -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:fm -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->distscale is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 20 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The DistScale parameter for cubic interpolation -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:distscale -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->sigline is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The Sigline parameter in cubic interpolation -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:sigline -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->minspeedThr is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A filter on the minimum speed to take into account for interpolation -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:minspeedThr -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->maxspeedThr is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 6 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A filter on the maximum speed to take into account for interpolation -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:maxspeedThr -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->headingAdjustment is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:headingAdjustment -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:47:21 DEBUG WPS2SM:291 - Conversion to SM Type->equalDist is a Literal Input -2016-05-02 14:47:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:47:21 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:47:21 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 14:47:21 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:47:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Whether the number of positions returned should be equally spaced or not -2016-05-02 14:47:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:equalDist -2016-05-02 14:47:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:47:21 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 14:47:21 DEBUG SClient4WPS:657 - Parameters: [ListParameter [type=java.lang.String, value=null, separator=|, name=InputFile, description=Input file in TACSAT format. E.g. http://goo.gl/i16kPw [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT], Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM]] -2016-05-02 14:48:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:48:00 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:48:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:48:37 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM -2016-05-02 14:48:37 DEBUG WPS2SM:316 - Conversion to SM Type->RawTaxaNamesTable is a Complex Input -2016-05-02 14:48:37 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:48:37 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:48:37 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:48:37 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:RawTaxaNamesTable -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=RawTaxaNamesTable, description=Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->RawNamesColumn is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: rawnames -2016-05-02 14:48:37 DEBUG WPS2SM:129 - Machter title: The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames] -2016-05-02 14:48:37 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 14:48:37 DEBUG WPS2SM:131 - Machter group: the name of a column from RawTaxaNamesTable -2016-05-02 14:48:37 DEBUG WPS2SM:132 - Machter start: 80 -2016-05-02 14:48:37 DEBUG WPS2SM:133 - Machter end: 123 -2016-05-02 14:48:37 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 14:48:37 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: RawTaxaNamesTable -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:RawNamesColumn -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: bionout -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Name of the table which will contain the matches -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableLabel -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Taxa_Authority_File is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: FISHBASE -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[ASFIS, FISHBASE, OBIS, OBIS_ANIMALIA, OBIS_CNIDARIA, OBIS_ECHINODERMATA, OBIS_PLATYHELMINTHES, COL_FULL, COL_CHORDATA, COL_MAMMALIA, IRMNG_ACTINOPTERYGII, WORMS_ANIMALIA, WORMS_PISCES] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The reference dataset to use -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Taxa_Authority_File -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Parser_Name is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: SIMPLE -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[SIMPLE, GNI, NONE] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The Species - Authority parser -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Parser_Name -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Activate_Preparsing_Processing is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Use preparsing rules to correct common errors -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Activate_Preparsing_Processing -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Use_Stemmed_Genus_and_Species is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: false -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Process using Genus and Species names without declension -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Use_Stemmed_Genus_and_Species -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Accuracy_vs_Speed is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: MAX_ACCURACY -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[MAX_ACCURACY, LOW_SPEED, MEDIUM_SPEED, HIGH_SPEED, MAX_SPEED] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Accuracy_vs_Speed -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_1 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: GSAy -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_1 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_1 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_1 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_1 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_1 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_2 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: FUZZYMATCH -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_2 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_2 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 0.6 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_2 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_2 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_2 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_3 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: LEVENSHTEIN -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_3 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_3 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_3 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_3 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_3 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_4 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: TRIGRAM -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_4 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_4 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 0.4 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_4 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_4 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_4 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Matcher_5 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: NONE -2016-05-02 14:48:37 DEBUG WPS2SM:302 - ValueType[]:[GSAy, FUZZYMATCH, LEVENSHTEIN, SOUNDEX, LEV_SDX_TRIG, TRIGRAM, NONE] -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Choose a Matcher (Optional) -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Matcher_5 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->Threshold_5 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Threshold (def. 0.2) -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Threshold_5 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-02 14:48:37 DEBUG WPS2SM:291 - Conversion to SM Type->MaxResults_5 is a Literal Input -2016-05-02 14:48:37 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:48:37 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 14:48:37 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 14:48:37 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The maximum number of matching candidates per each raw input species -2016-05-02 14:48:37 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxResults_5 -2016-05-02 14:48:37 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:48:37 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 14:48:37 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=RawTaxaNamesTable, description=Input table containing raw taxa names that you want to match [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=RawNamesColumn, description=The column containing the raw taxa names with or without authoship information [the name of a column from RawTaxaNamesTable] [Min N. of Entries:1; Max N. of Entries:1; default:rawnames], typology=COLUMN], ObjectParameter [type=java.lang.String, defaultValue=bionout, value=null, name=OutputTableLabel, description=Name of the table which will contain the matches [Min N. of Entries:1; Max N. of Entries:1; default:bionout], typology=OBJECT], Parameter [name=Taxa_Authority_File, description=The reference dataset to use [Min N. of Entries:1; Max N. of Entries:1; default:FISHBASE], typology=ENUM], Parameter [name=Parser_Name, description=The Species - Authority parser [Min N. of Entries:1; Max N. of Entries:1; default:SIMPLE], typology=ENUM], Parameter [name=Activate_Preparsing_Processing, description=Use preparsing rules to correct common errors [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM], Parameter [name=Use_Stemmed_Genus_and_Species, description=Process using Genus and Species names without declension [Min N. of Entries:1; Max N. of Entries:1; default:false], typology=ENUM], Parameter [name=Accuracy_vs_Speed, description=A trade-off between recognition speed and accuracy. Max speed corresponds to search for strings with the same length only. [Min N. of Entries:1; Max N. of Entries:1; default:MAX_ACCURACY], typology=ENUM], Parameter [name=Matcher_1, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:GSAy], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_1, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_1, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_2, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:FUZZYMATCH], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.6, value=null, name=Threshold_2, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=MaxResults_2, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Matcher_3, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:LEVENSHTEIN], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_3, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_3, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_4, description=Choose a Matcher [Min N. of Entries:1; Max N. of Entries:1; default:TRIGRAM], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.4, value=null, name=Threshold_4, description=Threshold [Min N. of Entries:1; Max N. of Entries:1; default:0.4], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=MaxResults_4, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], Parameter [name=Matcher_5, description=Choose a Matcher (Optional) [Min N. of Entries:1; Max N. of Entries:1; default:NONE], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=Threshold_5, description=Threshold (def. 0.2) [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=MaxResults_5, description=The maximum number of matching candidates per each raw input species [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:48:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:48:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:48:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:48:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:48:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:48:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:48:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:48:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:48:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:48:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:48:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:48:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:48:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:48:37 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:48:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:48:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:48:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:48:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:48:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:48:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:48:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:48:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:48:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:48:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:48:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:48:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:48:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:48:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:48:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:48:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:48:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:48:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:48:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:48:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:48:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:48:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:48:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:48:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:48:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:48:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:48:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:48:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:48:37 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:48:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:48:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:48:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:48:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:48:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:48:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:48:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:48:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 185 msc 0 sec -2016-05-02 14:48:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:48:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:48:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:48:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:48:53 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 14:48:53 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:48:53 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:48:54 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:48:54 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:48:54 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:48:54 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 14:48:54 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:48:54 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:48:54 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:48:54 DEBUG WPS2SM:316 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 14:48:54 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:48:54 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:48:54 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:48:54 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:48:54 ERROR WPS2SM:336 - Unclosed character class near index 75 -[a sequence of http links separated by (\p{ASCII}) , each indicating a table - ^ -2016-05-02 14:48:54 ERROR SClient4WPS:662 - Unclosed character class near index 75 -[a sequence of http links separated by (\p{ASCII}) , each indicating a table - ^ -2016-05-02 14:48:54 ERROR DataMinerManagerServiceImpl:135 - Error retrieving parameters: Unclosed character class near index 75 -[a sequence of http links separated by (\p{ASCII}) , each indicating a table - ^ -2016-05-02 14:48:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 14:48:55 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 14:49:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:49:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:50:58 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 14:50:58 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 14:50:58 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 14:50:58 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 14:50:59 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 14:50:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:50:59 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 14:50:59 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@42ac0bfa -2016-05-02 14:50:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:50:59 INFO ASLSession:352 - Logging the entrance -2016-05-02 14:50:59 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 14:50:59 DEBUG TemplateModel:83 - 2016-05-02 14:50:59, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 14:50:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:50:59 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 14:51:01 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 14:51:01 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 14:51:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:51:01 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 14:51:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:01 INFO ASLSession:352 - Logging the entrance -2016-05-02 14:51:01 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 14:51:01 DEBUG TemplateModel:83 - 2016-05-02 14:51:01, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 14:51:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:51:01 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 14:51:01 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 132 ms -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 14:51:01 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 14:51:01 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 14:51:01 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:51:01 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 14:51:01 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@ebb47a -2016-05-02 14:51:01 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3a68191d -2016-05-02 14:51:01 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5966b967 -2016-05-02 14:51:01 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@156c4d8d -2016-05-02 14:51:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 122 ms -2016-05-02 14:51:01 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 14:51:01 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 14:51:01 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 14:51:01 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 14:51:01 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 14:51:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:01 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:51:01 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 14:51:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-02 14:51:01 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 14:51:01 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:51:01 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 14:51:01 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:51:02 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 14:51:02 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 14:51:02 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 14:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:51:02 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:51:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:51:02 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 14:51:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:02 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 14:51:02 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 14:51:02 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 14:51:02 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 14:51:02 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 14:51:02 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 14:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 14:51:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:51:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 14:51:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 25 ms -2016-05-02 14:51:02 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 14:51:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:51:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:02 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 14:51:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:02 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 14:51:02 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:51:02 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 14:51:03 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 14:51:03 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 14:51:03 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 14:51:03 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 14:51:03 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 14:51:03 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:03 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 14:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 14:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 14:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 14:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 14:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 14:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 14:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 14:51:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:05 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 14:51:05 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 14:51:05 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:05 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 14:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:51:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:51:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:05 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 14:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:05 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 14:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:05 INFO WorkspaceExplorerServiceImpl:188 - end time - 122 msc 0 sec -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:51:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:51:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:05 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 14:51:05 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 14:51:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:05 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:51:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:51:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 14:51:05 INFO WorkspaceExplorerServiceImpl:188 - end time - 133 msc 0 sec -2016-05-02 14:51:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 33 ms -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 14:51:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:51:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 14:51:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 14:51:05 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 14:51:05 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 14:51:05 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 14:51:05 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 14:51:05 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 14:51:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 14:51:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 14:51:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 14:51:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:51:05 INFO WorkspaceExplorerServiceImpl:188 - end time - 354 msc 0 sec -2016-05-02 14:51:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:51:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:51:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:51:09 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 14:51:09 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:51:09 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 14:51:10 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 14:51:10 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 14:51:10 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 14:51:10 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 14:51:10 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 14:51:10 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 14:51:10 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 14:51:10 DEBUG WPS2SM:316 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 14:51:10 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 14:51:10 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 14:51:10 DEBUG WPS2SM:204 - Schema: null -2016-05-02 14:51:10 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 14:51:10 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:51:10 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 14:51:10 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 14:51:10 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 14:51:10 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 14:51:10 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 14:51:10 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 14:51:10 DEBUG WPS2SM:327 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 14:51:10 DEBUG WPS2SM:328 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 14:51:10 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:51:10 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 14:51:10 DEBUG WPS2SM:291 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 14:51:10 DEBUG WPS2SM:92 - WPS type: -2016-05-02 14:51:10 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 14:51:10 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 14:51:10 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 14:51:10 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 14:51:10 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 14:51:10 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 14:51:10 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 14:51:10 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 14:51:10 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 14:51:10 DEBUG WPS2SM:327 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 14:51:10 DEBUG WPS2SM:328 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 14:51:10 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 14:51:10 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 14:51:10 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:51:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:51:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:10 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:51:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:51:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:51:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:51:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:51:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:51:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:51:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:51:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:51:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:51:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:51:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:51:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:51:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:51:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:51:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:51:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:51:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 211 msc 0 sec -2016-05-02 14:51:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:51:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:51:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:51:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:51:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:51:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:51:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:51:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:51:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:51:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:51:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:51:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:51:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:51:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:51:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:51:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:51:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:51:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:51:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:51:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:51:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:51:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:51:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:51:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:51:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:51:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:51:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:51:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 218 msc 0 sec -2016-05-02 14:51:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:51:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:51:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:52:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:53:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:53:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:54:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:54:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:55:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:55:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:56:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:56:29 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:56:51 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:56:51 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:56:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:56:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:56:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:56:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:51 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:56:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:56:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:56:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:56:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:56:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:56:51 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 14:56:51 DEBUG ServiceEngine:306 - get() - start -2016-05-02 14:56:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:56:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:56:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:56:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:56:51 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:56:51 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 14:56:51 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 14:56:51 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 14:56:51 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 14:56:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:56:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:56:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:56:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:51 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 14:56:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:51 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 14:56:51 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 14:56:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:56:51 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:56:51 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 14:56:51 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 14:56:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:56:51 DEBUG MongoIO:77 - open mongo connection -2016-05-02 14:56:51 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:56:51 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 14:56:51 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 14:56:51 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 14:56:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 14:56:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 103 msc 0 sec -2016-05-02 14:56:51 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 14:56:51 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 14:56:52 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:52 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:52 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8592156e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@59d85c0e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@b83c937, socketFactory=javax.net.DefaultSocketFactory@790f3fc8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 14:56:52 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 14:56:52 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 14:56:52 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:243262}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1700933, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:52 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 14:56:52 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:52 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:52 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1853738}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1917141, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:52 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2125816}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=917160, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:52 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:52 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1539601}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1364524, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 14:56:52 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1853739}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG command:56 - Command execution completed -2016-05-02 14:56:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG command:56 - Command execution completed -2016-05-02 14:56:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG command:56 - Command execution completed -2016-05-02 14:56:52 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 14:56:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG command:56 - Command execution completed -2016-05-02 14:56:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG command:56 - Command execution completed -2016-05-02 14:56:52 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1853739}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 14:56:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 14:56:53 DEBUG query:56 - Query completed -2016-05-02 14:56:53 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 14:56:53 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2125816} -2016-05-02 14:56:53 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1853739}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 14:56:53 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1539601} -2016-05-02 14:56:53 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:243262} -2016-05-02 14:56:53 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1853739} -2016-05-02 14:56:53 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1853738} -2016-05-02 14:56:53 INFO MongoIO:508 - Mongo has been closed -2016-05-02 14:56:53 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 14:56:53 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 14:56:53 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 14:56:53 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:56:53 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:56:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:56:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:56:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:56:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:53 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:56:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:56:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:56:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:56:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:53 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:56:53 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:56:53 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 14:56:53 DEBUG ServiceEngine:306 - get() - start -2016-05-02 14:56:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:56:53 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:56:53 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 14:56:53 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 14:56:53 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 14:56:53 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 14:56:53 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 14:56:53 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 14:56:53 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 14:56:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:56:53 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:56:53 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 14:56:53 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 14:56:53 DEBUG MongoIO:77 - open mongo connection -2016-05-02 14:56:53 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 14:56:53 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:53 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:53 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:53 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8592156e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@59d85c0e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@b83c937, socketFactory=javax.net.DefaultSocketFactory@790f3fc8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 14:56:53 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 14:56:53 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 14:56:54 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:243263}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1350942, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 14:56:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:54 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2125817}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=861149, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:54 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1853740}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1632455, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:56:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:56:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:56:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:56:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:54 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1539602}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:56:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=4339104, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.3 ms, state=CONNECTED}] -2016-05-02 14:56:54 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:56:54 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1853741}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG command:56 - Command execution completed -2016-05-02 14:56:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG command:56 - Command execution completed -2016-05-02 14:56:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG command:56 - Command execution completed -2016-05-02 14:56:54 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 14:56:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG command:56 - Command execution completed -2016-05-02 14:56:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG command:56 - Command execution completed -2016-05-02 14:56:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1853741}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 14:56:54 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 14:56:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 90 msc 0 sec -2016-05-02 14:56:54 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:56:54 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 14:56:54 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 14:56:54 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 14:56:54 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 14:56:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.3 ms, state=CONNECTED}] -2016-05-02 14:56:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.3 ms, state=CONNECTED}] -2016-05-02 14:56:54 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 14:56:54 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:56:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:56:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:54 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:56:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:56:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:54 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:56:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:56:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:56:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:54 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 14:56:54 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 14:56:54 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 14:56:55 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 14:56:55 DEBUG query:56 - Query completed -2016-05-02 14:56:55 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 14:56:55 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2125817} -2016-05-02 14:56:55 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:243263} -2016-05-02 14:56:55 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1853741}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 14:56:55 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1853741} -2016-05-02 14:56:55 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1539602} -2016-05-02 14:56:55 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1853740} -2016-05-02 14:56:55 INFO MongoIO:508 - Mongo has been closed -2016-05-02 14:56:55 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 14:56:55 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 14:56:55 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 14:56:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:56:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:56:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:56:55 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 14:56:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:55 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 14:56:55 DEBUG ServiceEngine:193 - get() - start -2016-05-02 14:56:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:56:55 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:56:55 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 14:56:55 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 14:56:55 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 14:56:55 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 14:56:55 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 14:56:55 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 14:56:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:56:55 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:56:55 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 14:56:55 DEBUG Operation:173 - get(String) - start -2016-05-02 14:56:55 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 14:56:55 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 14:56:55 DEBUG MongoIO:77 - open mongo connection -2016-05-02 14:56:55 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 14:56:55 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:55 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:55 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:55 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8592156e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@59d85c0e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@b83c937, socketFactory=javax.net.DefaultSocketFactory@790f3fc8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 14:56:55 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 14:56:55 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1853742}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1184272, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 14:56:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:243265}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2125818}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1276488, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1306628, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1539603}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1298881, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1853743}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 14:56:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 14:56:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 14:56:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG query:56 - Query completed -2016-05-02 14:56:56 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 14:56:56 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 14:56:56 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 14:56:56 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG update:56 - Update completed -2016-05-02 14:56:56 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1853743}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG query:56 - Query completed -2016-05-02 14:56:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:56:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:56:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:56:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:56:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:56:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:56:56 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 14:56:56 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 14:56:56 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 14:56:56 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 14:56:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:56:56 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:56:56 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 14:56:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 14:56:56 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 14:56:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 14:56:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 14:56:56 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 14:56:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 14:56:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:56:56 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:56:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 14:56:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 14:56:56 DEBUG MongoIO:77 - open mongo connection -2016-05-02 14:56:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 14:56:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8592156e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@59d85c0e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@b83c937, socketFactory=javax.net.DefaultSocketFactory@790f3fc8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 14:56:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 14:56:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:243266}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1372968, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 14:56:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:56:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1853744}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1219118, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2125819}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=906922, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1539604}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1247667, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:56:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 14:56:56 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1853745}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853745}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853745}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853745}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 14:56:56 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 14:56:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853745}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853745}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG command:56 - Command execution completed -2016-05-02 14:56:56 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 14:56:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1853745}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:56:56 DEBUG query:56 - Query completed -2016-05-02 14:56:56 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 14:56:56 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2125819} -2016-05-02 14:56:56 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:243266} -2016-05-02 14:56:56 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1853745}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 14:56:56 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1853745} -2016-05-02 14:56:56 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1853744} -2016-05-02 14:56:56 INFO MongoIO:508 - Mongo has been closed -2016-05-02 14:56:56 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1539604} -2016-05-02 14:56:56 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 14:56:56 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 14:56:56 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 14:56:56 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 14:56:56 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 14:56:56 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 14:56:56 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 14:56:56 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 14:57:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:57:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:57:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:57:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:57:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:57:01 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:57:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:57:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:01 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 14:57:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:57:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 14:57:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:57:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:57:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:57:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:57:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:57:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:57:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:57:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:57:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:57:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:57:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:57:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:57:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:57:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:57:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:57:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:57:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:57:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:57:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:57:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 14:57:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:57:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 14:57:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 14:57:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 14:57:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 14:57:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 14:57:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:57:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 14:57:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 14:57:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 14:57:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 187 msc 0 sec -2016-05-02 14:57:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 14:57:05 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2125818} -2016-05-02 14:57:05 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1853743}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 14:57:05 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1539603} -2016-05-02 14:57:05 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:243265} -2016-05-02 14:57:05 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1853743} -2016-05-02 14:57:05 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1853742} -2016-05-02 14:57:09 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId a5aca54d-67cf-4838-9025-9ef5bb204ae9 -2016-05-02 14:57:09 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId a5aca54d-67cf-4838-9025-9ef5bb204ae9 -2016-05-02 14:57:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:57:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:57:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:57:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:09 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: a5aca54d-67cf-4838-9025-9ef5bb204ae9 -2016-05-02 14:57:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:57:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 14:57:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 14:57:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:09 INFO JCRServlets:267 - Servlet getItemById a5aca54d-67cf-4838-9025-9ef5bb204ae9 -2016-05-02 14:57:09 INFO JCRServlets:267 - Servlet getItemById a5aca54d-67cf-4838-9025-9ef5bb204ae9 -2016-05-02 14:57:09 INFO JCRServlets:142 - Calling servlet getChildrenById a5aca54d-67cf-4838-9025-9ef5bb204ae9 by giancarlo.panichi -2016-05-02 14:57:09 INFO JCRServlets:267 - Servlet getItemById a5aca54d-67cf-4838-9025-9ef5bb204ae9 -2016-05-02 14:57:09 DEBUG JCRRepository:246 - session of giancarlo.panichi -2016-05-02 14:57:09 INFO WorkspaceExplorerServiceImpl:503 - returning size: 0 -2016-05-02 14:57:10 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:57:10 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:57:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:57:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:57:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:57:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:10 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:57:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:57:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:57:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:57:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:10 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:57:10 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:57:10 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 14:57:10 DEBUG ServiceEngine:306 - get() - start -2016-05-02 14:57:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:57:10 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:57:10 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 14:57:10 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 14:57:10 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 14:57:10 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 14:57:10 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 14:57:10 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 14:57:10 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 14:57:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:57:10 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:57:10 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 14:57:10 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 14:57:10 DEBUG MongoIO:77 - open mongo connection -2016-05-02 14:57:10 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 14:57:10 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:10 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:10 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:10 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8592156e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@59d85c0e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@b83c937, socketFactory=javax.net.DefaultSocketFactory@790f3fc8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 14:57:10 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 14:57:10 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 14:57:10 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:243270}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1363021, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:10 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 14:57:10 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:10 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:10 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2125823}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=892581, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:10 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1853748}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1489096, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:10 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:10 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1539607}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1598940, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:10 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1853749}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1853749}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG command:56 - Command execution completed -2016-05-02 14:57:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1853749}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG command:56 - Command execution completed -2016-05-02 14:57:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1853749}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG command:56 - Command execution completed -2016-05-02 14:57:10 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 14:57:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1853749}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG command:56 - Command execution completed -2016-05-02 14:57:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1853749}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG command:56 - Command execution completed -2016-05-02 14:57:10 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1853749}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:57:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:57:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:57:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:11 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:57:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:57:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:57:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:57:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:11 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:57:11 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 14:57:11 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 14:57:11 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 14:57:11 INFO WorkspaceExplorerServiceImpl:188 - end time - 56 msc 0 sec -2016-05-02 14:57:11 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 14:57:11 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 14:57:11 DEBUG query:56 - Query completed -2016-05-02 14:57:11 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 14:57:11 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2125823} -2016-05-02 14:57:11 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:243270} -2016-05-02 14:57:11 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1539607} -2016-05-02 14:57:11 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1853749}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 14:57:11 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1853749} -2016-05-02 14:57:11 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1853748} -2016-05-02 14:57:11 INFO MongoIO:508 - Mongo has been closed -2016-05-02 14:57:11 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 14:57:11 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 14:57:11 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 14:57:12 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:57:12 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:57:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:57:12 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 14:57:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 14:57:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:12 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:57:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:57:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:57:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:57:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:12 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:57:12 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:57:12 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 14:57:12 DEBUG ServiceEngine:306 - get() - start -2016-05-02 14:57:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:57:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:57:12 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 14:57:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 14:57:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 14:57:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 14:57:12 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 14:57:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 14:57:12 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 14:57:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:57:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:57:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 14:57:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 14:57:12 DEBUG MongoIO:77 - open mongo connection -2016-05-02 14:57:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 14:57:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8592156e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@59d85c0e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@b83c937, socketFactory=javax.net.DefaultSocketFactory@790f3fc8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 14:57:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 14:57:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 14:57:12 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:243272}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1484313, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 14:57:12 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1853751}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1457833, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:12 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2125826}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=932289, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:12 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1539611}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1568494, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:57:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:57:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:57:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:57:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:57:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:57:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:12 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1853752}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1853752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 DEBUG command:56 - Command execution completed -2016-05-02 14:57:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1853752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:12 DEBUG command:56 - Command execution completed -2016-05-02 14:57:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1853752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 DEBUG command:56 - Command execution completed -2016-05-02 14:57:12 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 14:57:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1853752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 DEBUG command:56 - Command execution completed -2016-05-02 14:57:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1853752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 DEBUG command:56 - Command execution completed -2016-05-02 14:57:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1853752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:12 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:57:12 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 14:57:12 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 14:57:12 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 14:57:12 INFO WorkspaceExplorerServiceImpl:188 - end time - 50 msc 0 sec -2016-05-02 14:57:12 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 14:57:12 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 14:57:12 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 14:57:12 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 14:57:12 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 14:57:13 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 14:57:13 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 14:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:57:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:57:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:13 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 14:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:57:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:57:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:13 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 14:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:57:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 14:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 14:57:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:13 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 14:57:13 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 14:57:13 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 14:57:13 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 14:57:13 DEBUG query:56 - Query completed -2016-05-02 14:57:13 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 14:57:13 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2125826} -2016-05-02 14:57:13 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:243272} -2016-05-02 14:57:13 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1539611} -2016-05-02 14:57:13 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1853752}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 14:57:13 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1853752} -2016-05-02 14:57:13 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1853751} -2016-05-02 14:57:13 INFO MongoIO:508 - Mongo has been closed -2016-05-02 14:57:13 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 14:57:13 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 14:57:13 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 14:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 14:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 14:57:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 14:57:14 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-02 14:57:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:14 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 14:57:14 DEBUG ServiceEngine:193 - get() - start -2016-05-02 14:57:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:57:14 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:57:14 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 14:57:14 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 14:57:14 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 14:57:14 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 14:57:14 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 14:57:14 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 14:57:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:57:14 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:57:14 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 14:57:14 DEBUG Operation:173 - get(String) - start -2016-05-02 14:57:14 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 14:57:14 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 14:57:14 DEBUG MongoIO:77 - open mongo connection -2016-05-02 14:57:14 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 14:57:14 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:14 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:14 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:14 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8592156e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@59d85c0e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@b83c937, socketFactory=javax.net.DefaultSocketFactory@790f3fc8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 14:57:14 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 14:57:14 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 14:57:14 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:243273}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1266604, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:14 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 14:57:14 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:14 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:14 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2125827}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=826342, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:14 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1853753}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1338784, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:14 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:14 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1539612}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1603205, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:14 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1853754}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG command:56 - Command execution completed -2016-05-02 14:57:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG command:56 - Command execution completed -2016-05-02 14:57:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG command:56 - Command execution completed -2016-05-02 14:57:14 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 14:57:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG command:56 - Command execution completed -2016-05-02 14:57:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG command:56 - Command execution completed -2016-05-02 14:57:14 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 14:57:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG command:56 - Command execution completed -2016-05-02 14:57:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG command:56 - Command execution completed -2016-05-02 14:57:14 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 14:57:14 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG query:56 - Query completed -2016-05-02 14:57:14 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 14:57:14 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 14:57:14 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 14:57:14 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG update:56 - Update completed -2016-05-02 14:57:14 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1853754}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:14 DEBUG query:56 - Query completed -2016-05-02 14:57:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 14:57:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 14:57:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 14:57:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 14:57:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 14:57:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 14:57:14 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 14:57:15 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-02 14:57:15 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 14:57:15 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 14:57:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:57:15 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:57:15 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 14:57:15 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 14:57:15 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 14:57:15 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 14:57:15 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 14:57:15 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 14:57:15 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 14:57:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 14:57:15 DEBUG BucketCoding:42 - coding name done -2016-05-02 14:57:15 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 14:57:15 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 14:57:15 DEBUG MongoIO:77 - open mongo connection -2016-05-02 14:57:15 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 14:57:15 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:15 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:15 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:15 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@8592156e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@59d85c0e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@b83c937, socketFactory=javax.net.DefaultSocketFactory@790f3fc8, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 14:57:15 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 14:57:15 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 14:57:15 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:243274}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1452475, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:15 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 14:57:15 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:15 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 14:57:15 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1853755}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:15 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2125828}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=947944, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=6238339, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:15 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 14:57:15 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1539613}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1462166, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 14:57:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 14:57:15 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1853756}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1853756}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG command:56 - Command execution completed -2016-05-02 14:57:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1853756}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG command:56 - Command execution completed -2016-05-02 14:57:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1853756}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG command:56 - Command execution completed -2016-05-02 14:57:15 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 14:57:15 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 14:57:15 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1853756}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG command:56 - Command execution completed -2016-05-02 14:57:15 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1853756}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG command:56 - Command execution completed -2016-05-02 14:57:15 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 14:57:15 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1853756}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG query:56 - Query completed -2016-05-02 14:57:15 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 14:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2125828} -2016-05-02 14:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:243274} -2016-05-02 14:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1539613} -2016-05-02 14:57:15 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1853756}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 14:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1853756} -2016-05-02 14:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1853755} -2016-05-02 14:57:15 INFO MongoIO:508 - Mongo has been closed -2016-05-02 14:57:15 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 14:57:15 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 14:57:15 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 14:57:15 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 14:57:15 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 14:57:15 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 14:57:15 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 14:57:15 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 14:57:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 14:57:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 14:57:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 14:57:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 14:57:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 14:57:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 14:57:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 14:57:28 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2125827} -2016-05-02 14:57:28 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1853754}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 14:57:28 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1853754} -2016-05-02 14:57:28 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:243273} -2016-05-02 14:57:28 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1539612} -2016-05-02 14:57:28 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1853753} -2016-05-02 14:58:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:58:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 14:59:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 14:59:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:00:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:00:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:01:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:01:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:01:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:01:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:02:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:02:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:03:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:03:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:05:08 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 15:05:08 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 15:05:08 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 15:05:08 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:05:08 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:05:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:05:08 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:05:08 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@43a4c35b -2016-05-02 15:05:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:05:08 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:05:08 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:05:08 DEBUG TemplateModel:83 - 2016-05-02 15:05:08, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:05:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:05:08 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 15:05:11 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:05:11 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:05:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:05:11 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:05:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:05:11 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:05:11 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:05:11 DEBUG TemplateModel:83 - 2016-05-02 15:05:11, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:05:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:05:11 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:05:11 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 131 ms -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 15:05:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 15:05:11 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 15:05:11 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:05:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:05:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7539f47 -2016-05-02 15:05:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@13f925d2 -2016-05-02 15:05:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@51bae137 -2016-05-02 15:05:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@5285d778 -2016-05-02 15:05:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 130 ms -2016-05-02 15:05:11 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 15:05:11 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 15:05:11 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 15:05:11 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 15:05:11 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 15:05:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:05:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:05:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 15:05:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-02 15:05:11 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 15:05:11 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:05:11 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 15:05:11 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:05:12 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:05:12 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:05:12 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:05:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:05:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:05:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:05:12 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 15:05:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:12 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 15:05:12 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 15:05:12 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 15:05:12 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 15:05:12 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 15:05:12 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 15:05:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 15:05:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:05:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 15:05:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 28 ms -2016-05-02 15:05:12 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 15:05:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:05:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:12 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 15:05:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:12 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 15:05:13 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:05:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:05:13 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 15:05:13 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:05:13 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 15:05:13 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:05:13 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:05:13 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:13 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:05:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 15:05:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:05:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 15:05:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:05:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 15:05:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:05:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 15:05:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:14 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:05:14 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:05:14 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:05:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:05:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:05:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:05:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:14 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 15:05:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:05:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:05:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:15 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 15:05:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:15 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 15:05:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:05:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:05:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:15 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 15:05:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 148 msc 0 sec -2016-05-02 15:05:15 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 15:05:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:15 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:05:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:05:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:05:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 183 msc 0 sec -2016-05-02 15:05:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:05:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:05:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 15:05:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 15:05:15 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 15:05:15 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 15:05:15 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 15:05:15 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:05:15 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:05:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:05:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:05:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:05:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:05:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 427 msc 0 sec -2016-05-02 15:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:05:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:05:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:05:18 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 15:05:18 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:05:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:05:19 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:05:19 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:05:19 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:05:19 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 15:05:19 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:05:19 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:05:19 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:05:19 DEBUG WPS2SM:316 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 15:05:19 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:05:19 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:05:19 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:05:19 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:05:19 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:05:19 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 15:05:19 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 15:05:19 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 15:05:19 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 15:05:19 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 15:05:19 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 15:05:19 DEBUG WPS2SM:327 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:05:19 DEBUG WPS2SM:328 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 15:05:19 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:05:19 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 15:05:19 DEBUG WPS2SM:291 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 15:05:19 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:05:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:05:19 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:05:19 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:05:19 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 15:05:19 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 15:05:19 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 15:05:19 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 15:05:19 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 15:05:19 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 15:05:19 DEBUG WPS2SM:327 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 15:05:19 DEBUG WPS2SM:328 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 15:05:19 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:05:19 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:05:19 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:05:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:05:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:05:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:05:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:05:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:05:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:05:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:05:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:05:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 214 msc 0 sec -2016-05-02 15:05:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:06:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:06:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:10:10 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 15:10:10 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 15:10:10 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 15:10:10 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:10:10 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:10:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:10:10 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:10:10 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@370e8923 -2016-05-02 15:10:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:10:10 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:10:10 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:10:10 DEBUG TemplateModel:83 - 2016-05-02 15:10:10, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:10:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:10:10 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 15:10:12 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:10:12 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:10:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:10:12 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:10:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:12 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:10:12 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:10:12 DEBUG TemplateModel:83 - 2016-05-02 15:10:12, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:10:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:10:12 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:10:12 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 122 ms -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 15:10:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 15:10:12 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 15:10:12 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:10:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:10:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@709dbf39 -2016-05-02 15:10:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3f365dd2 -2016-05-02 15:10:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@7374a497 -2016-05-02 15:10:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@73c6a5a -2016-05-02 15:10:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 125 ms -2016-05-02 15:10:13 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 15:10:13 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 15:10:13 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 15:10:13 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 15:10:13 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 15:10:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:10:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 15:10:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-02 15:10:13 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 15:10:13 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:10:13 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 15:10:13 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:10:13 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:10:13 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:10:13 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:10:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:10:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:10:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:10:13 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 15:10:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:13 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 15:10:13 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 15:10:13 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 15:10:13 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 15:10:13 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 15:10:13 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 15:10:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 15:10:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:10:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 15:10:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 19 ms -2016-05-02 15:10:13 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 15:10:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:10:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:13 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 15:10:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:13 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 15:10:13 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:10:14 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:10:14 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 15:10:14 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:10:14 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:10:14 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:14 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:10:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 15:10:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:14 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:10:14 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 15:10:14 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:10:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 15:10:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:14 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:10:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 15:10:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:14 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:10:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 15:10:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:15 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:10:15 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:10:15 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:10:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:10:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:15 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 15:10:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:10:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:15 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 15:10:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:15 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 15:10:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 123 msc 0 sec -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:16 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:16 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 15:10:16 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 15:10:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:16 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 15:10:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 122 msc 0 sec -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:10:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:10:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:10:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:10:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 15:10:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 64 ms -2016-05-02 15:10:16 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 15:10:16 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 15:10:16 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 15:10:16 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:10:16 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:10:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:10:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:10:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:10:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 427 msc 0 sec -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:10:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:10:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:10:21 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 15:10:21 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:10:21 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:10:21 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:10:21 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:10:21 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:10:21 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 15:10:21 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:10:21 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:10:21 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:10:21 DEBUG WPS2SM:316 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 15:10:21 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:10:21 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:10:21 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:10:21 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:10:21 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:10:21 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 15:10:21 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 15:10:21 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 15:10:21 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 15:10:21 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 15:10:21 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 15:10:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:10:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 15:10:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:10:21 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 15:10:21 DEBUG WPS2SM:291 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 15:10:21 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:10:21 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:10:21 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:10:21 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:10:21 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 15:10:21 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 15:10:21 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 15:10:21 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 15:10:21 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 15:10:21 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 15:10:21 DEBUG WPS2SM:327 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 15:10:21 DEBUG WPS2SM:328 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 15:10:21 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:10:21 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:10:21 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:10:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:10:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:10:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:10:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:10:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:10:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:10:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:10:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:10:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:10:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:10:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:10:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:10:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:10:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 219 msc 0 sec -2016-05-02 15:10:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:10:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:10:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:10:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:10:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:10:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:24 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:10:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:10:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:25 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:25 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:10:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:10:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:10:25 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:10:25 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:10:25 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:10:25 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:10:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:10:25 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:10:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:10:25 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:10:25 INFO WorkspaceExplorerServiceImpl:142 - end time - 219 msc 0 sec -2016-05-02 15:10:25 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:10:34 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:10:34 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:10:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:10:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:10:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:10:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:34 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:10:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:10:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:10:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:10:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:34 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:10:34 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:10:34 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:10:34 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:10:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:10:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:10:34 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 15:10:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 15:10:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:10:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:10:34 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:10:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:10:34 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:10:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:10:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:10:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:10:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:10:34 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:10:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:10:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@65865940, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7004747, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@234789e8, socketFactory=javax.net.DefaultSocketFactory@2daef070, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:10:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:10:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:10:34 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:243408}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1853890}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1558528, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2196817, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:10:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:34 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:34 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2125961}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1057220, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:34 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1539745}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1542824, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:10:34 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1853891}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG command:56 - Command execution completed -2016-05-02 15:10:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG command:56 - Command execution completed -2016-05-02 15:10:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG command:56 - Command execution completed -2016-05-02 15:10:34 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:10:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG command:56 - Command execution completed -2016-05-02 15:10:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:34 DEBUG command:56 - Command execution completed -2016-05-02 15:10:34 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1853891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:10:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:10:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:10:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:35 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:10:35 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:10:35 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:10:35 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:10:35 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:10:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 54 msc 0 sec -2016-05-02 15:10:35 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:10:35 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:10:35 DEBUG query:56 - Query completed -2016-05-02 15:10:35 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 15:10:35 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2125961} -2016-05-02 15:10:35 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:243408} -2016-05-02 15:10:35 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1853891}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:10:35 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1539745} -2016-05-02 15:10:35 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1853891} -2016-05-02 15:10:35 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1853890} -2016-05-02 15:10:35 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:10:35 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:10:35 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:10:35 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 15:10:36 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:10:36 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:10:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:10:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:10:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:36 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:10:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:36 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:10:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:10:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:10:36 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:10:36 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:10:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:10:36 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:10:36 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 15:10:36 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:10:36 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:10:36 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:10:36 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:10:36 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:10:36 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:10:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:10:36 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:10:36 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:10:36 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:10:36 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:10:36 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:10:36 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:36 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:36 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:36 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@65865940, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7004747, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@234789e8, socketFactory=javax.net.DefaultSocketFactory@2daef070, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:10:36 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:10:36 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:10:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:10:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:10:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:10:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:10:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:36 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:243409}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1318668, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:36 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:10:36 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:36 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:10:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:36 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1853892}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:10:36 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2125962}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1414294, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=8518190, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:36 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=8.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:36 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1539746}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1615102, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=8.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:10:36 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:10:36 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:10:36 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1853893}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG command:56 - Command execution completed -2016-05-02 15:10:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG command:56 - Command execution completed -2016-05-02 15:10:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG command:56 - Command execution completed -2016-05-02 15:10:36 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:10:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG command:56 - Command execution completed -2016-05-02 15:10:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 DEBUG command:56 - Command execution completed -2016-05-02 15:10:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1853893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:36 INFO WorkspaceExplorerServiceImpl:188 - end time - 50 msc 0 sec -2016-05-02 15:10:36 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:10:36 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:10:37 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:10:37 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:10:37 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:10:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=8.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:10:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=8.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:10:37 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:10:37 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:10:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:37 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:10:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:10:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:37 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:10:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:10:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:10:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:37 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:10:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:10:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:10:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:10:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:37 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:10:37 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:10:37 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:10:37 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 15:10:37 DEBUG query:56 - Query completed -2016-05-02 15:10:37 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 15:10:37 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2125962} -2016-05-02 15:10:38 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:243409} -2016-05-02 15:10:38 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1539746} -2016-05-02 15:10:38 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1853893}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:10:38 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1853893} -2016-05-02 15:10:38 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:10:38 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:10:38 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:10:38 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 15:10:38 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1853892} -2016-05-02 15:10:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:10:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:10:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:10:38 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 15:10:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:38 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:10:38 DEBUG ServiceEngine:193 - get() - start -2016-05-02 15:10:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:10:38 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:10:38 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:10:38 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:10:38 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:10:38 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:10:38 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 15:10:38 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:10:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:10:38 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:10:38 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:10:38 DEBUG Operation:173 - get(String) - start -2016-05-02 15:10:38 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:10:38 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:10:38 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:10:38 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:10:38 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:38 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:38 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:38 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@65865940, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7004747, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@234789e8, socketFactory=javax.net.DefaultSocketFactory@2daef070, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:10:38 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:10:38 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:10:38 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1853894}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1302391, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:38 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:10:38 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:38 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:38 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:243411}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2301166, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:38 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2125963}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1111933, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:38 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1539748}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1330640, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:10:38 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1853895}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG command:56 - Command execution completed -2016-05-02 15:10:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG command:56 - Command execution completed -2016-05-02 15:10:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG command:56 - Command execution completed -2016-05-02 15:10:38 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:10:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG command:56 - Command execution completed -2016-05-02 15:10:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG command:56 - Command execution completed -2016-05-02 15:10:38 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:10:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG command:56 - Command execution completed -2016-05-02 15:10:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG command:56 - Command execution completed -2016-05-02 15:10:38 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:10:38 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:38 DEBUG query:56 - Query completed -2016-05-02 15:10:38 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:10:38 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:10:38 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 15:10:38 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG update:56 - Update completed -2016-05-02 15:10:39 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1853895}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG query:56 - Query completed -2016-05-02 15:10:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:10:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:10:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:10:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:10:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:10:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:10:39 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:10:39 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 15:10:39 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 15:10:39 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 15:10:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:10:39 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:10:39 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:10:39 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:10:39 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 15:10:39 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:10:39 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 15:10:39 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 15:10:39 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:10:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:10:39 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:10:39 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:10:39 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:10:39 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:10:39 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:10:39 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:39 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:39 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:39 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@65865940, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7004747, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@234789e8, socketFactory=javax.net.DefaultSocketFactory@2daef070, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:10:39 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:10:39 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:10:39 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1853896}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:243412}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1288970, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:39 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:10:39 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:39 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:10:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1498786, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:39 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:39 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2125964}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=881876, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:10:39 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1539749}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1527857, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:10:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:10:39 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1853897}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG command:56 - Command execution completed -2016-05-02 15:10:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG command:56 - Command execution completed -2016-05-02 15:10:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG command:56 - Command execution completed -2016-05-02 15:10:39 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:10:39 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:10:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG command:56 - Command execution completed -2016-05-02 15:10:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG command:56 - Command execution completed -2016-05-02 15:10:39 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:10:39 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1853897}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:39 DEBUG query:56 - Query completed -2016-05-02 15:10:39 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2125964} -2016-05-02 15:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:243412} -2016-05-02 15:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1539749} -2016-05-02 15:10:39 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1853897}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1853897} -2016-05-02 15:10:39 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1853896} -2016-05-02 15:10:39 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:10:39 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:10:39 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:10:39 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:10:39 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 15:10:39 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:10:39 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:10:39 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:10:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:10:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:10:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:10:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:10:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:10:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:10:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:10:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:10:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:10:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:10:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:10:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:11:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:11:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:11:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:11:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:11:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:11:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:11:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:11:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:11:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:11:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:11:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:11:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:11:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:11:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:11:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:11:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:11:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:11:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:11:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:11:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:11:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:11:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:11:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:11:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:11:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:11:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:11:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:11:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:11:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:11:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:11:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:11:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:11:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:11:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:11:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:12:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:12:00 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:12:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:12:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:12:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:12:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:12:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:12:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:12:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:12:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:12:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:12:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:12:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:12:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:12:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:12:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:12:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:12:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 15:12:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:12:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:12:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 15:12:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:12:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 15:12:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 15:12:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:12:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:12:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:12:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:12:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:12:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:12:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:12:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:12:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:12:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:12:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:12:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:12:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:12:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:12:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:12:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:12:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:12:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:12:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:12:55 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:12:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:12:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:12:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:12:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:12:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:12:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:12:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:12:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:17:17 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 15:17:17 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 15:17:17 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 15:17:17 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:17:17 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:17:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:17:17 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:17:17 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@891e5fd -2016-05-02 15:17:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:17 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:17:17 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:17:17 DEBUG TemplateModel:83 - 2016-05-02 15:17:17, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:17:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:17:17 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 15:17:20 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:17:20 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:17:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:17:20 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:17:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:17:20 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:17:20 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:17:20 DEBUG TemplateModel:83 - 2016-05-02 15:17:20, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:17:20 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:17:20 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:17:20 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 120 ms -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 15:17:20 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 15:17:20 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 15:17:21 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:17:21 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:17:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@4810de56 -2016-05-02 15:17:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@35fc01da -2016-05-02 15:17:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@64f16cfd -2016-05-02 15:17:21 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@29d8fea8 -2016-05-02 15:17:21 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 222 ms -2016-05-02 15:17:21 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 15:17:21 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 15:17:21 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 15:17:21 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 15:17:21 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 15:17:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:17:21 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:17:21 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 15:17:21 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-02 15:17:21 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 15:17:21 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:17:21 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 15:17:21 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:17:21 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:17:21 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:17:21 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:17:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:17:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:17:21 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 15:17:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:22 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 15:17:22 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 15:17:22 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 15:17:22 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 15:17:22 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 15:17:22 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 15:17:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:17:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:17:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 15:17:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 15:17:22 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:17:22 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 15:17:22 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 15:17:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:22 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 15:17:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:22 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 15:17:22 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:17:23 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:17:23 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 15:17:23 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:17:23 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:17:23 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:23 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 15:17:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:23 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 15:17:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:23 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 15:17:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:23 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 15:17:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:25 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:17:25 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:17:25 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:25 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 15:17:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:25 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 15:17:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:25 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 15:17:25 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 15:17:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 205 msc 0 sec -2016-05-02 15:17:25 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 15:17:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:25 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:17:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:17:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 149 msc 0 sec -2016-05-02 15:17:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 15:17:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:17:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 15:17:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 20 ms -2016-05-02 15:17:25 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 15:17:25 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 15:17:25 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 15:17:25 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 15:17:25 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 15:17:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 15:17:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:17:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:17:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 15:17:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 15:17:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 15:17:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 15:17:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:26 INFO WorkspaceExplorerServiceImpl:188 - end time - 357 msc 0 sec -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:17:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:17:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:17:31 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 15:17:31 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:17:31 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:17:31 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:17:31 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:17:31 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:17:31 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 15:17:31 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:17:31 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:17:31 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:17:31 DEBUG WPS2SM:316 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 15:17:31 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:17:31 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:17:31 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:17:31 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:17:31 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:17:31 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 15:17:31 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 15:17:31 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 15:17:31 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 15:17:31 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 15:17:31 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 15:17:31 DEBUG WPS2SM:327 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:17:31 DEBUG WPS2SM:328 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 15:17:31 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:17:31 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 15:17:31 DEBUG WPS2SM:291 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 15:17:31 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:17:31 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:17:31 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:17:31 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:17:31 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 15:17:31 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 15:17:31 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 15:17:31 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 15:17:31 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 15:17:31 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 15:17:31 DEBUG WPS2SM:327 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 15:17:31 DEBUG WPS2SM:328 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 15:17:31 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:17:31 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:17:31 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:17:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:17:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:17:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:31 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:17:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:17:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:17:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:17:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:17:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:17:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:17:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:17:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:17:31 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:17:32 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:17:32 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:17:32 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:17:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:17:32 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:17:32 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:17:32 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:17:32 INFO WorkspaceExplorerServiceImpl:142 - end time - 243 msc 0 sec -2016-05-02 15:17:32 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:17:41 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:17:41 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:17:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:17:41 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:17:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:17:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:41 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:17:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:17:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:17:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:17:41 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:17:41 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:17:41 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:17:41 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:17:41 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 15:17:41 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 15:17:41 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:17:41 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:17:41 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:17:41 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:17:41 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:17:41 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:17:41 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:17:41 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:17:41 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:17:41 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:17:41 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:17:41 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:41 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:42 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:42 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fb91ed8c, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@3de95916, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@22d7d31b, socketFactory=javax.net.DefaultSocketFactory@764a37c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:17:42 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:17:42 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:17:42 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:243483}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1853969}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1433747, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1360645, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:42 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:17:42 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:42 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:42 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:42 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126035}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1075792, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:42 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1539820}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1637469, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:17:42 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1853970}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853970}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG command:56 - Command execution completed -2016-05-02 15:17:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853970}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG command:56 - Command execution completed -2016-05-02 15:17:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853970}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG command:56 - Command execution completed -2016-05-02 15:17:42 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:17:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853970}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG command:56 - Command execution completed -2016-05-02 15:17:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1853970}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG command:56 - Command execution completed -2016-05-02 15:17:42 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1853970}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:17:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:17:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:42 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:17:42 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:17:42 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:17:42 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:17:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:17:42 INFO WorkspaceExplorerServiceImpl:188 - end time - 50 msc 0 sec -2016-05-02 15:17:42 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:17:42 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:17:43 DEBUG query:56 - Query completed -2016-05-02 15:17:43 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 15:17:43 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126035} -2016-05-02 15:17:43 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:243483} -2016-05-02 15:17:43 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1539820} -2016-05-02 15:17:43 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1853970}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:17:43 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1853970} -2016-05-02 15:17:43 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1853969} -2016-05-02 15:17:43 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:17:43 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:17:43 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:17:43 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 15:17:43 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:17:43 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:17:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:17:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:17:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:17:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:43 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:17:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:17:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:43 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:17:43 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:17:43 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:17:43 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:17:43 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:17:43 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:17:43 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 15:17:43 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:17:43 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:17:43 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:17:43 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:17:43 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:17:43 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:17:43 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:17:43 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:17:43 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:17:43 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:17:43 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:17:43 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:17:43 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:43 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:43 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:43 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fb91ed8c, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@3de95916, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@22d7d31b, socketFactory=javax.net.DefaultSocketFactory@764a37c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:17:43 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:17:43 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:17:43 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:243484}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1853971}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1496733, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:43 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:17:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1530578, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:43 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:43 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:43 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:43 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126039}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1303132, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:43 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1539823}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3072942, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:17:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:43 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}] -2016-05-02 15:17:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:17:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:17:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:43 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1853972}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853972}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 DEBUG command:56 - Command execution completed -2016-05-02 15:17:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853972}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 DEBUG command:56 - Command execution completed -2016-05-02 15:17:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853972}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 DEBUG command:56 - Command execution completed -2016-05-02 15:17:43 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:17:43 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853972}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:43 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:17:43 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:17:43 DEBUG command:56 - Command execution completed -2016-05-02 15:17:43 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1853972}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:44 DEBUG command:56 - Command execution completed -2016-05-02 15:17:44 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1853972}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:44 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:17:44 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:17:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 82 msc 0 sec -2016-05-02 15:17:44 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:17:44 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:17:44 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:17:44 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:17:44 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:17:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:17:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}] -2016-05-02 15:17:44 DEBUG query:56 - Query completed -2016-05-02 15:17:44 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 15:17:44 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126039} -2016-05-02 15:17:44 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:243484} -2016-05-02 15:17:44 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1853972}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:17:44 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1539823} -2016-05-02 15:17:44 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1853972} -2016-05-02 15:17:44 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:17:44 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:17:44 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:17:44 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 15:17:44 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1853971} -2016-05-02 15:17:44 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:17:44 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:17:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:17:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:17:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:44 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:17:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:17:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:17:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:17:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:44 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:17:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:17:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:17:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:44 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:17:44 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:17:44 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:17:44 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 15:17:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:17:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:17:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:17:45 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 15:17:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:45 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:17:45 DEBUG ServiceEngine:193 - get() - start -2016-05-02 15:17:45 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:17:45 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:17:45 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:17:45 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:17:45 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:17:45 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:17:45 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 15:17:45 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:17:45 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:17:45 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:17:45 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:17:45 DEBUG Operation:173 - get(String) - start -2016-05-02 15:17:45 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:17:45 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:17:45 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:17:45 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:17:45 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:45 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:45 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:45 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fb91ed8c, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@3de95916, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@22d7d31b, socketFactory=javax.net.DefaultSocketFactory@764a37c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:17:45 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:17:45 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:17:45 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:243485}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1512099, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:45 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:17:45 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:45 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:45 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1853973}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126040}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1734285, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:45 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=884395, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:45 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1539825}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1427107, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 15:17:45 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1853974}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG command:56 - Command execution completed -2016-05-02 15:17:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG command:56 - Command execution completed -2016-05-02 15:17:45 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG command:56 - Command execution completed -2016-05-02 15:17:45 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:17:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG command:56 - Command execution completed -2016-05-02 15:17:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG command:56 - Command execution completed -2016-05-02 15:17:45 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:17:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG command:56 - Command execution completed -2016-05-02 15:17:45 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG command:56 - Command execution completed -2016-05-02 15:17:45 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:17:45 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:45 DEBUG query:56 - Query completed -2016-05-02 15:17:45 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:17:45 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:17:45 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 15:17:45 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG update:56 - Update completed -2016-05-02 15:17:46 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1853974}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG query:56 - Query completed -2016-05-02 15:17:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:17:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:17:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:17:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:17:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:17:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:17:46 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:17:46 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 15:17:46 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 15:17:46 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 15:17:46 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:17:46 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:17:46 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:17:46 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:17:46 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 15:17:46 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:17:46 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 15:17:46 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 15:17:46 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:17:46 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:17:46 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:17:46 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:17:46 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:17:46 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:17:46 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:17:46 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:46 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:46 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:46 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fb91ed8c, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@3de95916, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@22d7d31b, socketFactory=javax.net.DefaultSocketFactory@764a37c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:17:46 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:17:46 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:17:46 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:243486}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1853975}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1330697, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:46 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:17:46 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:46 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:17:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1289496, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:46 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:46 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126041}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=835902, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:17:46 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1539826}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1913482, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:17:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:17:46 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1853976}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853976}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG command:56 - Command execution completed -2016-05-02 15:17:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853976}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG command:56 - Command execution completed -2016-05-02 15:17:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853976}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG command:56 - Command execution completed -2016-05-02 15:17:46 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:17:46 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:17:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853976}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG command:56 - Command execution completed -2016-05-02 15:17:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1853976}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG command:56 - Command execution completed -2016-05-02 15:17:46 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:17:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1853976}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:17:46 DEBUG query:56 - Query completed -2016-05-02 15:17:46 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126041} -2016-05-02 15:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:243486} -2016-05-02 15:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1539826} -2016-05-02 15:17:46 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1853976}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1853976} -2016-05-02 15:17:46 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1853975} -2016-05-02 15:17:46 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:17:46 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:17:46 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:17:46 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:17:46 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:17:46 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 15:17:46 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:17:46 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:17:46 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:17:53 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2126040} -2016-05-02 15:17:53 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:243485} -2016-05-02 15:17:53 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1539825} -2016-05-02 15:17:53 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1853974}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:17:53 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1853974} -2016-05-02 15:17:53 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1853973} -2016-05-02 15:18:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:18:12 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:19:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:19:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:20:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:20:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:20:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:20:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:21:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:21:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:22:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:22:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:22:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:22:08 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING -2016-05-02 15:22:08 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:22:08 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:22:09 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING - MAX_ENT_NICHE_MODELLING - A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt - - - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - maxent_ - - - - SpeciesName - The name of the species to model and the occurrence records refer to - Name of the parameter: SpeciesName. The name of the species to model and the occurrence records refer to - - - - generic_species - - - - MaxIterations - The number of learning iterations of the MaxEnt algorithm - Name of the parameter: MaxIterations. The number of learning iterations of the MaxEnt algorithm - - - - 1000 - - - - DefaultPrevalence - A priori probability of presence at ordinary occurrence points - Name of the parameter: DefaultPrevalence. A priori probability of presence at ordinary occurrence points - - - - 0.5 - - - - OccurrencesTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrencesTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - LongitudeColumn - The column containing longitude values [the name of a column from OccurrencesTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrencesTable] - - - - decimallongitude - - - - LatitudeColumn - The column containing latitude values [the name of a column from OccurrencesTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrencesTable] - - - - decimallatitude - - - - XResolution - Model projection resolution on the X axis in decimal degrees - Name of the parameter: XResolution. Model projection resolution on the X axis in decimal degrees - - - - 1 - - - - YResolution - Model projection resolution on the Y axis in decimal degrees - Name of the parameter: YResolution. Model projection resolution on the Y axis in decimal degrees - - - - 1 - - - - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - - - - - - - Z - Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - - - TimeIndex - Time Index. The default is the first time indexed in the input environmental datasets - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed in the input environmental datasets - - - - 0 - - - - - - Best Threshold - Best threshold for transforming MaxEnt values into 0/1 probability assignments - Name of the parameter: Best Threshold. Best threshold for transforming MaxEnt values into 0/1 probability assignments - - - - - - Estimated Prevalence - The a posteriori estimated prevalence of the species - Name of the parameter: Estimated Prevalence. The a posteriori estimated prevalence of the species - - - - - - Variables contributions - The contribution of each variable to the MaxEnt values estimates - Name of the parameter: Variables contributions. The contribution of each variable to the MaxEnt values estimates - - - - - - Variables Permutations Importance - The importance of the permutations of the variables during the training - Name of the parameter: Variables Permutations Importance. The importance of the permutations of the variables during the training - - - - - - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - Name of the parameter: ASCII Maps of the environmental layers for checking features aligments. ASCII Maps of the environmental layers for checking features aligments - - - - application/d4science - - - - - application/d4science - - - - - - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable7. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:22:09 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - OutputTableLabel - The name of the table to produce - Name of the parameter: OutputTableLabel. The name of the table to produce - - - - maxent_ - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - SpeciesName - The name of the species to model and the occurrence records refer to - Name of the parameter: SpeciesName. The name of the species to model and the occurrence records refer to - - - - generic_species - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - MaxIterations - The number of learning iterations of the MaxEnt algorithm - Name of the parameter: MaxIterations. The number of learning iterations of the MaxEnt algorithm - - - - 1000 - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - DefaultPrevalence - A priori probability of presence at ordinary occurrence points - Name of the parameter: DefaultPrevalence. A priori probability of presence at ordinary occurrence points - - - - 0.5 - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencesTable - A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - Name of the parameter: OccurrencesTable. A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - LongitudeColumn - The column containing longitude values [the name of a column from OccurrencesTable] - Name of the parameter: LongitudeColumn. The column containing longitude values [the name of a column from OccurrencesTable] - - - - decimallongitude - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - LatitudeColumn - The column containing latitude values [the name of a column from OccurrencesTable] - Name of the parameter: LatitudeColumn. The column containing latitude values [the name of a column from OccurrencesTable] - - - - decimallatitude - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - XResolution - Model projection resolution on the X axis in decimal degrees - Name of the parameter: XResolution. Model projection resolution on the X axis in decimal degrees - - - - 1 - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - YResolution - Model projection resolution on the Y axis in decimal degrees - Name of the parameter: YResolution. Model projection resolution on the Y axis in decimal degrees - - - - 1 - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - Layers - The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - Name of the parameter: Layers. The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - Z - Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - Name of the parameter: Z. Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer - - - - 0 - - -2016-05-02 15:22:09 DEBUG SClient4WPS:300 - WPSClient->Input: - TimeIndex - Time Index. The default is the first time indexed in the input environmental datasets - Name of the parameter: TimeIndex. Time Index. The default is the first time indexed in the input environmental datasets - - - - 0 - - -2016-05-02 15:22:09 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:22:09 DEBUG SClient4WPS:307 - WPSClient->Output: - Best Threshold - Best threshold for transforming MaxEnt values into 0/1 probability assignments - Name of the parameter: Best Threshold. Best threshold for transforming MaxEnt values into 0/1 probability assignments - - - - -2016-05-02 15:22:09 DEBUG SClient4WPS:307 - WPSClient->Output: - Estimated Prevalence - The a posteriori estimated prevalence of the species - Name of the parameter: Estimated Prevalence. The a posteriori estimated prevalence of the species - - - - -2016-05-02 15:22:09 DEBUG SClient4WPS:307 - WPSClient->Output: - Variables contributions - The contribution of each variable to the MaxEnt values estimates - Name of the parameter: Variables contributions. The contribution of each variable to the MaxEnt values estimates - - - - -2016-05-02 15:22:09 DEBUG SClient4WPS:307 - WPSClient->Output: - Variables Permutations Importance - The importance of the permutations of the variables during the training - Name of the parameter: Variables Permutations Importance. The importance of the permutations of the variables during the training - - - - -2016-05-02 15:22:09 DEBUG SClient4WPS:307 - WPSClient->Output: - ASCII Maps of the environmental layers for checking features aligments - ASCII Maps of the environmental layers for checking features aligments - Name of the parameter: ASCII Maps of the environmental layers for checking features aligments. ASCII Maps of the environmental layers for checking features aligments - - - - application/d4science - - - - - application/d4science - - - - -2016-05-02 15:22:09 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable7 - Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OutputTable7. Output table [a http link to a table in UTF-8 ecoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 15:22:09 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:22:09 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->OutputTableLabel is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: maxent_ -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the table to produce -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OutputTableLabel -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->SpeciesName is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: generic_species -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The name of the species to model and the occurrence records refer to -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:SpeciesName -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->MaxIterations is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: 1000 -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The number of learning iterations of the MaxEnt algorithm -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:MaxIterations -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->DefaultPrevalence is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A priori probability of presence at ordinary occurrence points -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:DefaultPrevalence -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 15:22:09 DEBUG WPS2SM:316 - Conversion to SM Type->OccurrencesTable is a Complex Input -2016-05-02 15:22:09 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:22:09 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:22:09 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:22:09 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrencesTable -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencesTable, description=A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->LongitudeColumn is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: decimallongitude -2016-05-02 15:22:09 DEBUG WPS2SM:129 - Machter title: The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude] -2016-05-02 15:22:09 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 15:22:09 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-02 15:22:09 DEBUG WPS2SM:132 - Machter start: 40 -2016-05-02 15:22:09 DEBUG WPS2SM:133 - Machter end: 82 -2016-05-02 15:22:09 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 15:22:09 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing longitude values [the name of a column from OccurrencesTable] -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:LongitudeColumn -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->LatitudeColumn is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: decimallatitude -2016-05-02 15:22:09 DEBUG WPS2SM:129 - Machter title: The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude] -2016-05-02 15:22:09 DEBUG WPS2SM:130 - Machter find: true -2016-05-02 15:22:09 DEBUG WPS2SM:131 - Machter group: the name of a column from OccurrencesTable -2016-05-02 15:22:09 DEBUG WPS2SM:132 - Machter start: 39 -2016-05-02 15:22:09 DEBUG WPS2SM:133 - Machter end: 81 -2016-05-02 15:22:09 DEBUG WPS2SM:134 - Machter Group Count: 1 -2016-05-02 15:22:09 DEBUG WPS2SM:137 - Matcher referredTabularParameterName: OccurrencesTable -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The column containing latitude values [the name of a column from OccurrencesTable] -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:LatitudeColumn -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->XResolution is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Model projection resolution on the X axis in decimal degrees -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:XResolution -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->YResolution is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Model projection resolution on the Y axis in decimal degrees -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:YResolution -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->Layers is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:22:09 DEBUG WPS2SM:148 - Machter title: The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:22:09 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 15:22:09 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 15:22:09 DEBUG WPS2SM:151 - Machter start: 501 -2016-05-02 15:22:09 DEBUG WPS2SM:152 - Machter end: 536 -2016-05-02 15:22:09 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 15:22:09 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Layers -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->Z is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Z -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 15:22:09 DEBUG WPS2SM:291 - Conversion to SM Type->TimeIndex is a Literal Input -2016-05-02 15:22:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:09 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:22:09 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 15:22:09 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Time Index. The default is the first time indexed in the input environmental datasets -2016-05-02 15:22:09 DEBUG WPS2SM:328 - Conversion to SM Type->Name:TimeIndex -2016-05-02 15:22:09 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:09 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 15:22:09 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue=maxent_, value=null, name=OutputTableLabel, description=The name of the table to produce [Min N. of Entries:1; Max N. of Entries:1; default:maxent_], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue=generic_species, value=null, name=SpeciesName, description=The name of the species to model and the occurrence records refer to [Min N. of Entries:1; Max N. of Entries:1; default:generic_species], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1000, value=null, name=MaxIterations, description=The number of learning iterations of the MaxEnt algorithm [Min N. of Entries:1; Max N. of Entries:1; default:1000], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=DefaultPrevalence, description=A priori probability of presence at ordinary occurrence points [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], TabularParameter [tableName= , templates=[], name=OccurrencesTable, description=A geospatial table containing occurrence records, following the template of the Species Products Discovery datasets [a http link to a table in UTF-8 encoding following this template: (OCCURRENCE_SPECIES) http://goo.gl/4ExuR5] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=LongitudeColumn, description=The column containing longitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallongitude], typology=COLUMN], Parameter [name=LatitudeColumn, description=The column containing latitude values [the name of a column from OccurrencesTable] [Min N. of Entries:1; Max N. of Entries:1; default:decimallatitude], typology=COLUMN], ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=XResolution, description=Model projection resolution on the X axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=1, value=null, name=YResolution, description=Model projection resolution on the Y axis in decimal degrees [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT], ListParameter [type=java.lang.String, value=null, separator=|, name=Layers, description=The list of environmental layers to use for enriching the points. Each entry is a layer Title or UUID or HTTP link. E.g. the title or the UUID (preferred) of a layer indexed in the e-Infrastructure on GeoNetwork - You can retrieve it from GeoExplorer. Otherwise you can supply the direct HTTP link of the layer. The format will be guessed from the link. The default is GeoTiff. Supports several standards (NETCDF, WFS, WCS, ASC, GeoTiff ). E.g. https://dl.dropboxusercontent.com/u/12809149/wind1.tif [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.Double, defaultValue=0, value=null, name=Z, description=Value of Z. Default is 0, that means environmental layers processing will be at surface level or at the first avaliable Z value in the layer [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=TimeIndex, description=Time Index. The default is the first time indexed in the input environmental datasets [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT]] -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:22:09 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:22:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:22:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:22:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:22:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:22:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:22:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:22:09 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:22:09 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:22:09 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:22:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:22:09 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:22:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:22:09 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:22:09 INFO WorkspaceExplorerServiceImpl:142 - end time - 190 msc 0 sec -2016-05-02 15:22:09 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:22:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:22:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:22:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:22:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:22:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:22:53 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS -2016-05-02 15:22:53 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:22:53 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:22:54 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS - GENERIC_CHARTS - An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities. - - - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - TopElementsNumber - Max number of elements, with highest values, to visualize - Name of the parameter: TopElementsNumber. Max number of elements, with highest values, to visualize - - - - 10 - - - - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - - - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:22:54 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:22:54 DEBUG SClient4WPS:300 - WPSClient->Input: - InputTable - The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: InputTable. The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:22:54 DEBUG SClient4WPS:300 - WPSClient->Input: - TopElementsNumber - Max number of elements, with highest values, to visualize - Name of the parameter: TopElementsNumber. Max number of elements, with highest values, to visualize - - - - 10 - - -2016-05-02 15:22:54 DEBUG SClient4WPS:300 - WPSClient->Input: - Attributes - The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Attributes. The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-02 15:22:54 DEBUG SClient4WPS:300 - WPSClient->Input: - Quantities - The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - Name of the parameter: Quantities. The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] - - - - - -2016-05-02 15:22:54 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:22:54 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:22:54 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:22:54 DEBUG WPS2SM:316 - Conversion to SM Type->InputTable is a Complex Input -2016-05-02 15:22:54 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:22:54 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:22:54 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:22:54 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:22:54 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 15:22:54 DEBUG WPS2SM:328 - Conversion to SM Type->Name:InputTable -2016-05-02 15:22:54 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:54 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=InputTable, description=The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 15:22:54 DEBUG WPS2SM:291 - Conversion to SM Type->TopElementsNumber is a Literal Input -2016-05-02 15:22:54 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:54 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:22:54 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 15:22:54 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Max number of elements, with highest values, to visualize -2016-05-02 15:22:54 DEBUG WPS2SM:328 - Conversion to SM Type->Name:TopElementsNumber -2016-05-02 15:22:54 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:54 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 15:22:54 DEBUG WPS2SM:291 - Conversion to SM Type->Attributes is a Literal Input -2016-05-02 15:22:54 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:54 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:22:54 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:22:54 DEBUG WPS2SM:110 - Machter title: The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:22:54 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 15:22:54 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-02 15:22:54 DEBUG WPS2SM:113 - Machter start: 42 -2016-05-02 15:22:54 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-02 15:22:54 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 15:22:54 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-02 15:22:54 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 15:22:54 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] -2016-05-02 15:22:54 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Attributes -2016-05-02 15:22:54 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:54 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 15:22:54 DEBUG WPS2SM:291 - Conversion to SM Type->Quantities is a Literal Input -2016-05-02 15:22:54 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:22:54 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:22:54 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:22:54 DEBUG WPS2SM:110 - Machter title: The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:22:54 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 15:22:54 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from InputTable separated by | -2016-05-02 15:22:54 DEBUG WPS2SM:113 - Machter start: 38 -2016-05-02 15:22:54 DEBUG WPS2SM:114 - Machter end: 99 -2016-05-02 15:22:54 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 15:22:54 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: InputTable -2016-05-02 15:22:54 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 15:22:54 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] -2016-05-02 15:22:54 DEBUG WPS2SM:328 - Conversion to SM Type->Name:Quantities -2016-05-02 15:22:54 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:22:54 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 15:22:54 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=InputTable, description=The input table [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=TopElementsNumber, description=Max number of elements, with highest values, to visualize [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], Parameter [name=Attributes, description=The dimensions to consider in the charts [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], Parameter [name=Quantities, description=The numeric quantities to visualize [a sequence of names of columns from InputTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:22:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:22:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:22:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:22:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:22:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:22:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:22:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:22:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:22:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:22:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:22:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:22:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:22:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:22:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:22:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:22:54 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:22:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:22:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:22:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:22:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:22:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:22:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:22:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:22:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:22:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:22:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:22:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:22:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:22:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:22:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:22:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:22:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:22:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:22:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:22:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:22:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:22:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:22:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:22:54 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:22:54 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:22:54 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:22:54 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:22:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:22:54 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:22:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:22:54 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:22:54 INFO WorkspaceExplorerServiceImpl:142 - end time - 225 msc 0 sec -2016-05-02 15:22:54 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:23:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:23:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:23:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:23:06 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY -2016-05-02 15:23:06 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:23:06 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:23:06 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY - CMSY - An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner. - - - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - - - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - - - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:23:06 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:23:06 DEBUG SClient4WPS:300 - WPSClient->Input: - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - -2016-05-02 15:23:06 DEBUG SClient4WPS:300 - WPSClient->Input: - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - -2016-05-02 15:23:06 DEBUG SClient4WPS:300 - WPSClient->Input: - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - -2016-05-02 15:23:06 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:23:06 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:23:06 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:23:06 DEBUG WPS2SM:291 - Conversion to SM Type->IDsFile is a Literal Input -2016-05-02 15:23:06 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:23:06 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:23:06 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:23:06 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK -2016-05-02 15:23:06 DEBUG WPS2SM:328 - Conversion to SM Type->Name:IDsFile -2016-05-02 15:23:06 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:23:06 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 15:23:06 DEBUG WPS2SM:291 - Conversion to SM Type->StocksFile is a Literal Input -2016-05-02 15:23:06 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:23:06 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:23:06 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:23:06 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY -2016-05-02 15:23:06 DEBUG WPS2SM:328 - Conversion to SM Type->Name:StocksFile -2016-05-02 15:23:06 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:23:06 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 15:23:06 DEBUG WPS2SM:291 - Conversion to SM Type->SelectedStock is a Literal Input -2016-05-02 15:23:06 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:23:06 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:23:06 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:23:06 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The stock on which the procedure has to focus e.g. HLH_M07 -2016-05-02 15:23:06 DEBUG WPS2SM:328 - Conversion to SM Type->Name:SelectedStock -2016-05-02 15:23:06 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:23:06 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 15:23:06 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT]] -2016-05-02 15:23:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:23:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:23:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:23:39 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN -2016-05-02 15:23:39 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:23:39 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:23:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:23:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:23:45 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN - DBSCAN - A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - - - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:23:45 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:23:45 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:23:45 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-02 15:23:45 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-02 15:23:45 DEBUG SClient4WPS:300 - WPSClient->Input: - epsilon - DBScan epsilon parameter - Name of the parameter: epsilon. DBScan epsilon parameter - - - - 10 - - -2016-05-02 15:23:45 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - DBScan minimum points parameter (identifies outliers) - Name of the parameter: min_points. DBScan minimum points parameter (identifies outliers) - - - - 1 - - -2016-05-02 15:23:45 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:23:45 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 15:23:45 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:23:45 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:23:45 DEBUG WPS2SM:316 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-02 15:23:45 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:23:45 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:23:45 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:23:45 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:23:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 15:23:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-02 15:23:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:23:45 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 15:23:45 DEBUG WPS2SM:291 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-02 15:23:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:23:45 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:23:45 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:23:45 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:23:45 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 15:23:45 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-02 15:23:45 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-02 15:23:45 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-02 15:23:45 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 15:23:45 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-02 15:23:45 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 15:23:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-02 15:23:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-02 15:23:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:23:45 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 15:23:45 DEBUG WPS2SM:291 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-02 15:23:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:23:45 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:23:45 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-02 15:23:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-02 15:23:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-02 15:23:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:23:45 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-02 15:23:45 DEBUG WPS2SM:291 - Conversion to SM Type->epsilon is a Literal Input -2016-05-02 15:23:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:23:45 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:23:45 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 15:23:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:DBScan epsilon parameter -2016-05-02 15:23:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:epsilon -2016-05-02 15:23:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:23:45 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 15:23:45 DEBUG WPS2SM:291 - Conversion to SM Type->min_points is a Literal Input -2016-05-02 15:23:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:23:45 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:23:45 DEBUG WPS2SM:100 - Guessed default value: 1 -2016-05-02 15:23:45 DEBUG WPS2SM:327 - Conversion to SM Type->Title:DBScan minimum points parameter (identifies outliers) -2016-05-02 15:23:45 DEBUG WPS2SM:328 - Conversion to SM Type->Name:min_points -2016-05-02 15:23:45 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:23:45 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT] -2016-05-02 15:23:45 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=epsilon, description=DBScan epsilon parameter [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=1, value=null, name=min_points, description=DBScan minimum points parameter (identifies outliers) [Min N. of Entries:1; Max N. of Entries:1; default:1], typology=OBJECT]] -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:23:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:23:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:23:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:23:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:23:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:23:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:23:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:23:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:23:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:23:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:23:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:23:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:23:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:23:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:23:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:23:45 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:23:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:23:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:23:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:23:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:23:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:23:45 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:23:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:23:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:23:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:23:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:23:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:23:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:23:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:23:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:23:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:23:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:23:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:23:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:23:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:23:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:23:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:23:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:23:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:23:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:23:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:23:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:23:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:23:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:23:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:23:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:23:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:23:45 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:23:45 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:23:45 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:23:45 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:23:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:23:45 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:23:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:23:45 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:23:45 INFO WorkspaceExplorerServiceImpl:142 - end time - 194 msc 0 sec -2016-05-02 15:23:45 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:23:53 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:23:53 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:23:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:23:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:23:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:23:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:23:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:23:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:23:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:23:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:23:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:23:53 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:23:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:23:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:23:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:23:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:23:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:23:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:23:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:23:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:23:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:23:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:23:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:23:53 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:23:53 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:23:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:23:53 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:23:53 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 15:23:53 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 15:23:53 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:23:53 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:23:53 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:23:53 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:23:53 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:23:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:23:53 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:23:53 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:23:53 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:23:53 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:23:53 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:23:53 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:23:53 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:23:53 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:23:53 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fb91ed8c, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@3de95916, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@22d7d31b, socketFactory=javax.net.DefaultSocketFactory@764a37c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:23:53 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:23:53 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:23:53 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1854052}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:243554}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1502679, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:23:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1112599, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:23:53 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:23:53 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:23:53 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:23:53 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:23:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:23:53 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2126108}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=844835, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:23:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:23:53 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1539893}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1336027, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:23:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:23:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:23:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:23:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:23:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:23:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:23:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:23:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:23:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:23:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:23:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:23:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:23:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:23:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:23:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:23:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:23:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:23:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:23:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:23:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:23:53 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1854053}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854053}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:23:53 DEBUG command:56 - Command execution completed -2016-05-02 15:23:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854053}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG command:56 - Command execution completed -2016-05-02 15:23:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854053}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG command:56 - Command execution completed -2016-05-02 15:23:53 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:23:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854053}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG command:56 - Command execution completed -2016-05-02 15:23:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854053}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 DEBUG command:56 - Command execution completed -2016-05-02 15:23:53 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1854053}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:23:53 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:23:53 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:23:53 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:23:53 INFO WorkspaceExplorerServiceImpl:188 - end time - 55 msc 0 sec -2016-05-02 15:23:53 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:23:53 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:23:54 DEBUG query:56 - Query completed -2016-05-02 15:23:54 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 15:23:54 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2126108} -2016-05-02 15:23:54 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:243554} -2016-05-02 15:23:54 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1539893} -2016-05-02 15:23:54 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1854053}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:23:54 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1854053} -2016-05-02 15:23:54 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:23:54 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:23:54 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:23:54 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 15:23:54 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1854052} -2016-05-02 15:24:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:24:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:24:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:24:06 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS -2016-05-02 15:24:06 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:24:06 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:24:07 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS - KMEANS - A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed. - - - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - - - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - - - k - expected Number of Clusters - Name of the parameter: k. expected Number of Clusters - - - - 3 - - - - max_runs - max runs of the clustering procedure - Name of the parameter: max_runs. max runs of the clustering procedure - - - - 10 - - - - max_optimization_steps - max number of internal optimization steps - Name of the parameter: max_optimization_steps. max number of internal optimization steps - - - - 5 - - - - min_points - number of points which define an outlier set - Name of the parameter: min_points. number of points which define an outlier set - - - - 2 - - - - - - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:24:07 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:24:07 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsTable - Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - Name of the parameter: OccurrencePointsTable. Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:24:07 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumnNames - column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - Name of the parameter: FeaturesColumnNames. column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] - - - - - -2016-05-02 15:24:07 DEBUG SClient4WPS:300 - WPSClient->Input: - OccurrencePointsClusterLabel - table name of the resulting distribution - Name of the parameter: OccurrencePointsClusterLabel. table name of the resulting distribution - - - - OccCluster_ - - -2016-05-02 15:24:07 DEBUG SClient4WPS:300 - WPSClient->Input: - k - expected Number of Clusters - Name of the parameter: k. expected Number of Clusters - - - - 3 - - -2016-05-02 15:24:07 DEBUG SClient4WPS:300 - WPSClient->Input: - max_runs - max runs of the clustering procedure - Name of the parameter: max_runs. max runs of the clustering procedure - - - - 10 - - -2016-05-02 15:24:07 DEBUG SClient4WPS:300 - WPSClient->Input: - max_optimization_steps - max number of internal optimization steps - Name of the parameter: max_optimization_steps. max number of internal optimization steps - - - - 5 - - -2016-05-02 15:24:07 DEBUG SClient4WPS:300 - WPSClient->Input: - min_points - number of points which define an outlier set - Name of the parameter: min_points. number of points which define an outlier set - - - - 2 - - -2016-05-02 15:24:07 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:24:07 DEBUG SClient4WPS:307 - WPSClient->Output: - OutputTable - Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - Name of the parameter: OutputTable. Output cluster table [a http link to a table in UTF-8 ecoding following this template: (CLUSTER) http://goo.gl/PnKhhb] - - - - text/csv - - - - - text/csv - - - - -2016-05-02 15:24:07 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:24:07 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:24:07 DEBUG WPS2SM:316 - Conversion to SM Type->OccurrencePointsTable is a Complex Input -2016-05-02 15:24:07 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:24:07 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:24:07 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:24:07 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:24:07 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] -2016-05-02 15:24:07 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrencePointsTable -2016-05-02 15:24:07 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:24:07 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 15:24:07 DEBUG WPS2SM:291 - Conversion to SM Type->FeaturesColumnNames is a Literal Input -2016-05-02 15:24:07 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:24:07 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:24:07 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:24:07 DEBUG WPS2SM:110 - Machter title: column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:24:07 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 15:24:07 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from OccurrencePointsTable separated by | -2016-05-02 15:24:07 DEBUG WPS2SM:113 - Machter start: 31 -2016-05-02 15:24:07 DEBUG WPS2SM:114 - Machter end: 103 -2016-05-02 15:24:07 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 15:24:07 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: OccurrencePointsTable -2016-05-02 15:24:07 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 15:24:07 DEBUG WPS2SM:327 - Conversion to SM Type->Title:column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] -2016-05-02 15:24:07 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FeaturesColumnNames -2016-05-02 15:24:07 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:24:07 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 15:24:07 DEBUG WPS2SM:291 - Conversion to SM Type->OccurrencePointsClusterLabel is a Literal Input -2016-05-02 15:24:07 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:24:07 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:24:07 DEBUG WPS2SM:100 - Guessed default value: OccCluster_ -2016-05-02 15:24:07 DEBUG WPS2SM:327 - Conversion to SM Type->Title:table name of the resulting distribution -2016-05-02 15:24:07 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OccurrencePointsClusterLabel -2016-05-02 15:24:07 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:24:07 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT] -2016-05-02 15:24:07 DEBUG WPS2SM:291 - Conversion to SM Type->k is a Literal Input -2016-05-02 15:24:07 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:24:07 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:24:07 DEBUG WPS2SM:100 - Guessed default value: 3 -2016-05-02 15:24:07 DEBUG WPS2SM:327 - Conversion to SM Type->Title:expected Number of Clusters -2016-05-02 15:24:07 DEBUG WPS2SM:328 - Conversion to SM Type->Name:k -2016-05-02 15:24:07 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:24:07 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT] -2016-05-02 15:24:07 DEBUG WPS2SM:291 - Conversion to SM Type->max_runs is a Literal Input -2016-05-02 15:24:07 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:24:07 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:24:07 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 15:24:07 DEBUG WPS2SM:327 - Conversion to SM Type->Title:max runs of the clustering procedure -2016-05-02 15:24:07 DEBUG WPS2SM:328 - Conversion to SM Type->Name:max_runs -2016-05-02 15:24:07 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:24:07 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 15:24:07 DEBUG WPS2SM:291 - Conversion to SM Type->max_optimization_steps is a Literal Input -2016-05-02 15:24:07 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:24:07 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:24:07 DEBUG WPS2SM:100 - Guessed default value: 5 -2016-05-02 15:24:07 DEBUG WPS2SM:327 - Conversion to SM Type->Title:max number of internal optimization steps -2016-05-02 15:24:07 DEBUG WPS2SM:328 - Conversion to SM Type->Name:max_optimization_steps -2016-05-02 15:24:07 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:24:07 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT] -2016-05-02 15:24:07 DEBUG WPS2SM:291 - Conversion to SM Type->min_points is a Literal Input -2016-05-02 15:24:07 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:24:07 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:24:07 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-02 15:24:07 DEBUG WPS2SM:327 - Conversion to SM Type->Title:number of points which define an outlier set -2016-05-02 15:24:07 DEBUG WPS2SM:328 - Conversion to SM Type->Name:min_points -2016-05-02 15:24:07 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:24:07 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-02 15:24:07 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=OccurrencePointsTable, description=Occurrence Points Table. Max 4000 points [a http link to a table in UTF-8 encoding following this template: (GENERIC) A generic comma separated csv file in UTF-8 encoding] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumnNames, description=column Names for the features [a sequence of names of columns from OccurrencePointsTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST], ObjectParameter [type=java.lang.String, defaultValue=OccCluster_, value=null, name=OccurrencePointsClusterLabel, description=table name of the resulting distribution [Min N. of Entries:1; Max N. of Entries:1; default:OccCluster_], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=3, value=null, name=k, description=expected Number of Clusters [Min N. of Entries:1; Max N. of Entries:1; default:3], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=max_runs, description=max runs of the clustering procedure [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=5, value=null, name=max_optimization_steps, description=max number of internal optimization steps [Min N. of Entries:1; Max N. of Entries:1; default:5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=2, value=null, name=min_points, description=number of points which define an outlier set [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT]] -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:24:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:24:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:24:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:24:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:24:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:24:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:24:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:24:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:24:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:24:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:24:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:24:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:24:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:24:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:24:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:24:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:24:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:24:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:24:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:24:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:24:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:24:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:24:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:24:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:24:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:24:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:24:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:24:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:24:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:24:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:24:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:24:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:24:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:24:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:24:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:24:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:24:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:24:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:24:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:24:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:24:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:24:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:24:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:24:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:24:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:24:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:24:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:24:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:24:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:24:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:24:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:24:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:24:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:24:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:24:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:24:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 173 msc 0 sec -2016-05-02 15:24:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:24:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:24:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:25:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:25:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:26:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:26:04 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS -2016-05-02 15:26:04 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:26:04 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:26:04 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS - HRS - An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area. - - - ProjectingAreaTable - A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: ProjectingAreaTable. A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - OptionalCondition - optional filter for taking area rows - Name of the parameter: OptionalCondition. optional filter for taking area rows - - - - where oceanarea>0 - - - - PositiveCasesTable - A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: PositiveCasesTable. A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - NegativeCasesTable - A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: NegativeCasesTable. A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - FeaturesColumns - Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] - Name of the parameter: FeaturesColumns. Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:26:04 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:26:04 DEBUG SClient4WPS:300 - WPSClient->Input: - ProjectingAreaTable - A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: ProjectingAreaTable. A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:26:04 DEBUG SClient4WPS:300 - WPSClient->Input: - OptionalCondition - optional filter for taking area rows - Name of the parameter: OptionalCondition. optional filter for taking area rows - - - - where oceanarea>0 - - -2016-05-02 15:26:04 DEBUG SClient4WPS:300 - WPSClient->Input: - PositiveCasesTable - A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: PositiveCasesTable. A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:26:04 DEBUG SClient4WPS:300 - WPSClient->Input: - NegativeCasesTable - A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: NegativeCasesTable. A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:26:04 DEBUG SClient4WPS:300 - WPSClient->Input: - FeaturesColumns - Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] - Name of the parameter: FeaturesColumns. Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] - - - - - -2016-05-02 15:26:04 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:26:04 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:26:04 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:26:04 DEBUG WPS2SM:316 - Conversion to SM Type->ProjectingAreaTable is a Complex Input -2016-05-02 15:26:04 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:26:04 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:26:04 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:26:04 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:26:04 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:26:04 DEBUG WPS2SM:328 - Conversion to SM Type->Name:ProjectingAreaTable -2016-05-02 15:26:04 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:04 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=ProjectingAreaTable, description=A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 15:26:04 DEBUG WPS2SM:291 - Conversion to SM Type->OptionalCondition is a Literal Input -2016-05-02 15:26:04 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:04 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:26:04 DEBUG WPS2SM:100 - Guessed default value: where oceanarea>0 -2016-05-02 15:26:04 DEBUG WPS2SM:327 - Conversion to SM Type->Title:optional filter for taking area rows -2016-05-02 15:26:04 DEBUG WPS2SM:328 - Conversion to SM Type->Name:OptionalCondition -2016-05-02 15:26:04 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:04 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue=where oceanarea>0, value=null, name=OptionalCondition, description=optional filter for taking area rows [Min N. of Entries:1; Max N. of Entries:1; default:where oceanarea>0], typology=OBJECT] -2016-05-02 15:26:04 DEBUG WPS2SM:316 - Conversion to SM Type->PositiveCasesTable is a Complex Input -2016-05-02 15:26:04 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:26:04 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:26:04 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:26:04 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:26:04 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:26:04 DEBUG WPS2SM:328 - Conversion to SM Type->Name:PositiveCasesTable -2016-05-02 15:26:04 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:04 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=PositiveCasesTable, description=A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 15:26:04 DEBUG WPS2SM:316 - Conversion to SM Type->NegativeCasesTable is a Complex Input -2016-05-02 15:26:04 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:26:04 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:26:04 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:26:04 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:26:04 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:26:04 DEBUG WPS2SM:328 - Conversion to SM Type->Name:NegativeCasesTable -2016-05-02 15:26:04 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:04 DEBUG SClient4WPS:653 - InputParameter: TabularParameter [tableName= , templates=[], name=NegativeCasesTable, description=A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR] -2016-05-02 15:26:04 DEBUG WPS2SM:291 - Conversion to SM Type->FeaturesColumns is a Literal Input -2016-05-02 15:26:04 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:04 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:26:04 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:26:04 DEBUG WPS2SM:110 - Machter title: Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:26:04 DEBUG WPS2SM:111 - Machter find: true -2016-05-02 15:26:04 DEBUG WPS2SM:112 - Machter group: a sequence of names of columns from PositiveCasesTable separated by | -2016-05-02 15:26:04 DEBUG WPS2SM:113 - Machter start: 18 -2016-05-02 15:26:04 DEBUG WPS2SM:114 - Machter end: 87 -2016-05-02 15:26:04 DEBUG WPS2SM:115 - Machter Group Count: 2 -2016-05-02 15:26:04 DEBUG WPS2SM:117 - Matcher referredTabularParameterName: PositiveCasesTable -2016-05-02 15:26:04 DEBUG WPS2SM:120 - Matcher separator: | -2016-05-02 15:26:04 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] -2016-05-02 15:26:04 DEBUG WPS2SM:328 - Conversion to SM Type->Name:FeaturesColumns -2016-05-02 15:26:04 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:04 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=FeaturesColumns, description=Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST] -2016-05-02 15:26:04 DEBUG SClient4WPS:657 - Parameters: [TabularParameter [tableName= , templates=[], name=ProjectingAreaTable, description=A Table containing projecting area information [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], ObjectParameter [type=java.lang.String, defaultValue=where oceanarea>0, value=null, name=OptionalCondition, description=optional filter for taking area rows [Min N. of Entries:1; Max N. of Entries:1; default:where oceanarea>0], typology=OBJECT], TabularParameter [tableName= , templates=[], name=PositiveCasesTable, description=A Table containing positive cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], TabularParameter [tableName= , templates=[], name=NegativeCasesTable, description=A Table containing negative cases [a http link to a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR], Parameter [name=FeaturesColumns, description=Features columns [a sequence of names of columns from PositiveCasesTable separated by | ] [Min N. of Entries:1; Max N. of Entries:1], typology=COLUMN_LIST]] -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:26:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 184 msc 0 sec -2016-05-02 15:26:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:26:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:26:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:26:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:26:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:26:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:26:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:26:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:26:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:26:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-02 15:26:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:26:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:26:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 167 msc 0 sec -2016-05-02 15:26:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:26:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:26:12 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:26:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:26:12 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION -2016-05-02 15:26:12 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:26:12 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:26:13 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION - SGVM_INTERPOLATION - An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare - - - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - - - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - - - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - - - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - - - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - - - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - - - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - - - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - - - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - - - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - - - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - - - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:26:13 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - -2016-05-02 15:26:13 DEBUG SClient4WPS:300 - WPSClient->Input: - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - -2016-05-02 15:26:13 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:26:13 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:26:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:26:13 DEBUG WPS2SM:316 - Conversion to SM Type->InputFile is a Complex Input -2016-05-02 15:26:13 DEBUG WPS2SM:322 - Max Megabytes: 1 -2016-05-02 15:26:13 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:26:13 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:26:13 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Input file in TACSAT format. E.g. http://goo.gl/i16kPw -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:InputFile -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=InputFile, description=Input file in TACSAT format. E.g. http://goo.gl/i16kPw [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->npoints is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The number of pings or positions required between each real or actual vessel position or ping -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:npoints -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->interval is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 120 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Average time in minutes between two adjacent datapoints -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:interval -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->margin is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Maximum deviation from specified interval to find adjacent datapoints (tolerance) -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:margin -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->res is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 100 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Number of points to use to create interpolation (including start and end point) -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:res -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->method is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: cHs -2016-05-02 15:26:13 DEBUG WPS2SM:302 - ValueType[]:[cHs, SL] -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Set to cHs for cubic Hermite spline or SL for Straight Line interpolation -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:method -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->fm is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The FM parameter in cubic interpolation -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:fm -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->distscale is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 20 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The DistScale parameter for cubic interpolation -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:distscale -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->sigline is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:The Sigline parameter in cubic interpolation -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:sigline -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->minspeedThr is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A filter on the minimum speed to take into account for interpolation -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:minspeedThr -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->maxspeedThr is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 6 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:A filter on the maximum speed to take into account for interpolation -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:maxspeedThr -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->headingAdjustment is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:headingAdjustment -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 15:26:13 DEBUG WPS2SM:291 - Conversion to SM Type->equalDist is a Literal Input -2016-05-02 15:26:13 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:26:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:26:13 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 15:26:13 DEBUG WPS2SM:302 - ValueType[]:[true, false] -2016-05-02 15:26:13 DEBUG WPS2SM:327 - Conversion to SM Type->Title:Whether the number of positions returned should be equally spaced or not -2016-05-02 15:26:13 DEBUG WPS2SM:328 - Conversion to SM Type->Name:equalDist -2016-05-02 15:26:13 DEBUG WPS2SM:329 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:26:13 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 15:26:13 DEBUG SClient4WPS:657 - Parameters: [ListParameter [type=java.lang.String, value=null, separator=|, name=InputFile, description=Input file in TACSAT format. E.g. http://goo.gl/i16kPw [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=LIST], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT], Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM]] -2016-05-02 15:26:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:26:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:27:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:27:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:28:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:28:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:29:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:29:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:30:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:30:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:31:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:31:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:31:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:32:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:32:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:33:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:33:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:34:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:34:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:35:45 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 15:35:45 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 15:35:45 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 15:35:45 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:35:45 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:35:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:35:45 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:35:45 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@72322539 -2016-05-02 15:35:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:35:45 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:35:45 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:35:45 DEBUG TemplateModel:83 - 2016-05-02 15:35:45, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:35:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:35:45 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 15:35:47 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:35:47 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:35:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:35:47 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:35:47 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:35:47 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:35:47 DEBUG TemplateModel:83 - 2016-05-02 15:35:47, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:35:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:35:47 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:35:47 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 121 ms -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 15:35:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 15:35:47 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 15:35:47 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:35:47 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:35:48 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@4da6317f -2016-05-02 15:35:48 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@78071671 -2016-05-02 15:35:48 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@e0fe7f8 -2016-05-02 15:35:48 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@898a470 -2016-05-02 15:35:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 115 ms -2016-05-02 15:35:48 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 15:35:48 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 15:35:48 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 15:35:48 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 15:35:48 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 15:35:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:35:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:35:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 15:35:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 27 ms -2016-05-02 15:35:48 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 15:35:48 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:35:48 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 15:35:48 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:35:48 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:35:48 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:35:48 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:35:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:35:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:35:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:35:48 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 15:35:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:35:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:35:48 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 15:35:48 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 15:35:48 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 15:35:48 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 15:35:48 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 15:35:48 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 15:35:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 15:35:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:35:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 15:35:49 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:35:49 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 15:35:49 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 1072 ms -2016-05-02 15:35:50 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 15:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:35:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:35:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:35:50 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 15:35:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:35:50 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 15:35:50 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:35:50 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:35:50 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 15:35:50 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:35:50 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:35:50 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 15:35:50 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 15:35:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:35:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:35:50 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 15:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:35:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:35:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:35:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:35:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:35:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:35:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:35:50 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 15:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:35:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:35:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:35:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:35:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:35:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:35:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:35:51 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:35:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 15:35:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:35:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:35:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:35:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:35:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:35:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:35:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:35:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:35:51 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:35:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 15:35:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:35:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:35:51 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:35:51 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:35:51 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:35:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:35:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:35:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:35:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:35:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:35:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:35:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:35:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:35:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:35:51 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 15:35:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:35:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:35:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:35:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:35:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:35:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:35:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:35:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:35:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:35:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:35:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:35:51 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 15:35:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:35:51 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 15:35:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:35:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:35:51 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:35:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:35:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:35:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:35:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:35:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:35:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:35:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:35:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 110 msc 0 sec -2016-05-02 15:35:51 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 15:35:51 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 15:35:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:35:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:35:52 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 15:35:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:35:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:35:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:35:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:35:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 159 msc 0 sec -2016-05-02 15:35:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 15:35:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:35:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:35:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 15:35:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 15:35:52 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 15:35:52 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 15:35:52 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 15:35:52 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 15:35:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:35:52 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 15:35:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:35:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:35:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:35:52 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 15:35:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:35:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:35:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 15:35:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:35:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 361 msc 0 sec -2016-05-02 15:36:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:36:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:36:02 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY -2016-05-02 15:36:02 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:36:02 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:36:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:36:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:36:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:36:02 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY -2016-05-02 15:36:02 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:36:02 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:36:03 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY - CMSY - An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner. - - - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - - - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - - - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:36:03 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:36:03 DEBUG SClient4WPS:300 - WPSClient->Input: - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - -2016-05-02 15:36:03 DEBUG SClient4WPS:300 - WPSClient->Input: - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - -2016-05-02 15:36:03 DEBUG SClient4WPS:300 - WPSClient->Input: - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - -2016-05-02 15:36:03 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:36:03 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:36:03 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:36:03 DEBUG WPS2SM:287 - Conversion to SM Type->IDsFile is a Literal Input -2016-05-02 15:36:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:36:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:36:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK -2016-05-02 15:36:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:IDsFile -2016-05-02 15:36:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 15:36:03 DEBUG WPS2SM:287 - Conversion to SM Type->StocksFile is a Literal Input -2016-05-02 15:36:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:36:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:36:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY -2016-05-02 15:36:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:StocksFile -2016-05-02 15:36:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 15:36:03 DEBUG WPS2SM:287 - Conversion to SM Type->SelectedStock is a Literal Input -2016-05-02 15:36:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:36:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:36:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The stock on which the procedure has to focus e.g. HLH_M07 -2016-05-02 15:36:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:SelectedStock -2016-05-02 15:36:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 15:36:03 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT]] -2016-05-02 15:36:03 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY - CMSY - An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner. - - - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - - - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - - - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:36:03 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:36:03 DEBUG SClient4WPS:300 - WPSClient->Input: - IDsFile - Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - Name of the parameter: IDsFile. Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK - - - - - -2016-05-02 15:36:03 DEBUG SClient4WPS:300 - WPSClient->Input: - StocksFile - Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - Name of the parameter: StocksFile. Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY - - - - - -2016-05-02 15:36:03 DEBUG SClient4WPS:300 - WPSClient->Input: - SelectedStock - The stock on which the procedure has to focus e.g. HLH_M07 - Name of the parameter: SelectedStock. The stock on which the procedure has to focus e.g. HLH_M07 - - - - - -2016-05-02 15:36:03 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:36:03 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:36:03 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:36:03 DEBUG WPS2SM:287 - Conversion to SM Type->IDsFile is a Literal Input -2016-05-02 15:36:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:36:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:36:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK -2016-05-02 15:36:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:IDsFile -2016-05-02 15:36:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 15:36:03 DEBUG WPS2SM:287 - Conversion to SM Type->StocksFile is a Literal Input -2016-05-02 15:36:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:36:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:36:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY -2016-05-02 15:36:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:StocksFile -2016-05-02 15:36:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 15:36:03 DEBUG WPS2SM:287 - Conversion to SM Type->SelectedStock is a Literal Input -2016-05-02 15:36:03 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:36:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:36:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The stock on which the procedure has to focus e.g. HLH_M07 -2016-05-02 15:36:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:SelectedStock -2016-05-02 15:36:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:03 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT] -2016-05-02 15:36:03 DEBUG SClient4WPS:657 - Parameters: [ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=IDsFile, description=Http link to a file containing prior information about the stocks, in WKLife IV format. Example: http://goo.gl/9rg3qK [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=StocksFile, description=Http link to a file containing catch and biomass (or CPUE) trends , in WKLife IV format. Example: http://goo.gl/Mp2ZLY [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT], ObjectParameter [type=java.lang.String, defaultValue= , value=null, name=SelectedStock, description=The stock on which the procedure has to focus e.g. HLH_M07 [Min N. of Entries:1; Max N. of Entries:1], typology=OBJECT]] -2016-05-02 15:36:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:36:17 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:36:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:36:17 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION -2016-05-02 15:36:17 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:36:17 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:36:18 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION - SGVM_INTERPOLATION - An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare - - - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - - - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - - - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - - - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - - - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - - - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - - - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - - - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - - - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - - - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - - - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - - - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:36:18 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - -2016-05-02 15:36:18 DEBUG SClient4WPS:300 - WPSClient->Input: - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - -2016-05-02 15:36:18 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:36:18 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:36:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:36:18 DEBUG WPS2SM:312 - Conversion to SM Type->InputFile is a Complex Input -2016-05-02 15:36:18 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 15:36:18 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:36:18 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:36:18 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Input file in TACSAT format. E.g. http://goo.gl/i16kPw -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:InputFile -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: FileParameter [mimeType=text/xml, value=null, name=InputFile, description=Input file in TACSAT format. E.g. http://goo.gl/i16kPw [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=FILE] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->npoints is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The number of pings or positions required between each real or actual vessel position or ping -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:npoints -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->interval is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 120 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Average time in minutes between two adjacent datapoints -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:interval -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->margin is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Maximum deviation from specified interval to find adjacent datapoints (tolerance) -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:margin -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->res is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 100 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Number of points to use to create interpolation (including start and end point) -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:res -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->method is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: cHs -2016-05-02 15:36:18 DEBUG WPS2SM:298 - ValueType[]:[cHs, SL] -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Set to cHs for cubic Hermite spline or SL for Straight Line interpolation -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:method -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->fm is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The FM parameter in cubic interpolation -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:fm -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->distscale is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 20 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The DistScale parameter for cubic interpolation -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:distscale -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->sigline is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The Sigline parameter in cubic interpolation -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:sigline -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->minspeedThr is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:A filter on the minimum speed to take into account for interpolation -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:minspeedThr -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->maxspeedThr is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 6 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:A filter on the maximum speed to take into account for interpolation -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:maxspeedThr -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->headingAdjustment is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:headingAdjustment -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 15:36:18 DEBUG WPS2SM:287 - Conversion to SM Type->equalDist is a Literal Input -2016-05-02 15:36:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:36:18 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 15:36:18 DEBUG WPS2SM:298 - ValueType[]:[true, false] -2016-05-02 15:36:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Whether the number of positions returned should be equally spaced or not -2016-05-02 15:36:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:equalDist -2016-05-02 15:36:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:18 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 15:36:18 DEBUG SClient4WPS:657 - Parameters: [FileParameter [mimeType=text/xml, value=null, name=InputFile, description=Input file in TACSAT format. E.g. http://goo.gl/i16kPw [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=FILE], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT], Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM]] -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:36:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:36:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:36:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:36:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:36:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:36:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:36:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:36:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:36:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:36:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:36:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:36:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:36:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:36:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:36:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:36:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:36:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 227 msc 0 sec -2016-05-02 15:36:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:36:39 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:39 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:36:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:36:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:36:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:39 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:39 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:36:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:39 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:39 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:39 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:36:39 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:36:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:36:39 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:36:39 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 15:36:39 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 15:36:39 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:36:39 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:36:39 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:36:39 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:36:39 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:36:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:36:39 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:36:39 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:36:39 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:36:39 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:36:39 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:36:39 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:39 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:39 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:39 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c410fadb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@52321a80, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5769f3a8, socketFactory=javax.net.DefaultSocketFactory@6cfbc76d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:36:39 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:36:39 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:36:39 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:243683}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1432244, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:39 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:36:39 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:39 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:39 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1854180}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1327385, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:39 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:39 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126236}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1509154, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:39 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540020}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=4150519, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}] -2016-05-02 15:36:39 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854181}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854181}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG command:56 - Command execution completed -2016-05-02 15:36:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854181}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG command:56 - Command execution completed -2016-05-02 15:36:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854181}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG command:56 - Command execution completed -2016-05-02 15:36:39 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:36:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854181}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG command:56 - Command execution completed -2016-05-02 15:36:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854181}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:39 DEBUG command:56 - Command execution completed -2016-05-02 15:36:39 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854181}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:36:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:36:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:36:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:36:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:36:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:36:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:40 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:36:40 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:36:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:36:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}] -2016-05-02 15:36:40 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:36:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 52 msc 0 sec -2016-05-02 15:36:40 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:36:40 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:36:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:40 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:36:40 DEBUG query:56 - Query completed -2016-05-02 15:36:40 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 15:36:40 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126236} -2016-05-02 15:36:40 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:243683} -2016-05-02 15:36:40 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854181}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:36:40 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540020} -2016-05-02 15:36:40 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854181} -2016-05-02 15:36:40 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1854180} -2016-05-02 15:36:40 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:36:40 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:36:40 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:36:40 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 15:36:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:36:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:36:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:36:47 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 15:36:47 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:36:47 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:36:48 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:36:48 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:36:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:36:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 15:36:48 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:36:48 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:36:48 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:36:48 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 15:36:48 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 15:36:48 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:36:48 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:36:48 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:36:48 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:36:48 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 15:36:48 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 15:36:48 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 15:36:48 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 15:36:48 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 15:36:48 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 15:36:48 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:36:48 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 15:36:48 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:48 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 15:36:48 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 15:36:48 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:36:48 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:36:48 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:36:48 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:36:48 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 15:36:48 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 15:36:48 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 15:36:48 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 15:36:48 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 15:36:48 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 15:36:48 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 15:36:48 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 15:36:48 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:36:48 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:36:48 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:36:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:36:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:48 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:36:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:36:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:36:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:36:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:36:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:36:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:36:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:36:48 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:36:48 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:36:48 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:36:48 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:36:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:36:48 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:36:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:36:48 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:36:48 INFO WorkspaceExplorerServiceImpl:142 - end time - 180 msc 0 sec -2016-05-02 15:36:48 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:36:57 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:57 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:36:57 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:36:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:36:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:57 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:36:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:36:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:36:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:57 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:36:57 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:36:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:36:57 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:36:57 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 15:36:57 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 15:36:57 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:36:57 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:36:57 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:36:57 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:36:57 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:36:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:36:57 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:36:57 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:36:57 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:36:57 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:36:57 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:36:57 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:57 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:57 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:57 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c410fadb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@52321a80, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5769f3a8, socketFactory=javax.net.DefaultSocketFactory@6cfbc76d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:36:57 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:36:57 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:36:57 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:243686}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:36:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:36:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1776379, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:57 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:36:57 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:57 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:57 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854186}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:57 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126240}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:36:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:36:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1167279, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1450255, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:57 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:58 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540025}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1462015, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:36:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:58 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:36:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:36:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:58 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854187}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854187}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 DEBUG command:56 - Command execution completed -2016-05-02 15:36:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854187}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 DEBUG command:56 - Command execution completed -2016-05-02 15:36:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854187}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 DEBUG command:56 - Command execution completed -2016-05-02 15:36:58 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:36:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854187}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 DEBUG command:56 - Command execution completed -2016-05-02 15:36:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854187}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 DEBUG command:56 - Command execution completed -2016-05-02 15:36:58 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854187}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:36:58 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:36:58 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:36:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 54 msc 0 sec -2016-05-02 15:36:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:36:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:36:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:36:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:36:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:36:59 DEBUG query:56 - Query completed -2016-05-02 15:36:59 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 15:36:59 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126240} -2016-05-02 15:36:59 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:243686} -2016-05-02 15:36:59 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540025} -2016-05-02 15:36:59 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854187}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:36:59 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854187} -2016-05-02 15:36:59 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:36:59 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854186} -2016-05-02 15:36:59 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:36:59 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:36:59 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 15:36:59 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:36:59 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:36:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:36:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:59 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:36:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:36:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:36:59 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:36:59 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:36:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:36:59 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:36:59 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 15:36:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:36:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:36:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:36:59 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:36:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:36:59 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:36:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:36:59 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:36:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:36:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:36:59 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:36:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:36:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c410fadb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@52321a80, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5769f3a8, socketFactory=javax.net.DefaultSocketFactory@6cfbc76d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:36:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:36:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:36:59 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854188}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:243687}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1242792, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:36:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1361068, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:36:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:59 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126241}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1130362, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:36:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:36:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:36:59 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:36:59 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540026}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1482563, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:36:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:36:59 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854189}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854189}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG command:56 - Command execution completed -2016-05-02 15:36:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854189}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG command:56 - Command execution completed -2016-05-02 15:36:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854189}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG command:56 - Command execution completed -2016-05-02 15:36:59 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:36:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854189}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG command:56 - Command execution completed -2016-05-02 15:36:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854189}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 DEBUG command:56 - Command execution completed -2016-05-02 15:36:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854189}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:36:59 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:36:59 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:36:59 INFO WorkspaceExplorerServiceImpl:188 - end time - 53 msc 0 sec -2016-05-02 15:36:59 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:36:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:36:59 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:36:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:36:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:36:59 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:36:59 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:36:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:36:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:36:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:36:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:36:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:36:59 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:36:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:36:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:36:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:36:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:00 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:00 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:37:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:00 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 15:37:00 DEBUG query:56 - Query completed -2016-05-02 15:37:00 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 15:37:00 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2126241} -2016-05-02 15:37:00 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:243687} -2016-05-02 15:37:00 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1540026} -2016-05-02 15:37:00 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1854189}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:37:00 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1854189} -2016-05-02 15:37:00 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:37:00 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1854188} -2016-05-02 15:37:00 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:37:00 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:37:00 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 15:37:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:37:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:37:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:37:00 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 15:37:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:01 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:01 DEBUG ServiceEngine:193 - get() - start -2016-05-02 15:37:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:01 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:01 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:37:01 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:37:01 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:37:01 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:37:01 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 15:37:01 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:37:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:01 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:01 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:01 DEBUG Operation:173 - get(String) - start -2016-05-02 15:37:01 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:37:01 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:37:01 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:37:01 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:37:01 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:01 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:01 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c410fadb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@52321a80, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5769f3a8, socketFactory=javax.net.DefaultSocketFactory@6cfbc76d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:37:01 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:37:01 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:243688}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1142214, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:01 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:37:01 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:01 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854190}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126242}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=897301, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1363751, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:01 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540027}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1515211, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854191}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:37:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:01 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG query:56 - Query completed -2016-05-02 15:37:01 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:37:01 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:37:01 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 15:37:01 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG update:56 - Update completed -2016-05-02 15:37:01 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:20, serverValue:1854191}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG query:56 - Query completed -2016-05-02 15:37:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:01 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:01 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 15:37:01 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 15:37:01 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 15:37:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:01 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:01 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:37:01 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:37:01 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 15:37:01 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:37:01 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 15:37:01 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 15:37:01 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:37:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:01 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:01 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:37:01 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:37:01 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:37:01 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:37:01 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:01 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:01 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c410fadb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@52321a80, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5769f3a8, socketFactory=javax.net.DefaultSocketFactory@6cfbc76d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:37:01 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:37:01 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1854192}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1555452, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:01 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:37:01 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:01 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:01 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2126243}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=996500, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:243689}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1333791, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1540028}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2702551, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:37:01 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1854193}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854193}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854193}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854193}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:01 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854193}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854193}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG command:56 - Command execution completed -2016-05-02 15:37:01 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:01 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1854193}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG query:56 - Query completed -2016-05-02 15:37:01 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:37:01 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2126243} -2016-05-02 15:37:01 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:243689} -2016-05-02 15:37:01 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1540028} -2016-05-02 15:37:01 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1854193}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:37:01 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1854193} -2016-05-02 15:37:01 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:37:01 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1854192} -2016-05-02 15:37:01 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:01 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:37:01 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:37:01 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:37:01 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 15:37:01 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:37:01 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:37:01 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:37:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:37:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:11 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:37:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:37:11 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:37:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:37:20 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854191}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:37:20 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540027} -2016-05-02 15:37:20 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:243688} -2016-05-02 15:37:20 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126242} -2016-05-02 15:37:20 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854191} -2016-05-02 15:37:20 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854190} -2016-05-02 15:37:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:37:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:37:38 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:37:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:37:38 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 15:37:38 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 15:37:38 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 15:37:38 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:37:38 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:37:38 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:37:38 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:37:38 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 15:37:38 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 15:37:38 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 15:37:38 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 15:37:38 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 15:37:38 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 15:37:38 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:37:38 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 15:37:38 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:37:38 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 15:37:38 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 15:37:38 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:37:38 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:37:38 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:37:38 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:37:38 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 15:37:38 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 15:37:38 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 15:37:38 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 15:37:38 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 15:37:38 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 15:37:38 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 15:37:38 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 15:37:38 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:37:38 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:37:38 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:38 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:38 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:37:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:37:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:37:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:37:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:37:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:37:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:37:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:37:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:37:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:38 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:37:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:37:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:37:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:37:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:37:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:37:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:37:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:37:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-02 15:37:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:37:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:37:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:40 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:37:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:37:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:37:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:37:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:37:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:37:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:37:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:37:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:37:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:37:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:37:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:37:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:37:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:37:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:37:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:37:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:37:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:37:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:37:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 208 msc 0 sec -2016-05-02 15:37:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:37:47 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:37:47 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:37:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:37:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:37:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:37:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:47 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:37:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:37:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:37:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:37:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:47 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:37:47 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:37:47 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:37:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:47 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:37:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:37:47 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:37:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:37:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:47 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:37:47 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:47 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:47 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 15:37:47 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 15:37:47 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:37:47 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:37:47 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:37:47 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:37:47 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:37:47 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:47 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:47 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:37:47 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:37:47 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:37:47 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:37:47 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:47 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:47 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:47 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c410fadb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@52321a80, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5769f3a8, socketFactory=javax.net.DefaultSocketFactory@6cfbc76d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:37:47 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:37:47 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:37:47 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:37:47 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:37:47 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:37:47 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:37:47 INFO WorkspaceExplorerServiceImpl:188 - end time - 50 msc 0 sec -2016-05-02 15:37:47 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:37:47 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:37:47 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:37:47 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:243699}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1277224, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:47 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:37:47 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:47 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:47 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1854201}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1396426, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:47 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:47 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2126253}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1203054, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:47 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1540038}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1672423, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:37:47 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1854202}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG command:56 - Command execution completed -2016-05-02 15:37:47 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG command:56 - Command execution completed -2016-05-02 15:37:47 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG command:56 - Command execution completed -2016-05-02 15:37:47 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:37:47 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG command:56 - Command execution completed -2016-05-02 15:37:47 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG command:56 - Command execution completed -2016-05-02 15:37:47 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1854202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:37:48 DEBUG query:56 - Query completed -2016-05-02 15:37:48 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 15:37:48 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2126253} -2016-05-02 15:37:48 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:243699} -2016-05-02 15:37:48 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1854202}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:37:48 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1540038} -2016-05-02 15:37:48 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1854202} -2016-05-02 15:37:48 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:37:48 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:37:48 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1854201} -2016-05-02 15:37:48 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:37:48 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 15:37:48 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:37:48 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:37:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:37:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:48 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:48 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:48 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:37:48 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:37:48 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:37:48 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:37:48 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:48 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:48 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 15:37:48 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:37:48 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:37:48 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:37:48 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:37:48 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:37:48 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:37:48 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:48 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:48 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:37:48 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:37:48 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:37:48 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:37:48 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:48 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:48 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:48 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c410fadb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@52321a80, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5769f3a8, socketFactory=javax.net.DefaultSocketFactory@6cfbc76d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:37:48 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:37:48 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:37:48 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:243700}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1138020, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:48 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:37:48 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:48 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:48 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1854203}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1355404, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:48 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:48 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2126255}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=967822, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:48 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1540040}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1290806, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:37:48 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1854204}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG command:56 - Command execution completed -2016-05-02 15:37:48 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG command:56 - Command execution completed -2016-05-02 15:37:48 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:37:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:37:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:48 DEBUG command:56 - Command execution completed -2016-05-02 15:37:48 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:37:48 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG command:56 - Command execution completed -2016-05-02 15:37:48 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 DEBUG command:56 - Command execution completed -2016-05-02 15:37:48 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1854204}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:48 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:37:48 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:37:49 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:37:49 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:37:49 INFO WorkspaceExplorerServiceImpl:188 - end time - 56 msc 0 sec -2016-05-02 15:37:49 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:37:49 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:37:49 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:37:49 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:37:49 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:37:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:37:49 DEBUG query:56 - Query completed -2016-05-02 15:37:49 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 15:37:49 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2126255} -2016-05-02 15:37:49 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1854204}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:37:49 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1854204} -2016-05-02 15:37:49 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:243700} -2016-05-02 15:37:49 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:37:49 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1540040} -2016-05-02 15:37:49 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:37:49 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:37:49 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1854203} -2016-05-02 15:37:49 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 15:37:49 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:49 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:37:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:37:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:37:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:49 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:49 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:37:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:37:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:49 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:37:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:37:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:49 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:49 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:49 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:49 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 15:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:37:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:37:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:37:50 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 15:37:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:50 DEBUG ServiceEngine:193 - get() - start -2016-05-02 15:37:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:50 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:50 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:37:50 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:37:50 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:37:50 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:37:50 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 15:37:50 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:37:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:50 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:50 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:50 DEBUG Operation:173 - get(String) - start -2016-05-02 15:37:50 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:37:50 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:37:50 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:37:50 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:37:50 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:50 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:50 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:50 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c410fadb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@52321a80, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5769f3a8, socketFactory=javax.net.DefaultSocketFactory@6cfbc76d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:37:50 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:37:50 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:37:50 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:243701}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1367717, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:50 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:37:50 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:50 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:50 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2126256}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=816367, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:50 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1854205}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1349017, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:50 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:50 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1540041}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2374473, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:37:50 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1854206}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG command:56 - Command execution completed -2016-05-02 15:37:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG command:56 - Command execution completed -2016-05-02 15:37:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG command:56 - Command execution completed -2016-05-02 15:37:50 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:37:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG command:56 - Command execution completed -2016-05-02 15:37:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG command:56 - Command execution completed -2016-05-02 15:37:50 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG command:56 - Command execution completed -2016-05-02 15:37:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG command:56 - Command execution completed -2016-05-02 15:37:50 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:50 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG query:56 - Query completed -2016-05-02 15:37:50 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:37:50 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:37:50 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 15:37:50 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG update:56 - Update completed -2016-05-02 15:37:50 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:40, serverValue:1854206}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:50 DEBUG query:56 - Query completed -2016-05-02 15:37:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:37:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:37:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:37:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:37:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:37:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:37:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:37:50 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 15:37:50 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 15:37:50 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 15:37:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:50 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:50 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:37:50 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:37:50 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 15:37:50 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:37:50 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 15:37:50 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 15:37:50 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:37:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:37:50 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:37:50 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:37:50 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:37:50 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:37:50 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:37:50 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:50 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:50 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:50 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c410fadb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@52321a80, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5769f3a8, socketFactory=javax.net.DefaultSocketFactory@6cfbc76d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:37:50 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:37:50 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:37:51 INFO connection:71 - Opened connection [connectionId{localValue:41, serverValue:243702}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1218843, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:37:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:37:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:51 INFO connection:71 - Opened connection [connectionId{localValue:44, serverValue:2126257}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=890588, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:51 INFO connection:71 - Opened connection [connectionId{localValue:42, serverValue:1854207}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1091643, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:37:51 INFO connection:71 - Opened connection [connectionId{localValue:43, serverValue:1540042}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1409229, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:37:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 15:37:51 INFO connection:71 - Opened connection [connectionId{localValue:45, serverValue:1854208}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1854208}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG command:56 - Command execution completed -2016-05-02 15:37:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1854208}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG command:56 - Command execution completed -2016-05-02 15:37:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1854208}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG command:56 - Command execution completed -2016-05-02 15:37:51 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:51 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1854208}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG command:56 - Command execution completed -2016-05-02 15:37:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1854208}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG command:56 - Command execution completed -2016-05-02 15:37:51 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1854208}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG query:56 - Query completed -2016-05-02 15:37:51 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:37:51 DEBUG connection:56 - Closing connection connectionId{localValue:44, serverValue:2126257} -2016-05-02 15:37:51 DEBUG connection:56 - Closing connection connectionId{localValue:41, serverValue:243702} -2016-05-02 15:37:51 INFO connection:71 - Closed connection [connectionId{localValue:45, serverValue:1854208}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:37:51 DEBUG connection:56 - Closing connection connectionId{localValue:45, serverValue:1854208} -2016-05-02 15:37:51 DEBUG connection:56 - Closing connection connectionId{localValue:43, serverValue:1540042} -2016-05-02 15:37:51 DEBUG connection:56 - Closing connection connectionId{localValue:42, serverValue:1854207} -2016-05-02 15:37:51 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:37:51 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:37:51 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:37:51 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:37:51 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:37:51 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 15:37:51 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:37:51 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:37:51 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:37:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:37:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:37:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:38:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:38:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:38:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:38:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:38:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:38:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:38:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:38:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:38:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:38:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:38:10 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:38:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:38:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:38:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:38:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:38:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:38:20 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:38:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:38:20 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:38:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:38:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:38:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:38:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:38:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:38:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:38:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:38:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:38:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:38:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:38:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:38:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:38:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:38:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:38:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:38:40 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:38:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:38:40 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:38:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:38:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:38:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:38:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:38:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:38:50 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:38:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:38:50 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:38:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:38:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:38:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:38:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:38:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:39:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:39:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:39:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:39:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:39:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:39:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:39:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:39:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:39:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:39:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:39:10 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:39:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:39:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:39:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:20 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:39:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:20 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:39:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:39:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:39:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:39:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:39:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:39:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:39:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:39:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:39:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:40 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:39:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:40 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:39:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:39:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:39:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:50 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:39:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:50 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:39:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:39:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:39:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:39:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:40:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:40:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:40:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:40:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:40:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:40:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:40:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:10 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:40:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:40:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:40:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:40:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:40:20 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:40:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:20 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:40:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:40:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:40:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:40:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:40:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:40:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:40:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:40:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:40:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:40:40 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:40:40 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:40:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:40:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:40:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:40:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:50 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:40:50 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:40:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:40:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:40:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:40:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:40:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:40:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:41:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:41:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:41:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:41:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:41:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:41:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:41:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:41:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:01 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 15:49:01 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 15:49:01 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 15:49:02 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:49:02 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:49:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:49:02 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:49:02 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4eb5ba4c -2016-05-02 15:49:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:02 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:49:02 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:49:02 DEBUG TemplateModel:83 - 2016-05-02 15:49:02, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:49:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:49:02 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 15:49:04 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:49:04 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:49:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:49:04 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:49:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:49:04 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:49:04 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:49:04 DEBUG TemplateModel:83 - 2016-05-02 15:49:04, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:49:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:49:04 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:49:04 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 114 ms -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 15:49:04 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 15:49:05 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 15:49:05 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:49:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:49:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@67889e30 -2016-05-02 15:49:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4e160206 -2016-05-02 15:49:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@337b3882 -2016-05-02 15:49:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@7245cc99 -2016-05-02 15:49:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 242 ms -2016-05-02 15:49:05 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 15:49:05 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 15:49:05 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 15:49:05 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 15:49:05 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 15:49:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:49:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:49:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 15:49:05 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:49:05 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:49:05 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:49:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:49:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:49:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:49:05 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 15:49:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:06 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 15:49:06 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 15:49:06 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 15:49:06 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 15:49:06 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 15:49:06 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 15:49:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:49:06 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:49:06 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 15:49:06 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 15:49:06 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 15:49:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:49:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:06 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 15:49:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:06 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 15:49:06 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:49:06 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 1055 ms -2016-05-02 15:49:06 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 15:49:06 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:49:06 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 15:49:06 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:49:07 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:49:07 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 15:49:07 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:49:07 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:49:07 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:07 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:49:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 15:49:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:07 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:49:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 15:49:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:07 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:49:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 15:49:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:07 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:49:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 15:49:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:07 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:49:07 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:49:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:49:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:08 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 15:49:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:08 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:08 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:08 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 15:49:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:08 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 15:49:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:08 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 15:49:08 INFO WorkspaceExplorerServiceImpl:188 - end time - 227 msc 0 sec -2016-05-02 15:49:08 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 15:49:08 INFO WorkspaceExplorerServiceImpl:188 - end time - 123 msc 0 sec -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:49:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:49:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 15:49:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:49:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 15:49:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 15:49:08 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 15:49:08 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 15:49:08 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 15:49:08 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 15:49:08 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 15:49:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:49:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:49:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 15:49:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:08 INFO WorkspaceExplorerServiceImpl:188 - end time - 358 msc 0 sec -2016-05-02 15:49:16 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:49:16 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:49:16 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:49:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:16 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:49:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:49:16 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 15:49:16 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:49:16 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:49:18 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:49:18 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:49:18 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:49:18 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 15:49:18 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:49:18 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:49:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:49:18 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 15:49:18 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 15:49:18 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:49:18 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:49:18 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:49:18 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:49:18 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 15:49:18 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 15:49:18 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 15:49:18 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 15:49:18 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 15:49:18 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 15:49:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:49:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 15:49:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:49:18 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 15:49:18 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 15:49:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:49:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:49:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:49:18 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:49:18 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 15:49:18 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 15:49:18 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 15:49:18 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 15:49:18 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 15:49:18 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 15:49:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 15:49:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 15:49:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:49:18 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:49:18 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:49:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:49:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:49:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:49:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:49:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:49:18 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:49:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:49:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:49:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:49:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:49:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:49:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:49:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:49:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:49:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:49:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:49:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 225 msc 0 sec -2016-05-02 15:49:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:49:21 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:49:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:49:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:49:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:49:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:49:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:49:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:49:21 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:49:21 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:49:21 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:49:21 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:49:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:49:21 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:49:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:49:21 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:49:21 INFO WorkspaceExplorerServiceImpl:142 - end time - 190 msc 0 sec -2016-05-02 15:49:21 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:49:26 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:49:26 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:49:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:49:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:49:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:49:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:26 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:49:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:49:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:49:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:49:26 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:49:26 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:49:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:49:26 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:49:26 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 15:49:26 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 15:49:26 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:49:26 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:49:26 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:49:26 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:49:26 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:49:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:49:26 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:49:26 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:49:26 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:49:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:49:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:49:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:27 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:49:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:49:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:49:27 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:49:27 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:49:27 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:49:27 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:27 INFO WorkspaceExplorerServiceImpl:188 - end time - 78 msc 0 sec -2016-05-02 15:49:27 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:49:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:49:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:49:27 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:27 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:27 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@b2cdb765, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@442faa14, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@15472a05, socketFactory=javax.net.DefaultSocketFactory@7317b92c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:49:27 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:49:27 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:49:27 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:243819}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1439243, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:27 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:49:27 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:27 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:27 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126373}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=946762, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:27 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540158}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1710039, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:27 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1854327}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1508928, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:27 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:27 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854328}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854328}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG command:56 - Command execution completed -2016-05-02 15:49:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854328}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG command:56 - Command execution completed -2016-05-02 15:49:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854328}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG command:56 - Command execution completed -2016-05-02 15:49:27 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:49:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854328}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG command:56 - Command execution completed -2016-05-02 15:49:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854328}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG command:56 - Command execution completed -2016-05-02 15:49:27 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854328}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:49:27 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:49:27 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:49:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:49:27 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:49:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:49:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:27 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:49:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:49:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:49:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:49:28 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:49:28 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:49:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:49:28 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:49:28 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 15:49:28 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:49:28 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:49:28 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:49:28 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:49:28 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:49:28 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:49:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:49:28 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:49:28 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:49:28 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:49:28 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:49:28 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:49:28 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:28 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:28 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:28 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@b2cdb765, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@442faa14, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@15472a05, socketFactory=javax.net.DefaultSocketFactory@7317b92c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:49:28 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:49:28 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:49:28 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854329}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1497243, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:28 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:49:28 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:28 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:28 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:28 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:243820}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126374}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1353202, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1363639, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:49:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:49:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:28 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540159}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1535963, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:49:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 15:49:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:49:28 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854330}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854330}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG command:56 - Command execution completed -2016-05-02 15:49:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854330}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG command:56 - Command execution completed -2016-05-02 15:49:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854330}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG command:56 - Command execution completed -2016-05-02 15:49:28 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:49:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854330}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG command:56 - Command execution completed -2016-05-02 15:49:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854330}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 DEBUG command:56 - Command execution completed -2016-05-02 15:49:28 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854330}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:28 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:49:28 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:49:28 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-02 15:49:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:49:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:49:28 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:49:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:49:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:49:28 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:49:28 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:49:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:28 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 15:49:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:28 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:49:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:49:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:49:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:28 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:49:28 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:49:28 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:49:28 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 15:49:28 DEBUG query:56 - Query completed -2016-05-02 15:49:28 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 15:49:28 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126373} -2016-05-02 15:49:28 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:243819} -2016-05-02 15:49:28 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854328}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:49:28 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540158} -2016-05-02 15:49:28 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854328} -2016-05-02 15:49:28 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1854327} -2016-05-02 15:49:28 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:49:28 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:49:28 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:49:28 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 15:49:29 DEBUG query:56 - Query completed -2016-05-02 15:49:29 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 15:49:29 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126374} -2016-05-02 15:49:29 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:243820} -2016-05-02 15:49:29 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540159} -2016-05-02 15:49:29 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854330}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:49:29 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854330} -2016-05-02 15:49:29 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854329} -2016-05-02 15:49:29 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:49:29 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:49:29 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:49:29 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 15:49:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:49:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:49:29 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 15:49:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:29 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:49:29 DEBUG ServiceEngine:193 - get() - start -2016-05-02 15:49:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:49:29 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:49:29 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:49:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:49:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:49:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:49:29 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 15:49:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:49:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:49:29 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:49:29 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:49:29 DEBUG Operation:173 - get(String) - start -2016-05-02 15:49:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:49:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:49:29 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:49:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:49:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@b2cdb765, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@442faa14, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@15472a05, socketFactory=javax.net.DefaultSocketFactory@7317b92c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:49:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:49:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:49:29 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854331}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1350638, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:49:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:29 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126375}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1018116, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:29 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:243821}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1485027, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:29 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540160}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1683475, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:29 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854332}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG command:56 - Command execution completed -2016-05-02 15:49:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG command:56 - Command execution completed -2016-05-02 15:49:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG command:56 - Command execution completed -2016-05-02 15:49:29 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:49:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG command:56 - Command execution completed -2016-05-02 15:49:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG command:56 - Command execution completed -2016-05-02 15:49:29 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:49:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG command:56 - Command execution completed -2016-05-02 15:49:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG command:56 - Command execution completed -2016-05-02 15:49:29 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:49:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:29 DEBUG query:56 - Query completed -2016-05-02 15:49:29 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:49:29 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:49:29 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 15:49:29 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG update:56 - Update completed -2016-05-02 15:49:30 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1854332}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG query:56 - Query completed -2016-05-02 15:49:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:49:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:49:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:49:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:49:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:49:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:49:30 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:49:30 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 15:49:30 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 15:49:30 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 15:49:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:49:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:49:30 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:49:30 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:49:30 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 15:49:30 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:49:30 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 15:49:30 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 15:49:30 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:49:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:49:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:49:30 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:49:30 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:49:30 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:49:30 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:49:30 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:30 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:30 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:30 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@b2cdb765, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@442faa14, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@15472a05, socketFactory=javax.net.DefaultSocketFactory@7317b92c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:49:30 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:49:30 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:49:30 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:243822}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2588086, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:30 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:49:30 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:30 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:49:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:30 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126376}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1153987, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:30 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854333}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1401665, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:30 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:49:30 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540161}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1275060, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:49:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:49:30 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854334}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854334}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG command:56 - Command execution completed -2016-05-02 15:49:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854334}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG command:56 - Command execution completed -2016-05-02 15:49:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854334}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG command:56 - Command execution completed -2016-05-02 15:49:30 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:49:30 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:49:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854334}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG command:56 - Command execution completed -2016-05-02 15:49:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854334}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG command:56 - Command execution completed -2016-05-02 15:49:30 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:49:30 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854334}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:30 DEBUG query:56 - Query completed -2016-05-02 15:49:30 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:49:30 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126376} -2016-05-02 15:49:30 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:243822} -2016-05-02 15:49:30 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854334}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:49:30 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854334} -2016-05-02 15:49:30 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540161} -2016-05-02 15:49:30 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:49:30 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854333} -2016-05-02 15:49:30 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:49:30 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:49:30 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:49:30 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:49:30 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 15:49:30 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:49:30 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:49:30 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:49:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:49:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:49:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:49:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:49:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:49:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:49:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:49:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:50:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:50:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:50:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:50:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:50:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:50:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:50:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:50:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:50:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:50:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:50:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:50:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:50:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:50:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:50:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:50:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:50:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:50:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:50:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:50:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:50:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:50:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:50:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:50:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:50:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:50:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:50:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:50:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:50:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:50:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:50:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:50:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:50:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:50:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:50:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:50:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:50:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:50:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:50:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:50:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:50:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:50:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:52:10 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 15:52:10 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 15:52:10 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 15:52:10 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:52:10 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:52:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:52:10 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:52:10 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@74dec341 -2016-05-02 15:52:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:52:10 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:52:10 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:52:10 DEBUG TemplateModel:83 - 2016-05-02 15:52:10, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:52:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:52:10 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 15:52:12 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:52:12 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:52:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:52:12 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:52:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:12 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:52:12 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:52:12 DEBUG TemplateModel:83 - 2016-05-02 15:52:12, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:52:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:52:12 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:52:12 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 124 ms -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 15:52:12 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 15:52:12 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 15:52:12 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:52:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:52:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2cb6a5d7 -2016-05-02 15:52:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@e107ea -2016-05-02 15:52:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4f5838b6 -2016-05-02 15:52:13 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@25284684 -2016-05-02 15:52:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 128 ms -2016-05-02 15:52:13 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 15:52:13 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 15:52:13 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 15:52:13 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 15:52:13 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 15:52:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:52:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 15:52:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-02 15:52:13 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 15:52:13 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:52:13 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 15:52:13 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:52:13 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:52:13 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:52:13 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:52:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:52:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:52:13 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 15:52:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:13 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 15:52:13 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 15:52:13 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 15:52:13 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 15:52:13 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 15:52:13 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 15:52:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 15:52:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:52:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 15:52:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 15:52:13 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 15:52:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:13 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 15:52:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:13 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 15:52:14 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:52:14 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 15:52:14 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:52:14 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:52:14 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 15:52:14 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:52:14 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:52:14 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 15:52:14 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 15:52:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:14 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:52:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 15:52:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:14 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:52:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 15:52:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:14 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:52:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 15:52:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:14 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:52:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 15:52:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:15 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:52:15 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:52:15 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:15 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:15 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 15:52:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:15 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 15:52:15 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 15:52:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 125 msc 0 sec -2016-05-02 15:52:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:15 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:52:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:52:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:15 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 15:52:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:52:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:52:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 15:52:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:52:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 15:52:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 15:52:15 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 15:52:15 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 15:52:15 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 15:52:15 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 15:52:15 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 15:52:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 15:52:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:52:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:52:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-02 15:52:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 15:52:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 15:52:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 15:52:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 359 msc 0 sec -2016-05-02 15:52:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:16 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 15:52:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 1143 msc 1 sec -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:52:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:52:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:52:22 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 15:52:22 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:52:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:52:22 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:52:22 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:52:22 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:52:22 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 15:52:22 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:52:22 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:52:22 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:52:22 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 15:52:22 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 15:52:22 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:52:22 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:52:22 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:52:22 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:52:22 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 15:52:22 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 15:52:22 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 15:52:22 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 15:52:22 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 15:52:22 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 15:52:22 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:52:22 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 15:52:22 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:52:22 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 15:52:22 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 15:52:22 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:52:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:52:22 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:52:22 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:52:22 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 15:52:22 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 15:52:22 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 15:52:22 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 15:52:22 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 15:52:22 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 15:52:22 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 15:52:22 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 15:52:22 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:52:22 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:52:22 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:52:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:52:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:22 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:52:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:52:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:52:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:52:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:22 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:52:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:52:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:52:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:52:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:52:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:52:23 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:52:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:52:23 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:52:23 INFO WorkspaceExplorerServiceImpl:142 - end time - 198 msc 0 sec -2016-05-02 15:52:23 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:52:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:23 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:52:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:52:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:52:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:25 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:25 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:52:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:52:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:52:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:52:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:52:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:52:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:52:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:52:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:52:25 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:52:25 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:52:25 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:52:25 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:52:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:52:25 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:52:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:52:25 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:52:25 INFO WorkspaceExplorerServiceImpl:142 - end time - 187 msc 0 sec -2016-05-02 15:52:25 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:52:31 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:52:31 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:52:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:31 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:52:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:31 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:52:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:52:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:52:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:52:31 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:52:31 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:52:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:52:31 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:52:31 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 15:52:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 15:52:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:52:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:52:31 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:52:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:52:31 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:52:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:52:31 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:52:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:52:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:52:31 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:52:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:52:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:52:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:52:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:52:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:52:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:52:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:52:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e330b5db, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@c4c4e90, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@65b9d63e, socketFactory=javax.net.DefaultSocketFactory@ba0b49f, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:52:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:52:31 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:52:31 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:52:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:52:31 INFO WorkspaceExplorerServiceImpl:188 - end time - 68 msc 0 sec -2016-05-02 15:52:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:52:31 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1854365}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1476900, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:31 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:243853}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:52:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1378673, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:52:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:52:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:31 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126407}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=998731, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:31 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540192}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1395660, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 15:52:31 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854366}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854366}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG command:56 - Command execution completed -2016-05-02 15:52:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854366}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG command:56 - Command execution completed -2016-05-02 15:52:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854366}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG command:56 - Command execution completed -2016-05-02 15:52:31 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:52:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854366}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG command:56 - Command execution completed -2016-05-02 15:52:31 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854366}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:31 DEBUG command:56 - Command execution completed -2016-05-02 15:52:31 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854366}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:32 DEBUG query:56 - Query completed -2016-05-02 15:52:32 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 15:52:32 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126407} -2016-05-02 15:52:32 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:243853} -2016-05-02 15:52:32 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540192} -2016-05-02 15:52:32 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854366}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:52:32 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854366} -2016-05-02 15:52:32 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1854365} -2016-05-02 15:52:32 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:52:32 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:52:32 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:52:32 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 15:52:32 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:52:32 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:52:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:52:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:32 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:52:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:52:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:52:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:32 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:52:32 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:52:32 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:52:32 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:52:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:52:32 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:52:32 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 15:52:32 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:52:32 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:52:32 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:52:32 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:52:32 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:52:32 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:52:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:52:32 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:52:32 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:52:32 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:52:32 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:52:32 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:52:32 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:32 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:32 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:32 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e330b5db, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@c4c4e90, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@65b9d63e, socketFactory=javax.net.DefaultSocketFactory@ba0b49f, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:52:32 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:52:32 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:52:32 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854367}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:32 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1488453, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:32 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:52:32 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:32 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:32 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:32 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126408}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:32 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:243854}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:32 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1964453, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1152440, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:52:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:52:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:52:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:52:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:52:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:52:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:33 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540193}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:33 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2191206, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:52:33 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854368}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854368}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:33 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:52:33 DEBUG command:56 - Command execution completed -2016-05-02 15:52:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854368}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:33 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:52:33 DEBUG command:56 - Command execution completed -2016-05-02 15:52:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854368}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:33 DEBUG command:56 - Command execution completed -2016-05-02 15:52:33 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:52:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854368}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:33 DEBUG command:56 - Command execution completed -2016-05-02 15:52:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854368}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:33 DEBUG command:56 - Command execution completed -2016-05-02 15:52:33 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854368}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:33 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:52:33 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:52:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-02 15:52:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:52:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:52:33 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:52:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:52:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:52:34 DEBUG query:56 - Query completed -2016-05-02 15:52:34 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 15:52:34 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126408} -2016-05-02 15:52:34 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:243854} -2016-05-02 15:52:34 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540193} -2016-05-02 15:52:34 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854368}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:52:34 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854368} -2016-05-02 15:52:34 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854367} -2016-05-02 15:52:34 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:52:34 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:52:34 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:52:34 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 15:52:36 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:52:36 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:52:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:52:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:52:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:52:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:36 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:52:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:52:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:52:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:52:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:36 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:52:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:52:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:52:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:52:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:52:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:52:36 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 15:52:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:52:37 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:52:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:52:37 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 15:52:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:37 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:52:37 DEBUG ServiceEngine:193 - get() - start -2016-05-02 15:52:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:52:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:52:37 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:52:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:52:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:52:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:52:37 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 15:52:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:52:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:52:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:52:37 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:52:37 DEBUG Operation:173 - get(String) - start -2016-05-02 15:52:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:52:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:52:37 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:52:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:52:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e330b5db, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@c4c4e90, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@65b9d63e, socketFactory=javax.net.DefaultSocketFactory@ba0b49f, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:52:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:52:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854369}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:243858}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1246413, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1354030, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:52:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:37 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126409}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1248055, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540194}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1262084, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854370}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:52:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:52:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:52:37 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG query:56 - Query completed -2016-05-02 15:52:37 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:52:37 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:52:37 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 15:52:37 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG update:56 - Update completed -2016-05-02 15:52:37 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1854370}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG query:56 - Query completed -2016-05-02 15:52:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:52:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:52:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:52:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:52:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:52:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:52:37 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:52:37 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 15:52:37 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 15:52:37 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 15:52:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:52:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:52:37 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:52:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:52:37 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 15:52:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:52:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 15:52:37 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 15:52:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:52:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:52:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:52:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:52:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:52:37 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:52:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:52:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e330b5db, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@c4c4e90, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@65b9d63e, socketFactory=javax.net.DefaultSocketFactory@ba0b49f, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:52:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:52:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854371}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1194362, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:52:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:243859}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126410}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1537344, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=997020, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540195}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1326366, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:52:37 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854372}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854372}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854372}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854372}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:52:37 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:52:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854372}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854372}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG command:56 - Command execution completed -2016-05-02 15:52:37 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:52:37 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854372}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG query:56 - Query completed -2016-05-02 15:52:37 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:52:37 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126410} -2016-05-02 15:52:37 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:243859} -2016-05-02 15:52:37 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540195} -2016-05-02 15:52:37 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854372}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:52:37 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854372} -2016-05-02 15:52:37 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854371} -2016-05-02 15:52:37 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:52:37 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:52:37 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:52:37 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:52:37 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:52:37 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 15:52:37 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:52:37 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:52:37 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:52:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:52:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:52:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:52:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:52:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:52:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:52:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:52:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:52:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:52:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:52:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:52:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:52:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:53:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:53:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:53:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:53:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:53:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:53:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:53:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:53:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:53:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:53:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:53:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:53:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:53:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:53:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:53:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:53:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:53:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:53:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:53:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:53:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:53:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:53:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:53:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:53:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:53:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:53:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:53:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:53:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:53:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:53:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:53:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:53:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:53:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:53:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:53:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:53:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:53:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:53:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:53:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:54:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 15:54:00 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 15:54:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:54:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:54:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:54:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 15:54:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:54:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:54:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:54:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:54:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:54:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:54:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:54:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:54:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:54:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:54:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:54:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:54:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:54:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:54:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:54:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:54:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:54:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:54:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:54:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:54:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:54:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:54:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:54:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:54:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:54:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:54:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=42.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:55:38 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 15:55:38 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 15:55:38 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 15:55:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:55:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:55:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:55:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:55:38 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3b8a9b8e -2016-05-02 15:55:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:55:38 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:55:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:55:38 DEBUG TemplateModel:83 - 2016-05-02 15:55:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:55:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:55:38 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 15:55:40 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 15:55:40 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 15:55:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:55:40 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 15:55:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:55:40 INFO ASLSession:352 - Logging the entrance -2016-05-02 15:55:40 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 15:55:40 DEBUG TemplateModel:83 - 2016-05-02 15:55:40, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 15:55:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:55:40 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:55:40 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 123 ms -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 15:55:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 15:55:40 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 15:55:40 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:55:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 15:55:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@e7092a4 -2016-05-02 15:55:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@11b3fac5 -2016-05-02 15:55:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1055e8bc -2016-05-02 15:55:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@6405631e -2016-05-02 15:55:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 134 ms -2016-05-02 15:55:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 15:55:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 15:55:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 15:55:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 15:55:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 15:55:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:55:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:55:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 15:55:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-02 15:55:41 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 15:55:41 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:55:41 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 15:55:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:55:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:55:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:55:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:55:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:55:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:55:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:55:41 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 15:55:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:41 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 15:55:41 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 15:55:41 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 15:55:41 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 15:55:41 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 15:55:41 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 15:55:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 15:55:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:55:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 15:55:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 20 ms -2016-05-02 15:55:41 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 15:55:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:55:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:41 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 15:55:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:41 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 15:55:41 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:55:42 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:55:42 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 15:55:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 15:55:42 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 15:55:42 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:55:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:55:42 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 15:55:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 15:55:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:55:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 15:55:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:55:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 15:55:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 15:55:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 15:55:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 15:55:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 15:55:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:55:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:55:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:44 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 15:55:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:44 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 15:55:44 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 15:55:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 135 msc 0 sec -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:55:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:55:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:44 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 15:55:44 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 15:55:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:44 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:55:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 138 msc 0 sec -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:55:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:55:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:55:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:55:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 15:55:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 15:55:44 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 15:55:44 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 15:55:44 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 15:55:44 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:55:44 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:55:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 15:55:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 15:55:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 15:55:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 366 msc 0 sec -2016-05-02 15:55:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:55:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:55:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:55:49 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 15:55:49 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:55:49 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 15:55:49 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 15:55:49 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 15:55:49 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 15:55:49 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 15:55:49 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 15:55:49 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 15:55:49 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 15:55:49 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 15:55:49 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 15:55:49 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 15:55:49 DEBUG WPS2SM:204 - Schema: null -2016-05-02 15:55:49 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 15:55:49 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:55:49 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 15:55:49 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 15:55:49 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 15:55:49 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 15:55:49 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 15:55:49 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 15:55:49 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 15:55:49 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 15:55:49 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:55:49 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 15:55:49 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 15:55:49 DEBUG WPS2SM:92 - WPS type: -2016-05-02 15:55:49 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 15:55:49 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 15:55:49 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 15:55:49 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 15:55:49 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 15:55:49 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 15:55:49 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 15:55:49 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 15:55:49 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 15:55:49 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 15:55:49 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 15:55:49 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 15:55:49 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 15:55:49 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 15:55:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:55:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:55:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:55:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:55:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:55:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:55:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:49 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 15:55:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 15:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:55:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:55:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:55:50 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:55:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:55:50 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:55:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 15:55:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 15:55:50 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 15:55:50 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 15:55:50 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 15:55:50 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 15:55:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:55:50 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 15:55:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 15:55:50 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 15:55:50 INFO WorkspaceExplorerServiceImpl:142 - end time - 233 msc 0 sec -2016-05-02 15:55:50 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 15:55:55 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:55:55 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:55:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:55:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 15:55:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 15:55:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:55 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:55:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:55:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:55:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:55:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:55:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:55:55 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:55:55 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:55:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:55:55 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:55:55 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 15:55:55 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 15:55:55 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:55:55 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:55:55 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:55:55 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:55:55 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:55:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:55:55 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:55:55 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:55:55 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:55:55 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:55:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:55:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:55 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:55:55 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:55:55 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:55:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:55:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:55:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:55:55 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:55 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:55 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c10022a3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@184c5987, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3c89ba87, socketFactory=javax.net.DefaultSocketFactory@7635141d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:55:55 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:55:55 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:55:55 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:55:55 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 15:55:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 83 msc 0 sec -2016-05-02 15:55:56 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:55:56 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:55:56 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:243891}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1739466, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1854407}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:55:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1811098, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126446}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=953632, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540231}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1621337, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854408}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854408}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854408}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854408}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:55:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854408}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854408}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854408}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 15:55:56 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:55:56 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:55:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:55:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:55:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:55:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:56 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:55:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:55:56 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:55:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:55:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:56 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:55:56 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:55:56 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:55:56 DEBUG ServiceEngine:306 - get() - start -2016-05-02 15:55:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:55:56 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:55:56 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 15:55:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 15:55:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:55:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:55:56 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 15:55:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:55:56 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:55:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:55:56 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:55:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:55:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:55:56 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:55:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:55:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c10022a3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@184c5987, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3c89ba87, socketFactory=javax.net.DefaultSocketFactory@7635141d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:55:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:55:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:243893}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:55:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:55:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:55:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:55:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:55:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:55:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=28787819, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:55:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=28.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126447}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:55:56 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 15:55:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1442774, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=28.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854409}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1432259, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=28.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540232}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1405672, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=28.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 15:55:56 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:55:56 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 15:55:56 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854410}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854410}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854410}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854410}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:55:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854410}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854410}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 DEBUG command:56 - Command execution completed -2016-05-02 15:55:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854410}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:56 INFO WorkspaceExplorerServiceImpl:188 - end time - 55 msc 0 sec -2016-05-02 15:55:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 15:55:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:55:57 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 15:55:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 15:55:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 15:55:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=23.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 15:55:57 DEBUG query:56 - Query completed -2016-05-02 15:55:57 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 15:55:57 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126446} -2016-05-02 15:55:57 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854408}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:55:57 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540231} -2016-05-02 15:55:57 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:243891} -2016-05-02 15:55:57 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854408} -2016-05-02 15:55:57 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1854407} -2016-05-02 15:55:57 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:55:57 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:55:57 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 15:55:57 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 15:55:57 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:55:57 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:55:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:55:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:55:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:57 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:55:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:55:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 15:55:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 15:55:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:57 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:55:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:55:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:55:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:55:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:57 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:55:57 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:55:57 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:55:57 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 15:55:58 DEBUG query:56 - Query completed -2016-05-02 15:55:58 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 15:55:58 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126447} -2016-05-02 15:55:58 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:243893} -2016-05-02 15:55:58 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854410}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:55:58 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540232} -2016-05-02 15:55:58 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854410} -2016-05-02 15:55:58 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:55:58 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:55:58 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 15:55:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 15:55:58 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854409} -2016-05-02 15:55:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 15:55:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 15:55:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 15:55:58 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 15:55:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:55:58 DEBUG ServiceEngine:193 - get() - start -2016-05-02 15:55:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:55:58 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:55:58 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:55:58 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:55:58 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:55:58 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 15:55:58 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 15:55:58 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:55:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:55:58 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:55:58 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:55:58 DEBUG Operation:173 - get(String) - start -2016-05-02 15:55:58 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:55:58 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:55:58 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:55:58 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:55:58 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:58 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:58 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c10022a3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@184c5987, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3c89ba87, socketFactory=javax.net.DefaultSocketFactory@7635141d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:55:58 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:55:58 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854412}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1605748, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:58 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:55:58 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:243894}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:58 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1386816, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126448}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1103330, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540233}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1337636, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854413}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Command execution completed -2016-05-02 15:55:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Command execution completed -2016-05-02 15:55:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Command execution completed -2016-05-02 15:55:58 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:55:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Command execution completed -2016-05-02 15:55:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Command execution completed -2016-05-02 15:55:58 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:55:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Command execution completed -2016-05-02 15:55:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Command execution completed -2016-05-02 15:55:58 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:55:58 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG query:56 - Query completed -2016-05-02 15:55:58 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:55:58 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 15:55:58 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 15:55:58 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG update:56 - Update completed -2016-05-02 15:55:58 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1854413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG query:56 - Query completed -2016-05-02 15:55:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 15:55:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 15:55:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 15:55:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 15:55:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 15:55:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 15:55:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 15:55:58 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 15:55:58 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 15:55:58 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 15:55:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:55:58 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:55:58 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 15:55:58 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 15:55:58 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 15:55:58 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 15:55:58 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 15:55:58 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 15:55:58 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 15:55:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 15:55:58 DEBUG BucketCoding:42 - coding name done -2016-05-02 15:55:58 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 15:55:58 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 15:55:58 DEBUG MongoIO:77 - open mongo connection -2016-05-02 15:55:58 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 15:55:58 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:58 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:58 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c10022a3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@184c5987, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3c89ba87, socketFactory=javax.net.DefaultSocketFactory@7635141d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 15:55:58 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 15:55:58 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:243895}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1240342, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:58 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 15:55:58 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:58 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126449}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1451025, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854414}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1188333, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:58 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540234}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1059070, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 15:55:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-02 15:55:58 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854415}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Command execution completed -2016-05-02 15:55:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:58 DEBUG command:56 - Command execution completed -2016-05-02 15:55:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:59 DEBUG command:56 - Command execution completed -2016-05-02 15:55:59 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:55:59 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:55:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:59 DEBUG command:56 - Command execution completed -2016-05-02 15:55:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:59 DEBUG command:56 - Command execution completed -2016-05-02 15:55:59 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:55:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:55:59 DEBUG query:56 - Query completed -2016-05-02 15:55:59 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 15:55:59 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126449} -2016-05-02 15:55:59 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:243895} -2016-05-02 15:55:59 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540234} -2016-05-02 15:55:59 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854415}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 15:55:59 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854415} -2016-05-02 15:55:59 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854414} -2016-05-02 15:55:59 INFO MongoIO:508 - Mongo has been closed -2016-05-02 15:55:59 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 15:55:59 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:55:59 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:55:59 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:55:59 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 15:55:59 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 15:55:59 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:55:59 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 15:56:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:56:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:56:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:56:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:56:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:56:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 15:56:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:56:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:56:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:56:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:56:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:56:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:56:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:56:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:56:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:56:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:56:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:56:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:56:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:56:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:56:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:56:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 15:56:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:56:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:56:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:56:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:56:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:56:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:56:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:56:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:56:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:56:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:56:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:56:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:56:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:56:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:56:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 15:56:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:56:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:57:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:57:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:57:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:57:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:57:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:57:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:57:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:57:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:57:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:57:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:57:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:57:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:57:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:57:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:57:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:57:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:57:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 15:57:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 15:57:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:57:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:57:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:57:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:57:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:57:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 15:57:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:57:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:57:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:57:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:57:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:57:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:57:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:57:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:57:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:57:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:57:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:57:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:57:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:57:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:57:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:57:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 15:57:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:57:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:57:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:57:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:57:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:57:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:57:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:57:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 15:57:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:57:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}] -2016-05-02 15:58:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:58:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:58:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:58:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}] -2016-05-02 15:58:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}] -2016-05-02 15:58:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}] -2016-05-02 15:58:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:58:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:58:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:58:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:58:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:58:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:58:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:58:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}] -2016-05-02 15:58:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:58:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.2 ms, state=CONNECTED}] -2016-05-02 15:58:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 15:58:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 15:58:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:58:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:58:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:58:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.2 ms, state=CONNECTED}] -2016-05-02 15:58:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.2 ms, state=CONNECTED}] -2016-05-02 15:58:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.2 ms, state=CONNECTED}] -2016-05-02 15:58:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:58:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}] -2016-05-02 15:58:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:58:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}] -2016-05-02 15:58:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:58:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}] -2016-05-02 15:58:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:58:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}] -2016-05-02 15:58:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:58:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}] -2016-05-02 15:58:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:58:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}] -2016-05-02 15:58:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:58:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}] -2016-05-02 15:58:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:58:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}] -2016-05-02 15:58:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:58:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:58:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:58:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:58:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:58:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:58:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:58:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:58:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:58:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:59:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:59:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:59:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:59:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:59:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:59:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:59:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:59:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}] -2016-05-02 15:59:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 15:59:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 15:59:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:59:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}] -2016-05-02 15:59:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:59:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}] -2016-05-02 15:59:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:59:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}] -2016-05-02 15:59:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:59:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:59:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:59:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:59:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:59:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:59:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:59:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 15:59:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:59:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:59:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:59:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:59:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:59:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:59:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:59:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 15:59:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:59:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:59:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:59:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:59:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:59:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:59:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:59:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 15:59:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:59:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}] -2016-05-02 15:59:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 15:59:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}] -2016-05-02 15:59:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 15:59:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}] -2016-05-02 15:59:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 15:59:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}] -2016-05-02 15:59:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 15:59:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}] -2016-05-02 16:00:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:00:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}] -2016-05-02 16:00:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:00:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}] -2016-05-02 16:00:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:00:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}] -2016-05-02 16:00:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:00:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}] -2016-05-02 16:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:00:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:00:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:00:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}] -2016-05-02 16:00:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:00:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=6.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}] -2016-05-02 16:00:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:00:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}] -2016-05-02 16:00:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:00:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.5 ms, state=CONNECTED}] -2016-05-02 16:00:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:00:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.5 ms, state=CONNECTED}] -2016-05-02 16:00:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:00:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.5 ms, state=CONNECTED}] -2016-05-02 16:00:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:00:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.5 ms, state=CONNECTED}] -2016-05-02 16:00:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:00:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-02 16:00:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:00:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-02 16:00:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:00:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-02 16:00:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:00:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-02 16:00:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:00:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-02 16:00:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:00:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-02 16:00:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:00:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-02 16:00:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:00:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:00:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.6 ms, state=CONNECTED}] -2016-05-02 16:00:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.6 ms, state=CONNECTED}] -2016-05-02 16:00:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:00:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.6 ms, state=CONNECTED}] -2016-05-02 16:00:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:00:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.6 ms, state=CONNECTED}] -2016-05-02 16:00:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:00:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}] -2016-05-02 16:00:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:00:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=31.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}] -2016-05-02 16:01:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:01:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:01:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:01:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=31.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}] -2016-05-02 16:01:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:01:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=31.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}] -2016-05-02 16:01:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:01:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=31.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}] -2016-05-02 16:01:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:01:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=25.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}] -2016-05-02 16:01:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:01:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=25.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}] -2016-05-02 16:01:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:01:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=25.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}] -2016-05-02 16:01:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:01:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=25.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=9.7 ms, state=CONNECTED}] -2016-05-02 16:01:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:01:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=21.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=9.7 ms, state=CONNECTED}] -2016-05-02 16:01:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:01:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=21.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=9.7 ms, state=CONNECTED}] -2016-05-02 16:01:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:01:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=21.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=9.7 ms, state=CONNECTED}] -2016-05-02 16:01:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:01:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=21.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.1 ms, state=CONNECTED}] -2016-05-02 16:01:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:01:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=17.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.1 ms, state=CONNECTED}] -2016-05-02 16:01:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:01:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=17.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.1 ms, state=CONNECTED}] -2016-05-02 16:01:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:01:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=17.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=8.1 ms, state=CONNECTED}] -2016-05-02 16:01:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:01:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=17.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.9 ms, state=CONNECTED}] -2016-05-02 16:01:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:01:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.9 ms, state=CONNECTED}] -2016-05-02 16:01:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:01:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.9 ms, state=CONNECTED}] -2016-05-02 16:01:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:01:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.9 ms, state=CONNECTED}] -2016-05-02 16:01:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:01:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.9 ms, state=CONNECTED}] -2016-05-02 16:01:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:01:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=11.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.9 ms, state=CONNECTED}] -2016-05-02 16:01:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:01:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=11.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.9 ms, state=CONNECTED}] -2016-05-02 16:01:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:01:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=12.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=11.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.9 ms, state=CONNECTED}] -2016-05-02 16:01:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:01:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=12.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=11.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.1 ms, state=CONNECTED}] -2016-05-02 16:01:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:01:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=12.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=9.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.1 ms, state=CONNECTED}] -2016-05-02 16:02:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:02:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:02:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:02:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=12.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=9.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.1 ms, state=CONNECTED}] -2016-05-02 16:02:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:02:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=10.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=9.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.1 ms, state=CONNECTED}] -2016-05-02 16:02:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:02:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=10.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=9.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.6 ms, state=CONNECTED}] -2016-05-02 16:02:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:02:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=10.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=8.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.6 ms, state=CONNECTED}] -2016-05-02 16:02:08 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2126448} -2016-05-02 16:02:08 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1854413}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:02:08 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:243894} -2016-05-02 16:02:08 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1540233} -2016-05-02 16:02:08 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1854413} -2016-05-02 16:02:08 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1854412} -2016-05-02 16:02:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:02:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:03:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:03:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:03:15 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION -2016-05-02 16:03:15 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:03:15 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:03:15 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION - SGVM_INTERPOLATION - An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare - - - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - - - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - - - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - - - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - - - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - - - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - - - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - - - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - - - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - - - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - - - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - - - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - - - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 16:03:15 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - InputFile - Input file in TACSAT format. E.g. http://goo.gl/i16kPw - Name of the parameter: InputFile. Input file in TACSAT format. E.g. http://goo.gl/i16kPw - - - - text/xml - - - - - text/xml - - - application/d4science - - - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - npoints - The number of pings or positions required between each real or actual vessel position or ping - Name of the parameter: npoints. The number of pings or positions required between each real or actual vessel position or ping - - - - 10 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - interval - Average time in minutes between two adjacent datapoints - Name of the parameter: interval. Average time in minutes between two adjacent datapoints - - - - 120 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - margin - Maximum deviation from specified interval to find adjacent datapoints (tolerance) - Name of the parameter: margin. Maximum deviation from specified interval to find adjacent datapoints (tolerance) - - - - 10 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - res - Number of points to use to create interpolation (including start and end point) - Name of the parameter: res. Number of points to use to create interpolation (including start and end point) - - - - 100 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - method - Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - Name of the parameter: method. Set to cHs for cubic Hermite spline or SL for Straight Line interpolation - - - - cHs - SL - - cHs - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - fm - The FM parameter in cubic interpolation - Name of the parameter: fm. The FM parameter in cubic interpolation - - - - 0.5 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - distscale - The DistScale parameter for cubic interpolation - Name of the parameter: distscale. The DistScale parameter for cubic interpolation - - - - 20 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - sigline - The Sigline parameter in cubic interpolation - Name of the parameter: sigline. The Sigline parameter in cubic interpolation - - - - 0.2 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - minspeedThr - A filter on the minimum speed to take into account for interpolation - Name of the parameter: minspeedThr. A filter on the minimum speed to take into account for interpolation - - - - 2 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - maxspeedThr - A filter on the maximum speed to take into account for interpolation - Name of the parameter: maxspeedThr. A filter on the maximum speed to take into account for interpolation - - - - 6 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - headingAdjustment - Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - Name of the parameter: headingAdjustment. Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. - - - - 0 - - -2016-05-02 16:03:15 DEBUG SClient4WPS:300 - WPSClient->Input: - equalDist - Whether the number of positions returned should be equally spaced or not - Name of the parameter: equalDist. Whether the number of positions returned should be equally spaced or not - - - - true - false - - true - - -2016-05-02 16:03:15 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 16:03:15 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 16:03:15 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:03:15 DEBUG WPS2SM:312 - Conversion to SM Type->InputFile is a Complex Input -2016-05-02 16:03:15 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 16:03:15 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 16:03:15 DEBUG WPS2SM:204 - Schema: null -2016-05-02 16:03:15 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Input file in TACSAT format. E.g. http://goo.gl/i16kPw -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:InputFile -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: FileParameter [mimeType=text/xml, value=null, name=InputFile, description=Input file in TACSAT format. E.g. http://goo.gl/i16kPw [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=FILE] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->npoints is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The number of pings or positions required between each real or actual vessel position or ping -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:npoints -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->interval is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 120 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Average time in minutes between two adjacent datapoints -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:interval -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->margin is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 10 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Maximum deviation from specified interval to find adjacent datapoints (tolerance) -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:margin -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->res is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 100 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Number of points to use to create interpolation (including start and end point) -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:res -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->method is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: cHs -2016-05-02 16:03:15 DEBUG WPS2SM:298 - ValueType[]:[cHs, SL] -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Set to cHs for cubic Hermite spline or SL for Straight Line interpolation -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:method -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->fm is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 0.5 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The FM parameter in cubic interpolation -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:fm -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->distscale is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 20 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The DistScale parameter for cubic interpolation -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:distscale -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->sigline is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 0.2 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:The Sigline parameter in cubic interpolation -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:sigline -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->minspeedThr is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 2 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:A filter on the minimum speed to take into account for interpolation -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:minspeedThr -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->maxspeedThr is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Double -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 6 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:A filter on the maximum speed to take into account for interpolation -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:maxspeedThr -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->headingAdjustment is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.Integer -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: 0 -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:headingAdjustment -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT] -2016-05-02 16:03:15 DEBUG WPS2SM:287 - Conversion to SM Type->equalDist is a Literal Input -2016-05-02 16:03:15 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:03:15 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:03:15 DEBUG WPS2SM:100 - Guessed default value: true -2016-05-02 16:03:15 DEBUG WPS2SM:298 - ValueType[]:[true, false] -2016-05-02 16:03:15 DEBUG WPS2SM:323 - Conversion to SM Type->Title:Whether the number of positions returned should be equally spaced or not -2016-05-02 16:03:15 DEBUG WPS2SM:324 - Conversion to SM Type->Name:equalDist -2016-05-02 16:03:15 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:03:15 DEBUG SClient4WPS:653 - InputParameter: Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM] -2016-05-02 16:03:15 DEBUG SClient4WPS:657 - Parameters: [FileParameter [mimeType=text/xml, value=null, name=InputFile, description=Input file in TACSAT format. E.g. http://goo.gl/i16kPw [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=FILE], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=npoints, description=The number of pings or positions required between each real or actual vessel position or ping [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=120, value=null, name=interval, description=Average time in minutes between two adjacent datapoints [Min N. of Entries:1; Max N. of Entries:1; default:120], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=10, value=null, name=margin, description=Maximum deviation from specified interval to find adjacent datapoints (tolerance) [Min N. of Entries:1; Max N. of Entries:1; default:10], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=100, value=null, name=res, description=Number of points to use to create interpolation (including start and end point) [Min N. of Entries:1; Max N. of Entries:1; default:100], typology=OBJECT], Parameter [name=method, description=Set to cHs for cubic Hermite spline or SL for Straight Line interpolation [Min N. of Entries:1; Max N. of Entries:1; default:cHs], typology=ENUM], ObjectParameter [type=java.lang.Double, defaultValue=0.5, value=null, name=fm, description=The FM parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.5], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=20, value=null, name=distscale, description=The DistScale parameter for cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:20], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=0.2, value=null, name=sigline, description=The Sigline parameter in cubic interpolation [Min N. of Entries:1; Max N. of Entries:1; default:0.2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=2, value=null, name=minspeedThr, description=A filter on the minimum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:2], typology=OBJECT], ObjectParameter [type=java.lang.Double, defaultValue=6, value=null, name=maxspeedThr, description=A filter on the maximum speed to take into account for interpolation [Min N. of Entries:1; Max N. of Entries:1; default:6], typology=OBJECT], ObjectParameter [type=java.lang.Integer, defaultValue=0, value=null, name=headingAdjustment, description=Parameter to adjust the choice of heading depending on its own or previous point (0 or 1). Set 1 in case the heading at the endpoint does not represent the heading of the arriving vessel to that point but the departing vessel. [Min N. of Entries:1; Max N. of Entries:1; default:0], typology=OBJECT], Parameter [name=equalDist, description=Whether the number of positions returned should be equally spaced or not [Min N. of Entries:1; Max N. of Entries:1; default:true], typology=ENUM]] -2016-05-02 16:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:03:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:03:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:03:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:03:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:15 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:03:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:03:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:03:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:03:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:03:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:03:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:03:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:03:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:03:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:03:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:03:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:03:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:03:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:03:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:03:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:03:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:03:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:03:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:03:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:03:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:03:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:03:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:03:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:03:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:03:16 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:03:16 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:03:16 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:03:16 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:03:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:03:16 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:03:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:03:16 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:03:16 INFO WorkspaceExplorerServiceImpl:142 - end time - 203 msc 0 sec -2016-05-02 16:03:16 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:03:26 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:03:26 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:03:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:26 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:03:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:03:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:03:26 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:03:26 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:03:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:03:26 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:03:26 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 16:03:26 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 16:03:26 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:03:26 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:03:26 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:03:26 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:03:26 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:03:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:03:26 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:03:26 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:03:26 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:03:26 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:03:26 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:03:26 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:26 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:26 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:26 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c10022a3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@184c5987, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3c89ba87, socketFactory=javax.net.DefaultSocketFactory@7635141d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:03:26 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:03:26 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:03:26 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:243983}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:03:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:03:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1337853, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:26 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:03:26 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:26 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:26 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1854508}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1334293, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:26 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:26 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2126534}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:03:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:03:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=936093, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:03:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:03:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:27 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1540319}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:03:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:03:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:03:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1146891, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-02 16:03:27 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1854509}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854509}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:27 DEBUG command:56 - Command execution completed -2016-05-02 16:03:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854509}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:27 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:03:27 DEBUG command:56 - Command execution completed -2016-05-02 16:03:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854509}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:27 DEBUG command:56 - Command execution completed -2016-05-02 16:03:27 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:03:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854509}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:27 DEBUG command:56 - Command execution completed -2016-05-02 16:03:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1854509}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:27 DEBUG command:56 - Command execution completed -2016-05-02 16:03:27 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1854509}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:27 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:03:27 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:03:27 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:03:27 INFO WorkspaceExplorerServiceImpl:188 - end time - 51 msc 0 sec -2016-05-02 16:03:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:03:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:03:28 DEBUG query:56 - Query completed -2016-05-02 16:03:28 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 16:03:28 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2126534} -2016-05-02 16:03:28 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:243983} -2016-05-02 16:03:28 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1540319} -2016-05-02 16:03:28 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1854509}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:03:28 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1854509} -2016-05-02 16:03:28 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:03:28 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:03:28 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:03:28 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 16:03:28 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1854508} -2016-05-02 16:03:28 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:03:28 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:03:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:03:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:28 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:03:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:03:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:29 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:03:29 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:03:29 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:03:29 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:03:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:03:29 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:03:29 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 16:03:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:03:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:03:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:03:29 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:03:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:03:29 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:03:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:03:29 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:03:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:03:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:03:29 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:03:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:03:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c10022a3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@184c5987, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3c89ba87, socketFactory=javax.net.DefaultSocketFactory@7635141d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:03:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:03:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:03:29 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:243985}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1554533, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:03:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:29 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1854511}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1464675, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:29 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2126535}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=764728, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:03:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:03:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:03:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:03:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:29 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:03:29 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:03:29 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1540320}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1314558, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 16:03:29 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1854512}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854512}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG command:56 - Command execution completed -2016-05-02 16:03:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854512}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG command:56 - Command execution completed -2016-05-02 16:03:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854512}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG command:56 - Command execution completed -2016-05-02 16:03:29 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:03:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854512}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG command:56 - Command execution completed -2016-05-02 16:03:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1854512}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 DEBUG command:56 - Command execution completed -2016-05-02 16:03:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1854512}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:29 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:03:29 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:03:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 46 msc 0 sec -2016-05-02 16:03:29 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:03:29 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:03:29 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:03:29 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:03:29 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:03:29 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:03:29 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:03:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:03:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:29 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:03:29 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:03:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:29 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:03:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:03:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:29 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:03:29 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:03:29 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:03:29 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 16:03:29 DEBUG query:56 - Query completed -2016-05-02 16:03:29 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 16:03:29 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2126535} -2016-05-02 16:03:29 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1854512}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:03:29 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1854512} -2016-05-02 16:03:29 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1854511} -2016-05-02 16:03:29 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1540320} -2016-05-02 16:03:29 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:243985} -2016-05-02 16:03:29 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:03:29 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:03:29 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:03:29 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 16:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:03:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:03:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:03:30 DEBUG DataMinerManagerServiceImpl:411 - GetPublicLink(): ItemDescription [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, owner=giancarlo.panichi, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, type=EXTERNAL_FILE, publicLink=null] -2016-05-02 16:03:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:30 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:03:30 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 16:03:30 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 16:03:30 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 16:03:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:03:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:03:30 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:03:30 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:03:30 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 16:03:30 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:03:30 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 16:03:30 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 16:03:30 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:03:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:03:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:03:30 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:03:30 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:03:30 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:03:30 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:03:30 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:30 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:30 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:30 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c10022a3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@184c5987, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3c89ba87, socketFactory=javax.net.DefaultSocketFactory@7635141d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:03:30 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:03:30 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:03:30 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:243986}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2530756, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:30 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:03:30 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:30 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:30 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2126536}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=810362, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:30 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1854513}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1384933, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:30 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:30 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1540321}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1901125, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:03:30 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1854514}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854514}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG command:56 - Command execution completed -2016-05-02 16:03:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854514}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG command:56 - Command execution completed -2016-05-02 16:03:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854514}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG command:56 - Command execution completed -2016-05-02 16:03:30 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:03:30 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:03:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854514}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG command:56 - Command execution completed -2016-05-02 16:03:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1854514}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG command:56 - Command execution completed -2016-05-02 16:03:30 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:03:30 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1854514}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:30 DEBUG query:56 - Query completed -2016-05-02 16:03:30 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:03:30 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2126536} -2016-05-02 16:03:30 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1540321} -2016-05-02 16:03:30 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:243986} -2016-05-02 16:03:30 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1854514}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:03:30 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1854514} -2016-05-02 16:03:30 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:03:30 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1854513} -2016-05-02 16:03:30 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:03:30 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:03:30 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:03:30 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:03:30 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 16:03:30 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:03:30 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:03:30 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:03:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:03:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:03:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:03:59 DEBUG DataMinerManagerServiceImpl:411 - GetPublicLink(): ItemDescription [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, owner=giancarlo.panichi, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, type=EXTERNAL_FILE, publicLink=null] -2016-05-02 16:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:03:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:03:59 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 16:03:59 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 16:03:59 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 16:03:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:03:59 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:03:59 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:03:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:03:59 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 16:03:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:03:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 16:03:59 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 16:03:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:03:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:03:59 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:03:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:03:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:03:59 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:03:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:03:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c10022a3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@184c5987, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3c89ba87, socketFactory=javax.net.DefaultSocketFactory@7635141d, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:03:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:03:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:03:59 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:243992}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1854520}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1183322, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:03:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1583897, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:03:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:59 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2126542}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=879720, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:03:59 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1540327}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1278433, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:03:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 16:03:59 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1854521}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG command:56 - Command execution completed -2016-05-02 16:03:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG command:56 - Command execution completed -2016-05-02 16:03:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG command:56 - Command execution completed -2016-05-02 16:03:59 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:03:59 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:03:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG command:56 - Command execution completed -2016-05-02 16:03:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1854521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG command:56 - Command execution completed -2016-05-02 16:03:59 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:03:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1854521}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:03:59 DEBUG query:56 - Query completed -2016-05-02 16:03:59 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:03:59 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2126542} -2016-05-02 16:03:59 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:243992} -2016-05-02 16:03:59 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1854521}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:03:59 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1540327} -2016-05-02 16:03:59 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1854521} -2016-05-02 16:03:59 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1854520} -2016-05-02 16:03:59 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:03:59 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:03:59 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:03:59 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:03:59 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:03:59 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 16:03:59 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:03:59 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:03:59 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:04:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:04:48 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:05:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:05:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:06:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:06:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:07:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:07:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:08:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:08:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:09:50 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 16:09:50 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 16:09:50 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 16:09:50 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:09:50 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:09:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:09:50 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:09:50 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@553030b2 -2016-05-02 16:09:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:09:50 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:09:50 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:09:50 DEBUG TemplateModel:83 - 2016-05-02 16:09:50, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:09:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:09:50 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 16:09:52 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:09:52 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:09:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:09:52 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:09:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:09:52 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:09:52 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:09:52 DEBUG TemplateModel:83 - 2016-05-02 16:09:52, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:09:52 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:09:52 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:09:52 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 118 ms -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 16:09:52 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 16:09:52 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 16:09:52 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:09:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:09:53 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@701068cd -2016-05-02 16:09:53 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@667fb59a -2016-05-02 16:09:53 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1fb6193a -2016-05-02 16:09:53 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@443eb932 -2016-05-02 16:09:53 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 113 ms -2016-05-02 16:09:53 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 16:09:53 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 16:09:53 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 16:09:53 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 16:09:53 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 16:09:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:09:53 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:09:53 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 16:09:53 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-05-02 16:09:53 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 16:09:53 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:09:53 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 16:09:53 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:09:53 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:09:53 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:09:53 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:09:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:09:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:09:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:09:53 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 16:09:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:09:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:09:53 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 16:09:53 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 16:09:53 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 16:09:53 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 16:09:53 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 16:09:53 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 16:09:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 16:09:53 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:09:53 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 16:09:53 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 27 ms -2016-05-02 16:09:53 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 16:09:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:09:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:09:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:09:53 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 16:09:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:09:53 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 16:09:54 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:09:54 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:09:54 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:09:54 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 16:09:54 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 16:09:54 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:09:54 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:09:54 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:09:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:09:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:09:54 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 16:09:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:09:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:09:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:09:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:09:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:09:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:09:54 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 16:09:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:09:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:09:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:09:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:09:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:09:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:09:54 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 16:09:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:09:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:09:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:09:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:09:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:09:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:09:54 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 16:09:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:09:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:09:56 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:09:56 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:09:56 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:09:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:09:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:09:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:09:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:09:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:09:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:09:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:09:56 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 16:09:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:09:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:09:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:09:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:09:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:09:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:09:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:09:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:09:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:09:56 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 16:09:56 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 16:09:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:09:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:09:56 INFO WorkspaceExplorerServiceImpl:188 - end time - 116 msc 0 sec -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:09:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:09:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:09:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:09:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:09:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:09:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:09:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:09:56 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 16:09:56 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 16:09:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:09:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:09:56 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:09:56 INFO WorkspaceExplorerServiceImpl:188 - end time - 148 msc 0 sec -2016-05-02 16:09:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:09:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:09:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:09:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:09:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 16:09:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-05-02 16:09:56 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 16:09:56 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 16:09:56 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 16:09:56 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:09:56 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:09:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:09:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:09:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:09:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:09:56 INFO WorkspaceExplorerServiceImpl:188 - end time - 400 msc 0 sec -2016-05-02 16:10:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:10:00 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:10:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:10:00 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 16:10:00 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:10:00 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:10:01 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 16:10:01 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 16:10:01 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 16:10:01 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 16:10:01 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 16:10:01 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 16:10:01 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:10:01 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 16:10:01 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 16:10:01 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 16:10:01 DEBUG WPS2SM:204 - Schema: null -2016-05-02 16:10:01 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 16:10:01 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:10:01 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 16:10:01 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 16:10:01 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 16:10:01 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 16:10:01 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 16:10:01 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 16:10:01 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 16:10:01 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 16:10:01 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:10:01 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 16:10:01 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 16:10:01 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:10:01 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:10:01 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 16:10:01 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:10:01 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 16:10:01 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 16:10:01 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 16:10:01 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 16:10:01 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 16:10:01 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 16:10:01 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 16:10:01 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 16:10:01 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:10:01 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 16:10:01 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:10:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:10:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:10:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:10:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:01 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:10:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:10:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:10:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:10:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:10:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:10:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:10:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:10:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:10:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:10:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:10:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:10:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:10:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:10:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:10:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:10:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:10:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:10:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:10:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:10:01 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:10:01 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:10:01 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:10:01 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:10:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:10:01 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:10:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:10:01 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:10:01 INFO WorkspaceExplorerServiceImpl:142 - end time - 227 msc 0 sec -2016-05-02 16:10:01 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:10:08 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:10:08 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:10:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:10:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:10:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:10:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:08 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:10:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:10:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:10:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:10:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:08 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:10:08 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:10:08 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:10:08 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:10:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:10:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:10:08 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 16:10:08 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 16:10:08 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:10:08 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:10:08 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:10:08 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:10:08 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:10:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:10:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:10:08 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:10:08 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:10:08 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:10:08 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:10:08 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:10:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:10:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:10:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:10:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:10:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:10:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:09 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:10:09 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:10:09 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:09 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:09 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c46a2cd9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2899028f, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@55770f1b, socketFactory=javax.net.DefaultSocketFactory@7b80e172, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:10:09 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:10:09 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:10:09 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:10:09 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:10:09 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:10:09 INFO WorkspaceExplorerServiceImpl:188 - end time - 62 msc 0 sec -2016-05-02 16:10:09 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:244056}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1464681, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:09 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:10:09 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:09 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:10:09 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:09 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:10:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:09 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:2126603}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1854582}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=985143, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1886592, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:09 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:09 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:1540388}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1728094, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:10:09 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854583}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854583}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG command:56 - Command execution completed -2016-05-02 16:10:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854583}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG command:56 - Command execution completed -2016-05-02 16:10:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854583}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG command:56 - Command execution completed -2016-05-02 16:10:09 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:10:09 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854583}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG command:56 - Command execution completed -2016-05-02 16:10:09 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854583}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG command:56 - Command execution completed -2016-05-02 16:10:09 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854583}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:10:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:10:10 DEBUG query:56 - Query completed -2016-05-02 16:10:10 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 16:10:10 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:2126603} -2016-05-02 16:10:10 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:244056} -2016-05-02 16:10:10 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854583}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:10:10 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:1540388} -2016-05-02 16:10:10 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854583} -2016-05-02 16:10:10 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1854582} -2016-05-02 16:10:10 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:10:10 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:10:10 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:10:10 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 16:10:10 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:10:10 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:10:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:10:10 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:10:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:10:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:10 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:10:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:10:10 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:10:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:10:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:10 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:10:10 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:10:10 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:10:10 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:10:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:10:10 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:10:10 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 16:10:10 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:10:10 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:10:10 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:10:10 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:10:10 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:10:10 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:10:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:10:10 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:10:10 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:10:10 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:10:10 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:10:10 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:10:10 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:10 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:10 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:10 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c46a2cd9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2899028f, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@55770f1b, socketFactory=javax.net.DefaultSocketFactory@7b80e172, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:10:10 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:10:10 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:10:10 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244057}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1212505, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:10 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:10:10 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:10 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:10 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126604}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854584}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1133358, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=13177609, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:10 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=13.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:10:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:10:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:10:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:10 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540390}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:10 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1787701, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=13.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:10:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:10:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:10:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:10:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:10 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:10:10 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:10:10 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854585}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854585}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG command:56 - Command execution completed -2016-05-02 16:10:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854585}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG command:56 - Command execution completed -2016-05-02 16:10:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854585}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG command:56 - Command execution completed -2016-05-02 16:10:10 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:10:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854585}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG command:56 - Command execution completed -2016-05-02 16:10:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854585}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG command:56 - Command execution completed -2016-05-02 16:10:10 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854585}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:10:10 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:10:10 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-02 16:10:10 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:10:10 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:10:10 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:10:10 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:10:10 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:10:10 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=13.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:10:10 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=13.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:10:11 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:10:11 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:10:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:10:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:10:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:10:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:11 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:10:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:10:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:10:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:10:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:11 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:10:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:10:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:10:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:10:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:11 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:10:11 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:10:11 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:10:11 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 16:10:11 DEBUG query:56 - Query completed -2016-05-02 16:10:11 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 16:10:11 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126604} -2016-05-02 16:10:11 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244057} -2016-05-02 16:10:11 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540390} -2016-05-02 16:10:11 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854585}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:10:11 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854585} -2016-05-02 16:10:11 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:10:11 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854584} -2016-05-02 16:10:11 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:10:11 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:10:11 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 16:10:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:10:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:10:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:10:12 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 16:10:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:12 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:10:12 DEBUG ServiceEngine:193 - get() - start -2016-05-02 16:10:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:10:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:10:12 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:10:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:10:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:10:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:10:12 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 16:10:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:10:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:10:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:10:12 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:10:12 DEBUG Operation:173 - get(String) - start -2016-05-02 16:10:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:10:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:10:12 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:10:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:10:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c46a2cd9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2899028f, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@55770f1b, socketFactory=javax.net.DefaultSocketFactory@7b80e172, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:10:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:10:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854586}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1428741, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:10:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126606}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=981145, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244058}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1419043, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540391}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1413808, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854587}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:10:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:10:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:10:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG query:56 - Query completed -2016-05-02 16:10:12 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:10:12 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:10:12 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 16:10:12 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG update:56 - Update completed -2016-05-02 16:10:12 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1854587}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG query:56 - Query completed -2016-05-02 16:10:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:10:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:10:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:10:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:10:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:10:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:10:12 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:10:12 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 16:10:12 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 16:10:12 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 16:10:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:10:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:10:12 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:10:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:10:12 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 16:10:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:10:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 16:10:12 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 16:10:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:10:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:10:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:10:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:10:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:10:12 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:10:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:10:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@c46a2cd9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2899028f, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@55770f1b, socketFactory=javax.net.DefaultSocketFactory@7b80e172, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:10:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:10:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854588}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1209432, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:10:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:10:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244059}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1303328, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126607}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1164593, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540394}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1488428, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:10:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:10:12 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854589}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854589}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854589}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854589}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:10:12 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:10:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854589}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854589}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG command:56 - Command execution completed -2016-05-02 16:10:12 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:10:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854589}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:12 DEBUG query:56 - Query completed -2016-05-02 16:10:12 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:10:12 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126607} -2016-05-02 16:10:12 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244059} -2016-05-02 16:10:12 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854589}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:10:12 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540394} -2016-05-02 16:10:12 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854589} -2016-05-02 16:10:12 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:10:12 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854588} -2016-05-02 16:10:12 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:10:12 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:10:12 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:10:12 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:10:12 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 16:10:12 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:10:12 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:10:12 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:10:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:10:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:10:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:10:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:10:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:10:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:10:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:10:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:14:31 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 16:14:31 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 16:14:31 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 16:14:31 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:14:31 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:14:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:14:31 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:14:31 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@451e647d -2016-05-02 16:14:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:14:31 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:14:31 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:14:31 DEBUG TemplateModel:83 - 2016-05-02 16:14:31, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:14:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:14:31 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 16:14:34 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:14:34 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:14:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:14:34 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:14:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:14:34 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:14:34 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:14:34 DEBUG TemplateModel:83 - 2016-05-02 16:14:34, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:14:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:14:34 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:14:34 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 125 ms -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 16:14:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 16:14:34 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 16:14:34 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:14:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:14:35 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@1ec2117c -2016-05-02 16:14:35 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3cd5083c -2016-05-02 16:14:35 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@3806ab2 -2016-05-02 16:14:35 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@712cee1c -2016-05-02 16:14:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 237 ms -2016-05-02 16:14:35 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 16:14:35 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 16:14:35 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 16:14:35 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 16:14:35 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 16:14:35 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:14:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:14:35 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:14:35 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:14:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:14:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:14:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:14:35 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 16:14:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:14:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 16:14:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-02 16:14:35 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 16:14:35 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:14:35 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 16:14:35 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:14:35 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 16:14:35 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 16:14:35 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 16:14:35 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 16:14:35 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 16:14:35 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 16:14:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 16:14:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:14:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 16:14:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 20 ms -2016-05-02 16:14:36 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 16:14:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:14:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:36 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 16:14:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:36 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 16:14:36 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:14:36 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:14:36 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 16:14:36 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:14:36 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 16:14:36 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:14:36 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:14:36 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 16:14:36 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 16:14:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:36 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:14:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 16:14:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:37 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:14:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 16:14:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:37 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:14:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 16:14:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:37 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:14:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 16:14:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:38 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:14:38 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:14:38 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:14:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:14:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:38 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 16:14:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:14:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:14:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:38 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 16:14:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:14:38 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:14:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:38 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 16:14:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:38 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 16:14:38 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 16:14:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:38 INFO WorkspaceExplorerServiceImpl:188 - end time - 206 msc 0 sec -2016-05-02 16:14:38 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 16:14:38 INFO WorkspaceExplorerServiceImpl:188 - end time - 136 msc 0 sec -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:14:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:14:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:14:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:14:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:14:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 16:14:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 16:14:38 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 16:14:38 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 16:14:38 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 16:14:38 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:14:38 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:14:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:14:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:14:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 35 ms -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 16:14:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:14:38 INFO WorkspaceExplorerServiceImpl:188 - end time - 437 msc 0 sec -2016-05-02 16:14:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:14:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:14:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:14:42 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 16:14:42 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:14:42 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:14:43 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 16:14:43 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 16:14:43 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 16:14:43 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 16:14:43 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 16:14:43 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 16:14:43 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:14:43 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 16:14:43 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 16:14:43 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 16:14:43 DEBUG WPS2SM:204 - Schema: null -2016-05-02 16:14:43 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 16:14:43 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:14:43 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 16:14:43 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 16:14:43 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 16:14:43 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 16:14:43 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 16:14:43 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 16:14:43 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 16:14:43 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 16:14:43 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:14:43 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 16:14:43 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 16:14:43 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:14:43 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:14:43 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 16:14:43 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:14:43 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 16:14:43 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 16:14:43 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 16:14:43 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 16:14:43 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 16:14:43 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 16:14:43 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 16:14:43 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 16:14:43 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:14:43 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 16:14:43 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:14:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:14:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:14:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:14:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:14:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:14:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:14:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:14:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:14:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:14:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:14:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:14:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:14:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:14:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 230 msc 0 sec -2016-05-02 16:14:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:14:50 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:14:50 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:14:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:14:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:14:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:14:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:50 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:14:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:14:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:14:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:14:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:14:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:14:50 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:14:50 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:14:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:14:50 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:14:50 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 16:14:50 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 16:14:50 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:14:50 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:14:50 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:14:50 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:14:50 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:14:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:14:50 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:14:50 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:14:50 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:14:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:14:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:14:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:14:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:14:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:14:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:14:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:50 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:14:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:14:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:14:50 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:14:50 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:14:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:14:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:51 INFO WorkspaceExplorerServiceImpl:188 - end time - 84 msc 0 sec -2016-05-02 16:14:51 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:14:51 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:14:51 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:14:51 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:51 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@96f9433e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@8291fd8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@43e9a217, socketFactory=javax.net.DefaultSocketFactory@1f90b6d6, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:14:51 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:14:51 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1854637}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:244106}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1426918, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1702141, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:14:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126656}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1050572, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540440}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1341336, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854638}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854638}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854638}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854638}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:14:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854638}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854638}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854638}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:14:51 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:14:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:14:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:14:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:14:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:51 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:14:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:14:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:14:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:14:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:51 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:14:51 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:14:51 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:14:51 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:14:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:14:51 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:14:51 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 16:14:51 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:14:51 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:14:51 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:14:51 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:14:51 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:14:51 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:14:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:14:51 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:14:51 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:14:51 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:14:51 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:14:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:14:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:51 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:51 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@96f9433e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@8291fd8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@43e9a217, socketFactory=javax.net.DefaultSocketFactory@1f90b6d6, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:14:51 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:14:51 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854640}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1586526, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:14:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244107}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1699204, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126657}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=987671, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854642}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854642}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540441}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854642}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1158774, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854642}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:14:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854642}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:14:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:14:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:14:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:14:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:14:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:14:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854642}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:51 DEBUG command:56 - Command execution completed -2016-05-02 16:14:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854642}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:51 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:14:51 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:14:51 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:14:51 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:14:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 53 msc 0 sec -2016-05-02 16:14:52 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:14:52 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:14:52 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:14:52 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:14:52 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:14:52 DEBUG query:56 - Query completed -2016-05-02 16:14:52 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126656} -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:244106} -2016-05-02 16:14:52 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854638}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854638} -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540440} -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1854637} -2016-05-02 16:14:52 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:14:52 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:14:52 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:14:52 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 16:14:52 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:14:52 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:14:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:52 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:14:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:52 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:14:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:14:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:14:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:52 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:14:52 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:14:52 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:14:52 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 16:14:52 DEBUG query:56 - Query completed -2016-05-02 16:14:52 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126657} -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244107} -2016-05-02 16:14:52 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854642}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540441} -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854642} -2016-05-02 16:14:52 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854640} -2016-05-02 16:14:52 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:14:52 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:14:52 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:14:52 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 16:14:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:14:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:14:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:14:53 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 16:14:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:53 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:14:54 DEBUG ServiceEngine:193 - get() - start -2016-05-02 16:14:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:14:54 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:14:54 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:14:54 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:14:54 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:14:54 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:14:54 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 16:14:54 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:14:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:14:54 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:14:54 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:14:54 DEBUG Operation:173 - get(String) - start -2016-05-02 16:14:54 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:14:54 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:14:54 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:14:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:14:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@96f9433e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@8291fd8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@43e9a217, socketFactory=javax.net.DefaultSocketFactory@1f90b6d6, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:14:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:14:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244108}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1177332, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:14:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126658}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854643}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=927774, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1462542, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540443}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1852183, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854644}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:14:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG query:56 - Query completed -2016-05-02 16:14:54 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:14:54 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:14:54 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 16:14:54 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG update:56 - Update completed -2016-05-02 16:14:54 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1854644}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG query:56 - Query completed -2016-05-02 16:14:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:14:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:14:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:14:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:14:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:14:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:14:54 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:14:54 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 16:14:54 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 16:14:54 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 16:14:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:14:54 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:14:54 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:14:54 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:14:54 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 16:14:54 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:14:54 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 16:14:54 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 16:14:54 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:14:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:14:54 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:14:54 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:14:54 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:14:54 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:14:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:14:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@96f9433e, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@8291fd8, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@43e9a217, socketFactory=javax.net.DefaultSocketFactory@1f90b6d6, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:14:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:14:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244109}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854645}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1062219, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:14:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1427002, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126659}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=828231, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540444}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1269501, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 16:14:54 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854646}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854646}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854646}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854646}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:14:54 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854646}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854646}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG command:56 - Command execution completed -2016-05-02 16:14:54 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:14:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854646}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG query:56 - Query completed -2016-05-02 16:14:54 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:14:54 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126659} -2016-05-02 16:14:54 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244109} -2016-05-02 16:14:54 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854646}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:14:54 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854646} -2016-05-02 16:14:54 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540444} -2016-05-02 16:14:54 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:14:54 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854645} -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:14:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:14:54 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:14:54 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:14:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:14:54 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:14:54 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 16:14:54 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:14:54 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:14:54 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:15:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:15:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:15:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:15:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:15:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:15:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:15:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:15:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:15:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:15:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:15:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:15:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:15:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:15:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:15:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:15:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:15:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:15:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:15:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:15:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:15:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:15:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:15:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:15:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:15:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:15:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:15:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:15:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:15:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:15:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:15:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:15:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:15:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:15:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:16:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:16:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:16:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:16:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:16:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:16:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:16:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:16:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:16:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:16:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:16:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:16:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:16:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:16:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:16:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:16:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:16:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:16:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:16:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:16:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:16:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:16:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:16:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:16:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:16:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:16:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:16:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:16:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:16:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:16:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:16:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:16:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:16:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:16:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:16:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:16:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:16:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:17:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:17:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:17:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:17:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:17:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:17:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:17:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:17:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:17:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:17:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:17:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:17:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:17:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:17:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:17:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:17:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:17:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:17:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:17:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:17:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:17:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:17:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:17:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:17:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:17:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:17:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:17:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:17:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:17:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:17:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:17:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:17:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:17:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:17:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:17:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:17:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:17:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:18:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:18:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:18:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:18:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:18:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:18:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:18:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:18:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:18:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:18:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:18:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:18:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:18:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:18:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:18:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:18:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:18:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:18:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:18:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:18:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:18:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:18:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:18:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:18:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:18:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:18:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:18:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:18:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:18:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:18:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:18:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:18:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:18:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:18:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:18:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:18:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:18:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:18:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:18:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:19:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:19:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:19:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:19:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:19:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:19:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:19:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:19:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:19:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:19:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:19:07 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2126658} -2016-05-02 16:19:07 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1854644}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:19:07 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1854644} -2016-05-02 16:19:07 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1540443} -2016-05-02 16:19:07 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:244108} -2016-05-02 16:19:07 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1854643} -2016-05-02 16:20:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:20:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:20:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:20:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:21:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:21:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:22:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:22:46 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:23:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:23:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:24:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:24:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:25:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:25:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:26:25 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 16:26:25 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 16:26:25 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 16:26:25 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:26:25 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:26:25 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:26:25 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:26:25 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@35ea693d -2016-05-02 16:26:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:25 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:26:25 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:26:25 DEBUG TemplateModel:83 - 2016-05-02 16:26:25, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:26:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:26:25 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 16:26:28 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:26:28 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:26:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:26:28 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:26:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:28 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:26:28 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:26:28 DEBUG TemplateModel:83 - 2016-05-02 16:26:28, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:26:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:26:28 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:26:28 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 115 ms -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 16:26:28 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 16:26:28 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 16:26:28 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:26:28 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:26:28 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@635b0fe6 -2016-05-02 16:26:28 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3cd75d96 -2016-05-02 16:26:28 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@7d327014 -2016-05-02 16:26:28 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4b0175d0 -2016-05-02 16:26:28 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 107 ms -2016-05-02 16:26:28 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 16:26:28 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 16:26:28 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 16:26:28 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 16:26:28 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 16:26:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:28 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:26:28 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 16:26:28 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 50 ms -2016-05-02 16:26:28 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 16:26:28 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:26:28 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 16:26:28 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:26:29 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:26:29 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:26:29 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:26:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:29 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:26:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:26:29 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 16:26:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:29 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 16:26:29 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 16:26:29 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 16:26:29 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 16:26:29 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 16:26:29 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 16:26:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 16:26:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:26:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 16:26:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 16:26:29 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 16:26:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:29 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 16:26:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:29 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 16:26:29 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:26:29 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:26:29 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 16:26:29 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:26:29 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 16:26:29 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:26:29 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:26:29 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 16:26:29 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 16:26:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:29 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:26:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 16:26:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:30 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:26:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 16:26:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:30 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:26:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 16:26:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:30 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:26:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 16:26:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:31 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:26:31 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:26:31 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:26:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:26:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:26:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:26:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:31 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 16:26:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:26:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:31 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 16:26:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:31 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 16:26:31 INFO WorkspaceExplorerServiceImpl:188 - end time - 114 msc 0 sec -2016-05-02 16:26:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:26:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:31 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 16:26:31 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 16:26:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:31 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 16:26:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 16:26:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:31 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:26:31 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:26:31 INFO WorkspaceExplorerServiceImpl:188 - end time - 153 msc 0 sec -2016-05-02 16:26:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 49 ms -2016-05-02 16:26:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 16:26:31 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:26:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 16:26:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-05-02 16:26:32 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 16:26:32 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 16:26:32 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 16:26:32 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 16:26:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 16:26:32 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 16:26:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 16:26:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:26:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:26:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 16:26:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 16:26:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 16:26:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 16:26:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:32 INFO WorkspaceExplorerServiceImpl:188 - end time - 378 msc 0 sec -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:26:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:26:35 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 16:26:35 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:26:35 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:26:35 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 16:26:35 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 16:26:35 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 16:26:35 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 16:26:35 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 16:26:35 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 16:26:35 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:26:35 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 16:26:35 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 16:26:35 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 16:26:35 DEBUG WPS2SM:204 - Schema: null -2016-05-02 16:26:35 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 16:26:35 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:26:35 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 16:26:35 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 16:26:35 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 16:26:35 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 16:26:35 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 16:26:35 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 16:26:35 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 16:26:35 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 16:26:35 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:26:35 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 16:26:35 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 16:26:35 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:26:35 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:26:35 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 16:26:35 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:26:35 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 16:26:35 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 16:26:35 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 16:26:35 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 16:26:35 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 16:26:35 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 16:26:35 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 16:26:35 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 16:26:35 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:26:35 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 16:26:35 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:26:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:26:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:26:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:26:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:26:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:26:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:26:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:35 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:35 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:26:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:26:36 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:26:36 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:26:36 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:26:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:26:36 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:26:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:26:36 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:26:36 INFO WorkspaceExplorerServiceImpl:142 - end time - 250 msc 0 sec -2016-05-02 16:26:36 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:26:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:26:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:26:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:26:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:26:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:26:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:26:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:26:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:26:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:26:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:26:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:26:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:26:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:26:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:26:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:26:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 181 msc 0 sec -2016-05-02 16:26:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:26:45 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:26:45 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:26:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:45 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:26:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:26:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:45 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:26:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:45 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:26:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:45 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:26:45 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:26:45 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:26:45 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:26:45 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:26:45 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:26:45 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 16:26:45 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 16:26:45 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:26:45 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:26:45 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:26:45 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:26:45 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:26:45 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:26:45 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:26:45 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:26:45 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:26:45 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:26:45 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:26:45 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:45 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:45 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:45 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@651998b2, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@79ee98a7, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1f683a7b, socketFactory=javax.net.DefaultSocketFactory@73d77158, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:26:45 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:26:45 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:26:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:26:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:26:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:26:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:26:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:45 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:244229}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:26:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:26:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1794729, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:45 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:26:45 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:45 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1854763}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:45 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:45 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1639850, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:45 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:45 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126779}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:26:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:26:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1046970, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:45 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540564}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:26:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:26:45 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1431281, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:26:46 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854764}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854764}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:46 DEBUG command:56 - Command execution completed -2016-05-02 16:26:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854764}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:46 DEBUG command:56 - Command execution completed -2016-05-02 16:26:46 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854764}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:46 DEBUG command:56 - Command execution completed -2016-05-02 16:26:46 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:26:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854764}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:46 DEBUG command:56 - Command execution completed -2016-05-02 16:26:46 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854764}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:46 DEBUG command:56 - Command execution completed -2016-05-02 16:26:46 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854764}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:46 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:26:46 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:26:46 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:26:46 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:26:46 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:26:46 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:26:46 DEBUG query:56 - Query completed -2016-05-02 16:26:46 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 16:26:46 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126779} -2016-05-02 16:26:46 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540564} -2016-05-02 16:26:46 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:244229} -2016-05-02 16:26:46 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854764}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:26:46 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854764} -2016-05-02 16:26:46 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1854763} -2016-05-02 16:26:46 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:26:46 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:26:46 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:26:46 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 16:26:46 INFO WorkspaceExplorerServiceImpl:188 - end time - 55 msc 0 sec -2016-05-02 16:26:46 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:26:46 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:26:46 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:26:47 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:26:47 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:26:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:26:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:26:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:26:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:47 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:26:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:26:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:26:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:26:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:47 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:26:47 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:26:47 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:26:47 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:26:47 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:26:47 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:26:47 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 16:26:47 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:26:47 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:26:47 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:26:47 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:26:47 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:26:47 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:26:47 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:26:47 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:26:47 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:26:47 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:26:47 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:26:47 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:26:47 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:47 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:47 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:47 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@651998b2, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@79ee98a7, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1f683a7b, socketFactory=javax.net.DefaultSocketFactory@73d77158, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:26:47 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:26:47 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:26:47 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854765}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2038725, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:47 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:26:47 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:47 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:47 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:47 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126781}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1229710, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:47 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244231}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1483056, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:47 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540565}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2558049, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}] -2016-05-02 16:26:47 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854766}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854766}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG command:56 - Command execution completed -2016-05-02 16:26:47 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854766}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG command:56 - Command execution completed -2016-05-02 16:26:47 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854766}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG command:56 - Command execution completed -2016-05-02 16:26:47 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:26:47 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854766}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG command:56 - Command execution completed -2016-05-02 16:26:47 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854766}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:47 DEBUG command:56 - Command execution completed -2016-05-02 16:26:47 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854766}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:48 DEBUG query:56 - Query completed -2016-05-02 16:26:48 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 16:26:48 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126781} -2016-05-02 16:26:48 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540565} -2016-05-02 16:26:48 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854766}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:26:48 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244231} -2016-05-02 16:26:48 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854766} -2016-05-02 16:26:48 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854765} -2016-05-02 16:26:48 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:26:48 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:26:48 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:26:48 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 16:26:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:26:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:26:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:26:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:26:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:26:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:26:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:26:49 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:26:49 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:26:49 INFO WorkspaceExplorerServiceImpl:188 - end time - 43 msc 0 sec -2016-05-02 16:26:49 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:26:49 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:26:49 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:26:49 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:26:49 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:26:50 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:26:50 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:26:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:26:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:26:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:26:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:50 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:26:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:26:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:26:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:50 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:26:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:26:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:26:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:26:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:26:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:26:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:26:50 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 16:26:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:26:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:26:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:26:50 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 16:26:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:26:50 DEBUG ServiceEngine:193 - get() - start -2016-05-02 16:26:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:26:50 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:26:50 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:26:50 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:26:50 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:26:50 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:26:50 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 16:26:50 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:26:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:26:50 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:26:50 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:26:50 DEBUG Operation:173 - get(String) - start -2016-05-02 16:26:50 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:26:50 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:26:50 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:26:50 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:26:50 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:50 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:50 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:50 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@651998b2, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@79ee98a7, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1f683a7b, socketFactory=javax.net.DefaultSocketFactory@73d77158, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:26:50 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:26:50 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:26:50 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244232}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:26:50 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854768}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:50 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:50 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:26:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1826294, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:50 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:26:50 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2747908, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:50 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:50 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:50 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126782}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:26:50 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:26:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=875638, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:51 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540566}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1916115, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:26:51 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854769}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:26:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:26:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:26:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG query:56 - Query completed -2016-05-02 16:26:51 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:26:51 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:26:51 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 16:26:51 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG update:56 - Update completed -2016-05-02 16:26:51 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1854769}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG query:56 - Query completed -2016-05-02 16:26:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:26:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:26:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:26:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:26:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:26:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:26:51 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:26:51 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 16:26:51 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 16:26:51 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 16:26:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:26:51 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:26:51 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:26:51 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:26:51 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 16:26:51 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:26:51 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 16:26:51 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 16:26:51 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:26:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:26:51 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:26:51 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:26:51 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:26:51 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:26:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:26:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:51 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:51 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:51 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@651998b2, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@79ee98a7, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@1f683a7b, socketFactory=javax.net.DefaultSocketFactory@73d77158, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:26:51 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:26:51 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:26:51 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244233}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1224786, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:51 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:26:51 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:51 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:26:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:51 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854771}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1240827, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:51 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:51 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126783}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=879886, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:26:51 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540567}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1275085, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:26:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 16:26:51 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854772}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:26:51 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:26:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG command:56 - Command execution completed -2016-05-02 16:26:51 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:26:51 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:26:51 DEBUG query:56 - Query completed -2016-05-02 16:26:51 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:26:51 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126783} -2016-05-02 16:26:51 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244233} -2016-05-02 16:26:51 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854772}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:26:51 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540567} -2016-05-02 16:26:51 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854772} -2016-05-02 16:26:51 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854771} -2016-05-02 16:26:51 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:26:51 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:26:51 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:26:51 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:26:51 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:26:51 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 16:26:51 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:26:51 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:26:51 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:27:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:27:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:27:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:27:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:27:00 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:27:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:27:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:27:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:27:10 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:27:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:27:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:27:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:27:10 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:27:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:27:11 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:27:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:27:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:27:20 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:27:20 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:27:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:20 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:27:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:27:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:27:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:27:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:27:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:27:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:27:40 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:27:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:40 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:27:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:41 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:27:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:50 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:27:50 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:27:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:50 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:27:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:27:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:27:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:28:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:28:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:28:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:28:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:28:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:28:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:28:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:28:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:28:11 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:28:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:28:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:11 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:28:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:28:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:28:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:28:21 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:28:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:28:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:28:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:28:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:28:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:28:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:28:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:28:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:28:41 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:28:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:41 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:28:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:28:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:28:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:28:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:28:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:28:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:29:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:29:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:29:01 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:29:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:29:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:29:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:29:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:29:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:29:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:29:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:29:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:29:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:29:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:29:11 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:29:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:29:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:29:11 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:29:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:29:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:29:21 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:29:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:29:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:29:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:29:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:29:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:29:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:29:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:29:41 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:29:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:41 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:29:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:29:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:29:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:29:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:29:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:29:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:30:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:30:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:30:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:30:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:30:01 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:30:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:30:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:30:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:30:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:30:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:30:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:30:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:30:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:30:11 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:30:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:30:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:30:11 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:30:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:30:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:30:21 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:30:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:30:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:30:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:30:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:30:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:30:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:30:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:30:41 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:30:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:41 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:30:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:30:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:30:51 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:30:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:30:51 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:30:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:31:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:31:00 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:31:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:31:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:31:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:31:01 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:31:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:31:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:31:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:31:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:31:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:31:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:31:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:31:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:31:11 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:31:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:31:11 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:31:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:31:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:31:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:31:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:31:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:31:21 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:31:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:31:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:31:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:31:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:31:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:31:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:31:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:31:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:31:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:31:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:31:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:31:39 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2126782} -2016-05-02 16:31:39 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1854769}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:31:39 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1854769} -2016-05-02 16:31:39 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1540566} -2016-05-02 16:31:39 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:244232} -2016-05-02 16:31:39 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1854768} -2016-05-02 16:31:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:31:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:31:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:31:43 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 16:31:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:31:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:31:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:31:45 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:31:45 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:31:45 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 16:31:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:31:46 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:31:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:31:46 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 16:31:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:46 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 16:31:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:46 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 16:31:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:46 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 16:31:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:46 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 16:31:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:31:46 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:31:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:31:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:46 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 16:31:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:47 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 16:31:47 INFO WorkspaceExplorerServiceImpl:188 - end time - 72 msc 0 sec -2016-05-02 16:31:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:31:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:31:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:31:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:47 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 16:31:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:47 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 16:31:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:31:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:31:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:31:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:47 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 16:31:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:47 INFO WorkspaceExplorerServiceImpl:188 - end time - 191 msc 0 sec -2016-05-02 16:31:49 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 16:31:49 INFO WorkspaceExplorerServiceImpl:188 - end time - 2026 msc 2 sec -2016-05-02 16:31:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:31:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:31:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:31:55 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 16:31:55 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 16:31:55 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 16:31:55 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 16:31:55 DEBUG WPS2SM:204 - Schema: null -2016-05-02 16:31:55 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 16:31:55 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:31:55 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 16:31:55 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 16:31:55 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 16:31:55 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 16:31:55 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 16:31:55 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 16:31:55 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 16:31:55 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 16:31:55 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:31:55 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 16:31:55 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 16:31:55 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:31:55 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:31:55 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 16:31:55 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:31:55 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 16:31:55 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 16:31:55 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 16:31:55 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 16:31:55 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 16:31:55 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 16:31:55 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 16:31:55 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 16:31:55 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:31:55 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 16:31:55 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 16:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:31:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:31:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:31:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:31:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:57 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:31:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:31:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:31:57 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:31:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:31:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:31:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:31:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:31:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:31:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:31:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:31:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:31:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:31:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:31:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:31:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:31:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:31:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:31:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:31:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:32:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:32:02 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:32:02 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:32:02 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:32:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:32:02 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:32:02 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:32:02 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:32:02 INFO WorkspaceExplorerServiceImpl:142 - end time - 4287 msc 4 sec -2016-05-02 16:32:02 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:32:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:32:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:34:38 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 16:34:38 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 16:34:38 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 16:34:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:34:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:34:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:34:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:34:38 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@553030b2 -2016-05-02 16:34:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:34:38 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:34:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:34:38 DEBUG TemplateModel:83 - 2016-05-02 16:34:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:34:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:34:38 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 16:34:40 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:34:40 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:34:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:34:40 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:34:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:34:40 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:34:40 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:34:40 DEBUG TemplateModel:83 - 2016-05-02 16:34:40, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:34:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:34:40 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:34:40 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 113 ms -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 16:34:40 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 16:34:40 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 16:34:40 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:34:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:34:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@4d2ebd89 -2016-05-02 16:34:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@54ed80e5 -2016-05-02 16:34:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1688f9de -2016-05-02 16:34:40 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@38da131d -2016-05-02 16:34:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 108 ms -2016-05-02 16:34:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 16:34:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 16:34:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 16:34:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 16:34:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:34:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:34:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 16:34:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-02 16:34:41 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 16:34:41 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:34:41 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 16:34:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:34:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:34:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:34:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:34:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:34:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:34:41 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 16:34:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:41 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 16:34:41 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 16:34:41 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 16:34:41 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 16:34:41 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 16:34:41 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 16:34:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:34:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 16:34:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 23 ms -2016-05-02 16:34:41 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 16:34:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:34:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:41 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 16:34:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:41 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 16:34:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:34:42 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:34:42 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 16:34:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:34:42 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 16:34:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:34:42 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:34:42 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:34:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 16:34:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:34:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 16:34:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:34:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 16:34:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:34:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 16:34:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:34:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:34:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:34:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:34:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:44 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 16:34:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:34:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:34:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:44 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 16:34:44 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 16:34:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 114 msc 0 sec -2016-05-02 16:34:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:34:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:34:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:44 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 16:34:44 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 16:34:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:44 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:34:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:34:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:34:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 127 msc 0 sec -2016-05-02 16:34:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 21 ms -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 16:34:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:34:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 16:34:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 16:34:44 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 16:34:44 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 16:34:44 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 16:34:44 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 16:34:44 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 16:34:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:34:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:34:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 16:34:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:34:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 350 msc 0 sec -2016-05-02 16:34:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:34:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:34:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:34:50 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 16:34:50 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:34:50 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:34:51 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 16:34:51 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 16:34:51 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 16:34:51 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 16:34:51 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 16:34:51 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 16:34:51 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:34:51 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 16:34:51 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 16:34:51 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 16:34:51 DEBUG WPS2SM:204 - Schema: null -2016-05-02 16:34:51 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 16:34:51 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:34:51 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 16:34:51 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 16:34:51 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 16:34:51 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 16:34:51 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 16:34:51 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 16:34:51 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 16:34:51 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 16:34:51 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:34:51 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 16:34:51 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 16:34:51 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:34:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:34:51 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 16:34:51 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:34:51 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 16:34:51 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 16:34:51 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 16:34:51 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 16:34:51 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 16:34:51 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 16:34:51 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 16:34:51 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 16:34:51 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:34:51 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 16:34:51 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:34:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:34:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:34:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:34:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:34:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:34:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:34:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:34:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:34:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:34:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:34:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:34:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:34:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:34:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:34:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:34:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:34:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:34:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:34:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:34:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:34:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:34:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:34:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:34:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 225 msc 0 sec -2016-05-02 16:34:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:34:59 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:34:59 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:34:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:34:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:34:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:34:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:59 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:34:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:34:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:34:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:34:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:59 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:34:59 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:34:59 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:34:59 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:34:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:34:59 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:34:59 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 16:34:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 16:34:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:34:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:34:59 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:34:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:34:59 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:34:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:34:59 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:34:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:34:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:34:59 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:34:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:34:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:34:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:34:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:34:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:34:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:34:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:34:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:34:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:34:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:34:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:34:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:34:59 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:34:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:34:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:34:59 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:34:59 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:34:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:34:59 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:34:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:34:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@b0c30874, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@295acb9b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7ed4253, socketFactory=javax.net.DefaultSocketFactory@699d5b35, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:34:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:34:59 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:34:59 INFO WorkspaceExplorerServiceImpl:188 - end time - 82 msc 0 sec -2016-05-02 16:34:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:34:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:34:59 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:34:59 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:244314}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1854855}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1355924, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:34:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:34:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2650824, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:34:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:34:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:34:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:34:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:34:59 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126864}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1347414, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:34:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:34:59 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540650}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1585974, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:34:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:34:59 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854856}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG command:56 - Command execution completed -2016-05-02 16:34:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG command:56 - Command execution completed -2016-05-02 16:34:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG command:56 - Command execution completed -2016-05-02 16:34:59 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:34:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG command:56 - Command execution completed -2016-05-02 16:34:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:34:59 DEBUG command:56 - Command execution completed -2016-05-02 16:34:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:35:00 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:35:00 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:35:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:35:00 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:35:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:35:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:35:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:35:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:35:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:35:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:35:00 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:35:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:35:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:35:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:35:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:35:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:35:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:35:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:35:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:35:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:35:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:35:00 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:35:00 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:35:00 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:35:00 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:35:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:35:00 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:35:00 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 16:35:00 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:35:00 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:35:00 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:35:00 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:35:00 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:35:00 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:35:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:35:00 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:35:00 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:35:00 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:35:00 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:35:00 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:35:00 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:00 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:00 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:00 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@b0c30874, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@295acb9b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7ed4253, socketFactory=javax.net.DefaultSocketFactory@699d5b35, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:35:00 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:35:00 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:35:00 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854857}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1662214, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:00 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:35:00 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:00 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244315}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:00 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1658451, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:00 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126866}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1145782, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:00 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854858}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG command:56 - Command execution completed -2016-05-02 16:35:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG command:56 - Command execution completed -2016-05-02 16:35:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540651}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG command:56 - Command execution completed -2016-05-02 16:35:00 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:35:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1519227, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:00 DEBUG command:56 - Command execution completed -2016-05-02 16:35:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:35:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG command:56 - Command execution completed -2016-05-02 16:35:00 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:35:00 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:35:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:35:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:35:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:35:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:35:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:35:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:35:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:35:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:35:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:35:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:35:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:35:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:35:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:35:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:35:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:35:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:35:00 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:35:00 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:35:00 DEBUG query:56 - Query completed -2016-05-02 16:35:00 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 16:35:00 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126864} -2016-05-02 16:35:00 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:244314} -2016-05-02 16:35:00 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540650} -2016-05-02 16:35:00 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854856}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:35:00 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854856} -2016-05-02 16:35:00 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1854855} -2016-05-02 16:35:00 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:35:00 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:35:00 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:35:00 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 16:35:00 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:35:00 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:35:00 INFO WorkspaceExplorerServiceImpl:188 - end time - 49 msc 0 sec -2016-05-02 16:35:00 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:35:00 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:35:00 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:35:00 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:35:00 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:35:01 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:35:01 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:35:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:35:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:35:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:35:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:35:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:35:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:35:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:35:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:35:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:35:01 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:35:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:35:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:35:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:35:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:35:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:35:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:35:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:35:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:35:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:35:01 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:35:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:35:01 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:35:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:35:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:35:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:35:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:35:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:35:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:35:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:35:01 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:35:01 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:35:01 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:35:01 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 16:35:01 DEBUG query:56 - Query completed -2016-05-02 16:35:01 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 16:35:01 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126866} -2016-05-02 16:35:01 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244315} -2016-05-02 16:35:01 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854858}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:35:01 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854858} -2016-05-02 16:35:01 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540651} -2016-05-02 16:35:01 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:35:01 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854857} -2016-05-02 16:35:01 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:35:01 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:35:01 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 16:35:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:35:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:35:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:35:02 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 16:35:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:35:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:35:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:35:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:35:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:35:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:35:02 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:35:02 DEBUG ServiceEngine:193 - get() - start -2016-05-02 16:35:02 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:35:02 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:35:02 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:35:02 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:35:02 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:35:02 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:35:02 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 16:35:02 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:35:02 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:35:02 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:35:02 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:35:02 DEBUG Operation:173 - get(String) - start -2016-05-02 16:35:02 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:35:02 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:35:02 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:35:02 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:35:02 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:02 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:02 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@b0c30874, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@295acb9b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7ed4253, socketFactory=javax.net.DefaultSocketFactory@699d5b35, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:35:02 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:35:02 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244316}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854859}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1236402, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:02 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:35:02 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:02 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126867}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=4582337, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:02 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:02 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1036269, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540652}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2103041, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854860}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:35:02 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:35:02 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:35:02 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG query:56 - Query completed -2016-05-02 16:35:02 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:35:02 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:35:02 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 16:35:02 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG update:56 - Update completed -2016-05-02 16:35:02 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1854860}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG query:56 - Query completed -2016-05-02 16:35:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:35:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:35:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:35:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:35:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:35:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:35:02 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:35:02 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 16:35:02 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 16:35:02 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 16:35:02 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:35:02 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:35:02 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:35:02 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:35:02 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 16:35:02 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:35:02 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 16:35:02 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 16:35:02 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:35:02 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:35:02 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:35:02 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:35:02 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:35:02 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:35:02 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:35:02 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:02 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:02 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@b0c30874, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@295acb9b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7ed4253, socketFactory=javax.net.DefaultSocketFactory@699d5b35, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:35:02 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:35:02 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244317}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854861}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=5554974, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:02 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:35:02 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:02 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:02 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=7088112, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:02 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126868}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=966482, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854862}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854862}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854862}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540653}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854862}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1353422, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:35:02 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:35:02 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854862}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854862}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG command:56 - Command execution completed -2016-05-02 16:35:02 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:35:02 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854862}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG query:56 - Query completed -2016-05-02 16:35:02 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:35:02 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126868} -2016-05-02 16:35:02 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244317} -2016-05-02 16:35:02 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540653} -2016-05-02 16:35:02 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854862}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:35:02 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854862} -2016-05-02 16:35:02 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:35:02 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854861} -2016-05-02 16:35:02 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:35:02 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:35:02 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:35:02 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:35:02 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 16:35:02 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:35:02 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:35:02 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:35:02 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:35:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:35:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:35:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:35:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:35:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:35:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:35:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:35:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:35:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:35:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:35:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:35:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 16:35:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:35:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 16:35:29 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2126867} -2016-05-02 16:35:29 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1540652} -2016-05-02 16:35:29 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1854860}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:35:29 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:244316} -2016-05-02 16:35:29 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1854860} -2016-05-02 16:35:29 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1854859} -2016-05-02 16:35:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:35:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:36:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:36:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:37:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:37:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:38:24 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 16:38:24 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 16:38:24 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 16:38:24 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:38:24 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:38:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:38:24 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:38:24 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@1ec30084 -2016-05-02 16:38:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:38:24 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:38:24 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:38:24 DEBUG TemplateModel:83 - 2016-05-02 16:38:24, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:38:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:38:24 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 16:38:26 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:38:26 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:38:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:38:26 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:26 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:38:26 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:38:26 DEBUG TemplateModel:83 - 2016-05-02 16:38:26, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:38:26 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:38:26 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:38:26 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 113 ms -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 16:38:26 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 16:38:26 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 16:38:26 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:38:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:38:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@56f553cc -2016-05-02 16:38:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@5110e583 -2016-05-02 16:38:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5e5caa26 -2016-05-02 16:38:26 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@3fbf14f6 -2016-05-02 16:38:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 94 ms -2016-05-02 16:38:26 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 16:38:26 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 16:38:26 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 16:38:26 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 16:38:26 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 16:38:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:26 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:38:26 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 16:38:26 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-02 16:38:26 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 16:38:26 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:38:26 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 16:38:26 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:38:27 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:38:27 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:38:27 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:38:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:38:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:38:27 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 16:38:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:27 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 16:38:27 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 16:38:27 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 16:38:27 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 16:38:27 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 16:38:27 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 16:38:27 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:38:27 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 16:38:27 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 16:38:27 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 16:38:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:38:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:27 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 16:38:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:27 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 16:38:27 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:38:27 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:38:27 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 16:38:27 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:38:27 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:38:27 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 16:38:27 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:38:27 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 16:38:27 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 16:38:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:27 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:38:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 16:38:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 16:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 16:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:28 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 16:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:28 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:38:28 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:38:28 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:38:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:38:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:38:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:28 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 16:38:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:29 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 16:38:29 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 16:38:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 120 msc 0 sec -2016-05-02 16:38:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:29 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 16:38:29 DEBUG ASLSession:458 - Getting security token: null in thread 28 -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 16:38:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:29 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 16:38:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:29 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:38:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:38:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:38:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:38:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 16:38:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 133 msc 0 sec -2016-05-02 16:38:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 43 ms -2016-05-02 16:38:29 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 16:38:29 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 16:38:29 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 16:38:29 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:38:29 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:38:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:38:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:38:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:38:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 350 msc 0 sec -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:38:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:38:36 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 16:38:36 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:38:36 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:38:36 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 16:38:36 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 16:38:36 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 16:38:36 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 16:38:36 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 16:38:36 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 16:38:36 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:38:36 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 16:38:36 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 16:38:36 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 16:38:36 DEBUG WPS2SM:204 - Schema: null -2016-05-02 16:38:36 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 16:38:36 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:38:36 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 16:38:36 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 16:38:36 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 16:38:36 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 16:38:36 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 16:38:36 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 16:38:36 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 16:38:36 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 16:38:36 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:38:36 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 16:38:36 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 16:38:36 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:38:36 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:38:36 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 16:38:36 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:38:36 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 16:38:36 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 16:38:36 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 16:38:36 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 16:38:36 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 16:38:36 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 16:38:36 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 16:38:36 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 16:38:36 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:38:36 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 16:38:36 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:38:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:36 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:38:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 28 -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 16:38:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 16:38:36 DEBUG ASLSession:458 - Getting security token: null in thread 28 -2016-05-02 16:38:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:38:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:38:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:38:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 229 msc 0 sec -2016-05-02 16:38:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:38:54 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:38:54 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:38:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:38:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:54 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 16:38:54 DEBUG ASLSession:458 - Getting security token: null in thread 28 -2016-05-02 16:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 16:38:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:54 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:38:54 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:38:54 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:38:54 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:38:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:38:54 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:38:54 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 16:38:54 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 16:38:54 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:38:54 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:38:54 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:38:54 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:38:54 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:38:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:38:54 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:38:54 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:38:54 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:38:54 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:38:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:38:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:38:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:38:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:38:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:38:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:38:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:54 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:38:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:54 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:38:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@23e14fc2, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4018b2a3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@15780c35, socketFactory=javax.net.DefaultSocketFactory@7c697695, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:38:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:38:54 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:38:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:38:54 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:38:54 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:38:54 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1854903}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1617828, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:38:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:54 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:244358}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1475882, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 65 msc 0 sec -2016-05-02 16:38:54 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126908}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1545657, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:54 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:38:54 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:38:54 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540692}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1391539, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:38:54 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854904}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854904}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG command:56 - Command execution completed -2016-05-02 16:38:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854904}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG command:56 - Command execution completed -2016-05-02 16:38:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854904}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG command:56 - Command execution completed -2016-05-02 16:38:54 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:38:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854904}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG command:56 - Command execution completed -2016-05-02 16:38:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854904}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:54 DEBUG command:56 - Command execution completed -2016-05-02 16:38:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854904}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG query:56 - Query completed -2016-05-02 16:38:55 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 16:38:55 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126908} -2016-05-02 16:38:55 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854904}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:38:55 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540692} -2016-05-02 16:38:55 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:244358} -2016-05-02 16:38:55 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854904} -2016-05-02 16:38:55 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1854903} -2016-05-02 16:38:55 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:38:55 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:38:55 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:38:55 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 16:38:55 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:38:55 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:38:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:38:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:55 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:55 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:38:55 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:38:55 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:38:55 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:38:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:38:55 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:38:55 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 16:38:55 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:38:55 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:38:55 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:38:55 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:38:55 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:38:55 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:38:55 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:38:55 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:38:55 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:38:55 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:38:55 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:38:55 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:38:55 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:55 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:55 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:55 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@23e14fc2, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4018b2a3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@15780c35, socketFactory=javax.net.DefaultSocketFactory@7c697695, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:38:55 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:38:55 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:38:55 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244359}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1648813, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:55 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:38:55 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854905}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:55 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1365708, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:55 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:55 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126909}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=910917, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 16:38:55 DEBUG ASLSession:458 - Getting security token: null in thread 28 -2016-05-02 16:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 16:38:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:38:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:38:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:55 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:38:55 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:38:55 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540693}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1673897, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:38:55 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854906}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854906}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG command:56 - Command execution completed -2016-05-02 16:38:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854906}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG command:56 - Command execution completed -2016-05-02 16:38:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854906}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG command:56 - Command execution completed -2016-05-02 16:38:55 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:38:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854906}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG command:56 - Command execution completed -2016-05-02 16:38:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854906}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 DEBUG command:56 - Command execution completed -2016-05-02 16:38:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854906}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:55 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:38:55 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:38:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 75 msc 0 sec -2016-05-02 16:38:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:38:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:38:55 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:38:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:38:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:38:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:38:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:38:56 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:38:56 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:38:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:38:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:38:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:56 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:38:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:38:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:38:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:38:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:56 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:38:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:38:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:38:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:38:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:56 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:38:56 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:38:56 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:38:56 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 16:38:56 DEBUG query:56 - Query completed -2016-05-02 16:38:56 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 16:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126909} -2016-05-02 16:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244359} -2016-05-02 16:38:56 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854906}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540693} -2016-05-02 16:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854906} -2016-05-02 16:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854905} -2016-05-02 16:38:56 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:38:56 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:38:56 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:38:56 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 16:38:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:38:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:38:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:38:57 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 16:38:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:57 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:38:57 DEBUG ServiceEngine:193 - get() - start -2016-05-02 16:38:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:38:57 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:38:57 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:38:57 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:38:57 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:38:57 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:38:57 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 16:38:57 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:38:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:38:57 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:38:57 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:38:57 DEBUG Operation:173 - get(String) - start -2016-05-02 16:38:57 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:38:57 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:38:57 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:38:57 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:38:57 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:57 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:57 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@23e14fc2, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4018b2a3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@15780c35, socketFactory=javax.net.DefaultSocketFactory@7c697695, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:38:57 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:38:57 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854907}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1568451, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:57 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:38:57 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:57 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:57 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126910}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1183484, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244360}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1408922, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540694}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1933760, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854908}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:38:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:38:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:38:57 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG query:56 - Query completed -2016-05-02 16:38:57 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:38:57 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:38:57 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 16:38:57 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG update:56 - Update completed -2016-05-02 16:38:57 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1854908}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG query:56 - Query completed -2016-05-02 16:38:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:38:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:38:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:38:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:38:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:38:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:38:57 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:38:57 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 16:38:57 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 16:38:57 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 16:38:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:38:57 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:38:57 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:38:57 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:38:57 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 16:38:57 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:38:57 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 16:38:57 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 16:38:57 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:38:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:38:57 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:38:57 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:38:57 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:38:57 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:38:57 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:38:57 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:57 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:57 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@23e14fc2, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4018b2a3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@15780c35, socketFactory=javax.net.DefaultSocketFactory@7c697695, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:38:57 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:38:57 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244361}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1287949, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:57 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:38:57 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:57 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126911}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854909}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=997233, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1378194, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:57 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540695}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1309067, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:38:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 16:38:57 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854910}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:38:57 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:38:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG command:56 - Command execution completed -2016-05-02 16:38:57 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:38:57 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854910}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:38:57 DEBUG query:56 - Query completed -2016-05-02 16:38:57 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:38:57 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126911} -2016-05-02 16:38:57 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244361} -2016-05-02 16:38:57 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540695} -2016-05-02 16:38:57 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854910}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:38:57 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854910} -2016-05-02 16:38:57 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854909} -2016-05-02 16:38:57 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:38:57 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:38:58 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:38:58 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:38:58 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:38:58 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 16:38:58 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:38:58 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:38:58 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:39:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:39:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:39:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:39:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:39:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:39:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:39:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:39:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:39:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:39:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:39:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:39:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:39:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:39:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:39:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:39:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:39:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:39:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:39:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:39:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:40:17 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 16:40:17 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 16:40:17 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 16:40:17 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:40:17 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:40:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:40:17 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:40:17 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@c101c3d -2016-05-02 16:40:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:17 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:40:17 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:40:17 DEBUG TemplateModel:83 - 2016-05-02 16:40:17, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:40:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:40:17 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 16:40:19 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:40:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:40:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:40:19 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:40:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:19 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:40:19 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:40:19 DEBUG TemplateModel:83 - 2016-05-02 16:40:19, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:40:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:40:19 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:40:19 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 112 ms -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 16:40:19 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 16:40:19 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 16:40:19 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:40:19 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:40:19 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@16ee0452 -2016-05-02 16:40:19 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@5f4fe8ad -2016-05-02 16:40:19 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4df26a79 -2016-05-02 16:40:19 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@756b3e5f -2016-05-02 16:40:19 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 104 ms -2016-05-02 16:40:19 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 16:40:19 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 16:40:19 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 16:40:19 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 16:40:19 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 16:40:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:19 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:40:19 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 16:40:19 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 17 ms -2016-05-02 16:40:19 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 16:40:19 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:40:19 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 16:40:19 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:40:20 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:40:20 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:40:20 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:40:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:40:20 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:40:20 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 16:40:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:20 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 16:40:20 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 16:40:20 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 16:40:20 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 16:40:20 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 16:40:20 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 16:40:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 16:40:20 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:40:20 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 16:40:20 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 16:40:20 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 16:40:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:20 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 16:40:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:20 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 16:40:20 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:40:20 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:40:20 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 16:40:20 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:40:20 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:40:20 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 16:40:20 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 16:40:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:20 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:40:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:20 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 16:40:20 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:40:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 16:40:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:40:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 16:40:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:40:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 16:40:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:21 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:40:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 16:40:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:22 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:40:22 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:40:22 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:40:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:40:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:40:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:40:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:22 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 16:40:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:40:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:22 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 16:40:22 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 16:40:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 134 msc 0 sec -2016-05-02 16:40:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:22 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:40:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:22 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 16:40:22 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 16:40:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:22 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 16:40:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 125 msc 0 sec -2016-05-02 16:40:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 16:40:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:40:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:40:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 21 ms -2016-05-02 16:40:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 16:40:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:40:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 16:40:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 16:40:23 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 16:40:23 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 16:40:23 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 16:40:23 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 16:40:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 16:40:23 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 16:40:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 16:40:23 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:40:23 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:40:23 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-02 16:40:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 16:40:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 16:40:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 16:40:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 379 msc 0 sec -2016-05-02 16:40:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:40:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:40:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:40:25 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 16:40:25 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:40:25 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:40:26 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 16:40:26 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 16:40:26 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 16:40:26 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 16:40:26 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 16:40:26 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 16:40:26 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:40:26 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 16:40:26 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 16:40:26 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 16:40:26 DEBUG WPS2SM:204 - Schema: null -2016-05-02 16:40:26 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 16:40:26 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:40:26 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 16:40:26 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 16:40:26 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 16:40:26 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 16:40:26 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 16:40:26 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 16:40:26 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 16:40:26 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 16:40:26 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:40:26 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 16:40:26 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 16:40:26 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:40:26 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:40:26 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 16:40:26 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:40:26 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 16:40:26 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 16:40:26 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 16:40:26 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 16:40:26 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 16:40:26 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 16:40:26 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 16:40:26 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 16:40:26 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:40:26 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 16:40:26 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:40:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:40:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:40:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:40:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:26 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:40:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:40:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:40:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:40:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:26 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:40:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:26 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:40:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:26 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:40:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:40:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:40:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:40:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:40:26 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:40:26 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:40:26 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:40:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:40:26 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:40:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:40:26 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:40:26 INFO WorkspaceExplorerServiceImpl:142 - end time - 241 msc 0 sec -2016-05-02 16:40:26 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:40:31 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:40:31 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:40:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:40:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:40:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:40:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:31 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:40:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:40:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:40:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:40:31 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:40:31 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:40:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:40:31 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:40:31 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 16:40:31 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 16:40:31 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:40:31 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:40:31 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:40:31 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:40:31 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:40:31 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:40:31 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:40:31 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:40:31 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:40:31 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:40:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:40:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:40:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:40:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:40:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:31 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:40:31 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:40:31 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:40:31 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:31 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:31 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e70cd447, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@1a5bf3e3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@ae8c99a, socketFactory=javax.net.DefaultSocketFactory@390ba30e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:40:31 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:40:31 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:40:31 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:40:31 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:40:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:40:31 INFO WorkspaceExplorerServiceImpl:188 - end time - 78 msc 0 sec -2016-05-02 16:40:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:40:31 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:40:31 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1854926}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1391774, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:31 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:244377}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:40:31 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:31 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:31 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1527310, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:31 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2126928}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=980382, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:31 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1854927}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540713}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1428019, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:31 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:40:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854927}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 DEBUG command:56 - Command execution completed -2016-05-02 16:40:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854927}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 DEBUG command:56 - Command execution completed -2016-05-02 16:40:31 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854927}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:31 DEBUG command:56 - Command execution completed -2016-05-02 16:40:31 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:40:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854927}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG command:56 - Command execution completed -2016-05-02 16:40:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1854927}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG command:56 - Command execution completed -2016-05-02 16:40:32 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1854927}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:40:32 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:40:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:32 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 16:40:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 16:40:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:32 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:40:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:40:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:40:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:40:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:32 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:40:32 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:40:32 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:40:32 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:40:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:40:32 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:40:32 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 16:40:32 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:40:32 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:40:32 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:40:32 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:40:32 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:40:32 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:40:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:40:32 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:40:32 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:40:32 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:40:32 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:40:32 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:40:32 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:32 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:32 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:32 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e70cd447, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@1a5bf3e3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@ae8c99a, socketFactory=javax.net.DefaultSocketFactory@390ba30e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:40:32 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:40:32 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:40:32 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1854928}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1618845, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:32 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:40:32 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:32 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:32 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244378}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1451339, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:32 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2126929}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=995233, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:40:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:40:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:40:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:32 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:40:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:32 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:40:32 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:40:32 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540714}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1704386, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:40:32 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:40:32 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1854929}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854929}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG command:56 - Command execution completed -2016-05-02 16:40:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854929}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG command:56 - Command execution completed -2016-05-02 16:40:32 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:40:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854929}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG command:56 - Command execution completed -2016-05-02 16:40:32 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:40:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854929}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG command:56 - Command execution completed -2016-05-02 16:40:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1854929}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 DEBUG command:56 - Command execution completed -2016-05-02 16:40:32 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1854929}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:32 INFO WorkspaceExplorerServiceImpl:188 - end time - 64 msc 0 sec -2016-05-02 16:40:32 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:40:32 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:40:32 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:40:32 DEBUG query:56 - Query completed -2016-05-02 16:40:32 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 16:40:32 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2126928} -2016-05-02 16:40:32 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:244377} -2016-05-02 16:40:32 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540713} -2016-05-02 16:40:32 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1854927}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:40:32 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1854927} -2016-05-02 16:40:32 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1854926} -2016-05-02 16:40:32 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:40:32 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:40:32 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:40:32 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 16:40:32 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:40:32 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:40:33 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:40:33 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:40:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:40:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:40:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:40:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:33 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:40:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:40:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:40:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:33 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:40:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:40:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:40:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:40:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:33 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:40:33 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:40:33 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:40:33 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 16:40:33 DEBUG query:56 - Query completed -2016-05-02 16:40:33 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 16:40:33 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2126929} -2016-05-02 16:40:33 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244378} -2016-05-02 16:40:33 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540714} -2016-05-02 16:40:33 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1854929}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:40:33 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1854929} -2016-05-02 16:40:33 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:40:33 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:40:33 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:40:33 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 16:40:33 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1854928} -2016-05-02 16:40:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:40:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:40:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:40:34 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 16:40:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:34 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:40:34 DEBUG ServiceEngine:193 - get() - start -2016-05-02 16:40:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:40:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:40:34 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:40:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:40:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:40:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:40:34 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 16:40:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:40:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:40:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:40:34 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:40:34 DEBUG Operation:173 - get(String) - start -2016-05-02 16:40:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:40:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:40:34 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:40:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:40:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e70cd447, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@1a5bf3e3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@ae8c99a, socketFactory=javax.net.DefaultSocketFactory@390ba30e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:40:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:40:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244381}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1464979, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:40:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2126930}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1014023, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1854930}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1585014, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:34 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540715}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1243537, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1854931}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:40:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:40:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:40:34 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG query:56 - Query completed -2016-05-02 16:40:34 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:40:34 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:40:34 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 16:40:34 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG update:56 - Update completed -2016-05-02 16:40:34 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1854931}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG query:56 - Query completed -2016-05-02 16:40:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:40:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:40:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:40:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:40:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:40:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:40:34 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:40:34 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 16:40:34 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 16:40:34 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 16:40:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:40:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:40:34 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:40:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:40:34 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 16:40:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:40:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 16:40:34 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 16:40:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:40:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:40:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:40:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:40:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:40:34 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:40:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:40:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e70cd447, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@1a5bf3e3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@ae8c99a, socketFactory=javax.net.DefaultSocketFactory@390ba30e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:40:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:40:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244382}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1533208, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:40:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2126931}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=977240, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1854932}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1380196, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:34 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540716}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1609548, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:40:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:40:34 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1854933}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:40:34 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:40:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1854933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG command:56 - Command execution completed -2016-05-02 16:40:34 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:40:34 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1854933}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:34 DEBUG query:56 - Query completed -2016-05-02 16:40:34 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:40:34 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2126931} -2016-05-02 16:40:34 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244382} -2016-05-02 16:40:34 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540716} -2016-05-02 16:40:34 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1854933}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:40:34 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1854933} -2016-05-02 16:40:34 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:40:34 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1854932} -2016-05-02 16:40:34 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:40:34 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:40:34 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:40:34 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:40:34 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 16:40:34 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:40:34 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:40:34 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:40:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 16:40:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 16:40:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 16:40:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:40:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:40:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:40:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:40:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:40:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:40:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:40:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:40:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:40:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:40:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:41:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:41:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:41:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:41:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:41:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:41:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:41:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:41:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:41:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:41:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:41:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:41:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:41:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:41:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:41:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:41:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:41:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:41:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:41:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:41:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:41:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:41:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:41:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:41:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:41:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:41:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:41:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:41:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:41:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:41:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:41:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:41:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:41:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:41:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:41:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:41:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:41:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:42:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:42:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:42:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:42:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:42:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:42:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:42:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:42:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:42:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:42:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:42:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:42:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:42:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:42:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:42:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:42:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:42:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:42:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:42:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:42:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:42:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:42:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:42:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:42:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:42:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:42:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:42:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:42:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:42:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:42:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:42:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:42:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:42:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:43:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:43:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:43:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:43:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:43:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:43:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:43:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:43:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:43:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:43:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:43:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:43:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:43:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:43:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:43:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:43:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:43:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:43:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:43:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:43:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:43:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:43:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:43:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:43:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:43:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:43:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:43:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:43:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:43:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:43:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:43:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:43:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:43:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:43:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 16:43:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:43:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 16:43:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:43:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 16:43:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:43:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 16:43:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:43:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:44:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:44:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:44:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:44:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:44:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:44:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:44:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:44:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 16:44:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:44:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:44:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:44:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:44:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:44:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:44:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:44:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:44:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:44:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:44:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:44:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:44:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:44:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:44:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:44:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:44:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:44:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:44:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:44:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:44:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 16:44:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:44:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:44:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:44:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:44:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:44:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:44:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:44:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:44:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:44:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:45:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:45:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:45:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:45:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:45:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:45:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:45:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:45:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:45:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:45:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:45:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:45:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:45:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:45:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:45:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:45:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:45:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:45:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:45:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:45:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:45:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:45:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:45:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:45:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:45:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:45:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:45:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:45:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:45:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 16:45:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:45:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:45:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:45:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:45:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:45:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:45:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:45:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:45:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:45:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 16:46:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:46:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:46:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:46:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:46:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:46:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:46:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:46:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 16:46:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:46:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:46:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:46:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:46:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:46:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:46:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:46:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:46:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:46:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:46:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:46:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:46:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:46:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:46:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:46:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 16:46:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:46:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:46:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:46:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:46:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:46:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:46:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:46:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 16:47:15 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 16:47:15 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 16:47:15 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 16:47:15 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:47:15 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:47:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:47:15 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:47:15 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4ff7be65 -2016-05-02 16:47:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:47:15 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:47:15 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:47:15 DEBUG TemplateModel:83 - 2016-05-02 16:47:15, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:47:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:47:15 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 16:47:18 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 16:47:18 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 16:47:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:47:18 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 16:47:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:18 INFO ASLSession:352 - Logging the entrance -2016-05-02 16:47:18 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 16:47:18 DEBUG TemplateModel:83 - 2016-05-02 16:47:18, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 16:47:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:47:18 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:47:18 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 138 ms -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 16:47:18 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 16:47:18 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 16:47:18 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:47:18 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 16:47:18 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@4c8277e9 -2016-05-02 16:47:18 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@74e50a4b -2016-05-02 16:47:18 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1f5bfd84 -2016-05-02 16:47:18 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@7924e782 -2016-05-02 16:47:18 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 98 ms -2016-05-02 16:47:18 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 16:47:18 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 16:47:18 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 16:47:18 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 16:47:18 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 16:47:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:18 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:47:18 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 16:47:18 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 30 ms -2016-05-02 16:47:18 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 16:47:18 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:47:18 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 16:47:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:47:19 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:47:19 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:47:19 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:47:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:47:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:47:19 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 16:47:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:19 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 16:47:19 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 16:47:19 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 16:47:19 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 16:47:19 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 16:47:19 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 16:47:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 16:47:19 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:47:19 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 16:47:19 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 33 ms -2016-05-02 16:47:19 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 16:47:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:19 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 16:47:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:19 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 16:47:19 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:47:19 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:47:19 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 16:47:19 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:47:19 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 16:47:19 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 16:47:19 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 16:47:19 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 16:47:19 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 16:47:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:20 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 16:47:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:20 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 16:47:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:20 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 16:47:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:20 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 16:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 16:47:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:21 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 16:47:21 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 16:47:21 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 16:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:47:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:47:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:21 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 16:47:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:21 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 16:47:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:21 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 16:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:21 INFO WorkspaceExplorerServiceImpl:188 - end time - 132 msc 0 sec -2016-05-02 16:47:21 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 16:47:21 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 16:47:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:22 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 16:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:47:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:47:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 145 msc 0 sec -2016-05-02 16:47:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 36 ms -2016-05-02 16:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:47:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:47:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 16:47:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 16:47:22 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 16:47:22 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 16:47:22 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 16:47:22 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 16:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:47:22 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 16:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:47:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 16:47:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 16:47:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 16:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 16:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 371 msc 0 sec -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:47:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:47:25 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 16:47:25 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:47:25 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 16:47:25 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 16:47:25 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 16:47:25 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 16:47:25 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 16:47:25 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 16:47:25 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 16:47:25 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 16:47:25 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 16:47:25 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 16:47:25 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 16:47:25 DEBUG WPS2SM:204 - Schema: null -2016-05-02 16:47:25 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 16:47:25 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:47:25 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 16:47:25 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 16:47:25 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 16:47:25 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 16:47:25 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 16:47:25 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 16:47:25 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 16:47:25 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 16:47:25 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:47:25 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 16:47:25 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 16:47:25 DEBUG WPS2SM:92 - WPS type: -2016-05-02 16:47:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 16:47:25 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 16:47:25 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 16:47:25 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 16:47:25 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 16:47:25 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 16:47:25 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 16:47:25 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 16:47:25 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 16:47:25 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 16:47:25 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 16:47:25 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 16:47:25 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 16:47:25 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:47:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:47:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:47:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:47:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:47:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:25 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:47:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:47:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:47:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:47:25 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:47:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:47:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:25 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:47:26 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:47:26 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:47:26 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:47:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:47:26 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:47:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:47:26 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:47:26 INFO WorkspaceExplorerServiceImpl:142 - end time - 200 msc 0 sec -2016-05-02 16:47:26 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:47:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:47:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:47:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:47:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:47:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:47:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:47:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:47:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:47:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:47:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:47:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:47:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 178 msc 0 sec -2016-05-02 16:47:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:47:34 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:47:34 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:47:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:47:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:47:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:47:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:34 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:47:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:47:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:34 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:47:34 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:47:34 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:47:34 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:47:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:47:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:47:34 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 16:47:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 16:47:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:47:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:47:34 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:47:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:47:34 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:47:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:47:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:47:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:47:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:47:34 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:47:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:47:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:47:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:47:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:47:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:47:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:47:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:47:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:34 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:47:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:34 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:47:34 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:47:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:35 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7eeaa766, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@51882120, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4036e5b1, socketFactory=javax.net.DefaultSocketFactory@5421e866, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:47:35 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:47:35 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 16:47:35 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:47:35 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:47:35 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:47:35 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:47:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 81 msc 0 sec -2016-05-02 16:47:35 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:244453}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=7805566, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:35 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:47:35 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:35 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:35 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2127002}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1045502, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:35 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1855004}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1755387, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:35 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:35 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540787}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1492196, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=7.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:47:35 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1855005}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855005}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG command:56 - Command execution completed -2016-05-02 16:47:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855005}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG command:56 - Command execution completed -2016-05-02 16:47:35 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855005}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG command:56 - Command execution completed -2016-05-02 16:47:35 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:47:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855005}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG command:56 - Command execution completed -2016-05-02 16:47:35 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855005}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG command:56 - Command execution completed -2016-05-02 16:47:35 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1855005}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:47:35 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:47:35 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:47:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:47:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:47:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:35 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:47:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:47:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:47:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:47:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:35 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:47:35 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:47:35 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:47:35 DEBUG ServiceEngine:306 - get() - start -2016-05-02 16:47:35 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:47:35 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:47:35 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 16:47:35 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 16:47:35 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:47:35 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:47:35 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 16:47:35 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:47:35 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:47:35 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:47:35 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:47:35 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:47:35 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:47:35 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:47:35 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:47:35 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:35 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:35 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7eeaa766, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@51882120, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4036e5b1, socketFactory=javax.net.DefaultSocketFactory@5421e866, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:47:35 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:47:35 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:47:35 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1855006}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1532578, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:35 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:47:35 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:35 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244454}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:35 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2356895, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:35 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2127003}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1059317, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:35 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1540788}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:35 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1576525, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:47:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:47:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:47:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:47:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:47:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:47:36 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1855007}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855007}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:36 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 16:47:36 DEBUG command:56 - Command execution completed -2016-05-02 16:47:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855007}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:36 DEBUG command:56 - Command execution completed -2016-05-02 16:47:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855007}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:36 DEBUG command:56 - Command execution completed -2016-05-02 16:47:36 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:47:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855007}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:36 DEBUG command:56 - Command execution completed -2016-05-02 16:47:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855007}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:36 DEBUG command:56 - Command execution completed -2016-05-02 16:47:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1855007}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:36 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:47:36 DEBUG query:56 - Query completed -2016-05-02 16:47:36 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 16:47:36 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 16:47:36 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2127002} -2016-05-02 16:47:36 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:244453} -2016-05-02 16:47:36 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540787} -2016-05-02 16:47:36 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1855005}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:47:36 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1855005} -2016-05-02 16:47:36 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1855004} -2016-05-02 16:47:36 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:47:36 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:47:36 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 16:47:36 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 16:47:36 INFO WorkspaceExplorerServiceImpl:188 - end time - 89 msc 0 sec -2016-05-02 16:47:36 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 16:47:36 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:47:36 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 16:47:36 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 16:47:36 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 16:47:36 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:47:36 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:47:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:47:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:36 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:47:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:47:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:36 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:47:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:47:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:47:36 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 16:47:37 DEBUG query:56 - Query completed -2016-05-02 16:47:37 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2127003} -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244454} -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1540788} -2016-05-02 16:47:37 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1855007}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1855007} -2016-05-02 16:47:37 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1855006} -2016-05-02 16:47:37 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:47:37 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 16:47:37 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 16:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:47:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:47:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 16:47:37 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 16:47:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:37 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:47:37 DEBUG ServiceEngine:193 - get() - start -2016-05-02 16:47:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:47:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:47:37 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:47:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:47:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:47:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 16:47:37 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 16:47:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:47:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:47:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:47:37 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:47:37 DEBUG Operation:173 - get(String) - start -2016-05-02 16:47:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:47:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:47:37 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:47:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:47:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7eeaa766, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@51882120, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4036e5b1, socketFactory=javax.net.DefaultSocketFactory@5421e866, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:47:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:47:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1855008}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244455}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1476516, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1395670, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:47:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:37 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2127004}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1143920, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540789}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1240311, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1855009}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:47:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:47:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:47:37 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG query:56 - Query completed -2016-05-02 16:47:37 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:47:37 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 16:47:37 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 16:47:37 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG update:56 - Update completed -2016-05-02 16:47:37 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1855009}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG query:56 - Query completed -2016-05-02 16:47:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:47:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:47:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:47:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:47:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:47:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:47:37 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 16:47:37 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 16:47:37 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 16:47:37 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 16:47:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:47:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:47:37 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 16:47:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 16:47:37 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 16:47:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 16:47:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 16:47:37 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 16:47:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 16:47:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 16:47:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 16:47:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 16:47:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 16:47:37 DEBUG MongoIO:77 - open mongo connection -2016-05-02 16:47:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 16:47:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7eeaa766, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@51882120, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4036e5b1, socketFactory=javax.net.DefaultSocketFactory@5421e866, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 16:47:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 16:47:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244456}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1242026, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 16:47:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2127005}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=875219, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1855010}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1239275, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:37 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540790}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1384688, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 16:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:47:37 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1855011}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:47:37 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:47:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG command:56 - Command execution completed -2016-05-02 16:47:37 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:47:37 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1855011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:37 DEBUG query:56 - Query completed -2016-05-02 16:47:37 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2127005} -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244456} -2016-05-02 16:47:37 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1855011}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1855011} -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1855010} -2016-05-02 16:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540790} -2016-05-02 16:47:37 INFO MongoIO:508 - Mongo has been closed -2016-05-02 16:47:37 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 16:47:37 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:47:37 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:47:37 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:47:37 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 16:47:37 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 16:47:37 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:47:37 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 16:47:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 16:47:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 16:47:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 16:47:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:47:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:47:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:47:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:47:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:47:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 16:47:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:47:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:47:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:47:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:48:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:48:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:48:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:48:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:48:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:48:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:48:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:48:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:48:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:48:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:48:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:48:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 16:48:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:48:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:48:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:48:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:48:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:48:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:48:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:48:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:48:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:48:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:48:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:48:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:48:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:48:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:48:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:48:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 16:48:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:48:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:48:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:48:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:48:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:48:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:48:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:48:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:48:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:48:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:48:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:48:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:48:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:48:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:48:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:48:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:48:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:48:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:48:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:48:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:49:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:49:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:49:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:49:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:49:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:49:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:49:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:49:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:49:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:49:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:49:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:49:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:49:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:49:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:49:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:49:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:49:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 16:49:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:49:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:49:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:49:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:49:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:49:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:49:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:49:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:49:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:49:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:49:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:49:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:49:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:49:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:49:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:49:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:50:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:50:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:50:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 16:50:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:50:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 16:50:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:50:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 16:50:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:50:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 16:50:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 16:50:08 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2127004} -2016-05-02 16:50:08 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:244455} -2016-05-02 16:50:08 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1540789} -2016-05-02 16:50:08 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1855009}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 16:50:08 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1855009} -2016-05-02 16:50:08 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1855008} -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:50:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:50:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:50:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:50:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:50:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:50:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:50:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:50:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:50:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:50:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:50:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:50:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:50:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:50:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:50:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:50:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 16:50:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 16:50:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:50:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:50:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:50:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:50:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:50:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:50:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:50:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:50:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:50:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:50:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:50:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:50:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:50:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:50:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:50:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 16:50:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 16:50:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 16:50:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 16:50:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 16:50:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 16:50:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:50:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:50:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:50:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 16:50:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 16:50:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 16:50:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:50:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 16:50:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 16:50:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 16:50:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 16:50:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 16:50:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:50:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 16:50:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 16:50:36 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 16:50:36 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-02 16:50:36 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 16:50:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:50:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:51:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 16:51:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 16:52:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:52:46 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:53:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:53:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:54:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:54:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:55:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 16:55:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 16:56:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:56:26 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 16:57:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 16:57:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 16:58:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 16:58:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 16:59:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 16:59:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:00:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:00:06 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:01:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:01:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:01:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:01:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:02:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:02:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:03:46 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:03:46 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:03:46 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:03:46 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:03:46 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:03:46 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-02 17:03:46 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:03:46 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@269142a2 -2016-05-02 17:03:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:03:46 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:03:46 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:03:46 DEBUG TemplateModel:83 - 2016-05-02 17:03:46, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:03:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:03:46 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:03:48 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:03:48 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:03:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:03:48 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:03:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:03:48 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:03:48 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:03:48 DEBUG TemplateModel:83 - 2016-05-02 17:03:48, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:03:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:03:48 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:03:49 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 142 ms -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:03:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:03:49 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:03:49 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:03:49 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:03:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@5ea2ad27 -2016-05-02 17:03:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@68133151 -2016-05-02 17:03:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@3ab64d4d -2016-05-02 17:03:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@7bf6073b -2016-05-02 17:03:49 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 92 ms -2016-05-02 17:03:50 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:03:50 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:03:50 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:03:50 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:03:50 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:03:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:03:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:03:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:03:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-02 17:03:50 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:03:50 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:03:50 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:03:50 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:03:51 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:03:51 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:03:51 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:03:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:03:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:03:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:03:51 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 17:03:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:51 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:03:51 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:03:51 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:03:51 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:03:51 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:03:51 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:03:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 17:03:51 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:03:51 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:03:51 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:03:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 17:03:51 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:03:51 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:03:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:03:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:51 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:03:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:51 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:03:51 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:03:52 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:03:52 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:03:52 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:03:52 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:03:52 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:03:52 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:03:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:52 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:03:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:03:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:53 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:03:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:03:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:53 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:03:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:03:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:53 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:03:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:03:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:54 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:03:54 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:03:54 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:03:54 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:03:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:54 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:03:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:03:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:03:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:54 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:03:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:54 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:03:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:03:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 154 msc 0 sec -2016-05-02 17:03:54 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:03:54 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:03:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:54 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:03:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 140 msc 0 sec -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:03:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:03:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:03:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:03:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:03:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:03:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 17:03:54 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:03:54 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:03:54 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:03:54 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:03:54 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:03:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:03:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:03:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:03:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:03:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 1437 msc 1 sec -2016-05-02 17:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:03:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:03:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:03:58 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:03:58 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:03:58 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:03:59 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:03:59 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:03:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:03:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:03:59 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:03:59 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:03:59 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:03:59 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:03:59 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:03:59 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:03:59 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:03:59 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:03:59 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:03:59 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:03:59 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:03:59 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:03:59 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:03:59 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:03:59 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:03:59 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:03:59 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:03:59 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:03:59 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:03:59 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:03:59 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:03:59 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:03:59 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:03:59 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:03:59 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:03:59 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:03:59 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:03:59 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:03:59 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:03:59 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:03:59 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:03:59 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:03:59 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:03:59 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:03:59 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-02 17:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:03:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:03:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:03:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:03:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:03:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:03:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:03:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:03:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:03:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 245 msc 0 sec -2016-05-02 17:03:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:04:07 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:04:07 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:04:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:04:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:04:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:04:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:07 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:04:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:04:07 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-02 17:04:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:04:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:07 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:04:07 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:04:07 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:04:07 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:04:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:04:07 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:04:07 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 17:04:07 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 17:04:07 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:04:07 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:04:07 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:04:07 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:04:07 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:04:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:04:07 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:04:07 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:04:07 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:04:07 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:04:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:04:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:04:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:04:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:04:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:04:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:04:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:07 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:04:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:07 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:04:07 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:04:07 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:07 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:04:07 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:04:07 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:07 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:07 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@1de67611, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7b8e8aa9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4b319c9e, socketFactory=javax.net.DefaultSocketFactory@26216fa3, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:04:07 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:04:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 84 msc 0 sec -2016-05-02 17:04:07 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:04:07 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:04:07 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:04:07 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:04:07 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1855195}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:244631}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2108964, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:07 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:04:07 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3764966, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:07 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:07 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:07 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2127180}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=956489, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:07 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540965}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2767715, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}] -2016-05-02 17:04:07 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1855196}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855196}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG command:56 - Command execution completed -2016-05-02 17:04:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855196}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG command:56 - Command execution completed -2016-05-02 17:04:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855196}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG command:56 - Command execution completed -2016-05-02 17:04:07 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:04:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855196}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG command:56 - Command execution completed -2016-05-02 17:04:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855196}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:07 DEBUG command:56 - Command execution completed -2016-05-02 17:04:07 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1855196}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:08 DEBUG query:56 - Query completed -2016-05-02 17:04:08 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 17:04:08 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2127180} -2016-05-02 17:04:08 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1855196}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:04:08 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540965} -2016-05-02 17:04:08 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:244631} -2016-05-02 17:04:08 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1855196} -2016-05-02 17:04:08 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1855195} -2016-05-02 17:04:08 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:04:08 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:04:08 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:04:08 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 17:04:08 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:04:08 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:04:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:04:08 DEBUG ASLSession:458 - Getting security token: null in thread 37 -2016-05-02 17:04:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 37 -2016-05-02 17:04:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:08 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:04:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:04:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:04:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:04:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:08 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:04:08 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:04:08 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:04:09 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:04:09 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:04:09 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:04:09 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 17:04:09 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:04:09 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:04:09 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:04:09 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:04:09 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:04:09 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:04:09 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:04:09 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:04:09 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:04:09 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:04:09 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:04:09 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:04:09 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:09 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:09 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:09 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@1de67611, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7b8e8aa9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4b319c9e, socketFactory=javax.net.DefaultSocketFactory@26216fa3, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:04:09 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:04:09 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:04:09 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244632}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1855197}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1458727, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:09 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:04:09 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:09 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1690856, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:09 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:09 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:2127181}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=970114, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:04:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:04:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:04:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:04:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:09 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:1540966}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:09 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=4240116, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}] -2016-05-02 17:04:09 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:04:09 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:04:09 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:04:09 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:04:09 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1855198}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855198}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG command:56 - Command execution completed -2016-05-02 17:04:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855198}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG command:56 - Command execution completed -2016-05-02 17:04:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855198}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG command:56 - Command execution completed -2016-05-02 17:04:09 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:04:09 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855198}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 INFO WorkspaceExplorerServiceImpl:188 - end time - 53 msc 0 sec -2016-05-02 17:04:09 DEBUG command:56 - Command execution completed -2016-05-02 17:04:09 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855198}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG command:56 - Command execution completed -2016-05-02 17:04:09 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1855198}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:04:09 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:04:09 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:04:09 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:04:09 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:04:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:04:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.2 ms, state=CONNECTED}] -2016-05-02 17:04:09 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:04:09 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:04:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:04:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:09 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:04:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:04:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:09 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:04:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:04:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:04:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:09 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:04:09 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:04:09 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:04:10 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 17:04:10 DEBUG query:56 - Query completed -2016-05-02 17:04:10 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 17:04:10 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:2127181} -2016-05-02 17:04:10 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244632} -2016-05-02 17:04:10 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1855198}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:04:10 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:1540966} -2016-05-02 17:04:10 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1855198} -2016-05-02 17:04:10 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1855197} -2016-05-02 17:04:10 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:04:10 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:04:10 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:04:10 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 17:04:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:04:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:04:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:04:10 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 17:04:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:10 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:04:10 DEBUG ServiceEngine:193 - get() - start -2016-05-02 17:04:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:04:10 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:04:10 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:04:10 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:04:10 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:04:10 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:04:10 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 17:04:10 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:04:10 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:04:10 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:04:10 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:04:10 DEBUG Operation:173 - get(String) - start -2016-05-02 17:04:10 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:04:10 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:04:10 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:04:10 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:04:10 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:10 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:10 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:10 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@1de67611, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7b8e8aa9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4b319c9e, socketFactory=javax.net.DefaultSocketFactory@26216fa3, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:04:10 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:04:10 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:04:10 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244633}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1855199}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1029277, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:10 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:04:10 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1816907, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:10 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:10 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:10 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2127182}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=926560, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:10 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1540967}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1445915, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:10 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:04:10 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1855200}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG command:56 - Command execution completed -2016-05-02 17:04:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG command:56 - Command execution completed -2016-05-02 17:04:10 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG command:56 - Command execution completed -2016-05-02 17:04:10 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:04:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG command:56 - Command execution completed -2016-05-02 17:04:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG command:56 - Command execution completed -2016-05-02 17:04:10 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:04:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG command:56 - Command execution completed -2016-05-02 17:04:10 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG command:56 - Command execution completed -2016-05-02 17:04:10 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:04:10 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG query:56 - Query completed -2016-05-02 17:04:10 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:04:10 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:04:10 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 17:04:10 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG update:56 - Update completed -2016-05-02 17:04:10 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1855200}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:10 DEBUG query:56 - Query completed -2016-05-02 17:04:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:04:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:04:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:04:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:04:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:04:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:04:11 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:04:11 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 17:04:11 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 17:04:11 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 17:04:11 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:04:11 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:04:11 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:04:11 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:04:11 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 17:04:11 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:04:11 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 17:04:11 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 17:04:11 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:04:11 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:04:11 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:04:11 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:04:11 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:04:11 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:04:11 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:04:11 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:11 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:11 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:11 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@1de67611, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@7b8e8aa9, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4b319c9e, socketFactory=javax.net.DefaultSocketFactory@26216fa3, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:04:11 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:04:11 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:04:11 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1855201}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1941211, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:11 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244634}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:04:11 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:11 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:04:11 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1436646, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:11 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2127183}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=822558, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:04:11 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1540968}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1278965, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:04:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:04:11 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1855202}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG command:56 - Command execution completed -2016-05-02 17:04:11 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG command:56 - Command execution completed -2016-05-02 17:04:11 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG command:56 - Command execution completed -2016-05-02 17:04:11 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:04:11 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:04:11 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG command:56 - Command execution completed -2016-05-02 17:04:11 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG command:56 - Command execution completed -2016-05-02 17:04:11 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:04:11 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1855202}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:04:11 DEBUG query:56 - Query completed -2016-05-02 17:04:11 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2127183} -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244634} -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1540968} -2016-05-02 17:04:11 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1855202}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1855202} -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1855201} -2016-05-02 17:04:11 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:04:11 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:04:11 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:04:11 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:04:11 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:04:11 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 17:04:11 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:04:11 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:04:11 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:244633} -2016-05-02 17:04:11 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1855200}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1855200} -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2127182} -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1540967} -2016-05-02 17:04:11 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1855199} -2016-05-02 17:04:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:04:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:05:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:05:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:06:47 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:06:47 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:06:47 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:06:47 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:06:47 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:06:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:06:47 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:06:47 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@1e20b0f -2016-05-02 17:06:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:06:47 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:06:47 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:06:47 DEBUG TemplateModel:83 - 2016-05-02 17:06:47, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:06:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:06:47 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:06:49 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:06:49 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:06:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:06:49 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:06:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:06:49 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:06:49 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:06:49 DEBUG TemplateModel:83 - 2016-05-02 17:06:49, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:06:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:06:49 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:06:49 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 198 ms -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:06:49 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:06:49 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:06:49 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:06:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:06:50 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@31184a62 -2016-05-02 17:06:50 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@8236567 -2016-05-02 17:06:50 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5ed271e0 -2016-05-02 17:06:50 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@3a905060 -2016-05-02 17:06:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 159 ms -2016-05-02 17:06:50 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:06:50 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:06:50 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:06:50 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:06:50 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:06:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:06:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:06:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:06:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 18 ms -2016-05-02 17:06:50 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:06:50 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:06:50 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:06:50 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:06:50 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:06:50 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:06:50 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:06:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:06:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:06:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:06:50 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 17:06:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:50 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:06:50 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:06:50 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:06:50 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:06:50 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:06:50 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:06:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:06:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:06:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:06:51 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 23 ms -2016-05-02 17:06:51 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:06:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:06:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:51 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:06:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:51 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:06:51 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:06:51 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:06:51 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:06:51 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:06:51 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:06:51 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:06:51 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:06:51 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:06:51 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:06:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:51 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:06:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:06:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:06:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:06:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:52 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:06:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:06:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:54 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:06:54 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:06:54 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:06:54 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:06:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:54 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:06:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:06:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:06:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:54 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:06:54 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:06:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 139 msc 0 sec -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:06:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:06:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:54 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:06:54 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:06:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:54 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:06:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:06:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:06:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 34 ms -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 17:06:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 176 msc 0 sec -2016-05-02 17:06:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:06:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:06:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 17:06:54 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:06:54 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:06:54 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:06:54 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 17:06:54 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 17:06:54 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:06:54 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:06:54 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 30 ms -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 17:06:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:06:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 418 msc 0 sec -2016-05-02 17:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:06:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:06:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:06:58 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:06:58 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:06:58 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:06:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:06:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:06:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:06:58 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:06:58 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:06:58 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:06:58 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:06:58 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:06:58 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:06:58 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:06:58 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:06:58 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:06:58 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:06:58 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:06:58 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:06:58 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:06:58 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:06:58 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:06:58 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:06:58 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:06:58 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:06:58 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:06:58 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:06:58 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:06:58 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:06:58 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:06:58 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:06:58 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:06:58 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:06:58 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:06:58 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:06:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:06:58 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:06:58 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:06:58 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:06:58 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:06:58 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:06:58 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:06:58 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:06:58 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:06:58 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:06:58 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:06:58 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:06:58 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:06:58 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:06:59 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:06:59 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:06:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:06:59 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:06:59 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:06:59 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:06:59 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:06:59 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:06:59 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:06:59 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:06:59 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:06:59 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:06:59 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:06:59 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:06:59 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:06:59 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:06:59 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:06:59 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:06:59 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:06:59 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:06:59 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:06:59 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:06:59 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:06:59 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:06:59 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:06:59 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:06:59 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:06:59 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:06:59 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:06:59 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:06:59 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:06:59 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:06:59 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:06:59 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:06:59 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:06:59 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:06:59 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:06:59 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:06:59 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:06:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:06:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:06:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:06:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:06:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 299 msc 0 sec -2016-05-02 17:06:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:06:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:06:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:06:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:06:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:06:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:06:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:06:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:06:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:06:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:06:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:06:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 219 msc 0 sec -2016-05-02 17:06:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:07:05 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:07:05 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:07:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:07:05 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:07:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:07:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:05 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:07:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:07:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:07:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:07:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:05 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:07:05 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:07:06 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:07:06 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:07:06 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:07:06 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:07:06 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 17:07:06 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 17:07:06 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:07:06 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:07:06 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:07:06 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:07:06 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:07:06 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:07:06 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:07:06 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:07:06 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:07:06 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:07:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:07:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:07:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:07:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:07:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:07:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:07:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:06 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:07:06 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:07:06 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:07:06 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:06 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:07:06 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:07:06 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:06 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:06 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e1d329b6, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@35487673, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@28589359, socketFactory=javax.net.DefaultSocketFactory@4f31ccc0, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:07:06 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:07:06 INFO WorkspaceExplorerServiceImpl:188 - end time - 60 msc 0 sec -2016-05-02 17:07:06 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:07:06 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:07:06 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:07:06 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:07:06 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1855233}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:244665}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1421502, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:06 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:07:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1429642, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:06 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:06 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:06 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:06 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2127214}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1189272, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:06 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1855234}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1540999}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=6741523, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.7 ms, state=CONNECTED}] -2016-05-02 17:07:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855234}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG command:56 - Command execution completed -2016-05-02 17:07:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855234}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG command:56 - Command execution completed -2016-05-02 17:07:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855234}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG command:56 - Command execution completed -2016-05-02 17:07:06 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:07:06 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855234}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG command:56 - Command execution completed -2016-05-02 17:07:06 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855234}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:06 DEBUG command:56 - Command execution completed -2016-05-02 17:07:06 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1855234}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:07:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:07:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:07:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:07:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:07 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:07:07 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:07:07 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:07:07 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:07:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:07:07 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:07:07 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 17:07:07 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:07:07 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:07:07 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:07:07 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:07:07 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:07:07 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:07:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:07:07 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:07:07 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:07:07 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:07:07 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:07:07 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:07:07 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:07 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:07 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:07 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e1d329b6, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@35487673, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@28589359, socketFactory=javax.net.DefaultSocketFactory@4f31ccc0, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:07:07 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:07:07 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:07:07 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244666}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1509330, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:07 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:07:07 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:07 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:07 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1855235}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1478055, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:07 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:07 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2127215}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1357715, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:07:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:07:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:07:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:07:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:07 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:07:07 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:07:07 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1541000}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1815170, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:07:07 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1855236}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855236}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG command:56 - Command execution completed -2016-05-02 17:07:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855236}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG command:56 - Command execution completed -2016-05-02 17:07:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855236}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG command:56 - Command execution completed -2016-05-02 17:07:07 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:07:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855236}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG command:56 - Command execution completed -2016-05-02 17:07:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855236}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG command:56 - Command execution completed -2016-05-02 17:07:07 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1855236}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:07:07 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:07:07 DEBUG query:56 - Query completed -2016-05-02 17:07:07 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 17:07:07 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2127214} -2016-05-02 17:07:07 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:244665} -2016-05-02 17:07:07 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1540999} -2016-05-02 17:07:07 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1855234}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:07:07 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1855234} -2016-05-02 17:07:07 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1855233} -2016-05-02 17:07:07 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:07:07 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:07:07 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 57 msc 0 sec -2016-05-02 17:07:07 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:07:07 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:07:07 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:07:07 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:07:07 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:07:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:07:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:07:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:07:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:07:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:07:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:07:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:07:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:07:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:07 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:07:07 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:07:07 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:07:07 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 17:07:08 DEBUG query:56 - Query completed -2016-05-02 17:07:08 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 17:07:08 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2127215} -2016-05-02 17:07:08 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1855236}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:07:08 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1855236} -2016-05-02 17:07:08 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1541000} -2016-05-02 17:07:08 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1855235} -2016-05-02 17:07:08 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244666} -2016-05-02 17:07:08 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:07:08 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:07:08 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:07:08 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 17:07:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:07:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:07:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:07:08 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 17:07:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:08 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:07:08 DEBUG ServiceEngine:193 - get() - start -2016-05-02 17:07:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:07:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:07:08 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:07:08 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:07:08 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:07:08 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:07:08 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 17:07:08 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:07:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:07:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:07:08 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:07:08 DEBUG Operation:173 - get(String) - start -2016-05-02 17:07:08 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:07:08 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:07:08 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:07:08 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:07:08 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:08 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:08 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e1d329b6, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@35487673, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@28589359, socketFactory=javax.net.DefaultSocketFactory@4f31ccc0, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:07:08 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:07:08 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:07:08 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1855237}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244667}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1076226, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:08 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:07:08 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1459842, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:08 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:08 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:08 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2127216}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1516379, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:08 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1541001}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1258695, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:07:08 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1855238}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG command:56 - Command execution completed -2016-05-02 17:07:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG command:56 - Command execution completed -2016-05-02 17:07:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG command:56 - Command execution completed -2016-05-02 17:07:08 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:07:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG command:56 - Command execution completed -2016-05-02 17:07:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG command:56 - Command execution completed -2016-05-02 17:07:08 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:07:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG command:56 - Command execution completed -2016-05-02 17:07:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG command:56 - Command execution completed -2016-05-02 17:07:08 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:07:08 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG query:56 - Query completed -2016-05-02 17:07:08 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:07:08 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:07:08 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 17:07:08 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG update:56 - Update completed -2016-05-02 17:07:08 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1855238}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG query:56 - Query completed -2016-05-02 17:07:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:07:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:07:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:07:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:07:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:07:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:07:08 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:07:08 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 17:07:08 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 17:07:08 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 17:07:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:07:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:07:08 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:07:08 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:07:08 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 17:07:08 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:07:08 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 17:07:08 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 17:07:08 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:07:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:07:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:07:08 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:07:08 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:07:08 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:07:08 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:07:08 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:08 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:08 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@e1d329b6, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@35487673, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@28589359, socketFactory=javax.net.DefaultSocketFactory@4f31ccc0, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:07:08 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:07:08 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:07:08 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244668}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1389898, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:08 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:07:08 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:08 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:08 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2127217}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1001342, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:08 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1855239}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1338824, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:08 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:07:08 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1541002}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:07:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2470106, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:07:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 17:07:09 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1855240}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855240}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:09 DEBUG command:56 - Command execution completed -2016-05-02 17:07:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855240}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:09 DEBUG command:56 - Command execution completed -2016-05-02 17:07:09 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855240}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:09 DEBUG command:56 - Command execution completed -2016-05-02 17:07:09 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:07:09 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:07:09 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855240}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:09 DEBUG command:56 - Command execution completed -2016-05-02 17:07:09 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855240}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:09 DEBUG command:56 - Command execution completed -2016-05-02 17:07:09 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:07:09 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1855240}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:07:09 DEBUG query:56 - Query completed -2016-05-02 17:07:09 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:07:09 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2127217} -2016-05-02 17:07:09 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244668} -2016-05-02 17:07:09 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1855240}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:07:09 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1541002} -2016-05-02 17:07:09 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1855240} -2016-05-02 17:07:09 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1855239} -2016-05-02 17:07:09 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:07:09 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:07:09 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:07:09 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:07:09 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:07:09 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 17:07:09 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:07:09 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:07:09 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:07:14 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:244667} -2016-05-02 17:07:14 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1855238}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:07:14 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1855238} -2016-05-02 17:07:14 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2127216} -2016-05-02 17:07:14 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1541001} -2016-05-02 17:07:14 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1855237} -2016-05-02 17:07:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:07:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:09:32 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:09:32 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:09:32 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:09:32 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:09:32 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:09:32 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:09:32 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:09:32 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@9390d2d -2016-05-02 17:09:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:09:32 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:09:32 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:09:32 DEBUG TemplateModel:83 - 2016-05-02 17:09:32, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:09:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:09:32 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:09:34 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:09:34 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:09:34 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:09:34 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:09:34 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:09:34 DEBUG TemplateModel:83 - 2016-05-02 17:09:34, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:09:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:09:34 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:09:34 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 164 ms -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:09:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:09:34 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:09:34 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:09:34 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:09:34 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@35d1a2a0 -2016-05-02 17:09:34 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@376645b8 -2016-05-02 17:09:34 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@45ba41c6 -2016-05-02 17:09:34 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@15c9153c -2016-05-02 17:09:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 182 ms -2016-05-02 17:09:35 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:09:35 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:09:35 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:09:35 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:09:35 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:09:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:09:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:09:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 28 ms -2016-05-02 17:09:35 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:09:35 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:09:35 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:09:35 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:09:35 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:09:35 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:09:35 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:09:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:09:35 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 17:09:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:35 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:09:35 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:09:35 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:09:35 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:09:35 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:09:35 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:09:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:09:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:09:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 25 ms -2016-05-02 17:09:36 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:09:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:36 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:09:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:36 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:09:36 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:09:36 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:09:36 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:09:36 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:09:36 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:09:36 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:09:36 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:09:36 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:09:36 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:09:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:36 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:09:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:09:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:09:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:09:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:09:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:09:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:09:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:09:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:38 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:09:38 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:09:38 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:09:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:09:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:09:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:09:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:38 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:09:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:39 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:09:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:09:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:39 INFO WorkspaceExplorerServiceImpl:188 - end time - 132 msc 0 sec -2016-05-02 17:09:39 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:09:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:09:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:09:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:39 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:09:39 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:09:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:39 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:09:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:09:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:09:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 21 ms -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:09:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:09:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:09:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 23 ms -2016-05-02 17:09:39 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:09:39 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:09:39 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:09:39 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:09:39 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:09:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:09:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:09:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:09:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:09:39 INFO WorkspaceExplorerServiceImpl:188 - end time - 440 msc 0 sec -2016-05-02 17:09:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 1134 msc 1 sec -2016-05-02 17:09:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:09:48 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:09:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:09:48 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:09:48 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:09:48 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:09:48 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:09:48 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:09:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:09:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:09:48 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:09:48 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:09:48 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:09:48 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:09:48 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:09:48 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:09:48 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:09:48 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:09:48 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:09:48 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:09:48 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:09:48 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:09:48 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:09:48 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:09:48 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:09:48 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:09:48 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:09:48 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:09:48 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:09:48 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:09:48 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:09:48 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:09:48 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:09:48 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:09:48 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:09:48 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:09:48 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:09:48 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:09:48 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:09:48 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:09:48 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:09:49 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:09:49 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:09:49 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:09:49 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:09:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:09:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:09:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:49 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:09:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:09:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:09:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:09:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:09:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:09:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:09:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:09:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:09:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:09:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:09:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:09:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:09:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:09:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:09:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:09:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:09:49 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:09:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:09:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:09:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:09:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:09:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:09:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:09:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:09:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 228 msc 0 sec -2016-05-02 17:09:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:10:03 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:10:03 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:10:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:10:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:10:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:10:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:03 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:10:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:10:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:10:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:10:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:03 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:10:03 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:10:03 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:10:03 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:10:03 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:03 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:03 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 17:10:03 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 17:10:03 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:10:03 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:10:03 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:10:03 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:10:03 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:10:03 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:03 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:03 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:10:03 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:10:03 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:10:03 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:10:03 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:10:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:03 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:10:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:10:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:10:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:10:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:03 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:10:03 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:03 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:03 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:10:03 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:10:03 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:10:03 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:10:03 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:10:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 69 msc 0 sec -2016-05-02 17:10:03 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:10:03 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:244699}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1552250, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:10:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:10:03 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:10:03 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:03 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:03 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2127247}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1019705, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:03 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1855271}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1389755, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:03 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:03 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1541031}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2719308, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 17:10:03 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1855272}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855272}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG command:56 - Command execution completed -2016-05-02 17:10:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855272}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG command:56 - Command execution completed -2016-05-02 17:10:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855272}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG command:56 - Command execution completed -2016-05-02 17:10:03 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:10:03 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855272}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG command:56 - Command execution completed -2016-05-02 17:10:03 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855272}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:03 DEBUG command:56 - Command execution completed -2016-05-02 17:10:03 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1855272}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 17:10:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 17:10:04 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:10:04 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:10:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:10:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:10:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:10:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:04 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:10:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:10:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:10:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:10:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:04 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:10:04 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:10:04 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:10:04 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:10:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:04 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:04 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 17:10:04 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:10:04 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:10:04 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:10:04 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:10:04 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:10:04 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:10:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:04 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:04 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:10:04 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:10:04 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:10:04 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:10:04 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:04 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:04 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:04 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:10:04 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:10:04 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:10:04 DEBUG query:56 - Query completed -2016-05-02 17:10:04 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 17:10:04 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2127247} -2016-05-02 17:10:04 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:244699} -2016-05-02 17:10:04 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1541031} -2016-05-02 17:10:04 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:1855273}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1855272}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:10:04 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1855272} -2016-05-02 17:10:04 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1855271} -2016-05-02 17:10:04 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:10:04 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:10:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=4212117, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:04 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:10:04 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 17:10:04 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:10:04 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:04 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:04 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:04 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:244700}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1488440, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:04 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2127248}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1494178, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:10:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:10:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:10:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:10:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:04 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:10:04 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:10:04 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1541032}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1596150, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 17:10:04 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1855274}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855274}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG command:56 - Command execution completed -2016-05-02 17:10:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855274}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG command:56 - Command execution completed -2016-05-02 17:10:04 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855274}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG command:56 - Command execution completed -2016-05-02 17:10:04 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:10:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855274}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG command:56 - Command execution completed -2016-05-02 17:10:04 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855274}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 DEBUG command:56 - Command execution completed -2016-05-02 17:10:04 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1855274}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:04 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:10:04 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:10:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 61 msc 0 sec -2016-05-02 17:10:04 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:10:04 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:10:04 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:10:04 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:10:04 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:10:05 DEBUG query:56 - Query completed -2016-05-02 17:10:05 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 17:10:05 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2127248} -2016-05-02 17:10:05 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:244700} -2016-05-02 17:10:05 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1541032} -2016-05-02 17:10:05 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1855274}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:10:05 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1855274} -2016-05-02 17:10:05 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:1855273} -2016-05-02 17:10:05 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:10:05 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:10:05 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:10:05 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 17:10:05 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:05 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:10:05 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:10:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:10:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:05 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:10:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:05 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:10:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:10:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:10:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:05 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:05 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:05 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:05 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 17:10:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:10:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:10:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:10:06 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 17:10:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:06 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:06 DEBUG ServiceEngine:193 - get() - start -2016-05-02 17:10:06 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:06 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:06 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:10:06 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:10:06 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:10:06 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:10:06 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 17:10:06 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:10:06 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:06 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:06 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:06 DEBUG Operation:173 - get(String) - start -2016-05-02 17:10:06 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:10:06 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:10:06 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:10:06 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:10:06 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:06 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:06 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:06 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:10:06 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:10:06 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:10:06 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244701}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3598586, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:06 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:10:06 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:06 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:06 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2127250}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:06 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1855275}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=4045881, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1313221, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:06 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:06 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1541035}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1987278, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 17:10:07 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1855276}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:10:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:07 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG query:56 - Query completed -2016-05-02 17:10:07 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:10:07 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:10:07 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 17:10:07 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG update:56 - Update completed -2016-05-02 17:10:07 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1855276}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG query:56 - Query completed -2016-05-02 17:10:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:07 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:07 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 17:10:07 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 17:10:07 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 17:10:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:07 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:07 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:10:07 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:10:07 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 17:10:07 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:10:07 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 17:10:07 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 17:10:07 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:10:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:07 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:07 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:10:07 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:10:07 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:10:07 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:10:07 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:07 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:07 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:07 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:10:07 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:10:07 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:10:07 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1855277}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=7158707, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:07 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:10:07 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:07 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:07 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244702}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1243095, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:07 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2127251}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=887835, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:07 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1541036}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1475317, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=7.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:10:07 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1855278}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855278}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855278}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855278}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:07 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855278}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855278}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG command:56 - Command execution completed -2016-05-02 17:10:07 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:07 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1855278}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG query:56 - Query completed -2016-05-02 17:10:07 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:10:07 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2127251} -2016-05-02 17:10:07 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244702} -2016-05-02 17:10:07 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1855278}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:10:07 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1541036} -2016-05-02 17:10:07 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1855278} -2016-05-02 17:10:07 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:10:07 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1855277} -2016-05-02 17:10:07 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:07 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:10:07 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:10:07 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:10:07 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 17:10:07 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:10:07 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:10:07 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:10:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 17:10:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 17:10:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 17:10:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 17:10:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 17:10:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:10:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:10:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:10:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:10:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:10:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:10:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:10:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:10:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:10:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:10:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:10:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:10:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:10:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:10:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:10:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:10:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:10:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:10:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 188 msc 0 sec -2016-05-02 17:10:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:10:26 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2127250} -2016-05-02 17:10:26 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1855276}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:10:26 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1855276} -2016-05-02 17:10:26 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1541035} -2016-05-02 17:10:26 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:244701} -2016-05-02 17:10:26 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1855275} -2016-05-02 17:10:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:10:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:10:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:10:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:10:38 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 17:10:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:38 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:38 DEBUG ServiceEngine:193 - get() - start -2016-05-02 17:10:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:38 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:38 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:10:38 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:10:38 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:10:38 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:10:38 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 17:10:38 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:10:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:38 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:38 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:38 DEBUG Operation:173 - get(String) - start -2016-05-02 17:10:38 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:10:38 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:10:38 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:10:38 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:10:38 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:38 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:38 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:38 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:10:38 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:10:38 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:10:38 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1855284}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1002823, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:38 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:10:38 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:38 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:244708}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:38 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1248572, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:38 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2127257}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=789696, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:38 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1541042}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1421156, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:10:38 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1855285}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG command:56 - Command execution completed -2016-05-02 17:10:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG command:56 - Command execution completed -2016-05-02 17:10:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG command:56 - Command execution completed -2016-05-02 17:10:38 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:10:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG command:56 - Command execution completed -2016-05-02 17:10:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG command:56 - Command execution completed -2016-05-02 17:10:38 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG command:56 - Command execution completed -2016-05-02 17:10:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG command:56 - Command execution completed -2016-05-02 17:10:38 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:38 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG query:56 - Query completed -2016-05-02 17:10:38 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:10:38 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:10:38 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 17:10:38 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG update:56 - Update completed -2016-05-02 17:10:38 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:25, serverValue:1855285}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG query:56 - Query completed -2016-05-02 17:10:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:38 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:10:38 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 17:10:38 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 17:10:38 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 17:10:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:38 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:38 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:10:38 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:10:38 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 17:10:38 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:10:38 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 17:10:38 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 17:10:38 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:10:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:10:38 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:10:38 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:10:38 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:10:38 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:10:38 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:10:38 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:38 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:38 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:38 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:10:38 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:10:38 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:10:38 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:244709}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1522870, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:38 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:10:38 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:38 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:38 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2127258}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=890124, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:38 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1855286}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1692618, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:39 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:10:39 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1541043}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1293724, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:10:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:10:39 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1855287}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 DEBUG command:56 - Command execution completed -2016-05-02 17:10:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 DEBUG command:56 - Command execution completed -2016-05-02 17:10:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 DEBUG command:56 - Command execution completed -2016-05-02 17:10:39 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:39 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 DEBUG command:56 - Command execution completed -2016-05-02 17:10:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 DEBUG command:56 - Command execution completed -2016-05-02 17:10:39 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:39 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1855287}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:10:39 DEBUG query:56 - Query completed -2016-05-02 17:10:39 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2127258} -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:244709} -2016-05-02 17:10:39 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1855287}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1541043} -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1855287} -2016-05-02 17:10:39 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1855286} -2016-05-02 17:10:39 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:10:39 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:10:39 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:10:39 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:10:39 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 17:10:39 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:10:39 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:10:39 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:10:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:10:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:10:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:10:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:10:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:10:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:10:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:10:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:10:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:10:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:10:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:10:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:10:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:10:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:10:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2127257} -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:244708} -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1541042} -2016-05-02 17:10:39 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1855285}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1855285} -2016-05-02 17:10:39 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1855284} -2016-05-02 17:10:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:10:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:10:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:10:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:10:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:10:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:10:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:10:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:10:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:10:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:10:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:10:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:10:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 217 msc 0 sec -2016-05-02 17:10:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:11:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:11:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:11:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:11:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:11:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:11:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:11:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:11:11 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:11:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:11:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:11:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:11:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:11:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:11:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:11:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:11:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:11:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:11:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:11:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:11:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:11:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 194 msc 0 sec -2016-05-02 17:11:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:11:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:11:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:11:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:11:16 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:11:16 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:11:16 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:11:16 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:11:16 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:11:16 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:11:16 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:11:16 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:11:16 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:11:16 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:11:16 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:11:16 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:11:16 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:11:16 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:11:16 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:11:16 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:11:16 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:11:16 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:11:16 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:11:16 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:11:16 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:11:16 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:11:16 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:11:16 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:11:16 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:11:16 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:11:16 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:11:16 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:11:16 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:11:16 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:11:16 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:11:16 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:11:16 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:11:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:11:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:11:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:11:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:11:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:11:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:11:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:11:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:11:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:11:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:11:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:11:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:11:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:11:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:11:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:11:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:11:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:11:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:11:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:11:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:11:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:11:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 175 msc 0 sec -2016-05-02 17:11:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:11:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:11:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:11:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:11:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:11:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:11:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:24 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:11:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:11:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:11:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:11:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:24 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:11:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:11:24 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:11:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:11:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:11:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:11:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:11:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:11:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:11:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:11:24 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:11:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:11:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:11:24 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:11:24 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:11:24 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:11:24 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:11:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:11:24 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:11:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:11:24 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:11:24 INFO WorkspaceExplorerServiceImpl:142 - end time - 164 msc 0 sec -2016-05-02 17:11:24 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:12:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:12:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:13:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:13:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:14:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:14:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:15:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:15:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:15:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:15:57 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:16:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:16:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:17:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:17:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:18:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:18:42 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:19:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:19:37 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:20:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:20:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:21:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:21:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:21:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:21:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:21:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:21:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:21:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:21:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:21:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:21:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:21:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:21:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:21:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:21:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:21:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:21:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:21:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:21:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:21:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:21:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:21:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:21:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-02 17:21:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:21:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:21:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:21:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:21:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:42 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:21:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:21:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:21:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:21:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:21:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:21:42 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:21:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:21:42 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:21:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:21:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:21:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:21:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:21:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:21:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:21:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:21:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:21:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 187 msc 0 sec -2016-05-02 17:21:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:21:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:21:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:21:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:21:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:21:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:21:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:21:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:21:43 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:21:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:21:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:21:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:21:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:21:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:21:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:21:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:21:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:21:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:21:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:21:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:21:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:21:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:21:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:21:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:21:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:21:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:21:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:21:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:21:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:21:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 144 msc 0 sec -2016-05-02 17:21:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:22:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:22:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:22:41 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:22:41 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:22:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:22:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:41 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:22:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:22:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:22:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:22:41 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:22:41 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:22:41 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:22:41 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:22:41 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 17:22:41 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 17:22:41 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:22:41 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:22:41 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:22:41 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:22:41 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:22:41 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:22:41 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:22:41 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:22:41 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:22:41 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:22:41 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:22:41 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:41 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:41 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:41 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:22:41 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:22:41 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:22:41 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1855408}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1209895, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:41 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:22:41 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:41 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:41 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:41 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:244830}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1106110, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:41 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:2127379}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=928646, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:41 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1541164}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:1855409}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:34, serverValue:1855409}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG command:56 - Command execution completed -2016-05-02 17:22:41 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3857998, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:34, serverValue:1855409}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}] -2016-05-02 17:22:41 DEBUG command:56 - Command execution completed -2016-05-02 17:22:41 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:34, serverValue:1855409}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG command:56 - Command execution completed -2016-05-02 17:22:41 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:22:41 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:34, serverValue:1855409}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG command:56 - Command execution completed -2016-05-02 17:22:41 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:34, serverValue:1855409}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG command:56 - Command execution completed -2016-05-02 17:22:41 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:34, serverValue:1855409}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:22:41 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:22:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:22:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:22:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:22:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:22:41 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:22:41 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:22:41 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:22:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 64 msc 0 sec -2016-05-02 17:22:41 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:22:41 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:22:41 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:22:42 DEBUG query:56 - Query completed -2016-05-02 17:22:42 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 17:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:2127379} -2016-05-02 17:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:244830} -2016-05-02 17:22:42 INFO connection:71 - Closed connection [connectionId{localValue:34, serverValue:1855409}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:1855409} -2016-05-02 17:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1541164} -2016-05-02 17:22:42 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1855408} -2016-05-02 17:22:42 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:22:42 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:22:42 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:22:42 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 17:22:42 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:22:42 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:22:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:22:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:22:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:22:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:42 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:22:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:22:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:22:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:22:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:22:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:22:42 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:22:42 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:22:42 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:22:42 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:22:42 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 17:22:42 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:22:42 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:22:42 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:22:42 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:22:42 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:22:42 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:22:42 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:22:42 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:22:42 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:22:42 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:22:42 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:22:42 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:22:42 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:42 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:42 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:42 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:22:42 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:22:42 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:22:42 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1855410}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1166427, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:42 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:244831}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:22:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1231671, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:42 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:42 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:42 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:42 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2127382}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=863121, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:22:42 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:22:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:22:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:22:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:22:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:22:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:42 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1541167}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1855411}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855411}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:22:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1222592, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 17:22:42 DEBUG command:56 - Command execution completed -2016-05-02 17:22:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855411}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 DEBUG command:56 - Command execution completed -2016-05-02 17:22:42 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855411}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:22:42 DEBUG command:56 - Command execution completed -2016-05-02 17:22:42 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:22:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855411}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 DEBUG command:56 - Command execution completed -2016-05-02 17:22:42 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855411}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 DEBUG command:56 - Command execution completed -2016-05-02 17:22:42 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1855411}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:42 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:22:42 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:22:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 44 msc 0 sec -2016-05-02 17:22:43 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:22:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:22:43 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:22:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:22:43 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:22:43 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:22:43 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:22:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:43 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:22:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:43 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:22:43 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:22:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:22:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:43 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:22:43 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:22:43 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:22:43 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 17:22:43 DEBUG query:56 - Query completed -2016-05-02 17:22:43 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 17:22:43 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2127382} -2016-05-02 17:22:43 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:244831} -2016-05-02 17:22:43 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1855411}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:22:43 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1541167} -2016-05-02 17:22:43 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1855411} -2016-05-02 17:22:43 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:22:43 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:22:43 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:22:43 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 17:22:43 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1855410} -2016-05-02 17:22:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:22:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:22:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:22:44 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 17:22:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:44 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:22:44 DEBUG ServiceEngine:193 - get() - start -2016-05-02 17:22:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:22:44 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:22:44 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:22:44 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:22:44 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:22:44 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:22:44 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 17:22:44 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:22:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:22:44 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:22:44 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:22:44 DEBUG Operation:173 - get(String) - start -2016-05-02 17:22:44 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:22:44 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:22:44 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:22:44 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:22:44 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:44 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:44 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:22:44 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:22:44 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:42, serverValue:1855412}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:41, serverValue:244832}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1094425, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1211905, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:44 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:22:44 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:44 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:44 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:44, serverValue:2127383}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=951906, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:43, serverValue:1541168}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1276323, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:45, serverValue:1855413}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:22:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:22:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:22:44 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG query:56 - Query completed -2016-05-02 17:22:44 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:22:44 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:22:44 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 17:22:44 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG update:56 - Update completed -2016-05-02 17:22:44 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:45, serverValue:1855413}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG query:56 - Query completed -2016-05-02 17:22:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:22:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:22:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:22:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:22:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:22:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:22:44 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:22:44 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 17:22:44 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 17:22:44 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 17:22:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:22:44 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:22:44 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:22:44 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:22:44 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 17:22:44 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:22:44 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 17:22:44 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 17:22:44 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:22:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:22:44 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:22:44 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:22:44 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:22:44 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:22:44 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:22:44 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:44 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:44 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ac452aad, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e494fdb, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@2f19db04, socketFactory=javax.net.DefaultSocketFactory@4a79fbc4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:22:44 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:22:44 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:46, serverValue:244833}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1269121, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:44 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:22:44 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:44 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:49, serverValue:2127384}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=810316, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:47, serverValue:1855414}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1501687, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:44 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:48, serverValue:1541169}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2014012, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:22:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 17:22:44 INFO connection:71 - Opened connection [connectionId{localValue:50, serverValue:1855415}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1855415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1855415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1855415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:22:44 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:22:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1855415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1855415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG command:56 - Command execution completed -2016-05-02 17:22:44 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:22:44 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:50, serverValue:1855415}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:44 DEBUG query:56 - Query completed -2016-05-02 17:22:44 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:22:44 DEBUG connection:56 - Closing connection connectionId{localValue:49, serverValue:2127384} -2016-05-02 17:22:44 DEBUG connection:56 - Closing connection connectionId{localValue:46, serverValue:244833} -2016-05-02 17:22:44 INFO connection:71 - Closed connection [connectionId{localValue:50, serverValue:1855415}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:22:44 DEBUG connection:56 - Closing connection connectionId{localValue:48, serverValue:1541169} -2016-05-02 17:22:44 DEBUG connection:56 - Closing connection connectionId{localValue:50, serverValue:1855415} -2016-05-02 17:22:44 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:22:44 DEBUG connection:56 - Closing connection connectionId{localValue:47, serverValue:1855414} -2016-05-02 17:22:44 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:22:44 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:22:44 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:22:44 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:22:44 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 17:22:44 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:22:44 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:22:44 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:22:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:22:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:22:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:22:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:22:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:23:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:23:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:23:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:23:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:23:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:23:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:23:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:23:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:23:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:23:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:23:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:23:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:23:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:23:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:23:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:23:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:23:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:23:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:23:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:23:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:23:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:23:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:23:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:23:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:23:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:23:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:23:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:23:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:23:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:23:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:23:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:23:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:23:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:23:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:23:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:23:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:23:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:23:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:23:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:23:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:23:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:23:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:23:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:23:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:23:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:23:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:23:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:24:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:24:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:24:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:24:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:24:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:24:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:24:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:24:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:24:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:24:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:24:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:24:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:24:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:24:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:24:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:24:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 17:24:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:24:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:24:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:24:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:24:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:24:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:24:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:24:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:24:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:24:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:24:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:24:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:24:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:24:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:24:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:24:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:24:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:24:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:24:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:24:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:24:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:24:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:24:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:24:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:24:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:24:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:24:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:24:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:24:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:24:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:24:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:24:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:24:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:24:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:25:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:25:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:25:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:25:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:25:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:25:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:25:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:25:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:25:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:25:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:25:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:25:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:25:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:25:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:25:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:25:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:25:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:25:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:25:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:25:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:25:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:25:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:25:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:27:06 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:27:06 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:27:06 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:27:06 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:27:06 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:27:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:27:06 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:27:06 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3f8a614f -2016-05-02 17:27:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:27:06 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:27:06 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:27:06 DEBUG TemplateModel:83 - 2016-05-02 17:27:06, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:27:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:27:06 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:27:08 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:27:08 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:27:08 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:27:08 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:27:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:08 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:27:08 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:27:08 DEBUG TemplateModel:83 - 2016-05-02 17:27:08, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:27:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:27:08 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:27:08 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 143 ms -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:27:08 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:27:08 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:27:08 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:27:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:27:08 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@214a3203 -2016-05-02 17:27:08 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3a22b994 -2016-05-02 17:27:08 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@6c7ee87d -2016-05-02 17:27:08 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@6d952866 -2016-05-02 17:27:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 114 ms -2016-05-02 17:27:09 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:27:09 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:27:09 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:27:09 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:27:09 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:09 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:27:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:27:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 19 ms -2016-05-02 17:27:09 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:27:09 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:27:09 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:27:09 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:27:09 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:27:09 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:27:09 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:27:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:27:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:27:09 DEBUG DataMinerManagerServiceImpl:391 - getDataMinerWorkArea() -2016-05-02 17:27:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:09 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:27:09 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:27:09 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:27:09 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:27:09 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:27:09 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:27:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 17:27:09 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:27:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:27:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 49 ms -2016-05-02 17:27:10 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:27:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:27:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:10 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:27:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:10 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:27:10 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:27:10 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:27:10 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:27:10 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:27:10 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:27:10 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:27:10 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:27:10 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:27:10 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:27:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:10 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:27:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:27:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:10 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:27:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:27:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:11 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:27:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:27:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:11 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:27:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:27:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:13 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:27:13 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:27:13 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:13 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:13 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:27:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:27:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:27:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:13 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:27:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:13 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:27:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 130 msc 0 sec -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:13 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:27:13 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:27:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:13 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:27:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 183 msc 0 sec -2016-05-02 17:27:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:27:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:27:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:27:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:27:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:27:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 17:27:13 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:27:13 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:27:13 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:27:13 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:27:13 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:27:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:27:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:27:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:27:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:27:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 428 msc 0 sec -2016-05-02 17:27:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:19 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:27:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:27:19 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:27:19 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:27:19 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:27:20 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:27:20 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:27:20 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:27:20 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:27:20 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:27:20 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:27:20 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:27:20 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:27:20 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:27:20 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:27:20 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:27:20 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:27:20 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:27:20 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:27:20 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:27:20 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:27:20 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:27:20 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:27:20 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:27:20 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:27:20 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:27:20 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:27:20 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:27:20 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:27:20 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:27:20 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:27:20 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:27:20 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:27:20 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:27:20 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:27:20 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:27:20 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:27:20 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:27:20 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:27:20 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:27:20 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:27:20 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:27:20 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:27:20 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:27:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:27:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:27:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:27:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:27:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:27:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:27:20 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:27:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:27:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:27:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:27:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:27:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:27:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:27:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:27:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 241 msc 0 sec -2016-05-02 17:27:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:27:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:27:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:27:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:27:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:23 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:27:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:27:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:27:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:27:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:23 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:27:23 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:27:23 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:27:23 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:27:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:23 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:27:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:23 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:27:23 INFO WorkspaceExplorerServiceImpl:142 - end time - 209 msc 0 sec -2016-05-02 17:27:23 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:27:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:32 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:27:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:27:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:27:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:27:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:27:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:27:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:27:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:27:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:27:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:27:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:27:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:27:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:27:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:27:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 172 msc 0 sec -2016-05-02 17:27:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:27:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:27:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:27:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:27:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:27:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:27:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:27:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:27:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:27:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:34 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:27:34 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:27:34 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:27:34 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:27:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:34 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:27:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:34 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:27:34 INFO WorkspaceExplorerServiceImpl:142 - end time - 229 msc 0 sec -2016-05-02 17:27:34 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:27:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:27:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:27:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:27:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:27:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:27:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:27:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:27:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:27:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:27:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:27:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:27:35 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:27:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:27:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:27:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:27:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:27:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:27:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:27:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:27:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:27:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:27:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:27:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:27:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-02 17:27:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:28:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:28:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:28:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:28:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:29:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:29:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:30:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:30:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:31:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:31:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:32:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:32:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:33:28 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:33:28 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:33:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:33:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:33:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:33:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:28 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:33:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:33:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:33:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:33:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:33:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:33:28 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:33:28 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:33:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:33:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:33:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:28 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:33:28 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 17:33:28 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 17:33:28 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:33:28 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:33:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:33:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:33:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:33:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:28 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:33:28 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:33:28 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:33:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:33:28 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:33:28 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:33:28 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:33:28 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:33:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:33:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:33:29 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:33:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:33:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:29 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:33:29 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:33:29 INFO WorkspaceExplorerServiceImpl:188 - end time - 69 msc 0 sec -2016-05-02 17:33:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bfb47774, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@d87d6e5, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@512d5b53, socketFactory=javax.net.DefaultSocketFactory@78c6cfc7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:33:29 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:33:29 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:33:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:33:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:33:29 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1855524}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1620401, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:33:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:29 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:244942}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1658867, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:29 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2127492}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1407405, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:29 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1541276}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2668861, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 17:33:29 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1855526}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855526}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG command:56 - Command execution completed -2016-05-02 17:33:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855526}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG command:56 - Command execution completed -2016-05-02 17:33:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855526}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG command:56 - Command execution completed -2016-05-02 17:33:29 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:33:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855526}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG command:56 - Command execution completed -2016-05-02 17:33:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1855526}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:29 DEBUG command:56 - Command execution completed -2016-05-02 17:33:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1855526}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG query:56 - Query completed -2016-05-02 17:33:30 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 17:33:30 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2127492} -2016-05-02 17:33:30 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1855526}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:33:30 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1541276} -2016-05-02 17:33:30 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:244942} -2016-05-02 17:33:30 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1855526} -2016-05-02 17:33:30 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1855524} -2016-05-02 17:33:30 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:33:30 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:33:30 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:33:30 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 17:33:30 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:33:30 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:33:30 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:33:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:30 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:33:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:33:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:33:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:33:30 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:33:30 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:33:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:33:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:33:30 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 17:33:30 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:33:30 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:33:30 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:33:30 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:33:30 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:33:30 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:33:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:33:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:33:30 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:33:30 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:33:30 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:33:30 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:33:30 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:30 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:30 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:30 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bfb47774, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@d87d6e5, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@512d5b53, socketFactory=javax.net.DefaultSocketFactory@78c6cfc7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:33:30 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:33:30 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:33:30 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:244943}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1300689, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:30 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1855527}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:33:30 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1465482, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:30 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:30 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:30 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2127493}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=903094, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:33:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:33:30 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1541277}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:33:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1255551, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:33:30 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1855528}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855528}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG command:56 - Command execution completed -2016-05-02 17:33:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855528}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG command:56 - Command execution completed -2016-05-02 17:33:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855528}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG command:56 - Command execution completed -2016-05-02 17:33:30 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:33:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855528}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG command:56 - Command execution completed -2016-05-02 17:33:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1855528}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG command:56 - Command execution completed -2016-05-02 17:33:30 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1855528}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:33:30 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:33:30 INFO WorkspaceExplorerServiceImpl:188 - end time - 46 msc 0 sec -2016-05-02 17:33:30 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:33:30 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:33:30 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:33:30 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:33:30 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:33:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:33:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:33:31 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:33:31 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:33:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:33:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:33:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:33:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:31 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:33:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:33:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:31 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:33:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:33:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:31 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:33:31 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:33:31 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:33:31 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 17:33:31 DEBUG query:56 - Query completed -2016-05-02 17:33:31 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 17:33:31 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1855528}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:33:31 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1855528} -2016-05-02 17:33:31 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:244943} -2016-05-02 17:33:31 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:33:31 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:33:31 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:33:31 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 17:33:31 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1855527} -2016-05-02 17:33:31 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1541277} -2016-05-02 17:33:31 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2127493} -2016-05-02 17:33:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:33:31 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:33:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:33:32 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:33:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:33:32 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 17:33:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:32 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:33:32 DEBUG ServiceEngine:193 - get() - start -2016-05-02 17:33:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:33:32 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:33:32 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:33:32 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:33:32 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:33:32 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:33:32 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 17:33:32 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:33:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:33:32 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:33:32 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:33:32 DEBUG Operation:173 - get(String) - start -2016-05-02 17:33:32 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:33:32 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:33:32 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:33:32 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:33:32 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:32 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:32 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bfb47774, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@d87d6e5, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@512d5b53, socketFactory=javax.net.DefaultSocketFactory@78c6cfc7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:33:32 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:33:32 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1855530}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1117438, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:32 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:33:32 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:32 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:32 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:244944}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1394034, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2127494}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=935710, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1541278}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1324352, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1855531}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:33:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:33:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:33:32 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG query:56 - Query completed -2016-05-02 17:33:32 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:33:32 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:33:32 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 17:33:32 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG update:56 - Update completed -2016-05-02 17:33:32 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1855531}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG query:56 - Query completed -2016-05-02 17:33:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:32 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 17:33:32 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 17:33:32 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 17:33:32 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 17:33:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:33:32 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:33:32 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 17:33:32 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:33:32 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 17:33:32 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:33:32 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 17:33:32 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 17:33:32 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:33:32 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:33:32 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:33:32 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:33:32 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:33:32 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:33:32 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:33:32 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:32 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:32 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bfb47774, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@d87d6e5, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@512d5b53, socketFactory=javax.net.DefaultSocketFactory@78c6cfc7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:33:32 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:33:32 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:244945}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1835834, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:32 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1855532}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:32 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:33:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1499601, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:32 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2127495}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=984954, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1855533}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855533}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855533}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1541279}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855533}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1441413, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:33:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:33:32 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:33:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855533}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1855533}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG command:56 - Command execution completed -2016-05-02 17:33:32 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:33:32 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1855533}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:33:32 DEBUG query:56 - Query completed -2016-05-02 17:33:32 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 17:33:32 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2127495} -2016-05-02 17:33:32 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:244945} -2016-05-02 17:33:32 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1541279} -2016-05-02 17:33:32 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1855533}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:33:32 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1855533} -2016-05-02 17:33:32 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:33:32 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1855532} -2016-05-02 17:33:32 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 17:33:32 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:33:32 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:33:32 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:33:32 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 17:33:32 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 17:33:32 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:33:32 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:33:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:33:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:33:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:33:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:33:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:33:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:33:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:33:34 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1541278} -2016-05-02 17:33:34 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1855531}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:33:34 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:244944} -2016-05-02 17:33:34 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2127494} -2016-05-02 17:33:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:34 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1855531} -2016-05-02 17:33:34 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1855530} -2016-05-02 17:33:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:34 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:33:34 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:33:34 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:33:34 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:33:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:33:34 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:33:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:33:34 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:33:34 INFO WorkspaceExplorerServiceImpl:142 - end time - 187 msc 0 sec -2016-05-02 17:33:34 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:33:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:33:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:37 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:33:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:33:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:33:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:33:37 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:33:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:33:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:37 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:33:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:33:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:33:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:33:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:33:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:33:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:33:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:33:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 164 msc 0 sec -2016-05-02 17:33:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:33:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:33:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:33:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:38 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:33:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:33:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:33:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:33:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:33:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:33:38 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:33:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:33:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:33:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:33:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:33:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:33:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:33:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:33:38 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:33:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:33:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:33:38 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:33:38 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:33:38 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:33:38 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:33:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:33:38 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:33:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:33:38 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:33:38 INFO WorkspaceExplorerServiceImpl:142 - end time - 160 msc 0 sec -2016-05-02 17:33:38 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:34:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:34:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:34:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:34:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:34:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:34:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:34:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:34:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:34:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:34:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:34:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:34:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:34:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:34:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:34:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:34:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:34:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:34:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:34:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:34:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:34:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:34:21 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:34:21 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:34:21 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:34:21 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:34:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:34:21 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:34:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:34:21 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:34:21 INFO WorkspaceExplorerServiceImpl:142 - end time - 150 msc 0 sec -2016-05-02 17:34:21 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:34:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:34:26 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:34:26 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:34:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:34:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:26 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:34:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:34:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:34:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:34:26 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:34:26 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:34:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:34:26 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:34:26 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 17:34:26 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 17:34:26 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:34:26 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:34:26 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:34:26 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:34:26 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:34:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:34:26 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:34:26 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:34:26 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:34:26 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:34:26 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:34:26 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:26 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:26 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:26 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bfb47774, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@d87d6e5, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@512d5b53, socketFactory=javax.net.DefaultSocketFactory@78c6cfc7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:34:26 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:34:26 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:34:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:34:26 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:244956}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:34:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1556210, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:26 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:34:26 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:26 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:26 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1855542}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:26 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2127505}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=4983065, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:26 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1092603, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:34:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:34:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:34:26 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1541290}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1213705, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 17:34:26 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1855543}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855543}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG command:56 - Command execution completed -2016-05-02 17:34:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855543}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG command:56 - Command execution completed -2016-05-02 17:34:26 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855543}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG command:56 - Command execution completed -2016-05-02 17:34:26 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:34:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855543}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 DEBUG command:56 - Command execution completed -2016-05-02 17:34:26 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1855543}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:34:26 DEBUG command:56 - Command execution completed -2016-05-02 17:34:26 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1855543}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:26 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 17:34:26 INFO WorkspaceExplorerServiceImpl:188 - end time - 42 msc 0 sec -2016-05-02 17:34:26 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:34:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:34:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:34:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=5.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 17:34:27 DEBUG query:56 - Query completed -2016-05-02 17:34:27 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 17:34:27 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2127505} -2016-05-02 17:34:27 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:244956} -2016-05-02 17:34:27 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1541290} -2016-05-02 17:34:27 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1855543}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:34:27 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1855543} -2016-05-02 17:34:27 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1855542} -2016-05-02 17:34:27 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:34:27 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:34:27 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 17:34:27 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 17:34:27 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:34:27 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:34:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:34:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:27 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:34:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:27 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:34:27 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:34:27 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:34:27 DEBUG ServiceEngine:306 - get() - start -2016-05-02 17:34:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:34:27 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:34:27 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 17:34:27 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 17:34:27 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:34:27 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:34:27 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 17:34:27 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:34:27 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:34:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:34:27 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:34:27 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:34:27 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:34:27 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:34:27 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:34:27 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:27 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:27 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:27 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bfb47774, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@d87d6e5, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@512d5b53, socketFactory=javax.net.DefaultSocketFactory@78c6cfc7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:34:27 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:34:27 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:34:28 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:244957}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1423168, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:28 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1855544}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:34:28 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:28 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1349949, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:28 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:28 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2127507}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=977995, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:34:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:34:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:34:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:34:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:28 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1541291}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1837141, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:34:28 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1855545}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:34:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 17:34:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855545}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG command:56 - Command execution completed -2016-05-02 17:34:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855545}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG command:56 - Command execution completed -2016-05-02 17:34:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855545}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG command:56 - Command execution completed -2016-05-02 17:34:28 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:34:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855545}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG command:56 - Command execution completed -2016-05-02 17:34:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1855545}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG command:56 - Command execution completed -2016-05-02 17:34:28 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1855545}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:34:28 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 17:34:28 INFO WorkspaceExplorerServiceImpl:188 - end time - 60 msc 0 sec -2016-05-02 17:34:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 17:34:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:34:28 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:34:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 17:34:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 17:34:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 17:34:28 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 17:34:28 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:34:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:34:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:28 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:28 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:34:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:34:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:34:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:28 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 17:34:28 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 17:34:28 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 17:34:29 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 17:34:29 DEBUG query:56 - Query completed -2016-05-02 17:34:29 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 17:34:29 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1855545}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:34:29 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1541291} -2016-05-02 17:34:29 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:244957} -2016-05-02 17:34:29 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2127507} -2016-05-02 17:34:29 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1855545} -2016-05-02 17:34:29 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:34:29 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:34:29 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1855544} -2016-05-02 17:34:29 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 17:34:29 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 17:34:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:34:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:34:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:34:29 DEBUG DataMinerManagerServiceImpl:373 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-02 17:34:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:29 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 17:34:29 DEBUG ServiceEngine:193 - get() - start -2016-05-02 17:34:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:34:29 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:34:29 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 17:34:29 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:34:29 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:34:29 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 17:34:29 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 17:34:29 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:34:29 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:34:29 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:34:29 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 17:34:29 DEBUG Operation:173 - get(String) - start -2016-05-02 17:34:29 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:34:29 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:34:29 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:34:29 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:34:29 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:29 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:29 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:29 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bfb47774, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@d87d6e5, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@512d5b53, socketFactory=javax.net.DefaultSocketFactory@78c6cfc7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:34:29 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:34:29 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:34:29 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1855547}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1021893, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:29 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:34:29 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:29 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:29 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:29 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:244958}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2127508}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=998858, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1432649, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:29 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1541292}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1254531, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 17:34:29 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1855548}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG command:56 - Command execution completed -2016-05-02 17:34:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG command:56 - Command execution completed -2016-05-02 17:34:29 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG command:56 - Command execution completed -2016-05-02 17:34:29 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:34:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG command:56 - Command execution completed -2016-05-02 17:34:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG command:56 - Command execution completed -2016-05-02 17:34:29 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 17:34:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG command:56 - Command execution completed -2016-05-02 17:34:29 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG command:56 - Command execution completed -2016-05-02 17:34:29 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 17:34:29 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG query:56 - Query completed -2016-05-02 17:34:29 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 17:34:29 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 17:34:29 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 17:34:29 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG update:56 - Update completed -2016-05-02 17:34:29 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1855548}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:29 DEBUG query:56 - Query completed -2016-05-02 17:34:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:34:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:34:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:34:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:34:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:34:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:34:29 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 17:34:30 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-02 17:34:30 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 17:34:30 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 17:34:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:34:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:34:30 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 17:34:30 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 17:34:30 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 17:34:30 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 17:34:30 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 17:34:30 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 17:34:30 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 17:34:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 17:34:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 17:34:30 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 17:34:30 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 17:34:30 DEBUG MongoIO:77 - open mongo connection -2016-05-02 17:34:30 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 17:34:30 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:30 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:30 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:30 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bfb47774, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@d87d6e5, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@512d5b53, socketFactory=javax.net.DefaultSocketFactory@78c6cfc7, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 17:34:30 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 17:34:30 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 17:34:30 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:244959}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1192110, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:30 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 17:34:30 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:30 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 17:34:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:30 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1855549}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2127509}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1432443, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:30 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=859034, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 17:34:30 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1541293}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1726769, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 17:34:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 17:34:30 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1855550}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855550}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG command:56 - Command execution completed -2016-05-02 17:34:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855550}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG command:56 - Command execution completed -2016-05-02 17:34:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855550}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG command:56 - Command execution completed -2016-05-02 17:34:30 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 17:34:30 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 17:34:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855550}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG command:56 - Command execution completed -2016-05-02 17:34:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1855550}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG command:56 - Command execution completed -2016-05-02 17:34:30 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 17:34:30 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1855550}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 17:34:30 DEBUG query:56 - Query completed -2016-05-02 17:34:30 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 17:34:30 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2127509} -2016-05-02 17:34:30 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:244959} -2016-05-02 17:34:30 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1855550}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:34:30 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1855550} -2016-05-02 17:34:30 INFO MongoIO:508 - Mongo has been closed -2016-05-02 17:34:30 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1855549} -2016-05-02 17:34:30 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 17:34:30 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1541293} -2016-05-02 17:34:30 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 17:34:30 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 17:34:30 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 17:34:30 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 17:34:30 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 17:34:30 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 17:34:30 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 17:34:36 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2127508} -2016-05-02 17:34:36 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:244958} -2016-05-02 17:34:36 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1855548}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 17:34:36 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1541292} -2016-05-02 17:34:36 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1855548} -2016-05-02 17:34:36 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1855547} -2016-05-02 17:35:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:35:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:36:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:36:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:37:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:37:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:38:06 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:39:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:39:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:39:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:39:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:40:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:40:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:41:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:41:46 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:42:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:42:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:43:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:43:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:44:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:44:31 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:45:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:45:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:46:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:46:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:47:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:47:16 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:49:30 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:49:30 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:49:30 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:49:30 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:49:30 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:49:30 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:49:30 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:49:30 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4a0ec34 -2016-05-02 17:49:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:49:30 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:49:30 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:49:30 DEBUG TemplateModel:83 - 2016-05-02 17:49:30, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:49:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:49:30 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:49:32 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:49:32 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:49:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:49:32 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:49:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:49:32 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:49:32 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:49:32 DEBUG TemplateModel:83 - 2016-05-02 17:49:32, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:49:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:49:32 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:49:33 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 132 ms -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:49:33 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:49:33 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:49:33 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:49:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:49:33 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@732ef28 -2016-05-02 17:49:33 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4a6922df -2016-05-02 17:49:33 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4b9410b3 -2016-05-02 17:49:33 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@6f3e99f0 -2016-05-02 17:49:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 127 ms -2016-05-02 17:49:33 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:49:33 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:49:33 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:49:33 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:49:33 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:49:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:49:33 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:49:33 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:49:33 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-02 17:49:33 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:49:33 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:49:33 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:49:33 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:49:34 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:49:34 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:49:34 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:49:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:49:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:49:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:49:34 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 17:49:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:34 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:49:34 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:49:34 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:49:34 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:49:34 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:49:34 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:49:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:49:34 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:49:34 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:49:34 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 23 ms -2016-05-02 17:49:34 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:49:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:49:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:34 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:49:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:34 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:49:34 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:49:34 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:49:35 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:49:35 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:49:35 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:49:35 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:49:35 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:49:35 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:35 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:35 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:35 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:35 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:49:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:36 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:49:36 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:49:36 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:49:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:49:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:49:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:49:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:36 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:49:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:49:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:37 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:49:37 INFO WorkspaceExplorerServiceImpl:188 - end time - 120 msc 0 sec -2016-05-02 17:49:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:49:37 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:49:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:49:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:37 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:49:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:37 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:49:37 INFO WorkspaceExplorerServiceImpl:188 - end time - 150 msc 0 sec -2016-05-02 17:49:37 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:49:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:38 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 17:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:49:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:49:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-02 17:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 17:49:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:49:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:49:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 17:49:38 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:49:38 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:49:38 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:49:38 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 17:49:38 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 17:49:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:49:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:49:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 17:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 17:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 17:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 17:49:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:38 INFO WorkspaceExplorerServiceImpl:188 - end time - 351 msc 0 sec -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:49:41 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:49:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:49:41 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:49:41 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:49:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:49:41 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:49:41 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:49:41 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:49:41 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:49:41 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:49:41 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:49:41 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:49:41 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:49:41 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:49:41 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:49:41 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:49:41 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:49:41 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:49:41 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:49:41 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:49:41 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:49:41 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:49:41 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:49:41 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:49:41 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:49:41 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:49:41 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:49:41 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:49:41 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:49:41 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:49:41 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:49:41 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:49:41 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:49:41 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:49:41 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:49:41 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:49:41 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:49:41 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:49:41 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:49:41 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:49:41 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:49:41 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:49:41 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:49:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:49:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:49:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:41 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:49:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:41 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:49:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:49:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:49:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:49:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:49:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:49:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:49:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:49:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:49:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:49:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:49:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:49:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:49:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:49:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:49:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 222 msc 0 sec -2016-05-02 17:49:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:49:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:49:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:49:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:49:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:49:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:49:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:49:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:49:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:49:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:49:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:49:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:49:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:49:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:49:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:49:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:49:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:49:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:49:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:49:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:49:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:49:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:49:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:49:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:49:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:49:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:49:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:49:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 209 msc 0 sec -2016-05-02 17:49:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:50:34 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:50:34 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:50:34 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:50:35 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:50:35 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:50:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:50:35 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:50:35 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4adb8148 -2016-05-02 17:50:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:35 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:50:35 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:50:35 DEBUG TemplateModel:83 - 2016-05-02 17:50:35, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:50:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:50:35 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:50:36 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:50:36 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:50:36 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:50:36 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:50:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:50:36 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:50:36 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:50:36 DEBUG TemplateModel:83 - 2016-05-02 17:50:36, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:50:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:50:36 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:50:37 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 149 ms -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:50:37 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:50:37 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:50:37 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:50:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:50:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7343ed9d -2016-05-02 17:50:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6a1ca744 -2016-05-02 17:50:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4f4f23e6 -2016-05-02 17:50:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@6be90557 -2016-05-02 17:50:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 108 ms -2016-05-02 17:50:37 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:50:37 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:50:37 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:50:37 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:50:37 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:50:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:50:37 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:50:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:50:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 16 ms -2016-05-02 17:50:37 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:50:37 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:50:37 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:50:37 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:50:38 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:50:38 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:50:38 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:50:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:50:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:50:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:50:38 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 17:50:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:38 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:50:38 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:50:38 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:50:38 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:50:38 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:50:38 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:50:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 17:50:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:50:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:50:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 20 ms -2016-05-02 17:50:38 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:50:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:50:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:38 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:50:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:38 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:50:38 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:50:38 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:50:39 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:50:39 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:50:39 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:50:39 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:50:39 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:50:39 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:50:39 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:50:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:39 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:50:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:50:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:40 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:50:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:40 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:50:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:40 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:50:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:50:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:50:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:50:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:50:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:41 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:50:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:41 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:50:41 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:50:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 131 msc 0 sec -2016-05-02 17:50:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:50:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:50:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:41 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:50:41 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:50:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:41 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:50:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:50:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 158 msc 0 sec -2016-05-02 17:50:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 35 ms -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:50:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:50:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:50:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 17:50:41 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:50:41 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:50:41 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:50:41 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:50:41 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:50:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:50:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:50:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:50:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 403 msc 0 sec -2016-05-02 17:50:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:50:47 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:50:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:50:47 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:50:47 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:50:47 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:50:47 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:50:47 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:50:47 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:50:47 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:50:47 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:50:47 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:50:47 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:50:47 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:50:47 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:50:47 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:50:47 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:50:47 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:50:47 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:50:47 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:50:47 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:50:47 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:50:47 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:50:47 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:50:47 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:50:47 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:50:47 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:50:47 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:50:47 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:50:47 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:50:47 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:50:47 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:50:47 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:50:47 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:50:47 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:50:47 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:50:47 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:50:47 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:50:47 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:50:47 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:50:47 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:50:47 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:50:47 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:50:47 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:50:47 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:50:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:50:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:48 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:50:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:50:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:50:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:50:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:50:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:50:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:50:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:50:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:50:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:48 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:50:48 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:50:48 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:50:48 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:50:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:50:48 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:50:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:50:48 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:50:48 INFO WorkspaceExplorerServiceImpl:142 - end time - 201 msc 0 sec -2016-05-02 17:50:48 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:50:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:50:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:50 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:50:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:50:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:50:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:50:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:50:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:50:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:50:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:50:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:50:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:50:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:50:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:50:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:50:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:50:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:50:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:50:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:50:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:50:50 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:50:50 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:50:50 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:50:50 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:50:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:50:50 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:50:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:50:50 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:50:50 INFO WorkspaceExplorerServiceImpl:142 - end time - 241 msc 0 sec -2016-05-02 17:50:50 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:51:46 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:51:46 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:51:46 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:51:46 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:51:46 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:51:46 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:51:46 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:51:46 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@405cbddd -2016-05-02 17:51:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:51:46 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:51:46 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:51:46 DEBUG TemplateModel:83 - 2016-05-02 17:51:46, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:51:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:51:46 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:51:48 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:51:48 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:51:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:51:48 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:51:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:51:48 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:51:48 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:51:48 DEBUG TemplateModel:83 - 2016-05-02 17:51:48, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:51:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:51:48 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:51:48 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 150 ms -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:51:48 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:51:48 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:51:48 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:51:49 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:51:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@5a75c609 -2016-05-02 17:51:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@54bdf9b7 -2016-05-02 17:51:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@77595f2e -2016-05-02 17:51:49 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@7830a8cc -2016-05-02 17:51:49 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 124 ms -2016-05-02 17:51:49 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:51:49 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:51:49 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:51:49 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:51:49 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:51:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:51:49 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:51:49 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:51:49 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 22 ms -2016-05-02 17:51:49 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:51:49 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:51:49 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:51:49 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:51:49 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:51:49 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:51:49 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:51:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:51:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:51:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:51:49 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 17:51:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:49 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:51:49 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:51:49 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:51:49 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:51:49 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:51:49 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:51:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 17:51:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:51:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:51:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 17:51:50 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:51:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:51:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:50 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:51:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:50 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:51:50 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:51:50 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:51:50 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:51:50 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:51:50 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:51:50 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:51:50 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:51:50 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:51:50 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:51:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:51 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:51:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:51:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:51 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:51:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:51:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:51 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:51:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:51:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:51 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:51:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:51:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:52 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:51:52 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:51:52 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:51:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:51:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:52 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:51:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:51:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:51:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:52 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:51:52 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:51:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 115 msc 0 sec -2016-05-02 17:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 17:51:52 DEBUG ASLSession:458 - Getting security token: null in thread 28 -2016-05-02 17:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 17:51:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:52 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:51:52 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:51:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:52 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:51:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:51:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 164 msc 0 sec -2016-05-02 17:51:52 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:51:52 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:51:53 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 21 ms -2016-05-02 17:51:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:51:53 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:51:53 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:51:53 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 20 ms -2016-05-02 17:51:53 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:51:53 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:51:53 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:51:53 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:51:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:51:53 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:51:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:51:53 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:51:53 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:51:53 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 17:51:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:51:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:51:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:51:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:51:53 INFO WorkspaceExplorerServiceImpl:188 - end time - 431 msc 0 sec -2016-05-02 17:51:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:51:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:51:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:51:57 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:51:57 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:51:57 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:51:58 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:51:58 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:51:58 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:51:58 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:51:58 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:51:58 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:51:58 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:51:58 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:51:58 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:51:58 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:51:58 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:51:58 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:51:58 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:51:58 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:51:58 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:51:58 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:51:58 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:51:58 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:51:58 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:51:58 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:51:58 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:51:58 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:51:58 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:51:58 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:51:58 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:51:58 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:51:58 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:51:58 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:51:58 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:51:58 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:51:58 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:51:58 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:51:58 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:51:58 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:51:58 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:51:58 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:51:58 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:51:58 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:51:58 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:51:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:51:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 17:51:58 DEBUG ASLSession:458 - Getting security token: null in thread 28 -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 28 -2016-05-02 17:51:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:51:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:51:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:51:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:51:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:51:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:51:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:51:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:51:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:51:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:51:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:51:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:51:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:51:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:51:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:51:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:51:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:51:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:51:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:51:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:51:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:51:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:51:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:51:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:51:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:51:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:51:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 1224 msc 1 sec -2016-05-02 17:51:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:52:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:52:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:52:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:52:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:52:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:52:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:52:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:52:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:52:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:52:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:52:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:52:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:52:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:52:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:52:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:52:00 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:52:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:52:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:52:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:52:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:52:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:52:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:52:00 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:52:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:52:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:52:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:52:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:52:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:52:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:52:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:52:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:52:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:52:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:52:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:52:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:52:00 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:52:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:52:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:52:00 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:52:01 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:52:01 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:52:01 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:52:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:52:01 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:52:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:52:01 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:52:01 INFO WorkspaceExplorerServiceImpl:142 - end time - 226 msc 0 sec -2016-05-02 17:52:01 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:53:06 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:53:06 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:53:06 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:53:07 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:53:07 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:53:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:53:07 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:53:07 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@11f501e7 -2016-05-02 17:53:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:53:07 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:53:07 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:53:07 DEBUG TemplateModel:83 - 2016-05-02 17:53:07, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:53:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:53:07 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:53:08 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:53:08 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:53:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:53:08 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:53:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:53:08 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:53:08 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:53:08 DEBUG TemplateModel:83 - 2016-05-02 17:53:08, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:53:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:53:08 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:53:09 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 188 ms -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:53:09 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:53:09 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:53:09 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:53:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:53:09 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@282a1656 -2016-05-02 17:53:09 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@45ba41c6 -2016-05-02 17:53:09 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@501162b0 -2016-05-02 17:53:09 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@449d2f28 -2016-05-02 17:53:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 109 ms -2016-05-02 17:53:09 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:53:09 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:53:09 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:53:09 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:53:09 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:53:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:53:09 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:53:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:53:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 21 ms -2016-05-02 17:53:09 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:53:09 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:53:09 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:53:09 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:53:10 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:53:10 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:53:10 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:53:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:53:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:53:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:53:10 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 17:53:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:10 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:53:10 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:53:10 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:53:10 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:53:10 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:53:10 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:53:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:53:10 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:53:10 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:53:10 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 17:53:10 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:53:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:53:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:10 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:53:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:10 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:53:10 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:53:10 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:53:10 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:53:11 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:53:11 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:53:11 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:53:11 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:53:11 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:11 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:53:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:53:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:11 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:53:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:53:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:11 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:53:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:53:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:11 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:53:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:53:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:13 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:53:13 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:53:13 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:53:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:53:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:13 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:53:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:13 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:53:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:53:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:53:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:13 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:53:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:13 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:53:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:13 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:53:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 129 msc 0 sec -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:53:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:53:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 23 ms -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 17:53:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:53:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:53:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 17:53:13 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:53:13 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:53:13 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:53:13 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 17:53:13 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 17:53:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:53:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:53:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 17:53:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 466 msc 0 sec -2016-05-02 17:53:14 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:53:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 1092 msc 1 sec -2016-05-02 17:53:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:53:16 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:53:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:53:16 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:53:16 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:53:16 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:53:17 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:53:17 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:53:17 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:53:17 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:53:17 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:53:17 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:53:17 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:53:17 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:53:17 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:53:17 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:53:17 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:53:17 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:53:17 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:53:17 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:53:17 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:53:17 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:53:17 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:53:17 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:53:17 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:53:17 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:53:17 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:53:17 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:53:17 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:53:17 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:53:17 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:53:17 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:53:17 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:53:17 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:53:17 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:53:17 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:53:17 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:53:17 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:53:17 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:53:17 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:53:17 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:53:17 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:53:17 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:53:17 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:53:17 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:53:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:53:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:53:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:53:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:53:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:53:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:53:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:53:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:53:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:53:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:53:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:53:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:53:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:53:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:53:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:53:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:53:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:53:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 260 msc 0 sec -2016-05-02 17:53:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:53:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:53:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:53:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:53:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:22 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:53:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:53:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:53:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:53:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:53:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:22 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:53:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:53:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:53:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:53:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:53:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:53:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:53:23 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:53:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:53:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:53:23 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:53:23 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:53:23 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:53:23 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:53:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:53:23 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:53:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:53:23 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:53:23 INFO WorkspaceExplorerServiceImpl:142 - end time - 204 msc 0 sec -2016-05-02 17:53:23 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:54:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:54:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:55:00 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:55:00 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:55:00 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:55:00 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:55:00 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:55:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:55:00 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:55:01 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@13fd80d4 -2016-05-02 17:55:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:55:01 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:55:01 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:55:01 DEBUG TemplateModel:83 - 2016-05-02 17:55:01, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:55:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:55:01 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:55:02 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:55:02 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:55:02 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:55:02 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:55:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:55:02 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:55:02 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:55:02 DEBUG TemplateModel:83 - 2016-05-02 17:55:02, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:55:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:55:02 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:55:03 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 158 ms -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:55:03 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:55:03 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:55:03 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:55:03 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:55:03 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@76f7d020 -2016-05-02 17:55:03 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4b7ceea0 -2016-05-02 17:55:03 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@6a607e58 -2016-05-02 17:55:03 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4d1da123 -2016-05-02 17:55:03 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 171 ms -2016-05-02 17:55:03 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:55:03 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:55:03 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:55:03 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:55:03 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:55:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:55:03 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:55:03 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:55:03 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-02 17:55:03 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:55:03 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:55:03 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:55:03 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:55:04 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:55:04 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:55:04 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:55:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:55:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:55:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:55:04 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 17:55:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:55:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:55:04 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:55:04 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:55:04 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:55:04 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:55:04 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:55:04 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:55:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 17:55:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:55:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:55:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 17:55:04 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:55:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:55:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:55:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:55:04 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:55:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:55:04 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:55:04 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:55:04 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:55:04 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:55:04 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:55:04 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:55:05 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:55:05 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:55:05 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:55:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:55:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:55:05 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:55:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:55:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:55:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:55:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:55:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:55:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:55:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:55:05 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:55:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:55:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:55:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:55:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:55:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:55:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:55:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:55:05 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:55:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:55:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:55:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:55:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:55:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:55:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:55:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:55:05 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:55:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:55:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:55:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:55:07 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:55:07 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:55:07 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:55:07 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:55:07 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:55:07 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:55:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 128 msc 0 sec -2016-05-02 17:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:55:07 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:55:07 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:55:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:55:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:55:07 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:55:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:55:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 175 msc 0 sec -2016-05-02 17:55:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:55:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:55:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:55:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:55:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 21 ms -2016-05-02 17:55:07 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:55:07 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:55:07 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:55:07 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:55:07 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:55:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:55:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:55:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 17:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:55:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 526 msc 0 sec -2016-05-02 17:55:58 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:55:58 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:55:58 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:55:58 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:55:58 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:55:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:55:58 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:55:58 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@5a8a2980 -2016-05-02 17:55:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:55:58 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:55:58 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:55:58 DEBUG TemplateModel:83 - 2016-05-02 17:55:58, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:55:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:55:58 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:56:00 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:56:00 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:56:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:56:00 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:56:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:56:00 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:56:00 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:56:00 DEBUG TemplateModel:83 - 2016-05-02 17:56:00, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:56:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:56:00 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:56:00 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 137 ms -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:56:00 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:56:00 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:56:00 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:56:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:56:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@496e6c3d -2016-05-02 17:56:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@469e42ec -2016-05-02 17:56:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@3988fd25 -2016-05-02 17:56:00 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@5a6e08a4 -2016-05-02 17:56:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 114 ms -2016-05-02 17:56:01 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:56:01 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:56:01 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:56:01 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:56:01 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:56:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:56:01 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:56:01 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:56:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 18 ms -2016-05-02 17:56:01 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:56:01 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:56:01 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:56:01 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:56:01 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:56:01 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:56:01 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:56:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:56:01 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:56:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:56:01 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 17:56:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:01 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:56:01 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:56:01 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:56:01 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:56:01 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:56:01 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:56:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 17:56:01 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:56:01 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:56:01 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 25 ms -2016-05-02 17:56:02 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:56:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:56:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:02 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:56:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:02 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:56:02 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:56:02 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:56:02 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:56:02 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:56:02 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:56:02 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:56:02 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:56:02 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:56:02 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:56:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:02 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:56:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:56:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:02 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:56:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:56:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:02 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:56:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:56:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:56:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:56:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:04 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:56:04 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:56:04 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:56:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:56:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:04 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:56:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:56:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:04 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:56:04 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:56:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 131 msc 0 sec -2016-05-02 17:56:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:56:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:56:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:56:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:04 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:56:04 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:56:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:05 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:56:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:56:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:56:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:56:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 27 ms -2016-05-02 17:56:05 INFO WorkspaceExplorerServiceImpl:188 - end time - 169 msc 0 sec -2016-05-02 17:56:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:56:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:56:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:56:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 20 ms -2016-05-02 17:56:05 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:56:05 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:56:05 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:56:05 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:56:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:56:05 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:56:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:56:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:56:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:56:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 23 ms -2016-05-02 17:56:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:56:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:56:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:56:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:05 INFO WorkspaceExplorerServiceImpl:188 - end time - 424 msc 0 sec -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:56:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:56:09 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:56:09 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:56:09 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:56:09 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:56:09 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:56:09 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:56:09 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:56:09 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:56:09 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:56:09 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:56:09 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:56:09 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:56:09 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:56:09 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:56:09 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:56:09 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:56:09 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:56:09 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:56:09 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:56:09 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:56:09 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:56:09 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:56:09 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:56:09 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:56:09 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:56:09 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:56:09 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:56:09 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:56:09 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:56:09 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:56:09 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:56:09 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:56:09 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:56:09 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:56:09 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:56:09 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:56:09 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:56:09 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:56:09 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:56:09 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:56:09 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:56:09 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:56:09 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:56:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:56:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:09 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:56:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:56:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:56:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:56:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:56:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:56:09 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:56:09 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:56:09 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:56:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:09 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:56:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:09 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:56:09 INFO WorkspaceExplorerServiceImpl:142 - end time - 219 msc 0 sec -2016-05-02 17:56:09 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:56:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:56:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:56:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:56:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:56:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:56:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:56:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:56:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:56:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:56:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:56:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:56:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:56:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:56:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:56:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:56:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:56:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 217 msc 0 sec -2016-05-02 17:56:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:56:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:56:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:56:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:56:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:56:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:56:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:56:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:56:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:56:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:56:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:56:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 176 msc 0 sec -2016-05-02 17:56:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:56:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:56:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:56:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:56:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:56:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:56:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:56:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:56:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:56:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:56:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:56:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:56:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:56:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 225 msc 0 sec -2016-05-02 17:56:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:56:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:56:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:56:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:56:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:56:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:56:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:56:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:56:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:56:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:56:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:56:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:56:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:56:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:56:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:56:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:56:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:56:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:56:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:56:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:56:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:56:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:56:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:56:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:56:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:56:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 202 msc 0 sec -2016-05-02 17:56:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:56:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 17:56:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 17:57:39 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 17:57:39 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 17:57:39 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 17:57:39 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:57:39 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:57:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:57:39 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:57:39 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@72b58fbb -2016-05-02 17:57:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:57:39 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:57:39 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:57:39 DEBUG TemplateModel:83 - 2016-05-02 17:57:39, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:57:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:57:39 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 17:57:41 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 17:57:41 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 17:57:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:57:41 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 17:57:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:57:41 INFO ASLSession:352 - Logging the entrance -2016-05-02 17:57:41 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 17:57:41 DEBUG TemplateModel:83 - 2016-05-02 17:57:41, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 17:57:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:57:41 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:57:41 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 156 ms -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 17:57:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 17:57:41 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 17:57:41 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:57:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 17:57:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2657c0ad -2016-05-02 17:57:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@65125ee2 -2016-05-02 17:57:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@50fe876a -2016-05-02 17:57:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@2848cd9d -2016-05-02 17:57:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 107 ms -2016-05-02 17:57:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 17:57:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 17:57:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 17:57:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 17:57:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 17:57:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:57:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:57:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 17:57:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-02 17:57:41 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 17:57:41 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:57:41 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 17:57:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:57:42 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:57:42 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:57:42 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:57:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:57:42 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:57:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:57:42 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 17:57:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:42 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 17:57:42 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 17:57:42 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 17:57:42 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 17:57:42 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 17:57:42 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 17:57:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 17:57:42 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:57:42 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 17:57:42 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 17:57:42 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 17:57:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:57:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:42 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 17:57:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:42 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 17:57:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:57:42 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 17:57:43 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:57:43 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:57:43 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 17:57:43 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 17:57:43 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 17:57:43 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 17:57:43 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 17:57:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:43 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 17:57:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 17:57:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:43 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:57:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 17:57:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:43 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:57:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 17:57:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:44 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 17:57:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 17:57:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 17:57:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 17:57:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 17:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:57:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:57:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:44 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 17:57:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:44 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 17:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:57:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:57:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 116 msc 0 sec -2016-05-02 17:57:44 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 17:57:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:44 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 17:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:57:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:57:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:44 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 17:57:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 17:57:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:57:45 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:57:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:57:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-02 17:57:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 17:57:45 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:57:45 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 17:57:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 17:57:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 24 ms -2016-05-02 17:57:45 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 17:57:45 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 17:57:45 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 17:57:45 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 17:57:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 17:57:45 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 17:57:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 17:57:45 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 17:57:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 17:57:45 INFO WorkspaceExplorerServiceImpl:188 - end time - 233 msc 0 sec -2016-05-02 17:57:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 17:57:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 17:57:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 17:57:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 17:57:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:57:45 INFO WorkspaceExplorerServiceImpl:188 - end time - 424 msc 0 sec -2016-05-02 17:57:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:57:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:57:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 17:57:56 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 17:57:56 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:57:56 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 17:57:56 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 17:57:56 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 17:57:56 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 17:57:56 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 17:57:56 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 17:57:56 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 17:57:56 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 17:57:56 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 17:57:56 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 17:57:56 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 17:57:56 DEBUG WPS2SM:204 - Schema: null -2016-05-02 17:57:56 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 17:57:56 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:57:56 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 17:57:56 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 17:57:56 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 17:57:56 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 17:57:56 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 17:57:56 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 17:57:56 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 17:57:56 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 17:57:56 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:57:56 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 17:57:56 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 17:57:56 DEBUG WPS2SM:92 - WPS type: -2016-05-02 17:57:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 17:57:56 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 17:57:56 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 17:57:56 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 17:57:56 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 17:57:56 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 17:57:56 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 17:57:56 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 17:57:56 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 17:57:56 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 17:57:56 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 17:57:56 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 17:57:56 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 17:57:56 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:57:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:57:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:57 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:57:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:57:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:57:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:57:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:57:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:57:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:57 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:57:57 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:57:57 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:57:57 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:57:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:57:57 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:57:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:57:57 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:57:57 INFO WorkspaceExplorerServiceImpl:142 - end time - 228 msc 0 sec -2016-05-02 17:57:57 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:57:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:57:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:57:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:57:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:57:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:57:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:57:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:57:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:57:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 17:57:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:57:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:57:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:57:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:57:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:57:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:57:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:57:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:57:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:57:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:57:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:57:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:57:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:57:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:57:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:57:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:57:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:57:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:57:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:57:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:57:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 216 msc 0 sec -2016-05-02 17:57:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:58:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:58:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:58:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:58:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:58:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:58:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:58:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:58:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:58:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:58:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:58:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:58:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:58:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:58:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:58:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:58:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:58:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:58:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:58:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:58:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:58:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:58:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:58:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:58:05 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 17:58:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:58:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:58:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:58:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:58:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:58:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:58:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:58:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:58:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:58:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:58:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:58:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:58:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:58:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:58:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:58:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:58:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 202 msc 0 sec -2016-05-02 17:58:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:58:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:58:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:58:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:58:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:58:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:58:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 17:58:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:58:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:58:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:58:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:58:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:58:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 17:58:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:58:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:58:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:58:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:58:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:58:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 17:58:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 17:58:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 17:58:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 17:58:05 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 17:58:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 17:58:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 17:58:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 17:58:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 17:58:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 17:58:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:58:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 17:58:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 17:58:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 17:58:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 193 msc 0 sec -2016-05-02 17:58:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 18:51:55 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 18:51:55 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 18:51:55 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 18:51:55 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 18:51:55 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 18:51:55 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 18:51:55 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 18:51:55 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@7ed91589 -2016-05-02 18:51:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 18:51:55 INFO ASLSession:352 - Logging the entrance -2016-05-02 18:51:55 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 18:51:55 DEBUG TemplateModel:83 - 2016-05-02 18:51:55, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 18:51:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:51:55 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 18:51:58 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 18:51:58 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 18:51:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:51:58 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 18:51:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:51:58 INFO ASLSession:352 - Logging the entrance -2016-05-02 18:51:58 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 18:51:58 DEBUG TemplateModel:83 - 2016-05-02 18:51:58, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 18:51:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:51:58 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 18:51:58 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 117 ms -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 18:51:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 18:51:58 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 18:51:59 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:51:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 18:51:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@76ff016b -2016-05-02 18:51:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@5b7ea73a -2016-05-02 18:51:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@6c623143 -2016-05-02 18:51:59 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@779509a0 -2016-05-02 18:51:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 200 ms -2016-05-02 18:51:59 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 18:51:59 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 18:51:59 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 18:51:59 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 18:51:59 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 18:51:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:51:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:51:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 18:51:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 20 ms -2016-05-02 18:51:59 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 18:51:59 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:51:59 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 18:51:59 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 18:51:59 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 18:51:59 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 18:51:59 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 18:51:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:51:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:51:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:51:59 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 18:51:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:51:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:51:59 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 18:51:59 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 18:51:59 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 18:51:59 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 18:51:59 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 18:51:59 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 18:51:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 18:51:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:51:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 18:51:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 18:52:00 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 18:52:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:52:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:00 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 18:52:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:00 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 18:52:00 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 18:52:00 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:52:00 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 18:52:00 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 18:52:00 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 18:52:00 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 18:52:00 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 18:52:00 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 18:52:00 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 18:52:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:00 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 18:52:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 18:52:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 18:52:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 18:52:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 18:52:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 18:52:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:01 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 18:52:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 18:52:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:02 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 18:52:02 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 18:52:02 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 18:52:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:52:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:52:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:52:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:02 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 18:52:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:52:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:52:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:52:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:02 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:52:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:52:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:03 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 18:52:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:03 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 18:52:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:03 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 18:52:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 210 msc 0 sec -2016-05-02 18:52:03 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 18:52:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 156 msc 0 sec -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:52:03 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:52:03 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 18:52:03 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 32 ms -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 18:52:03 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:52:03 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 18:52:03 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-05-02 18:52:03 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 18:52:03 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 18:52:03 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 18:52:03 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 18:52:03 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 18:52:03 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:52:03 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 18:52:03 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 18:52:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:52:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 413 msc 0 sec -2016-05-02 18:52:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:52:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:52:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:52:06 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 18:52:06 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:52:06 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 18:52:06 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 18:52:06 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 18:52:06 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 18:52:06 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 18:52:06 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 18:52:06 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 18:52:06 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:52:06 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 18:52:06 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 18:52:06 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 18:52:06 DEBUG WPS2SM:204 - Schema: null -2016-05-02 18:52:06 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 18:52:06 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 18:52:06 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 18:52:06 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 18:52:06 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 18:52:06 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 18:52:06 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 18:52:06 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 18:52:06 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 18:52:06 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 18:52:06 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 18:52:06 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 18:52:06 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 18:52:06 DEBUG WPS2SM:92 - WPS type: -2016-05-02 18:52:06 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 18:52:06 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 18:52:06 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 18:52:06 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 18:52:06 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 18:52:06 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 18:52:06 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 18:52:06 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 18:52:06 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 18:52:06 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 18:52:06 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 18:52:06 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 18:52:06 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 18:52:06 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:52:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:52:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:52:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:52:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:52:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:52:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:52:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:52:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:52:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 18:52:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:52:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:52:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:52:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:52:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 18:52:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 18:52:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 18:52:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 18:52:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:52:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 18:52:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:52:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 18:52:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 223 msc 0 sec -2016-05-02 18:52:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 18:52:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:52:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:52:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:52:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:52:10 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:52:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:52:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:10 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 18:52:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 18:52:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:52:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:52:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:52:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:52:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:52:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 18:52:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 18:52:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 18:52:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:52:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:52:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:52:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:52:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:52:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:52:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 18:52:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 18:52:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:52:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:52:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 18:52:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 18:52:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 18:52:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 18:52:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:52:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 18:52:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:52:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 18:52:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 165 msc 0 sec -2016-05-02 18:52:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 18:52:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:52:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:53:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:53:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:54:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:54:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:55:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:55:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:56:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:56:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:57:41 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 18:57:41 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 18:57:41 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 18:57:41 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 18:57:41 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 18:57:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:57:41 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 18:57:41 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@622107a1 -2016-05-02 18:57:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:57:41 INFO ASLSession:352 - Logging the entrance -2016-05-02 18:57:41 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 18:57:41 DEBUG TemplateModel:83 - 2016-05-02 18:57:41, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 18:57:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:57:41 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 18:57:43 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 18:57:43 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 18:57:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:57:43 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 18:57:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:43 INFO ASLSession:352 - Logging the entrance -2016-05-02 18:57:43 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 18:57:43 DEBUG TemplateModel:83 - 2016-05-02 18:57:43, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 18:57:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:57:43 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 18:57:43 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 131 ms -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 18:57:43 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 18:57:43 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 18:57:43 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:57:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 18:57:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@772d972a -2016-05-02 18:57:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@12da088c -2016-05-02 18:57:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@35cafe58 -2016-05-02 18:57:43 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@69b4422 -2016-05-02 18:57:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-05-02 18:57:43 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 18:57:44 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 18:57:44 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 18:57:44 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 18:57:44 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 18:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:57:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 18:57:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 27 ms -2016-05-02 18:57:44 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 18:57:44 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:57:44 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 18:57:44 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 18:57:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 18:57:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 18:57:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 18:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:57:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:57:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:57:44 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 18:57:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:44 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 18:57:44 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 18:57:44 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 18:57:44 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 18:57:44 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 18:57:44 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 18:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 18:57:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:57:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 18:57:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 18:57:44 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 18:57:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:57:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:44 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 18:57:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:44 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 18:57:44 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 18:57:45 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:57:45 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 18:57:45 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 18:57:45 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 18:57:45 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 18:57:45 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 18:57:45 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:45 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 18:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 18:57:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:45 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 18:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 18:57:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:45 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 18:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 18:57:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:45 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 18:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 18:57:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:46 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 18:57:46 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 18:57:46 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 18:57:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:57:46 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:57:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:57:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:46 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 18:57:46 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:46 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:46 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:57:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:46 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:46 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:46 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:46 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:46 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:46 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:47 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 18:57:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:47 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 18:57:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:57:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:57:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:47 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 18:57:47 INFO WorkspaceExplorerServiceImpl:188 - end time - 151 msc 0 sec -2016-05-02 18:57:47 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 18:57:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:47 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:57:47 INFO WorkspaceExplorerServiceImpl:188 - end time - 128 msc 0 sec -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:47 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:57:47 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 18:57:47 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 51 ms -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:57:47 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:57:47 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 18:57:47 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 19 ms -2016-05-02 18:57:47 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 18:57:47 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 18:57:47 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 18:57:47 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:57:47 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:57:47 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:57:47 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 18:57:47 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:57:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:47 INFO WorkspaceExplorerServiceImpl:188 - end time - 378 msc 0 sec -2016-05-02 18:57:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:57:50 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:57:50 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 18:57:50 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:57:50 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 18:57:51 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 18:57:51 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 18:57:51 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 18:57:51 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 18:57:51 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 18:57:51 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 18:57:51 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:57:51 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 18:57:51 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 18:57:51 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 18:57:51 DEBUG WPS2SM:204 - Schema: null -2016-05-02 18:57:51 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 18:57:51 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 18:57:51 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 18:57:51 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 18:57:51 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 18:57:51 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 18:57:51 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 18:57:51 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 18:57:51 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 18:57:51 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 18:57:51 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 18:57:51 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 18:57:51 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 18:57:51 DEBUG WPS2SM:92 - WPS type: -2016-05-02 18:57:51 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 18:57:51 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 18:57:51 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 18:57:51 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 18:57:51 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 18:57:51 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 18:57:51 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 18:57:51 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 18:57:51 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 18:57:51 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 18:57:51 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 18:57:51 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 18:57:51 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 18:57:51 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:57:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:57:51 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:57:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:57:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 18:57:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 18:57:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:57:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:57:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:57:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:57:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:57:51 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:57:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:57:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:57:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 18:57:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 18:57:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 18:57:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 18:57:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:57:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 18:57:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:57:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 18:57:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 198 msc 0 sec -2016-05-02 18:57:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:57:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:57:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:57:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:57:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:54 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 18:57:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 18:57:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:57:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:57:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:57:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:57:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:54 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:57:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:57:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:57:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:57:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:57:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:57:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:57:54 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:57:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:57:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:57:54 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 18:57:54 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 18:57:54 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 18:57:54 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 18:57:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:57:54 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 18:57:54 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:57:54 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 18:57:54 INFO WorkspaceExplorerServiceImpl:142 - end time - 163 msc 0 sec -2016-05-02 18:57:54 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:58:14 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:58:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:58:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:58:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:58:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:58:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:58:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:58:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:58:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:58:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:58:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:58:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:58:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:58:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:58:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:58:14 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 18:58:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 18:58:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:58:14 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:58:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:58:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:58:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:58:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:58:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:58:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:58:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:58:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:58:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:58:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:58:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:58:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:58:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:58:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:58:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:58:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:58:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:58:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:58:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 18:58:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 18:58:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 18:58:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 18:58:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:58:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 18:58:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:58:14 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 18:58:14 INFO WorkspaceExplorerServiceImpl:142 - end time - 173 msc 0 sec -2016-05-02 18:58:14 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:58:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:58:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:58:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:58:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:58:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:58:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:58:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:58:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:58:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:58:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:58:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:58:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:58:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:58:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:58:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:58:22 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 18:58:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:58:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:58:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:58:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:58:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:58:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:58:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:58:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:58:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:58:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:58:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:58:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:58:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:58:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:58:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:58:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:58:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:58:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:58:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:58:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:58:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:58:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 18:58:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 18:58:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 18:58:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 18:58:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:58:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 18:58:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:58:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 18:58:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-02 18:58:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 18:58:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:58:36 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:59:38 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 18:59:38 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 18:59:39 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 18:59:39 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 18:59:39 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 18:59:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:59:39 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 18:59:39 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@45c859c7 -2016-05-02 18:59:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:39 INFO ASLSession:352 - Logging the entrance -2016-05-02 18:59:39 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 18:59:39 DEBUG TemplateModel:83 - 2016-05-02 18:59:39, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 18:59:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:59:39 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 18:59:41 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 18:59:41 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 18:59:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:59:41 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 18:59:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:59:41 INFO ASLSession:352 - Logging the entrance -2016-05-02 18:59:41 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 18:59:41 DEBUG TemplateModel:83 - 2016-05-02 18:59:41, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 18:59:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:59:41 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 18:59:41 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 109 ms -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 18:59:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 18:59:41 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 18:59:41 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:59:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 18:59:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@30810bb -2016-05-02 18:59:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6b2ee5d8 -2016-05-02 18:59:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@3257a812 -2016-05-02 18:59:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4fe816ab -2016-05-02 18:59:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 94 ms -2016-05-02 18:59:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 18:59:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 18:59:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 18:59:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 18:59:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 18:59:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:59:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:59:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 18:59:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 21 ms -2016-05-02 18:59:41 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 18:59:41 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:59:41 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 18:59:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 18:59:42 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 18:59:42 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 18:59:42 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 18:59:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:59:42 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:59:42 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 18:59:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:42 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 18:59:42 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 18:59:42 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 18:59:42 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 18:59:42 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 18:59:42 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 18:59:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 18:59:42 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:59:42 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 18:59:42 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 32 ms -2016-05-02 18:59:42 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 18:59:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:42 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 18:59:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:42 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 18:59:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:59:42 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 18:59:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 18:59:42 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 18:59:42 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 18:59:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 18:59:42 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 18:59:42 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 18:59:42 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 18:59:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 18:59:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 18:59:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 18:59:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 18:59:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:43 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 18:59:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 18:59:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:43 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 18:59:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 18:59:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 18:59:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 18:59:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 18:59:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:59:44 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:59:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:59:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:44 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 18:59:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:59:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:59:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:59:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:44 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 18:59:44 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 18:59:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 119 msc 0 sec -2016-05-02 18:59:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:59:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:44 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 18:59:44 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 18:59:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:44 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 18:59:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:59:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:59:45 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:59:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 18:59:45 INFO WorkspaceExplorerServiceImpl:188 - end time - 131 msc 0 sec -2016-05-02 18:59:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 30 ms -2016-05-02 18:59:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:59:45 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:59:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 18:59:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 20 ms -2016-05-02 18:59:45 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 18:59:45 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 18:59:45 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 18:59:45 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 18:59:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:59:45 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 18:59:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:59:45 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 18:59:45 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 18:59:45 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 18:59:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:59:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:59:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 18:59:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:59:45 INFO WorkspaceExplorerServiceImpl:188 - end time - 341 msc 0 sec -2016-05-02 18:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:59:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 18:59:48 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 18:59:48 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:59:48 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 18:59:48 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 18:59:48 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 18:59:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 18:59:48 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 18:59:48 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 18:59:48 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 18:59:48 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 18:59:48 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 18:59:48 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 18:59:48 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 18:59:48 DEBUG WPS2SM:204 - Schema: null -2016-05-02 18:59:48 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 18:59:48 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 18:59:48 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 18:59:48 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 18:59:48 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 18:59:48 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 18:59:48 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 18:59:48 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 18:59:48 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 18:59:48 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 18:59:48 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 18:59:48 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 18:59:48 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 18:59:48 DEBUG WPS2SM:92 - WPS type: -2016-05-02 18:59:48 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 18:59:48 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 18:59:48 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 18:59:48 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 18:59:48 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 18:59:48 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 18:59:48 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 18:59:48 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 18:59:48 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 18:59:48 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 18:59:48 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 18:59:48 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 18:59:48 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 18:59:48 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 18:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:59:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 18:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 18:59:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:48 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 18:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 18:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 18:59:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 18:59:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:59:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:59:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:59:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:59:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:59:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:49 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 18:59:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 18:59:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 18:59:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 18:59:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:59:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 18:59:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:59:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 18:59:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 217 msc 0 sec -2016-05-02 18:59:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 18:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:59:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 18:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 18:59:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:50 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 18:59:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 18:59:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 18:59:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 18:59:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:59:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 18:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 18:59:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:59:50 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:59:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:59:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 18:59:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 18:59:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 18:59:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 18:59:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 18:59:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 18:59:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 18:59:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 18:59:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 18:59:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 18:59:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 18:59:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 18:59:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 18:59:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 18:59:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:59:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 18:59:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 18:59:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 18:59:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 172 msc 0 sec -2016-05-02 18:59:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:00:38 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:00:38 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:00:38 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:00:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:00:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:00:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:00:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:00:38 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@36212886 -2016-05-02 19:00:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:00:38 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:00:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:00:38 DEBUG TemplateModel:83 - 2016-05-02 19:00:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:00:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:00:38 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:00:40 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:00:40 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:00:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:00:40 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:00:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:40 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:00:40 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:00:40 DEBUG TemplateModel:83 - 2016-05-02 19:00:40, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:00:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:00:40 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:00:41 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 141 ms -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:00:41 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:00:41 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:00:41 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:00:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:00:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@1dac2111 -2016-05-02 19:00:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@278c846e -2016-05-02 19:00:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@371d09bf -2016-05-02 19:00:41 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@42c28891 -2016-05-02 19:00:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 106 ms -2016-05-02 19:00:41 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:00:41 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:00:41 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:00:41 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:00:41 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:00:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:00:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:00:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 31 ms -2016-05-02 19:00:41 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:00:41 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:00:41 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:00:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:00:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:00:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:00:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:00:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:00:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:00:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:00:41 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:00:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:41 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:00:41 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:00:41 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:00:41 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:00:41 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:00:41 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:00:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:00:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:00:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:00:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 20 ms -2016-05-02 19:00:42 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:00:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:00:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:42 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:00:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:42 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:00:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:00:42 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:00:42 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:00:42 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:00:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:00:42 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:00:42 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:00:42 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:00:42 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:00:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:00:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:00:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:00:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:00:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:00:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:00:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:43 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:00:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:00:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:44 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:00:44 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:00:44 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-02 19:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-02 19:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:44 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:44 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:44 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:00:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 107 msc 0 sec -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:00:44 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:00:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:44 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:00:44 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:00:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:44 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:00:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:00:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 141 msc 0 sec -2016-05-02 19:00:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:00:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:00:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:00:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 26 ms -2016-05-02 19:00:44 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:00:44 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:00:44 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:00:44 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:00:44 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:00:44 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:00:44 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:00:44 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 23 ms -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:00:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:44 INFO WorkspaceExplorerServiceImpl:188 - end time - 352 msc 0 sec -2016-05-02 19:00:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:00:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:00:48 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:00:48 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:00:48 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:00:49 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:00:49 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:00:49 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:00:49 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:00:49 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:00:49 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:00:49 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:00:49 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:00:49 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:00:49 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:00:49 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:00:49 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:00:49 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:00:49 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:00:49 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:00:49 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:00:49 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:00:49 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:00:49 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:00:49 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:00:49 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:00:49 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:00:49 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:00:49 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:00:49 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:00:49 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:00:49 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:00:49 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:00:49 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:00:49 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:00:49 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:00:49 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:00:49 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:00:49 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:00:49 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:00:49 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:00:49 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:00:49 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:00:49 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:00:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:00:49 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-02 19:00:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:49 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:00:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:00:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:00:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:00:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:00:49 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:00:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:00:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:00:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:00:49 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:00:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:49 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:00:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:00:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:00:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:00:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:00:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:00:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:00:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:00:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 191 msc 0 sec -2016-05-02 19:00:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-02 19:00:51 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-02 19:00:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:00:51 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:00:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:51 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:00:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 27 -2016-05-02 19:00:51 DEBUG ASLSession:458 - Getting security token: null in thread 27 -2016-05-02 19:00:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:00:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:00:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:00:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:00:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:00:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:00:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:00:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:00:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:00:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:00:51 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:00:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:51 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:00:51 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:00:51 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:00:51 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:00:51 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:00:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:00:51 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:00:51 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:00:51 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:00:51 INFO WorkspaceExplorerServiceImpl:142 - end time - 171 msc 0 sec -2016-05-02 19:00:51 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:01:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:01:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:09 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:03:09 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:03:09 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:03:09 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:03:09 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:03:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:09 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:03:09 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@35dc9734 -2016-05-02 19:03:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:09 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:03:09 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:03:09 DEBUG TemplateModel:83 - 2016-05-02 19:03:09, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:03:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:03:09 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:03:11 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:03:11 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:03:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:03:11 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:03:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:11 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:03:11 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:03:11 DEBUG TemplateModel:83 - 2016-05-02 19:03:11, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:03:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:03:11 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:03:11 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 116 ms -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:03:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:03:11 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:03:11 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:03:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:03:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@37254e63 -2016-05-02 19:03:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@68ad0c2 -2016-05-02 19:03:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@182aba39 -2016-05-02 19:03:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@51dd97d4 -2016-05-02 19:03:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 111 ms -2016-05-02 19:03:12 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:03:12 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:03:12 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:03:12 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:03:12 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:03:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:03:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:03:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-02 19:03:12 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:03:12 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:03:12 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:03:12 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:03:12 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:03:12 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:03:12 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:03:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:03:12 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:03:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:12 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:03:12 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:03:12 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:03:12 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:03:12 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:03:12 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:03:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:03:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:03:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:03:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 23 ms -2016-05-02 19:03:12 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:03:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:12 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:03:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:12 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:03:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:03:13 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:03:13 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:03:13 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:03:13 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:03:13 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:03:13 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:03:13 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:13 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:03:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:03:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:03:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:03:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:03:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:03:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:03:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:03:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:15 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:03:15 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:03:15 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:15 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:15 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:03:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:15 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:03:15 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:03:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 120 msc 0 sec -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:15 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:03:15 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:03:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:15 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:03:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:03:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 137 msc 0 sec -2016-05-02 19:03:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 31 ms -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:03:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:03:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:03:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 20 ms -2016-05-02 19:03:15 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:03:15 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:03:15 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:03:15 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:03:15 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:03:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:03:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:03:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:03:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 377 msc 0 sec -2016-05-02 19:03:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:03:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:03:19 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:03:19 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:03:19 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:03:19 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:03:19 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:03:19 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:03:19 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:03:19 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:03:19 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:03:19 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:03:19 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:03:19 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:03:19 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:03:19 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:03:19 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:03:19 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:03:19 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:03:19 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:03:19 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:03:19 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:03:19 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:03:19 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:03:19 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:03:19 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:03:19 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:03:19 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:03:19 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:03:19 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:03:19 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:03:19 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:03:19 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:03:19 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:03:19 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:03:19 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:03:19 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:03:19 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:03:19 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:03:19 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:03:19 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:03:19 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:03:19 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:03:19 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 238 msc 0 sec -2016-05-02 19:03:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:21 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:21 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:21 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:03:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:21 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-02 19:03:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:25 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:25 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:25 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:25 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:25 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:25 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:25 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:25 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:25 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:25 INFO WorkspaceExplorerServiceImpl:142 - end time - 170 msc 0 sec -2016-05-02 19:03:25 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:26 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:03:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:26 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:27 INFO WorkspaceExplorerServiceImpl:142 - end time - 206 msc 0 sec -2016-05-02 19:03:27 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:28 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 199 msc 0 sec -2016-05-02 19:03:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:29 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:29 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:03:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:30 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:30 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:30 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:30 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:30 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:30 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:30 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:30 INFO WorkspaceExplorerServiceImpl:142 - end time - 144 msc 0 sec -2016-05-02 19:03:30 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:30 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:30 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:30 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:31 INFO WorkspaceExplorerServiceImpl:142 - end time - 155 msc 0 sec -2016-05-02 19:03:31 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:38 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:38 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:38 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:38 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:38 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:38 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:38 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:38 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:38 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:38 INFO WorkspaceExplorerServiceImpl:142 - end time - 139 msc 0 sec -2016-05-02 19:03:38 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:03:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 364 msc 0 sec -2016-05-02 19:03:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:03:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:03:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:03:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 144 msc 0 sec -2016-05-02 19:03:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:03:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:03:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:03:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:04:00 INFO WorkspaceExplorerServiceImpl:142 - end time - 156 msc 0 sec -2016-05-02 19:04:00 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:00 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:04:00 INFO WorkspaceExplorerServiceImpl:142 - end time - 148 msc 0 sec -2016-05-02 19:04:00 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:00 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:00 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:04:01 INFO WorkspaceExplorerServiceImpl:142 - end time - 128 msc 0 sec -2016-05-02 19:04:01 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:04:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:04:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:01 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:04:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:04:01 INFO WorkspaceExplorerServiceImpl:142 - end time - 141 msc 0 sec -2016-05-02 19:04:01 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:04:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:04:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:01 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:04:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:04:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:04:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:04:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:04:01 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:04:01 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:04:01 INFO WorkspaceExplorerServiceImpl:142 - end time - 134 msc 0 sec -2016-05-02 19:04:01 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:04:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:04:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:04:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:05:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:05:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:06:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:06:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:04 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:08:04 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:08:04 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:08:04 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:08:04 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:08:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:08:04 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:08:04 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@71b38be9 -2016-05-02 19:08:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:04 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:08:04 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:08:04 DEBUG TemplateModel:83 - 2016-05-02 19:08:04, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:08:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:08:04 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:08:06 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:08:06 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:08:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:06 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:08:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:06 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:08:06 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:08:06 DEBUG TemplateModel:83 - 2016-05-02 19:08:06, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:08:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:08:06 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:08:06 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 134 ms -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:08:06 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:08:06 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:08:06 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:08:06 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:08:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@769efe61 -2016-05-02 19:08:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@2a4da6a -2016-05-02 19:08:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1360003f -2016-05-02 19:08:06 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@18d0fddf -2016-05-02 19:08:06 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 103 ms -2016-05-02 19:08:06 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:08:06 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:08:06 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:08:06 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:08:06 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:08:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:06 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:08:06 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:08:06 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 25 ms -2016-05-02 19:08:06 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:08:06 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:08:06 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:08:06 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:08:07 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:08:07 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:08:07 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:08:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:07 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:08:07 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:08:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:07 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:08:07 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:08:07 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:08:07 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:08:07 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:08:07 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:08:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:08:07 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:08:07 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:08:07 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 19:08:07 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:08:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:07 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:08:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:07 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:08:07 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:08:07 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:08:07 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:08:07 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:08:07 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:08:07 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:08:07 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:08:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:07 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:08:07 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:08:07 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:08:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:08:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:08:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:08:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:08:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:08:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:08 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:08:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:08:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:08 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:08:08 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:08:08 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:08:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:08:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:08 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:08:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:09 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:08:09 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:08:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:09 INFO WorkspaceExplorerServiceImpl:188 - end time - 135 msc 0 sec -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:09 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:08:09 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:08:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:09 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:09 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:08:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:08:09 INFO WorkspaceExplorerServiceImpl:188 - end time - 150 msc 0 sec -2016-05-02 19:08:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:08:09 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:08:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:08:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 19:08:09 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:08:09 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:08:09 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:08:09 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:08:09 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:08:09 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:08:09 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:08:09 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:08:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:09 INFO WorkspaceExplorerServiceImpl:188 - end time - 368 msc 0 sec -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:08:14 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:08:14 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:08:14 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:08:14 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:08:14 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:08:14 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:08:14 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:08:14 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:08:14 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:08:14 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:08:14 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:08:14 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:08:14 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:08:14 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:08:14 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:08:14 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:08:14 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:08:14 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:08:14 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:08:14 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:08:14 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:08:14 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:08:14 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:08:14 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:08:14 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:08:14 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:08:14 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:08:14 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:08:14 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:08:14 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:08:14 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:08:14 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:08:14 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:08:14 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:08:14 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:08:14 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:08:14 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:08:14 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:08:14 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:08:14 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:08:14 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:08:14 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:14 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:15 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:15 INFO WorkspaceExplorerServiceImpl:142 - end time - 202 msc 0 sec -2016-05-02 19:08:15 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 177 msc 0 sec -2016-05-02 19:08:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 185 msc 0 sec -2016-05-02 19:08:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:21 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:21 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:21 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:21 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:21 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:21 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:21 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:21 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-02 19:08:21 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:35 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 166 msc 0 sec -2016-05-02 19:08:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:36 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:36 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:36 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:36 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:36 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:36 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:36 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:36 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:36 INFO WorkspaceExplorerServiceImpl:142 - end time - 153 msc 0 sec -2016-05-02 19:08:36 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:37 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:37 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:37 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:37 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:37 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:37 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:37 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:37 INFO WorkspaceExplorerServiceImpl:142 - end time - 168 msc 0 sec -2016-05-02 19:08:37 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:37 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:38 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:38 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:38 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:38 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:38 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:38 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:38 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:38 INFO WorkspaceExplorerServiceImpl:142 - end time - 244 msc 0 sec -2016-05-02 19:08:38 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 143 msc 0 sec -2016-05-02 19:08:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:40 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:40 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:40 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:40 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:40 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:40 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:40 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:40 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:40 INFO WorkspaceExplorerServiceImpl:142 - end time - 168 msc 0 sec -2016-05-02 19:08:40 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:42 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:42 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:42 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:08:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:42 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:42 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:42 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:42 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:42 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:42 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:42 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:42 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-02 19:08:42 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:43 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:08:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:43 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:08:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:08:43 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:08:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:08:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:08:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:08:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:08:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:08:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:08:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:08:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:08:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:08:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:08:43 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:08:43 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:08:43 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:08:43 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:08:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:43 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:08:43 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:08:43 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:08:43 INFO WorkspaceExplorerServiceImpl:142 - end time - 150 msc 0 sec -2016-05-02 19:08:43 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:08:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:08:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:09:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:09:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:09:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:09:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:09:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:09:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:09:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:09:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:09:13 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:09:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:09:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:09:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:09:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:09:13 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:09:13 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:09:13 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:09:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:13 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:09:13 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:13 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:09:13 INFO WorkspaceExplorerServiceImpl:142 - end time - 168 msc 0 sec -2016-05-02 19:09:13 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:09:34 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:09:34 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:09:34 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:09:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:34 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:09:34 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:34 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:09:34 INFO WorkspaceExplorerServiceImpl:142 - end time - 147 msc 0 sec -2016-05-02 19:09:34 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:09:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:09:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 141 msc 0 sec -2016-05-02 19:09:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:09:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:35 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:09:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:09:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:09:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:09:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:09:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:09:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 156 msc 0 sec -2016-05-02 19:09:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:09:36 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:09:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:36 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:09:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:09:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:09:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:09:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:09:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:09:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:09:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:09:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:09:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:09:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:36 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:09:36 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:09:36 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:09:36 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:09:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:36 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:09:36 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:09:36 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:09:36 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-02 19:09:36 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:09:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:09:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:09:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:09:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:09:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:10:19 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:10:19 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:10:19 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:10:19 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:10:19 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:10:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:10:19 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:10:19 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4214f24e -2016-05-02 19:10:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:10:19 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:10:19 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:10:19 DEBUG TemplateModel:83 - 2016-05-02 19:10:19, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:10:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:10:19 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:10:21 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:10:21 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:10:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:10:21 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:10:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:10:21 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:10:21 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:10:21 DEBUG TemplateModel:83 - 2016-05-02 19:10:21, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:10:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:10:21 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:10:21 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 123 ms -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:10:21 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:10:21 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:10:22 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:10:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:10:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@3385c8c0 -2016-05-02 19:10:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@5de49d4b -2016-05-02 19:10:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@78ded0bb -2016-05-02 19:10:22 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@5056003e -2016-05-02 19:10:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 133 ms -2016-05-02 19:10:22 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:10:22 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:10:22 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:10:22 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:10:22 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:10:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:10:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:10:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:10:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 18 ms -2016-05-02 19:10:22 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:10:22 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:10:22 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:10:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:10:22 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:10:22 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:10:22 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:10:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:10:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:10:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:10:22 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:10:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:10:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:10:22 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:10:22 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:10:22 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:10:22 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:10:22 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:10:22 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:10:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:10:22 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:10:22 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:10:22 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 19:10:22 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:10:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:10:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:10:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:10:22 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:10:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:10:22 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:10:23 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:10:23 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:10:23 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:10:23 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:10:23 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:10:23 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:10:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:10:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:10:23 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:10:23 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:10:23 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:10:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:10:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:10:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:10:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:10:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:10:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:10:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:10:23 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:10:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:10:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:10:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:10:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:10:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:10:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:10:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:10:23 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:10:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:10:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:10:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:10:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:10:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:10:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:10:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:10:23 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:10:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:10:23 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:10:23 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:10:25 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:10:25 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:10:25 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:10:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:10:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:10:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:10:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:10:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:10:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:10:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:10:25 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:10:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:10:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:10:25 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:10:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:10:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:10:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:10:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:10:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:10:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:10:25 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:10:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:10:25 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:10:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:10:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:10:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:10:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:10:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:10:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:10:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:10:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:10:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 113 msc 0 sec -2016-05-02 19:10:25 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:10:25 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:10:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:10:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:10:25 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:10:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 129 msc 0 sec -2016-05-02 19:10:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:10:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:10:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:10:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:10:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:10:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 19:10:25 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:10:25 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:10:25 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:10:25 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:10:25 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:10:25 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:10:25 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:10:25 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 20 ms -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:10:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:10:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 364 msc 0 sec -2016-05-02 19:10:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:10:28 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:10:28 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:10:28 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:10:28 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:10:28 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:10:28 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:10:28 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:10:28 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:10:28 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:10:28 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:10:28 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:10:28 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:10:28 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:10:28 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:10:28 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:10:28 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:10:28 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:10:28 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:10:28 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:10:28 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:10:28 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:10:28 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:10:28 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:10:28 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:10:28 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:10:28 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:10:28 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:10:28 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:10:28 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:10:28 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:10:28 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:10:28 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:10:28 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:10:28 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:10:28 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:10:28 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:10:28 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:10:28 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:10:28 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:10:28 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:10:28 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:10:28 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:10:28 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:10:28 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:11:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:11:14 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:12:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:12:09 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:12:32 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:12:32 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:12:32 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:12:32 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:12:32 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:12:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:12:32 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:12:32 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@321cf96b -2016-05-02 19:12:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:12:32 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:12:32 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:12:32 DEBUG TemplateModel:83 - 2016-05-02 19:12:32, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:12:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:12:32 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:12:34 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:12:34 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:12:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:12:34 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:12:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:12:34 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:12:34 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:12:34 DEBUG TemplateModel:83 - 2016-05-02 19:12:34, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:12:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:12:34 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:12:34 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 129 ms -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:12:34 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:12:34 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:12:34 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:12:34 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:12:34 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@6a785809 -2016-05-02 19:12:34 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3dbedab1 -2016-05-02 19:12:34 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@27ed1929 -2016-05-02 19:12:34 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@94acbd9 -2016-05-02 19:12:34 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 114 ms -2016-05-02 19:12:34 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:12:34 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:12:34 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:12:34 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:12:34 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:12:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:12:34 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:12:34 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:12:34 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 27 ms -2016-05-02 19:12:34 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:12:34 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:12:34 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:12:34 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:12:35 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:12:35 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:12:35 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:12:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:12:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:12:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:12:35 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:12:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:12:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:12:35 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:12:35 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:12:35 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:12:35 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:12:35 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:12:35 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:12:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:12:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:12:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:12:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 19:12:35 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:12:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:12:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:12:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:12:35 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:12:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:12:35 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:12:35 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:12:35 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:12:35 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:12:35 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:12:35 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:12:35 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:12:35 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:12:35 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:12:35 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:12:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:12:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:12:35 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:12:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:12:35 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:12:35 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:12:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:12:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:12:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:12:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:12:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:12:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:12:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:12:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:12:36 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:12:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:12:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:12:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:12:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:12:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:12:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:12:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:12:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:12:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:12:36 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:12:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:12:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:12:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:12:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:12:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:12:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:12:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:12:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:12:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:12:36 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:12:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:12:36 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:12:36 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:12:37 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:12:37 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:12:37 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:12:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:12:37 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:12:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:12:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:12:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:12:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:12:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:12:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:12:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:12:37 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:12:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:12:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:12:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:12:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:12:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:12:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:12:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:12:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:12:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:12:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:12:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:12:37 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:12:37 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:12:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:12:37 INFO WorkspaceExplorerServiceImpl:188 - end time - 115 msc 0 sec -2016-05-02 19:12:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:12:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:12:37 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:12:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:12:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:12:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:12:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:12:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:12:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:12:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:12:37 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:12:37 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:12:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:12:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:12:37 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:12:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:12:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:12:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:12:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:12:38 INFO WorkspaceExplorerServiceImpl:188 - end time - 145 msc 0 sec -2016-05-02 19:12:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-02 19:12:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:12:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:12:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:12:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 19:12:38 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:12:38 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:12:38 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:12:38 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:12:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:12:38 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:12:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:12:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:12:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:12:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 19:12:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:12:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:12:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:12:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:12:38 INFO WorkspaceExplorerServiceImpl:188 - end time - 345 msc 0 sec -2016-05-02 19:12:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:12:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:12:41 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:12:41 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:12:41 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:12:41 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:12:41 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:12:41 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:12:41 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:12:41 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:12:41 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:12:41 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:12:41 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:12:41 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:12:41 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:12:41 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:12:41 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:12:41 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:12:41 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:12:41 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:12:41 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:12:41 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:12:41 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:12:41 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:12:41 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:12:41 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:12:41 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:12:41 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:12:41 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:12:41 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:12:41 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:12:41 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:12:41 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:12:41 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:12:41 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:12:41 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:12:41 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:12:41 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:12:41 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:12:41 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:12:41 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:12:41 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:12:41 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:12:41 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:12:41 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:13:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:13:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:14:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:14:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:15:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:15:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:17:09 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:17:09 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:17:09 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:17:09 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:17:09 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:17:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:17:09 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:17:09 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3c3ac44b -2016-05-02 19:17:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:17:09 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:17:09 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:17:09 DEBUG TemplateModel:83 - 2016-05-02 19:17:09, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:17:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:17:09 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:17:11 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:17:11 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:17:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:17:11 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:17:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:17:11 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:17:11 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:17:11 DEBUG TemplateModel:83 - 2016-05-02 19:17:11, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:17:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:17:11 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:17:11 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 128 ms -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:17:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:17:12 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:17:12 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:17:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:17:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@3ff418d2 -2016-05-02 19:17:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@98793fc -2016-05-02 19:17:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1fad12f0 -2016-05-02 19:17:12 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@3ab6977f -2016-05-02 19:17:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 101 ms -2016-05-02 19:17:12 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:17:12 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:17:12 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:17:12 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:17:12 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:17:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:17:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:17:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:17:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 23 ms -2016-05-02 19:17:12 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:17:12 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:17:12 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:17:12 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:17:12 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:17:12 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:17:12 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:17:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:17:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:17:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:17:12 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:17:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:17:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:17:12 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:17:12 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:17:12 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:17:12 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:17:12 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:17:12 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:17:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:17:12 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:17:12 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:17:12 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 19:17:12 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:17:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:17:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:17:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:17:12 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:17:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:17:12 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:17:13 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:17:13 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:17:13 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:17:13 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:17:13 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:17:13 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:17:13 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:17:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:17:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:17:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:17:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:17:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:17:13 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:17:13 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:17:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:17:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:17:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:17:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:17:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:17:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:17:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:17:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:17:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:17:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:17:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:17:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:17:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:17:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:17:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:17:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:17:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:17:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:17:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:17:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:17:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:17:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:17:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:17:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:17:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:17:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:17:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:17:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:17:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:17:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:17:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:17:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:17:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:17:15 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:17:15 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:17:15 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:17:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:17:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:17:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:17:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:17:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:17:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:17:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:17:15 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:17:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:17:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:17:15 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:17:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:17:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:17:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:17:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:17:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:17:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:17:15 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:17:15 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:17:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:17:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:17:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 109 msc 0 sec -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:17:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:17:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:17:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:17:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:17:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:17:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:17:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:17:15 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:17:15 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:17:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:17:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:17:15 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:17:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:17:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:17:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 138 msc 0 sec -2016-05-02 19:17:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 19:17:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:17:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:17:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 19:17:15 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:17:15 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:17:15 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:17:15 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 19:17:15 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 19:17:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:17:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:17:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 43 ms -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-02 19:17:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:17:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 363 msc 0 sec -2016-05-02 19:17:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:17:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:17:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:17:18 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:17:18 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:17:18 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:17:18 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:17:18 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:17:18 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:17:18 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:17:18 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:17:18 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:17:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:17:18 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:17:18 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:17:18 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:17:18 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:17:18 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:17:18 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:17:18 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:17:18 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:17:18 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:17:18 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:17:18 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:17:18 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:17:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:17:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:17:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:17:18 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:17:18 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:17:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:17:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:17:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:17:18 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:17:18 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:17:18 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:17:18 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:17:18 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:17:18 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:17:18 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:17:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:17:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:17:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:17:18 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:17:18 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:18:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:18:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:19:27 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:19:27 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:19:27 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:19:27 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:19:27 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:19:27 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:19:27 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:19:27 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6182249e -2016-05-02 19:19:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:19:27 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:19:27 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:19:27 DEBUG TemplateModel:83 - 2016-05-02 19:19:27, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:19:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:19:27 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:19:29 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:19:29 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:19:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:19:29 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:19:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:19:29 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:19:29 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:19:29 DEBUG TemplateModel:83 - 2016-05-02 19:19:29, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:19:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:19:29 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:19:29 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 109 ms -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:19:29 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:19:29 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:19:29 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:19:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:19:29 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@314cde60 -2016-05-02 19:19:29 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@78d52a1c -2016-05-02 19:19:29 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1ba71cc0 -2016-05-02 19:19:29 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@54968d7f -2016-05-02 19:19:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 130 ms -2016-05-02 19:19:29 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:19:29 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:19:29 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:19:29 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:19:29 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:19:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:19:29 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:19:29 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:19:29 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 28 ms -2016-05-02 19:19:29 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:19:29 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:19:29 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:19:29 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:19:30 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:19:30 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:19:30 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:19:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:19:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:19:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:19:30 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:19:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:30 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:19:30 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:19:30 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:19:30 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:19:30 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:19:30 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:19:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:19:30 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:19:30 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:19:30 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 19:19:30 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:19:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:19:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:30 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:19:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:30 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:19:30 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:19:30 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:19:30 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:19:30 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:19:30 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:19:30 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:19:30 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:19:30 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:19:30 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:19:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:30 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:19:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:19:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:31 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:19:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:19:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:31 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:19:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:19:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:31 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:19:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:19:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:31 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:19:31 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:19:31 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:19:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:19:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:19:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:19:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:31 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:19:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:19:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:31 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:19:31 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:19:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:31 INFO WorkspaceExplorerServiceImpl:188 - end time - 113 msc 0 sec -2016-05-02 19:19:32 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:19:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:19:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:32 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:19:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:32 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:19:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:19:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:19:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 29 ms -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:19:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:19:32 INFO WorkspaceExplorerServiceImpl:188 - end time - 164 msc 0 sec -2016-05-02 19:19:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:19:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 19:19:32 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:19:32 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:19:32 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:19:32 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:19:32 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:19:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:19:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:19:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:19:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:32 INFO WorkspaceExplorerServiceImpl:188 - end time - 357 msc 0 sec -2016-05-02 19:19:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:19:49 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:19:49 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:19:49 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:19:49 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:19:50 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:19:50 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:19:50 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:19:50 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:19:50 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:19:50 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:19:50 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:19:50 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:19:50 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:19:50 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:19:50 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:19:50 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:19:50 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:19:50 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:19:50 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:19:50 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:19:50 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:19:50 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:19:50 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:19:50 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:19:50 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:19:50 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:19:50 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:19:50 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:19:50 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:19:50 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:19:50 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:19:50 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:19:50 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:19:50 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:19:50 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:19:50 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:19:50 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:19:50 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:19:50 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:19:50 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:19:50 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:19:50 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:19:50 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:19:50 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:19:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:19:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:19:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:50 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:19:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:19:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:19:50 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:19:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:19:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:19:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:19:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:19:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:19:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:50 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:19:50 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:19:50 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:19:50 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:19:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:19:50 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:19:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:19:50 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:19:50 INFO WorkspaceExplorerServiceImpl:142 - end time - 192 msc 0 sec -2016-05-02 19:19:50 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:19:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:19:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:53 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:19:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:19:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:19:53 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:19:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:19:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:19:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:19:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:19:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:53 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:53 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:53 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:19:53 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:19:53 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:19:53 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:19:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:19:53 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:19:53 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:19:53 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:19:53 INFO WorkspaceExplorerServiceImpl:142 - end time - 160 msc 0 sec -2016-05-02 19:19:53 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:19:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:19:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:55 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:19:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:19:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:19:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:19:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:19:55 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:55 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:19:56 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-02 19:19:56 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:19:56 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:19:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:19:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:19:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:56 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:19:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:19:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:19:56 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:19:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:19:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:19:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:19:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:19:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:19:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:19:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:19:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:19:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:19:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:19:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:19:56 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:19:56 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:19:56 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-02 19:19:56 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:20:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:20:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:21:34 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:21:34 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:21:34 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:21:35 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:21:35 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:21:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:21:35 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:21:35 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4ad67e48 -2016-05-02 19:21:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:21:35 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:21:35 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:21:35 DEBUG TemplateModel:83 - 2016-05-02 19:21:35, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:21:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:21:35 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:21:36 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:21:36 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:21:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:21:36 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:21:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:36 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:21:36 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:21:36 DEBUG TemplateModel:83 - 2016-05-02 19:21:36, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:21:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:21:36 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:21:36 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 114 ms -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:21:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:21:37 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:21:37 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:21:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:21:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@33631465 -2016-05-02 19:21:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@504d34ac -2016-05-02 19:21:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@594a3452 -2016-05-02 19:21:37 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@756efc2e -2016-05-02 19:21:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 109 ms -2016-05-02 19:21:37 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:21:37 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:21:37 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:21:37 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:21:37 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:21:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:37 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:21:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:21:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-02 19:21:37 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:21:37 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:21:37 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:21:37 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:21:37 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:21:37 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:21:37 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:21:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:21:37 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:21:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:21:37 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:21:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:37 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:21:37 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:21:37 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:21:37 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:21:37 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:21:37 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:21:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:21:37 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:21:37 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:21:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 19:21:37 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:21:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:21:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:37 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:21:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:37 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:21:38 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:21:38 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:21:38 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:21:38 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:21:38 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:21:38 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:21:38 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:21:38 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:38 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:21:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:21:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:21:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:21:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:21:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:21:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:21:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:21:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:39 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:21:39 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:21:39 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:21:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:21:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:39 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:21:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:39 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:21:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:39 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:21:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:39 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:21:39 INFO WorkspaceExplorerServiceImpl:188 - end time - 124 msc 0 sec -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:21:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:21:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:21:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:21:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:21:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 19:21:39 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:21:39 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:21:39 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:21:39 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:21:39 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:21:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:21:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:21:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:21:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-02 19:21:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 395 msc 0 sec -2016-05-02 19:21:40 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:21:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:40 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:21:40 INFO WorkspaceExplorerServiceImpl:188 - end time - 65 msc 0 sec -2016-05-02 19:21:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:21:44 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:21:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:21:44 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:21:44 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:21:44 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:21:45 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:21:45 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:21:45 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:21:45 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:21:45 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:21:45 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:21:45 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:21:45 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:21:45 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:21:45 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:21:45 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:21:45 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:21:45 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:21:45 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:21:45 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:21:45 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:21:45 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:21:45 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:21:45 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:21:45 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:21:45 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:21:45 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:21:45 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:21:45 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:21:45 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:21:45 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:21:45 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:21:45 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:21:45 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:21:45 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:21:45 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:21:45 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:21:45 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:21:45 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:21:45 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:21:45 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:21:45 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:21:45 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:21:45 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:45 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:45 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:45 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:21:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:45 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:21:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:21:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:21:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:21:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:21:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:21:45 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:45 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:45 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:45 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:45 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:45 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:21:45 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:21:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:45 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:45 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:45 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:21:45 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:21:45 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:21:45 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:21:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:21:45 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:21:45 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:21:45 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:21:45 INFO WorkspaceExplorerServiceImpl:142 - end time - 200 msc 0 sec -2016-05-02 19:21:45 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:21:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:21:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:21:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:21:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:47 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:21:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:21:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:21:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:21:47 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:21:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:21:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:21:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:21:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:21:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:21:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:21:47 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:21:47 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:21:47 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:21:47 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:21:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:21:47 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:21:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:21:47 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:21:47 INFO WorkspaceExplorerServiceImpl:142 - end time - 202 msc 0 sec -2016-05-02 19:21:47 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:21:56 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:21:56 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:21:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:21:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:56 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:21:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:21:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:21:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:21:56 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:21:56 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:21:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:21:56 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:21:56 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 19:21:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 19:21:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:21:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:21:56 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:21:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:21:56 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:21:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:21:56 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:21:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:21:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:21:56 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:21:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:21:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:21:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:21:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:21:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:21:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:21:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:21:56 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:246067}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1618842, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:21:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:21:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:21:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:21:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:21:56 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1856678}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2269779, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:21:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2128608}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:21:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1002256, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:21:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:21:56 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1542392}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1538586, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:21:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:21:56 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1856679}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856679}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG command:56 - Command execution completed -2016-05-02 19:21:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856679}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG command:56 - Command execution completed -2016-05-02 19:21:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856679}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG command:56 - Command execution completed -2016-05-02 19:21:56 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:21:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856679}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG command:56 - Command execution completed -2016-05-02 19:21:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856679}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:56 DEBUG command:56 - Command execution completed -2016-05-02 19:21:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1856679}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:21:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:21:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:21:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:21:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:21:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:21:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:21:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:21:57 DEBUG query:56 - Query completed -2016-05-02 19:21:57 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 19:21:57 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2128608} -2016-05-02 19:21:57 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:246067} -2016-05-02 19:21:57 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1542392} -2016-05-02 19:21:57 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1856679}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:21:57 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1856679} -2016-05-02 19:21:57 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1856678} -2016-05-02 19:21:57 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:21:57 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:21:57 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:21:57 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 19:21:57 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:21:57 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:21:57 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:21:57 INFO WorkspaceExplorerServiceImpl:188 - end time - 49 msc 0 sec -2016-05-02 19:21:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:21:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:21:58 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:21:58 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:21:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:21:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:58 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:21:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:21:58 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:21:58 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:21:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:21:58 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:21:58 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 19:21:58 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:21:58 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:21:58 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:21:58 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:21:58 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:21:58 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:21:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:21:58 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:21:58 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:21:58 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:21:58 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:21:58 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:21:58 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:21:58 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:21:58 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:21:58 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:21:58 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:21:58 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:21:58 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1856680}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1411365, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:21:58 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:21:58 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:21:58 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:21:58 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:21:58 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2128609}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=956900, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:21:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:21:58 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:246068}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1639754, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:21:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:21:58 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1542393}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:21:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:21:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:21:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:21:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:21:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1988012, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:21:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:21:58 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1856681}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856681}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG command:56 - Command execution completed -2016-05-02 19:21:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856681}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG command:56 - Command execution completed -2016-05-02 19:21:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856681}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 DEBUG command:56 - Command execution completed -2016-05-02 19:21:58 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:21:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856681}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:21:58 DEBUG command:56 - Command execution completed -2016-05-02 19:21:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856681}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:21:58 DEBUG command:56 - Command execution completed -2016-05-02 19:21:58 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1856681}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:21:58 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:21:58 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:21:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 45 msc 0 sec -2016-05-02 19:21:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:21:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:21:58 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:21:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:21:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:21:59 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:21:59 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:21:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:21:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:59 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:21:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:59 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:21:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:21:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:21:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:21:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:21:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:21:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:21:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:21:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:21:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:21:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:21:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:21:59 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:22:00 DEBUG query:56 - Query completed -2016-05-02 19:22:00 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 19:22:00 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2128609} -2016-05-02 19:22:00 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:246068} -2016-05-02 19:22:00 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1856681}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:22:00 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1856681} -2016-05-02 19:22:00 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1542393} -2016-05-02 19:22:00 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1856680} -2016-05-02 19:22:00 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:22:00 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:22:00 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:22:00 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 19:22:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:00 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:22:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:22:00 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:22:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:22:00 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:22:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:00 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:00 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:22:00 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:22:00 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:22:00 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:22:00 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:22:00 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:22:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:00 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:00 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:22:00 DEBUG Operation:173 - get(String) - start -2016-05-02 19:22:00 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:22:00 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:22:00 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:22:00 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:22:00 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:00 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:00 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:00 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:22:00 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:22:00 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:22:00 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1856682}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:246069}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1393876, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:22:00 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:00 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1695904, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:00 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:00 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2128610}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1004347, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:00 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1542396}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1267460, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:22:00 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1856683}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG command:56 - Command execution completed -2016-05-02 19:22:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG command:56 - Command execution completed -2016-05-02 19:22:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG command:56 - Command execution completed -2016-05-02 19:22:00 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:22:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG command:56 - Command execution completed -2016-05-02 19:22:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG command:56 - Command execution completed -2016-05-02 19:22:00 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:22:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG command:56 - Command execution completed -2016-05-02 19:22:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG command:56 - Command execution completed -2016-05-02 19:22:00 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:22:00 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG query:56 - Query completed -2016-05-02 19:22:00 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:22:00 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:22:00 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:22:00 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG update:56 - Update completed -2016-05-02 19:22:00 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1856683}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:00 DEBUG query:56 - Query completed -2016-05-02 19:22:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:01 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:22:01 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:22:01 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:22:01 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:22:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:01 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:01 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:22:01 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:22:01 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:22:01 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:22:01 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:22:01 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:22:01 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:22:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:01 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:01 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:22:01 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:22:01 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:22:01 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:22:01 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:01 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:01 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:01 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:22:01 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:22:01 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:22:01 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:246070}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1192822, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:01 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:22:01 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:01 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1856684}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1518577, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:01 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:01 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:01 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2128611}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=903919, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:01 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1542397}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1484916, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:22:01 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1856685}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856685}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG command:56 - Command execution completed -2016-05-02 19:22:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856685}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG command:56 - Command execution completed -2016-05-02 19:22:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856685}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG command:56 - Command execution completed -2016-05-02 19:22:01 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:22:01 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:22:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856685}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG command:56 - Command execution completed -2016-05-02 19:22:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856685}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG command:56 - Command execution completed -2016-05-02 19:22:01 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:22:01 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1856685}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:01 DEBUG query:56 - Query completed -2016-05-02 19:22:01 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2128611} -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:246070} -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1542397} -2016-05-02 19:22:01 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1856685}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1856685} -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1856684} -2016-05-02 19:22:01 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:22:01 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:22:01 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:22:01 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:22:01 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:22:01 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:22:01 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:22:01 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:22:01 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:22:01 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1856683}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1856683} -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2128610} -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:246069} -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1542396} -2016-05-02 19:22:01 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1856682} -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:22:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:22:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:22:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:22:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:12 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:22:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:22:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:22:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:22:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:22:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:22:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:22:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:22:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:22:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:22:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 169 msc 0 sec -2016-05-02 19:22:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:22:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:22:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:15 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:22:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:22:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:22:15 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:22:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:22:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:15 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:15 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:15 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:22:15 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:22:15 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:22:15 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:22:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:22:15 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:22:15 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:22:15 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:22:15 INFO WorkspaceExplorerServiceImpl:142 - end time - 151 msc 0 sec -2016-05-02 19:22:15 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:22:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:22:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:16 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:22:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:22:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:22:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:16 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:22:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:22:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:22:16 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:22:16 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:22:16 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:22:16 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:22:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:22:16 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:22:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:22:16 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:22:16 INFO WorkspaceExplorerServiceImpl:142 - end time - 159 msc 0 sec -2016-05-02 19:22:16 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:22:23 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:22:23 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:22:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:22:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:23 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:22:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:23 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:22:23 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:22:23 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:22:23 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:22:23 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:23 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:23 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 19:22:23 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 19:22:23 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:22:23 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:22:23 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:22:23 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:22:23 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:22:23 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:23 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:23 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:22:23 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:22:23 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:22:23 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:22:23 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:23 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:23 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:23 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:22:23 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:22:23 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:22:24 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:246076}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1236280, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:24 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:22:24 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:24 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:24 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1856691}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2128617}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1100188, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1575305, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:24 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:24 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1542401}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1394104, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:22:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:24 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:22:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:24 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1856692}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856692}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:22:24 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:22:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:22:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:24 DEBUG command:56 - Command execution completed -2016-05-02 19:22:24 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:22:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856692}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG command:56 - Command execution completed -2016-05-02 19:22:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856692}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG command:56 - Command execution completed -2016-05-02 19:22:24 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:22:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856692}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG command:56 - Command execution completed -2016-05-02 19:22:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856692}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG command:56 - Command execution completed -2016-05-02 19:22:24 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1856692}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:22:24 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:22:24 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:22:24 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:22:24 INFO WorkspaceExplorerServiceImpl:188 - end time - 40 msc 0 sec -2016-05-02 19:22:24 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:22:24 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:22:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:22:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:22:24 DEBUG query:56 - Query completed -2016-05-02 19:22:24 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 19:22:24 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2128617} -2016-05-02 19:22:24 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1856692}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:22:24 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1542401} -2016-05-02 19:22:24 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:246076} -2016-05-02 19:22:24 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1856692} -2016-05-02 19:22:24 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1856691} -2016-05-02 19:22:24 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:22:24 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:22:24 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:22:24 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 19:22:25 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:22:25 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:22:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:22:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:22:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:25 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:22:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:22:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:22:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:22:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:25 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:22:25 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:22:25 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:22:25 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:22:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:25 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:25 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 19:22:25 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:22:25 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:22:25 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:22:25 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:22:25 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:22:25 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:22:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:25 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:25 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:22:25 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:22:25 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:22:25 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:22:25 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:25 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:25 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:25 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:22:25 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:22:25 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:22:25 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1856693}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1130480, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:25 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:22:25 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:25 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:25 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:25 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:246077}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1205604, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:25 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2128618}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1013766, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:25 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1542402}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1547822, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:22:25 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1856694}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856694}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG command:56 - Command execution completed -2016-05-02 19:22:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856694}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG command:56 - Command execution completed -2016-05-02 19:22:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856694}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:22:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:25 DEBUG command:56 - Command execution completed -2016-05-02 19:22:25 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:22:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856694}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:25 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:22:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:25 DEBUG command:56 - Command execution completed -2016-05-02 19:22:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856694}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 DEBUG command:56 - Command execution completed -2016-05-02 19:22:25 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1856694}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:25 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:22:25 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:22:25 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:22:25 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:22:25 INFO WorkspaceExplorerServiceImpl:188 - end time - 46 msc 0 sec -2016-05-02 19:22:25 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:22:25 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:22:25 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:22:25 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:22:25 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:22:26 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:22:26 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:22:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:22:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:22:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:22:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:26 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:22:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:22:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:22:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:22:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:26 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:22:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:26 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:22:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:22:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:26 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:22:26 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:22:26 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:22:26 DEBUG query:56 - Query completed -2016-05-02 19:22:26 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 19:22:26 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:246077} -2016-05-02 19:22:26 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1856694}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:22:26 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2128618} -2016-05-02 19:22:26 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1542402} -2016-05-02 19:22:26 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1856694} -2016-05-02 19:22:26 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:22:26 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:22:26 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1856693} -2016-05-02 19:22:26 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:22:26 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 19:22:26 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:22:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:22:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:22:27 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:22:27 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-02 19:22:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:27 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:22:27 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:22:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:27 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:27 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 19:22:27 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:22:27 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:22:27 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:22:27 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:22:27 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:22:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:27 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:27 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:22:27 DEBUG Operation:173 - get(String) - start -2016-05-02 19:22:27 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:22:27 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:22:27 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:22:27 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:22:27 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:27 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:27 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:22:27 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:22:27 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1856695}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1448284, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:27 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:22:27 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:27 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:27 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2128619}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:246078}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1318683, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1163119, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1542403}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1426572, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1856696}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:22:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:22:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:22:27 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG query:56 - Query completed -2016-05-02 19:22:27 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 19:22:27 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:22:27 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:22:27 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG update:56 - Update completed -2016-05-02 19:22:27 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1856696}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG query:56 - Query completed -2016-05-02 19:22:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:22:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:22:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:22:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:22:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:22:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:22:27 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:22:27 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-02 19:22:27 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:22:27 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:22:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:27 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:27 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 19:22:27 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:22:27 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:22:27 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:22:27 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:22:27 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:22:27 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:22:27 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:22:27 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:22:27 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:22:27 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:22:27 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:22:27 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:22:27 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:27 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:27 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:22:27 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:22:27 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1856697}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1284066, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:27 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:22:27 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:27 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:22:27 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2128620}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:246079}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=771869, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1161838, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1856698}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1542404}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856698}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1133870, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:22:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856698}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856698}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:22:27 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:22:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856698}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856698}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG command:56 - Command execution completed -2016-05-02 19:22:27 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:22:27 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1856698}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:27 DEBUG query:56 - Query completed -2016-05-02 19:22:27 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 19:22:27 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2128620} -2016-05-02 19:22:27 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1856698}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:22:27 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1856698} -2016-05-02 19:22:27 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1542404} -2016-05-02 19:22:27 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1856697} -2016-05-02 19:22:27 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:246079} -2016-05-02 19:22:27 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:22:27 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:22:27 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:22:27 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:22:27 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:22:27 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:22:27 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:22:27 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 19:22:27 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 19:22:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:22:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:22:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:22:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:22:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:22:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:22:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:22:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:22:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:22:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:22:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:22:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:22:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:22:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:22:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:22:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:22:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:22:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:23:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:23:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:23:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:23:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:23:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:23:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:23:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:23:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:23:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:23:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:23:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:23:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:23:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:23:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:23:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:23:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:23:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:23:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:23:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:23:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:23:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:23:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:23:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:23:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:23:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:23:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:23:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:23:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:23:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:23:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:23:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:23:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:23:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:23:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:23:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:24:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:24:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:24:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:24:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:24:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:24:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:24:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:24:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:24:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:24:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:24:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:24:36 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:24:36 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:24:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:24:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:24:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:24:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:24:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:24:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:24:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:24:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:24:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:24:36 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:24:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:24:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:24:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:24:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:24:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:24:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:24:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:24:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:24:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:24:36 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:24:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:24:36 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:24:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:24:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:24:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:24:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:24:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:24:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:24:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:24:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:24:36 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1856696}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:24:36 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1856696} -2016-05-02 19:24:36 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:246078} -2016-05-02 19:24:36 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1542403} -2016-05-02 19:24:36 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1856695} -2016-05-02 19:24:36 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2128619} -2016-05-02 19:24:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:24:36 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:24:36 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:24:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:24:37 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:24:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:24:37 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:24:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:24:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:24:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:24:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:24:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:24:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:24:37 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:24:37 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:24:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:24:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:24:37 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:24:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:24:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:24:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:24:37 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:24:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:24:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:24:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:24:37 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:24:37 DEBUG Operation:173 - get(String) - start -2016-05-02 19:24:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:24:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:24:37 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:24:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:24:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:24:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:24:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:24:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:24:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:24:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:24:37 INFO connection:71 - Opened connection [connectionId{localValue:42, serverValue:1856719}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1113487, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:24:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:24:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:24:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:24:37 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:24:37 INFO connection:71 - Opened connection [connectionId{localValue:44, serverValue:2128643}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=849289, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:24:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:24:37 INFO connection:71 - Opened connection [connectionId{localValue:41, serverValue:246103}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1207039, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:24:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:24:37 INFO connection:71 - Opened connection [connectionId{localValue:43, serverValue:1542428}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1125445, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:24:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-02 19:24:37 INFO connection:71 - Opened connection [connectionId{localValue:45, serverValue:1856720}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 DEBUG command:56 - Command execution completed -2016-05-02 19:24:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:37 DEBUG command:56 - Command execution completed -2016-05-02 19:24:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:24:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:24:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:24:38 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG query:56 - Query completed -2016-05-02 19:24:38 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:24:38 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:24:38 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:24:38 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG update:56 - Update completed -2016-05-02 19:24:38 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:45, serverValue:1856720}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG query:56 - Query completed -2016-05-02 19:24:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:24:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:24:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:24:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:24:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:24:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:24:38 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:24:38 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:24:38 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:24:38 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:24:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:24:38 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:24:38 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:24:38 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:24:38 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:24:38 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:24:38 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:24:38 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:24:38 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:24:38 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:24:38 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:24:38 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:24:38 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:24:38 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:24:38 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:24:38 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:24:38 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:24:38 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:24:38 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:24:38 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:24:38 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:24:38 INFO connection:71 - Opened connection [connectionId{localValue:47, serverValue:1856721}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 INFO connection:71 - Opened connection [connectionId{localValue:46, serverValue:246104}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1242606, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:24:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=4555782, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:24:38 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:24:38 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:24:38 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:24:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:24:38 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:24:38 INFO connection:71 - Opened connection [connectionId{localValue:49, serverValue:2128644}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=759938, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:24:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:24:38 INFO connection:71 - Opened connection [connectionId{localValue:48, serverValue:1542429}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1192239, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:24:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:24:38 INFO connection:71 - Opened connection [connectionId{localValue:50, serverValue:1856722}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856722}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856722}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856722}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:24:38 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:24:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856722}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856722}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG command:56 - Command execution completed -2016-05-02 19:24:38 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:24:38 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:50, serverValue:1856722}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:38 DEBUG query:56 - Query completed -2016-05-02 19:24:38 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:24:38 DEBUG connection:56 - Closing connection connectionId{localValue:49, serverValue:2128644} -2016-05-02 19:24:38 DEBUG connection:56 - Closing connection connectionId{localValue:46, serverValue:246104} -2016-05-02 19:24:38 INFO connection:71 - Closed connection [connectionId{localValue:50, serverValue:1856722}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:24:38 DEBUG connection:56 - Closing connection connectionId{localValue:48, serverValue:1542429} -2016-05-02 19:24:38 DEBUG connection:56 - Closing connection connectionId{localValue:50, serverValue:1856722} -2016-05-02 19:24:38 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:24:38 DEBUG connection:56 - Closing connection connectionId{localValue:47, serverValue:1856721} -2016-05-02 19:24:38 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:24:38 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:24:38 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:24:38 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:24:38 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:24:38 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:24:38 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:24:38 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:24:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-02 19:24:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:24:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-02 19:24:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:24:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-02 19:24:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:24:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:24:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:24:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:24:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:24:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:24:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:24:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:24:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:24:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:25:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:25:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:25:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:25:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:25:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:25:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:25:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:25:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:25:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:25:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:25:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:25:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:25:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:25:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:25:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:25:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:25:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:25:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:25:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:25:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:25:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:25:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:25:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:25:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:25:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:25:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:25:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:25:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:25:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:25:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:25:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:25:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:25:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:25:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:25:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:25:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:25:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:25:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:25:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:25:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:25:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:25:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:25:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:25:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:25:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:25:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:25:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:25:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:25:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:25:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:26:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:26:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:26:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:26:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:26:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:26:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:26:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:26:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:26:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:26:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:26:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:26:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:26:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:26:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:26:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:26:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:26:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:26:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:26:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:26:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:26:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:26:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:26:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:26:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:26:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:26:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:26:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:26:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:26:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:26:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:26:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:27:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:27:05 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:27:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:27:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:27:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:27:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:27:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:27:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:27:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:27:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:27:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:27:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:27:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:27:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:27:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:27:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:27:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:27:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:27:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:27:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:27:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:27:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:38 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:27:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:38 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:27:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:38 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:27:38 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:27:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:27:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:27:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:27:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:27:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:27:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:27:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:27:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:27:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:28:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:28:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:28:06 DEBUG connection:56 - Closing connection connectionId{localValue:44, serverValue:2128643} -2016-05-02 19:28:06 INFO connection:71 - Closed connection [connectionId{localValue:45, serverValue:1856720}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:28:06 DEBUG connection:56 - Closing connection connectionId{localValue:45, serverValue:1856720} -2016-05-02 19:28:06 DEBUG connection:56 - Closing connection connectionId{localValue:42, serverValue:1856719} -2016-05-02 19:28:06 DEBUG connection:56 - Closing connection connectionId{localValue:41, serverValue:246103} -2016-05-02 19:28:06 DEBUG connection:56 - Closing connection connectionId{localValue:43, serverValue:1542428} -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:28:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:28:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:28:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:28:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:08 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:28:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:28:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:28:08 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:28:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:28:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:28:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:28:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:28:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:28:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:28:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:28:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:28:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:28:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:28:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:28:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:28:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:28:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:28:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:28:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:28:08 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:28:08 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:28:08 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:28:08 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:28:08 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:28:08 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:28:08 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:28:08 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:28:08 INFO WorkspaceExplorerServiceImpl:142 - end time - 151 msc 0 sec -2016-05-02 19:28:08 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:28:15 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:28:15 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:28:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:28:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:15 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:28:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:28:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:15 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:28:15 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:28:15 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:28:15 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:28:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:28:15 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:28:15 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 19:28:15 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 19:28:15 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:28:15 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:28:15 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:28:15 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:28:15 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:28:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:28:15 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:28:15 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:28:15 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:28:15 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:28:15 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:28:15 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:15 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:15 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:15 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:28:15 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:28:15 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:28:15 INFO connection:71 - Opened connection [connectionId{localValue:52, serverValue:246142}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=912744, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:15 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:28:15 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:15 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:15 INFO connection:71 - Opened connection [connectionId{localValue:54, serverValue:2128683}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=907622, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:15 INFO connection:71 - Opened connection [connectionId{localValue:51, serverValue:1856759}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1289089, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:15 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:15 INFO connection:71 - Opened connection [connectionId{localValue:53, serverValue:1542467}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1167771, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:28:15 INFO connection:71 - Opened connection [connectionId{localValue:55, serverValue:1856760}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1856760}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG command:56 - Command execution completed -2016-05-02 19:28:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1856760}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG command:56 - Command execution completed -2016-05-02 19:28:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1856760}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG command:56 - Command execution completed -2016-05-02 19:28:15 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:28:15 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1856760}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG command:56 - Command execution completed -2016-05-02 19:28:15 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1856760}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG command:56 - Command execution completed -2016-05-02 19:28:15 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:55, serverValue:1856760}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:28:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:28:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:28:15 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:28:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:28:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:15 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:28:15 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:28:15 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:28:15 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:28:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 52 msc 0 sec -2016-05-02 19:28:15 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:28:15 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:28:15 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:28:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:28:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:28:16 DEBUG query:56 - Query completed -2016-05-02 19:28:16 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 19:28:16 DEBUG connection:56 - Closing connection connectionId{localValue:54, serverValue:2128683} -2016-05-02 19:28:16 INFO connection:71 - Closed connection [connectionId{localValue:55, serverValue:1856760}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:28:16 DEBUG connection:56 - Closing connection connectionId{localValue:55, serverValue:1856760} -2016-05-02 19:28:16 DEBUG connection:56 - Closing connection connectionId{localValue:52, serverValue:246142} -2016-05-02 19:28:16 DEBUG connection:56 - Closing connection connectionId{localValue:53, serverValue:1542467} -2016-05-02 19:28:16 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:28:16 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:28:16 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:28:16 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 19:28:16 DEBUG connection:56 - Closing connection connectionId{localValue:51, serverValue:1856759} -2016-05-02 19:28:16 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:28:16 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:28:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:28:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:16 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:28:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:28:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:16 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:28:16 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:28:16 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:28:16 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:28:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:28:16 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:28:16 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 19:28:16 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:28:16 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:28:16 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:28:16 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:28:16 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:28:16 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:28:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:28:16 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:28:16 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:28:16 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:28:16 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:28:16 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:28:16 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:16 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:16 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:16 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:28:16 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:28:16 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:28:16 INFO connection:71 - Opened connection [connectionId{localValue:57, serverValue:1856762}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1313143, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:16 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:28:16 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:16 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:16 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:16 INFO connection:71 - Opened connection [connectionId{localValue:56, serverValue:246143}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 INFO connection:71 - Opened connection [connectionId{localValue:59, serverValue:2128684}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=907081, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=713335, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:16 INFO connection:71 - Opened connection [connectionId{localValue:58, serverValue:1542468}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1184364, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:28:16 INFO connection:71 - Opened connection [connectionId{localValue:60, serverValue:1856763}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1856763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG command:56 - Command execution completed -2016-05-02 19:28:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1856763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:28:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:28:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:28:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:28:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:16 DEBUG command:56 - Command execution completed -2016-05-02 19:28:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1856763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG command:56 - Command execution completed -2016-05-02 19:28:16 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:28:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1856763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG command:56 - Command execution completed -2016-05-02 19:28:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1856763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 DEBUG command:56 - Command execution completed -2016-05-02 19:28:16 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:60, serverValue:1856763}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:16 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:28:16 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:28:16 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:28:16 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:28:16 INFO WorkspaceExplorerServiceImpl:188 - end time - 50 msc 0 sec -2016-05-02 19:28:16 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:28:16 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:28:16 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:28:16 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:28:16 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:28:17 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:28:17 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:28:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:28:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:28:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:28:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:17 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:28:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:28:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:28:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:28:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:17 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:28:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:28:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:28:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:28:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:17 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:28:17 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:28:17 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:28:17 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:28:18 DEBUG query:56 - Query completed -2016-05-02 19:28:18 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:59, serverValue:2128684} -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:56, serverValue:246143} -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:58, serverValue:1542468} -2016-05-02 19:28:18 INFO connection:71 - Closed connection [connectionId{localValue:60, serverValue:1856763}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:60, serverValue:1856763} -2016-05-02 19:28:18 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:57, serverValue:1856762} -2016-05-02 19:28:18 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:28:18 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:28:18 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 19:28:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:28:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:28:18 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:28:18 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:28:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:18 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:28:18 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:28:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:28:18 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:28:18 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:28:18 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:28:18 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:28:18 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:28:18 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:28:18 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:28:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:28:18 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:28:18 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:28:18 DEBUG Operation:173 - get(String) - start -2016-05-02 19:28:18 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:28:18 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:28:18 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:28:18 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:28:18 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:18 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:18 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:28:18 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:28:18 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:61, serverValue:246144}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1071503, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:18 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:28:18 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:18 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:64, serverValue:2128685}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=692163, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:62, serverValue:1856764}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1129307, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:18 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:63, serverValue:1542469}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1197996, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:65, serverValue:1856765}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:28:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:28:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:28:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG query:56 - Query completed -2016-05-02 19:28:18 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:28:18 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:28:18 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:28:18 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG update:56 - Update completed -2016-05-02 19:28:18 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:65, serverValue:1856765}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG query:56 - Query completed -2016-05-02 19:28:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:28:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:28:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:28:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:28:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:28:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:28:18 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:28:18 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:28:18 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:28:18 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:28:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:28:18 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:28:18 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:28:18 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:28:18 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:28:18 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:28:18 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:28:18 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:28:18 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:28:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:28:18 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:28:18 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:28:18 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:28:18 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:28:18 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:28:18 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:18 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:18 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@5e4e33f4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@73a6c6e6, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@4a4c615b, socketFactory=javax.net.DefaultSocketFactory@5c8bc378, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:28:18 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:28:18 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:66, serverValue:246145}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:67, serverValue:1856766}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1266462, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:18 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:28:18 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=928187, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:18 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:18 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:69, serverValue:2128686}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=672280, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:68, serverValue:1542470}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1728168, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:28:18 INFO connection:71 - Opened connection [connectionId{localValue:70, serverValue:1856767}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1856767}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1856767}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1856767}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:28:18 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:28:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1856767}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1856767}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG command:56 - Command execution completed -2016-05-02 19:28:18 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:28:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:70, serverValue:1856767}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG query:56 - Query completed -2016-05-02 19:28:18 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:69, serverValue:2128686} -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:66, serverValue:246145} -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:68, serverValue:1542470} -2016-05-02 19:28:18 INFO connection:71 - Closed connection [connectionId{localValue:70, serverValue:1856767}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:70, serverValue:1856767} -2016-05-02 19:28:18 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:28:18 DEBUG connection:56 - Closing connection connectionId{localValue:67, serverValue:1856766} -2016-05-02 19:28:18 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:28:18 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:28:18 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:28:18 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:28:18 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:28:18 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:28:18 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:28:18 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:28:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:28:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:28:21 DEBUG connection:56 - Closing connection connectionId{localValue:64, serverValue:2128685} -2016-05-02 19:28:21 DEBUG connection:56 - Closing connection connectionId{localValue:63, serverValue:1542469} -2016-05-02 19:28:21 INFO connection:71 - Closed connection [connectionId{localValue:65, serverValue:1856765}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:28:21 DEBUG connection:56 - Closing connection connectionId{localValue:61, serverValue:246144} -2016-05-02 19:28:21 DEBUG connection:56 - Closing connection connectionId{localValue:65, serverValue:1856765} -2016-05-02 19:28:21 DEBUG connection:56 - Closing connection connectionId{localValue:62, serverValue:1856764} -2016-05-02 19:28:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:28:55 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:29:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:29:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:37:45 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:37:45 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:37:45 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:37:45 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:37:45 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:37:45 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:37:45 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:37:45 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@49f3ca90 -2016-05-02 19:37:45 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:37:45 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:37:45 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:37:45 DEBUG TemplateModel:83 - 2016-05-02 19:37:45, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:37:45 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:37:45 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:37:47 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:37:47 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:37:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:37:47 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:37:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:37:47 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:37:47 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:37:47 DEBUG TemplateModel:83 - 2016-05-02 19:37:47, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:37:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:37:47 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:37:47 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 123 ms -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:37:47 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:37:47 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:37:47 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:37:47 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:37:47 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@9603f9 -2016-05-02 19:37:47 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@5056003e -2016-05-02 19:37:47 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@54203c -2016-05-02 19:37:47 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@467f33b8 -2016-05-02 19:37:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 108 ms -2016-05-02 19:37:48 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:37:48 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:37:48 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:37:48 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:37:48 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:37:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:37:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:37:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-02 19:37:48 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:37:48 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:37:48 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:37:48 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:37:48 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:37:48 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:37:48 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:37:48 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:37:48 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:37:48 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:37:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:48 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:37:48 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:37:48 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:37:48 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:37:48 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:37:48 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:37:48 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:37:48 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:37:48 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-02 19:37:48 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:37:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:37:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:48 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:37:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:48 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:37:49 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:37:49 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:37:49 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:37:49 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:37:49 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:37:49 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:37:49 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:37:49 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:49 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:37:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:37:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:37:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:37:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:37:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:37:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:49 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:37:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:37:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:50 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:37:50 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:37:50 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:37:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:37:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:50 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:37:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:37:50 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:37:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:50 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:37:50 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:37:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 142 msc 0 sec -2016-05-02 19:37:50 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:37:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:37:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:50 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:37:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:50 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:37:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:37:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:37:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-02 19:37:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 129 msc 0 sec -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:37:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:37:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:37:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 19:37:50 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:37:50 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:37:50 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:37:50 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:37:50 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:37:50 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:37:50 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:37:50 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:37:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:37:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 348 msc 0 sec -2016-05-02 19:37:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:37:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:37:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:37:55 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:37:55 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:37:55 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:37:56 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:37:56 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:37:56 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:37:56 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:37:56 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:37:56 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:37:56 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:37:56 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:37:56 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:37:56 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:37:56 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:37:56 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:37:56 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:37:56 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:37:56 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:37:56 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:37:56 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:37:56 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:37:56 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:37:56 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:37:56 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:37:56 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:37:56 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:37:56 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:37:56 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:37:56 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:37:56 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:37:56 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:37:56 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:37:56 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:37:56 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:37:56 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:37:56 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:37:56 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:37:56 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:37:56 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:37:56 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:37:56 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:37:56 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:37:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:37:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:56 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:37:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:37:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:37:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:37:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:37:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:37:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:37:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:56 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:56 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:37:56 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:37:56 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:37:56 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:37:56 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:37:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:37:56 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:37:56 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:37:56 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:37:56 INFO WorkspaceExplorerServiceImpl:142 - end time - 187 msc 0 sec -2016-05-02 19:37:56 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:38:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:38:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:38:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:38:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:38:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:38:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:38:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:03 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:38:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:38:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:38:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:38:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:38:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:38:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:38:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:38:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 192 msc 0 sec -2016-05-02 19:38:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:38:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:38:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:06 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:38:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:38:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:38:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:38:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:38:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:38:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:38:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:38:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:38:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:38:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:38:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:38:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:38:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:38:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:38:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:38:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:38:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 173 msc 0 sec -2016-05-02 19:38:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:38:14 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:38:14 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:38:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:38:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:14 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:38:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:38:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:38:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:38:14 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:38:14 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:38:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:38:14 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:38:14 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 19:38:14 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 19:38:14 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:38:14 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:38:14 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:38:14 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:38:14 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:38:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:38:14 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:38:14 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:38:14 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:38:14 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:38:14 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:38:14 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:38:14 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:38:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:38:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:38:14 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:14 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:14 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:38:14 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:38:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:38:14 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:38:14 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:38:14 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:38:14 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:38:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 50 msc 0 sec -2016-05-02 19:38:14 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:38:14 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:38:14 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1856866}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1536185, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:14 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:38:14 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:14 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:14 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:14 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2128786}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1234352, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:14 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1542571}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1579321, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:38:14 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1856867}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856867}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG command:56 - Command execution completed -2016-05-02 19:38:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856867}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG command:56 - Command execution completed -2016-05-02 19:38:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856867}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG command:56 - Command execution completed -2016-05-02 19:38:14 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:38:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856867}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG command:56 - Command execution completed -2016-05-02 19:38:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856867}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG command:56 - Command execution completed -2016-05-02 19:38:14 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1856867}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:246245}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1792899, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:38:15 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:38:15 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:38:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:38:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:38:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:38:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:15 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:38:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:38:15 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:38:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:38:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:15 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:38:15 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:38:15 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:38:15 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:38:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:38:15 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:38:15 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 19:38:15 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:38:15 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:38:15 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:38:15 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:38:15 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:38:15 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:38:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:38:15 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:38:15 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:38:15 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:38:15 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:38:15 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:38:15 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:15 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:15 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:15 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:38:15 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:38:15 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:38:15 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1856868}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1476455, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:15 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:38:15 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:15 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:15 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:15 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:246246}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1380580, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:15 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2128787}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1094736, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:38:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:15 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:38:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:15 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:38:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:38:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:15 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1542572}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1554945, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:38:15 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:38:15 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:38:15 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1856869}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856869}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG command:56 - Command execution completed -2016-05-02 19:38:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856869}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG command:56 - Command execution completed -2016-05-02 19:38:15 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856869}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG command:56 - Command execution completed -2016-05-02 19:38:15 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:38:15 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856869}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG command:56 - Command execution completed -2016-05-02 19:38:15 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856869}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 DEBUG command:56 - Command execution completed -2016-05-02 19:38:15 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1856869}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:15 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:38:15 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:38:15 INFO WorkspaceExplorerServiceImpl:188 - end time - 44 msc 0 sec -2016-05-02 19:38:15 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:38:15 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:38:15 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:38:15 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:38:15 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:38:15 DEBUG query:56 - Query completed -2016-05-02 19:38:15 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 19:38:15 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2128786} -2016-05-02 19:38:15 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1542571} -2016-05-02 19:38:15 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:246245} -2016-05-02 19:38:15 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1856867}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:38:15 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1856867} -2016-05-02 19:38:15 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1856866} -2016-05-02 19:38:15 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:38:15 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:38:15 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:38:15 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 19:38:16 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:38:16 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:16 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:38:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:38:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:16 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:38:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:16 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:38:16 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:38:16 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:38:16 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:38:16 DEBUG query:56 - Query completed -2016-05-02 19:38:16 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 19:38:16 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2128787} -2016-05-02 19:38:16 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:246246} -2016-05-02 19:38:16 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1542572} -2016-05-02 19:38:16 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1856869}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:38:16 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1856869} -2016-05-02 19:38:16 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:38:16 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:38:16 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:38:16 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 19:38:16 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1856868} -2016-05-02 19:38:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:38:16 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:38:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:38:16 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:38:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:16 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:38:16 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:38:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:38:16 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:38:16 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:38:16 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:38:16 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:38:16 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:38:16 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:38:16 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:38:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:38:16 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:38:16 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:38:16 DEBUG Operation:173 - get(String) - start -2016-05-02 19:38:16 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:38:16 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:38:16 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:38:16 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:38:16 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:16 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:16 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:16 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:38:16 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:38:16 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:246247}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1368966, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:17 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:38:17 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:17 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1856870}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2128788}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1200355, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=918900, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:17 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1542573}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1289208, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1856871}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:38:17 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:38:17 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:38:17 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG query:56 - Query completed -2016-05-02 19:38:17 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:38:17 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:38:17 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:38:17 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG update:56 - Update completed -2016-05-02 19:38:17 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1856871}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG query:56 - Query completed -2016-05-02 19:38:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:38:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:38:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:38:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:38:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:38:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:38:17 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:38:17 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:38:17 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:38:17 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:38:17 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:38:17 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:38:17 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:38:17 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:38:17 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:38:17 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:38:17 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:38:17 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:38:17 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:38:17 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:38:17 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:38:17 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:38:17 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:38:17 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:38:17 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:38:17 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:17 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:17 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:38:17 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:38:17 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1856872}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1308649, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:17 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:38:17 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:17 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:38:17 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:246248}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2128790}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1307657, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:17 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=862263, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1542574}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1317708, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:38:17 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1856873}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856873}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856873}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856873}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:38:17 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:38:17 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856873}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856873}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG command:56 - Command execution completed -2016-05-02 19:38:17 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:38:17 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1856873}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG query:56 - Query completed -2016-05-02 19:38:17 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:38:17 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2128790} -2016-05-02 19:38:17 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:246248} -2016-05-02 19:38:17 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1542574} -2016-05-02 19:38:17 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1856873}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:38:17 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1856873} -2016-05-02 19:38:17 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:38:17 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1856872} -2016-05-02 19:38:17 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:38:17 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:38:17 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:38:17 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:38:17 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:38:17 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:38:17 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:38:17 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:38:17 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:17 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:38:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:38:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:38:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:38:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:38:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:38:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:38:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:38:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:38:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:38:47 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:38:47 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:38:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:38:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:38:47 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:38:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.9 ms, state=CONNECTED}] -2016-05-02 19:38:47 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:38:47 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.9 ms, state=CONNECTED}] -2016-05-02 19:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2128788} -2016-05-02 19:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1542573} -2016-05-02 19:38:56 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1856871}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1856871} -2016-05-02 19:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:246247} -2016-05-02 19:38:56 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1856870} -2016-05-02 19:39:11 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:11 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:39:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:39:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:39:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:11 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:39:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:39:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:39:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:11 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:39:11 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:39:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:39:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:11 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:11 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:11 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:11 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:39:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:39:12 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:39:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:39:12 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-02 19:39:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:12 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:12 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:39:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:12 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 19:39:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:39:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:39:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:39:12 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:39:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:39:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:12 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:12 DEBUG Operation:173 - get(String) - start -2016-05-02 19:39:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:39:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:39:12 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:39:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:39:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:39:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:39:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1856884}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1103468, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:39:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:246259}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1192080, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2128798}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=802104, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1542583}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1214601, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1856885}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:39:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG query:56 - Query completed -2016-05-02 19:39:12 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 19:39:12 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:39:12 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:39:12 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG update:56 - Update completed -2016-05-02 19:39:12 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:25, serverValue:1856885}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG query:56 - Query completed -2016-05-02 19:39:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:12 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:12 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-02 19:39:12 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:39:12 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:39:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:12 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 19:39:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:39:12 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:39:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:39:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:39:12 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:39:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:39:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:39:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:39:12 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:39:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:39:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:39:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:39:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:246260}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1251548, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:39:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2128799}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1856886}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1476308, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1200182, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1542585}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1140917, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-02 19:39:12 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1856887}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856887}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856887}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856887}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:12 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856887}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1856887}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG command:56 - Command execution completed -2016-05-02 19:39:12 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1856887}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:12 DEBUG query:56 - Query completed -2016-05-02 19:39:12 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 19:39:12 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2128799} -2016-05-02 19:39:12 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:246260} -2016-05-02 19:39:12 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1542585} -2016-05-02 19:39:12 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1856887}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:39:12 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1856887} -2016-05-02 19:39:12 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:39:12 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1856886} -2016-05-02 19:39:12 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:12 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:39:12 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:39:12 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:39:12 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:39:12 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:39:12 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 19:39:12 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 19:39:18 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:39:18 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:39:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:39:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:39:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:39:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:18 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:39:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:39:18 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:39:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:39:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:18 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:39:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:39:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:39:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:39:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:18 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:39:18 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:39:18 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:39:18 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:39:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:39:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:39:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:39:19 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:39:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:39:19 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:39:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:19 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:19 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:39:19 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:39:19 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:39:19 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:39:19 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:39:19 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:39:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:19 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:19 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:39:19 DEBUG Operation:173 - get(String) - start -2016-05-02 19:39:19 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:39:19 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:39:19 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:39:19 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:39:19 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:19 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:19 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:39:19 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:39:19 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1856890}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1840777, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:19 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:39:19 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:19 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:19 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:246262}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1251112, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2128803}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1125307, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1542587}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1021910, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1856891}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:39:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG query:56 - Query completed -2016-05-02 19:39:19 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:39:19 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:39:19 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:39:19 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG update:56 - Update completed -2016-05-02 19:39:19 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1856891}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG query:56 - Query completed -2016-05-02 19:39:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:39:19 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:39:19 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:39:19 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:39:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:19 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:19 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:39:19 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:39:19 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:39:19 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:39:19 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:39:19 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:39:19 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:39:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:19 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:19 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:39:19 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:39:19 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:39:19 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:39:19 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:19 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:19 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:39:19 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:39:19 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:246263}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1856892}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1261466, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:19 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:39:19 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1408112, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:19 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:19 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2128804}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=920965, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1542588}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1047156, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-02 19:39:19 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1856893}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:39:19 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1856893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG command:56 - Command execution completed -2016-05-02 19:39:19 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:39:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1856893}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:19 DEBUG query:56 - Query completed -2016-05-02 19:39:19 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2128804} -2016-05-02 19:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:246263} -2016-05-02 19:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1542588} -2016-05-02 19:39:19 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1856893}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1856893} -2016-05-02 19:39:19 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:39:19 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1856892} -2016-05-02 19:39:19 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:39:19 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:39:19 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:39:19 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:39:19 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:39:19 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:39:19 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:39:19 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2128803} -2016-05-02 19:39:20 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1856891}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1856891} -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1542587} -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:246262} -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1856890} -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2128798} -2016-05-02 19:39:20 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1856885}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1856885} -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:246259} -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1542583} -2016-05-02 19:39:20 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1856884} -2016-05-02 19:39:33 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:33 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:39:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:39:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:39:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:33 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:39:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:39:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:39:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:33 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:39:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:39:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:39:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:33 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:33 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:33 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:33 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:39:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:39:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:39:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:39:34 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-02 19:39:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:34 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:34 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:39:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:34 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 19:39:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:39:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:39:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:39:34 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:39:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:39:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:34 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:34 DEBUG Operation:173 - get(String) - start -2016-05-02 19:39:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:39:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:39:34 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:39:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:39:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:39:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:39:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:41, serverValue:246266}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=4886116, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:39:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:42, serverValue:1856897}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:44, serverValue:2128805}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=961090, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1426129, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:34 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:43, serverValue:1542591}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1157007, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:45, serverValue:1856898}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:39:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:34 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG query:56 - Query completed -2016-05-02 19:39:34 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 19:39:34 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:39:34 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:39:34 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG update:56 - Update completed -2016-05-02 19:39:34 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:45, serverValue:1856898}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG query:56 - Query completed -2016-05-02 19:39:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:39:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:39:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:39:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:39:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:39:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:39:34 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-02 19:39:34 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-02 19:39:34 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:39:34 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:39:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:34 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-02 19:39:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:39:34 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:39:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:39:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:39:34 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:39:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:39:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:39:34 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:39:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:39:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:39:34 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:39:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:39:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@bc4acb7f, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@17747678, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5f0dcc4f, socketFactory=javax.net.DefaultSocketFactory@2e0874a, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:39:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:39:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:47, serverValue:1856899}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1150081, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:39:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:46, serverValue:246267}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:39:34 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1024138, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:49, serverValue:2128806}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=819017, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:48, serverValue:1542592}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 INFO connection:71 - Opened connection [connectionId{localValue:50, serverValue:1856900}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1229038, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:39:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856900}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856900}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856900}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:34 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856900}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1856900}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG command:56 - Command execution completed -2016-05-02 19:39:34 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:34 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:50, serverValue:1856900}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG query:56 - Query completed -2016-05-02 19:39:34 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-02 19:39:34 DEBUG connection:56 - Closing connection connectionId{localValue:49, serverValue:2128806} -2016-05-02 19:39:34 INFO connection:71 - Closed connection [connectionId{localValue:50, serverValue:1856900}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:39:34 DEBUG connection:56 - Closing connection connectionId{localValue:46, serverValue:246267} -2016-05-02 19:39:34 DEBUG connection:56 - Closing connection connectionId{localValue:48, serverValue:1542592} -2016-05-02 19:39:34 DEBUG connection:56 - Closing connection connectionId{localValue:50, serverValue:1856900} -2016-05-02 19:39:34 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:39:34 DEBUG connection:56 - Closing connection connectionId{localValue:47, serverValue:1856899} -2016-05-02 19:39:34 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-02 19:39:34 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:39:34 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:39:34 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:39:34 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:39:34 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-02 19:39:34 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 19:39:34 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:39:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=6.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:39:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:39:35 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:39:36 INFO connection:71 - Closed connection [connectionId{localValue:45, serverValue:1856898}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:39:36 DEBUG connection:56 - Closing connection connectionId{localValue:45, serverValue:1856898} -2016-05-02 19:39:36 DEBUG connection:56 - Closing connection connectionId{localValue:43, serverValue:1542591} -2016-05-02 19:39:36 DEBUG connection:56 - Closing connection connectionId{localValue:44, serverValue:2128805} -2016-05-02 19:39:36 DEBUG connection:56 - Closing connection connectionId{localValue:41, serverValue:246266} -2016-05-02 19:39:36 DEBUG connection:56 - Closing connection connectionId{localValue:42, serverValue:1856897} -2016-05-02 19:40:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:40:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:41:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:41:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:42:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:42:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:44:00 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:44:00 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:44:00 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:44:00 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:44:00 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:44:00 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:44:00 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:44:00 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@17ca4b0b -2016-05-02 19:44:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:00 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:44:00 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:44:00 DEBUG TemplateModel:83 - 2016-05-02 19:44:00, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:44:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:44:00 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:44:01 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:44:01 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:44:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:44:01 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:44:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:01 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:44:01 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:44:01 DEBUG TemplateModel:83 - 2016-05-02 19:44:01, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:44:01 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:44:01 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:44:02 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 130 ms -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:44:02 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:44:02 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:44:02 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:44:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:44:02 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@6a43568a -2016-05-02 19:44:02 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@15f9db52 -2016-05-02 19:44:02 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@665f06d0 -2016-05-02 19:44:02 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@339fd217 -2016-05-02 19:44:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 102 ms -2016-05-02 19:44:02 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:44:02 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:44:02 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:44:02 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:44:02 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:44:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:44:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:44:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 22 ms -2016-05-02 19:44:02 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:44:02 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:44:02 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:44:02 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:44:02 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:44:02 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:44:02 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:44:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:02 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:44:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:44:02 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:44:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:02 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:44:02 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:44:02 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:44:02 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:44:02 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:44:02 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:44:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:44:03 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:44:03 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:44:03 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 19:44:03 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:44:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:03 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:44:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:03 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:44:03 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:44:03 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:44:03 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:44:03 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:44:03 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:44:03 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:44:03 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:44:03 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:44:03 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:44:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:03 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:44:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:44:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:03 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:44:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:44:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:04 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:44:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:44:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:04 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:44:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:44:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:04 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:44:04 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:44:04 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:44:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:44:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:44:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:44:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:04 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:44:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:44:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:04 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:44:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:04 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:44:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 121 msc 0 sec -2016-05-02 19:44:04 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:44:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:44:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:44:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:44:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:04 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:44:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:04 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:44:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:44:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:04 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:44:04 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:44:04 INFO WorkspaceExplorerServiceImpl:188 - end time - 119 msc 0 sec -2016-05-02 19:44:04 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 35 ms -2016-05-02 19:44:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:44:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:44:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:44:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 19:44:05 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:44:05 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:44:05 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:44:05 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:44:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:44:05 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:44:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:44:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:44:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:44:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-02 19:44:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:44:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:44:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:44:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:05 INFO WorkspaceExplorerServiceImpl:188 - end time - 330 msc 0 sec -2016-05-02 19:44:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:44:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:44:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:44:10 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:44:10 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:44:10 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:44:11 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:44:11 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:44:11 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:44:11 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:44:11 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:44:11 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:44:11 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:44:11 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:44:11 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:44:11 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:44:11 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:44:11 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:44:11 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:44:11 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:44:11 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:44:11 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:44:11 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:44:11 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:44:11 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:44:11 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:44:11 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:44:11 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:44:11 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:44:11 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:44:11 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:44:11 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:44:11 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:44:11 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:44:11 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:44:11 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:44:11 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:44:11 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:44:11 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:44:11 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:44:11 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:44:11 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:44:11 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:44:11 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:44:11 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:44:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:44:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:11 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:44:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:44:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:44:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:11 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:44:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:44:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:44:11 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:44:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:11 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:11 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:11 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:44:11 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:44:11 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:44:11 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:44:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:44:11 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:44:11 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:44:11 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:44:11 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-02 19:44:11 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:44:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:44:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:44:13 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:44:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:13 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:44:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:44:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:44:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:44:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:44:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:44:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:44:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:44:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:44:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:44:13 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:44:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:44:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:44:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:44:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:44:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:44:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:44:14 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:44:14 INFO WorkspaceExplorerServiceImpl:142 - end time - 166 msc 0 sec -2016-05-02 19:44:14 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:44:19 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:44:19 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:44:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:44:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:44:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:44:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:19 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:44:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:44:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:19 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:44:19 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:44:19 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:44:19 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:44:20 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:44:20 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:44:20 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 19:44:20 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 19:44:20 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:44:20 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:44:20 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:44:20 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:44:20 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:44:20 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:44:20 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:44:20 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:44:20 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:44:20 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:44:20 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:44:20 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:44:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:44:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:44:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:44:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:20 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:44:20 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:44:20 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:20 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:20 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@861ab4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@65a9fdc4, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7b538300, socketFactory=javax.net.DefaultSocketFactory@27bdb441, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:44:20 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:44:20 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:44:20 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:44:20 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:44:20 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:44:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 64 msc 0 sec -2016-05-02 19:44:20 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:44:20 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:44:20 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:246316}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1856948}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1434229, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:20 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:44:20 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:20 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=4433151, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:20 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2128857}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3451683, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:20 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1542641}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2306296, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 19:44:20 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1856949}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856949}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG command:56 - Command execution completed -2016-05-02 19:44:20 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856949}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG command:56 - Command execution completed -2016-05-02 19:44:20 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856949}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG command:56 - Command execution completed -2016-05-02 19:44:20 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:44:20 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856949}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG command:56 - Command execution completed -2016-05-02 19:44:20 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856949}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG command:56 - Command execution completed -2016-05-02 19:44:20 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1856949}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:44:21 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:44:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:21 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:44:21 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:44:21 DEBUG query:56 - Query completed -2016-05-02 19:44:21 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 19:44:21 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2128857} -2016-05-02 19:44:21 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:246316} -2016-05-02 19:44:21 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1542641} -2016-05-02 19:44:21 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1856949}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:44:21 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1856949} -2016-05-02 19:44:21 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1856948} -2016-05-02 19:44:21 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:44:21 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:44:21 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 19:44:21 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:44:21 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:44:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:44:21 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:44:21 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 19:44:21 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:44:21 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:44:21 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:44:21 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:44:21 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:44:21 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:44:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:44:21 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:44:21 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:44:21 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:44:21 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:44:21 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:44:21 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:21 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:21 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:21 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@861ab4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@65a9fdc4, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7b538300, socketFactory=javax.net.DefaultSocketFactory@27bdb441, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:44:21 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:44:21 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:44:21 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:246317}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1213735, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:21 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:44:21 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:21 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:21 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2128858}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=972689, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:21 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1856950}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1378062, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:21 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:21 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1542642}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1289473, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:44:21 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1856951}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:44:21 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:44:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856951}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:21 DEBUG command:56 - Command execution completed -2016-05-02 19:44:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856951}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG command:56 - Command execution completed -2016-05-02 19:44:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856951}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG command:56 - Command execution completed -2016-05-02 19:44:21 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:44:21 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856951}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:44:21 DEBUG command:56 - Command execution completed -2016-05-02 19:44:21 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856951}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG command:56 - Command execution completed -2016-05-02 19:44:21 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1856951}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:44:21 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:44:21 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:188 - end time - 55 msc 0 sec -2016-05-02 19:44:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:44:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:44:21 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:44:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:44:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:44:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:44:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:44:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:44:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:44:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:44:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:44:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:21 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:44:21 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:44:21 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:44:21 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:44:22 DEBUG query:56 - Query completed -2016-05-02 19:44:22 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 19:44:22 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2128858} -2016-05-02 19:44:22 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:246317} -2016-05-02 19:44:22 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1542642} -2016-05-02 19:44:22 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1856951}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:44:22 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1856951} -2016-05-02 19:44:22 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:44:22 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1856950} -2016-05-02 19:44:22 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:44:22 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:44:22 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 19:44:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:44:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:44:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:44:22 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:44:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:22 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:44:22 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:44:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:44:22 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:44:22 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:44:22 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:44:22 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:44:22 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:44:22 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:44:22 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:44:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:44:22 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:44:22 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:44:22 DEBUG Operation:173 - get(String) - start -2016-05-02 19:44:22 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:44:22 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:44:22 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:44:22 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:44:22 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:22 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:22 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:22 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@861ab4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@65a9fdc4, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7b538300, socketFactory=javax.net.DefaultSocketFactory@27bdb441, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:44:22 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:44:22 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:44:22 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:246318}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1431184, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:22 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:44:22 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:22 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:22 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1856954}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1397015, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:22 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:22 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2128859}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1446776, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:22 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1542643}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2427141, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 19:44:22 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1856955}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG command:56 - Command execution completed -2016-05-02 19:44:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG command:56 - Command execution completed -2016-05-02 19:44:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG command:56 - Command execution completed -2016-05-02 19:44:22 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:44:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG command:56 - Command execution completed -2016-05-02 19:44:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG command:56 - Command execution completed -2016-05-02 19:44:22 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:44:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG command:56 - Command execution completed -2016-05-02 19:44:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG command:56 - Command execution completed -2016-05-02 19:44:22 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:44:22 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG query:56 - Query completed -2016-05-02 19:44:22 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:44:22 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:44:22 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:44:22 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG update:56 - Update completed -2016-05-02 19:44:22 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1856955}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG query:56 - Query completed -2016-05-02 19:44:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:44:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:44:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:44:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:44:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:44:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:44:22 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:44:22 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:44:22 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:44:22 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:44:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:44:22 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:44:22 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:44:22 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:44:22 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:44:22 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:44:22 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:44:22 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:44:22 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:44:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:44:22 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:44:22 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:44:22 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:44:22 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:44:22 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:44:22 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:22 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:22 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:22 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@861ab4b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@65a9fdc4, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@7b538300, socketFactory=javax.net.DefaultSocketFactory@27bdb441, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:44:22 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:44:22 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:44:22 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:246319}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1856956}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1456186, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:23 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:44:23 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=4393929, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:23 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:44:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:23 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:23 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2128860}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=814697, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:44:23 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1542644}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1658773, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:44:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:44:23 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1856957}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856957}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG command:56 - Command execution completed -2016-05-02 19:44:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856957}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG command:56 - Command execution completed -2016-05-02 19:44:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856957}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG command:56 - Command execution completed -2016-05-02 19:44:23 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:44:23 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:44:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856957}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG command:56 - Command execution completed -2016-05-02 19:44:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856957}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG command:56 - Command execution completed -2016-05-02 19:44:23 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:44:23 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1856957}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:23 DEBUG query:56 - Query completed -2016-05-02 19:44:23 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:44:23 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2128860} -2016-05-02 19:44:23 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:246319} -2016-05-02 19:44:23 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1542644} -2016-05-02 19:44:23 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1856957}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:44:23 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1856957} -2016-05-02 19:44:23 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:44:23 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1856956} -2016-05-02 19:44:23 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:44:23 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:44:23 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:44:23 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:44:23 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:44:23 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:44:23 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:44:23 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:44:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:32 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 19:44:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 19:44:32 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-02 19:44:32 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:44:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:42 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:44:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:44:42 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:44:42 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:44:52 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:44:52 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:44:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:44:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:44:52 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:44:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:44:52 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:44:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:44:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:44:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:45:02 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:45:02 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:45:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:02 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:45:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:02 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:45:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:45:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:45:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:45:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:45:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:45:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:45:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:45:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:45:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:45:32 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:45:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:32 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:45:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:45:32 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:45:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:45:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:45:42 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:45:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:45:42 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:45:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:45:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:45:42 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:45:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:46:09 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:46:09 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:46:09 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:46:09 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:46:09 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:46:09 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:46:09 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:46:09 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@269142a2 -2016-05-02 19:46:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:09 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:46:09 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:46:09 DEBUG TemplateModel:83 - 2016-05-02 19:46:09, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:46:09 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:46:09 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:46:10 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:46:10 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:46:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:46:10 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:46:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:10 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:46:10 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:46:10 DEBUG TemplateModel:83 - 2016-05-02 19:46:10, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:46:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:46:10 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:46:10 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 118 ms -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:46:11 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:46:11 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:46:11 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:46:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:46:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@10b30150 -2016-05-02 19:46:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@68b87631 -2016-05-02 19:46:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@5c42c11b -2016-05-02 19:46:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@63a0c947 -2016-05-02 19:46:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 149 ms -2016-05-02 19:46:11 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:46:11 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:46:11 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:46:11 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:46:11 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:46:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:46:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:46:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 20 ms -2016-05-02 19:46:11 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:46:11 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:46:11 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:46:11 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:46:11 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:46:11 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:46:11 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:46:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:46:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:46:11 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:46:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:11 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:46:11 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:46:11 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:46:11 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:46:11 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:46:11 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:46:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-02 19:46:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:46:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:46:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 19:46:12 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:46:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:12 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:46:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:12 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:46:12 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:46:12 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:46:12 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:46:12 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:46:12 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:46:12 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:46:12 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:46:12 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:46:12 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:46:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:12 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:46:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:46:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:46:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:46:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:13 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:46:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:46:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:14 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:46:14 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:46:14 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:14 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:46:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:46:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:46:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:14 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:46:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:14 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:46:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 117 msc 0 sec -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:14 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:46:14 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:46:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:14 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:46:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:46:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:46:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 22 ms -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:46:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:46:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:46:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 172 msc 0 sec -2016-05-02 19:46:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-02 19:46:14 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:46:14 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:46:14 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:46:14 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:46:14 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:46:14 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:46:14 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:46:14 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-02 19:46:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:46:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 349 msc 0 sec -2016-05-02 19:46:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:46:17 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:46:17 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:46:17 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:46:17 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:46:18 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:46:18 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:46:18 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:46:18 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:46:18 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:46:18 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:46:18 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:46:18 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:46:18 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:46:18 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:46:18 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:46:18 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:46:18 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:46:18 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:46:18 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:46:18 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:46:18 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:46:18 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:46:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:46:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:46:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:46:18 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:46:18 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:46:18 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:46:18 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:46:18 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:46:18 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:46:18 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:46:18 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:46:18 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:46:18 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:46:18 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:46:18 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:46:18 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:46:18 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:46:18 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:46:18 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:46:18 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:46:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:46:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:46:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:46:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:46:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:46:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:46:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:46:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:46:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:46:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:46:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 201 msc 0 sec -2016-05-02 19:46:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:46:20 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:46:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:46:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:46:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:20 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:20 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:20 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:46:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:46:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:46:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:46:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:46:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:46:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:46:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:46:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:46:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:46:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:46:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 175 msc 0 sec -2016-05-02 19:46:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:46:26 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:46:26 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:46:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:26 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:46:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:46:26 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:46:26 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:46:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:46:26 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:46:26 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 19:46:26 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 19:46:26 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:46:26 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:46:26 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:46:26 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:46:26 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:46:26 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:46:26 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:46:26 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:46:26 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:46:26 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:46:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:46:26 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:46:26 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:26 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:46:26 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:46:26 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:26 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:26 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:46:26 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@1d01e417, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@ace0c6a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5d9108b0, socketFactory=javax.net.DefaultSocketFactory@5cd18acd, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:46:26 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:46:27 INFO WorkspaceExplorerServiceImpl:188 - end time - 64 msc 0 sec -2016-05-02 19:46:27 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:46:27 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:46:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:46:27 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:46:27 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:246340}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1744160, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:27 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:46:27 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:27 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:27 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1856979}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2128881}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1009579, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1466945, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:27 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:27 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1542665}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1478930, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:46:27 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1856980}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856980}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG command:56 - Command execution completed -2016-05-02 19:46:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856980}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG command:56 - Command execution completed -2016-05-02 19:46:27 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856980}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG command:56 - Command execution completed -2016-05-02 19:46:27 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:46:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856980}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG command:56 - Command execution completed -2016-05-02 19:46:27 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856980}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG command:56 - Command execution completed -2016-05-02 19:46:27 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1856980}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:46:27 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:27 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:46:28 DEBUG query:56 - Query completed -2016-05-02 19:46:28 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 19:46:28 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2128881} -2016-05-02 19:46:28 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1542665} -2016-05-02 19:46:28 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:246340} -2016-05-02 19:46:28 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1856980}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:46:28 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1856980} -2016-05-02 19:46:28 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1856979} -2016-05-02 19:46:28 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:46:28 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:46:28 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:46:28 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 19:46:28 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:46:28 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:46:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:46:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:28 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:46:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:46:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:46:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:46:28 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:46:28 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:46:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:46:28 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:46:28 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 19:46:28 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:46:28 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:46:28 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:46:28 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:46:28 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:46:28 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:46:28 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:46:28 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:46:28 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:46:28 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:46:28 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:46:28 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:46:28 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:28 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:28 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:28 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@1d01e417, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@ace0c6a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5d9108b0, socketFactory=javax.net.DefaultSocketFactory@5cd18acd, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:46:28 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:46:28 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:46:28 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:246341}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1856981}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1366625, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:28 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:46:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1279353, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:28 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:28 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:28 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:28 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2128882}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1233001, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:28 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1542666}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2243813, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:28 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:46:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:46:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:46:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:46:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:46:28 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:46:28 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1856982}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856982}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG command:56 - Command execution completed -2016-05-02 19:46:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856982}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG command:56 - Command execution completed -2016-05-02 19:46:28 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856982}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG command:56 - Command execution completed -2016-05-02 19:46:28 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:46:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856982}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG command:56 - Command execution completed -2016-05-02 19:46:28 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1856982}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 DEBUG command:56 - Command execution completed -2016-05-02 19:46:28 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1856982}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:28 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:46:28 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:46:28 INFO WorkspaceExplorerServiceImpl:188 - end time - 42 msc 0 sec -2016-05-02 19:46:28 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:46:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:46:28 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:46:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:46:28 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:46:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=13.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:46:29 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:46:29 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:46:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:46:29 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:46:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:46:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:29 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:46:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:46:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:46:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:29 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:46:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:46:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:46:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:29 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:46:29 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:46:29 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:46:29 DEBUG query:56 - Query completed -2016-05-02 19:46:29 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 19:46:29 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2128882} -2016-05-02 19:46:29 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1856982}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:46:29 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1856982} -2016-05-02 19:46:29 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:46:29 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1542666} -2016-05-02 19:46:29 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:46:29 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:46:29 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 19:46:29 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:246341} -2016-05-02 19:46:29 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1856981} -2016-05-02 19:46:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:46:30 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:46:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:46:30 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:46:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:30 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:46:30 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:46:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:46:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:46:30 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:46:30 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:46:30 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:46:30 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:46:30 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:46:30 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:46:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:46:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:46:30 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:46:30 DEBUG Operation:173 - get(String) - start -2016-05-02 19:46:30 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:46:30 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:46:30 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:46:30 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:46:30 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:30 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:30 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@1d01e417, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@ace0c6a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5d9108b0, socketFactory=javax.net.DefaultSocketFactory@5cd18acd, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:46:30 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:46:30 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:246342}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1415578, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:30 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:46:30 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:30 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2128883}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1428299, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:30 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1856983}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1301836, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:30 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1542667}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1567656, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1856984}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:46:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:46:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:46:30 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG query:56 - Query completed -2016-05-02 19:46:30 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:46:30 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:46:30 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:46:30 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG update:56 - Update completed -2016-05-02 19:46:30 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1856984}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG query:56 - Query completed -2016-05-02 19:46:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:46:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:46:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:46:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:46:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:46:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:46:30 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:46:30 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:46:30 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:46:30 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:46:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:46:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:46:30 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:46:30 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:46:30 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:46:30 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:46:30 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:46:30 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:46:30 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:46:30 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:46:30 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:46:30 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:46:30 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:46:30 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:46:30 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:46:30 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:30 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:30 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@1d01e417, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@ace0c6a, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5d9108b0, socketFactory=javax.net.DefaultSocketFactory@5cd18acd, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:46:30 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:46:30 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:246343}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1253044, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:30 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:46:30 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:30 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2128884}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=880821, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1856985}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1290758, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:30 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1542668}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2173624, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:46:30 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1856986}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856986}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856986}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856986}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:46:30 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:46:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856986}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1856986}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG command:56 - Command execution completed -2016-05-02 19:46:30 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:46:30 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1856986}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG query:56 - Query completed -2016-05-02 19:46:30 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:46:30 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2128884} -2016-05-02 19:46:30 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:246343} -2016-05-02 19:46:30 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1542668} -2016-05-02 19:46:30 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1856986}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:46:30 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1856986} -2016-05-02 19:46:30 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:46:30 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1856985} -2016-05-02 19:46:30 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:46:30 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:46:30 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:46:30 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:46:30 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:46:30 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:46:30 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:46:30 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:46:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:46:40 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:46:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:46:40 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:46:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:46:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:46:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:46:40 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:46:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:46:46 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1856984}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:46:46 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1856984} -2016-05-02 19:46:46 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1542667} -2016-05-02 19:46:46 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:246342} -2016-05-02 19:46:46 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2128883} -2016-05-02 19:46:46 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1856983} -2016-05-02 19:47:08 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:47:08 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:47:08 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:47:08 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:47:08 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:47:08 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:47:08 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:47:08 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@18a5f95d -2016-05-02 19:47:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:08 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:47:08 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:47:08 DEBUG TemplateModel:83 - 2016-05-02 19:47:08, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:47:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:47:08 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:47:10 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:47:10 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:47:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:47:10 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:47:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:10 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:47:10 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:47:10 DEBUG TemplateModel:83 - 2016-05-02 19:47:10, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:47:10 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:47:10 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:47:10 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 129 ms -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:47:10 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:47:11 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:47:11 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:47:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:47:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@40bd6e8a -2016-05-02 19:47:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@219f7929 -2016-05-02 19:47:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@678d6d6d -2016-05-02 19:47:11 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@806ea2f -2016-05-02 19:47:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 118 ms -2016-05-02 19:47:11 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:47:11 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:47:11 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:47:11 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:47:11 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:47:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:47:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 29 ms -2016-05-02 19:47:11 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:47:11 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:47:11 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:47:11 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:47:11 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:47:11 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:47:11 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:11 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:47:11 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:47:11 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:47:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:11 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:47:11 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:47:11 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:47:11 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:47:11 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:47:11 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 29 -2016-05-02 19:47:11 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:47:11 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:47:11 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 23 ms -2016-05-02 19:47:11 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:47:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:11 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:47:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:11 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:47:12 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:47:12 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:47:12 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:47:12 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:47:12 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:47:12 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:12 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:47:12 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:47:12 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:47:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:47:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:47:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:47:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:47:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:47:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:12 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:47:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:47:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:13 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:47:13 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:47:13 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:13 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:47:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:13 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:47:13 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:47:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 125 msc 0 sec -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:13 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:47:13 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:47:13 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:13 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:13 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:47:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:47:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 125 msc 0 sec -2016-05-02 19:47:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:47:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:47:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:47:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 19:47:13 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:47:13 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:47:13 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:47:13 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:47:13 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:47:13 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:47:13 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:47:13 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-02 19:47:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 332 msc 0 sec -2016-05-02 19:47:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:21 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:47:21 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:47:21 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:47:21 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:47:21 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:47:22 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:47:22 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:47:22 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:47:22 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:47:22 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:47:22 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:47:22 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:47:22 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:47:22 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:47:22 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:47:22 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:47:22 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:47:22 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:47:22 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:47:22 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:47:22 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:47:22 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:47:22 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:47:22 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:47:22 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:47:22 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:47:22 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:47:22 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:47:22 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:47:22 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:47:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:47:22 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:47:22 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:47:22 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:47:22 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:47:22 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:47:22 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:47:22 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:47:22 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:47:22 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:47:22 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:47:22 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:47:22 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:47:22 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:47:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:47:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:22 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:47:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:47:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:47:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:47:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:47:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:22 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:47:22 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:47:22 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:47:22 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:47:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:47:22 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:47:22 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:47:22 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:47:22 INFO WorkspaceExplorerServiceImpl:142 - end time - 193 msc 0 sec -2016-05-02 19:47:22 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:30 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:47:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:47:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:47:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:30 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:30 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:47:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:30 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:47:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:47:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:47:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:47:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:47:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:47:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:47:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:47:31 INFO WorkspaceExplorerServiceImpl:142 - end time - 206 msc 0 sec -2016-05-02 19:47:31 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:47:36 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:47:36 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:47:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:47:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:36 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:36 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:36 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:47:36 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:47:36 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:47:36 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:47:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:47:36 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:47:36 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 19:47:36 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 19:47:36 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:47:36 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:47:36 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:47:36 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:47:36 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:47:36 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:47:36 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:47:36 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:47:36 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:47:36 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:47:36 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:47:36 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:36 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:47:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:36 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:47:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:36 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:47:36 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:36 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:36 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7ef57b6b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@30b307db, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@39c8d3d7, socketFactory=javax.net.DefaultSocketFactory@2fcbe5e4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:47:36 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:47:36 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:47:36 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:47:36 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:47:36 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:47:36 INFO WorkspaceExplorerServiceImpl:188 - end time - 72 msc 0 sec -2016-05-02 19:47:36 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:47:36 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:47:36 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:246356}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1856997}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1469164, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1507101, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:36 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:47:36 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:36 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:36 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:36 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2128895}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1292125, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:36 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1542681}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1367716, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:36 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:47:36 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1856998}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856998}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG command:56 - Command execution completed -2016-05-02 19:47:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856998}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG command:56 - Command execution completed -2016-05-02 19:47:36 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856998}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG command:56 - Command execution completed -2016-05-02 19:47:36 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:47:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856998}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG command:56 - Command execution completed -2016-05-02 19:47:36 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1856998}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:36 DEBUG command:56 - Command execution completed -2016-05-02 19:47:36 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1856998}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:47:37 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:47:37 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:47:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:37 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:37 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:47:37 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:47:37 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:47:37 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:47:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:47:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:47:37 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 19:47:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:47:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:47:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:47:37 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:47:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:47:37 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:47:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:47:37 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:47:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:47:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:47:37 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:47:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:47:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7ef57b6b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@30b307db, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@39c8d3d7, socketFactory=javax.net.DefaultSocketFactory@2fcbe5e4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:47:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:47:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:47:37 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1856999}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1356581, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:37 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:246357}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:47:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:37 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1420668, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:37 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2128897}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=899047, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:37 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:37 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:37 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1542682}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1245180, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:47:37 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:47:37 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:47:37 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1857000}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857000}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG command:56 - Command execution completed -2016-05-02 19:47:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857000}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG command:56 - Command execution completed -2016-05-02 19:47:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857000}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG command:56 - Command execution completed -2016-05-02 19:47:37 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:47:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857000}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG command:56 - Command execution completed -2016-05-02 19:47:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857000}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 DEBUG command:56 - Command execution completed -2016-05-02 19:47:37 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1857000}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:37 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:47:37 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:47:37 DEBUG query:56 - Query completed -2016-05-02 19:47:37 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 19:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2128895} -2016-05-02 19:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:246356} -2016-05-02 19:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1542681} -2016-05-02 19:47:37 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1856998}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1856998} -2016-05-02 19:47:37 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1856997} -2016-05-02 19:47:37 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:47:37 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:47:37 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:47:37 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 19:47:37 INFO WorkspaceExplorerServiceImpl:188 - end time - 155 msc 0 sec -2016-05-02 19:47:37 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:47:37 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:47:37 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:47:37 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:47:37 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:47:37 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:47:37 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:37 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:47:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:47:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:47:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:38 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:47:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:47:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:38 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:47:38 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:47:38 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:47:38 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:47:38 DEBUG query:56 - Query completed -2016-05-02 19:47:38 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 19:47:38 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2128897} -2016-05-02 19:47:38 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:246357} -2016-05-02 19:47:38 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1857000}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:47:38 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1542682} -2016-05-02 19:47:38 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1857000} -2016-05-02 19:47:38 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:47:38 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:47:38 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1856999} -2016-05-02 19:47:38 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:47:38 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 19:47:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:39 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:47:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:47:39 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:47:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:39 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:47:39 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:47:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:47:39 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:47:39 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:47:39 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:47:39 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:47:39 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:47:39 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:47:39 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:47:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:47:39 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:47:39 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:47:39 DEBUG Operation:173 - get(String) - start -2016-05-02 19:47:39 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:47:39 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:47:39 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:47:39 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:47:39 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:39 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:39 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7ef57b6b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@30b307db, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@39c8d3d7, socketFactory=javax.net.DefaultSocketFactory@2fcbe5e4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:47:39 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:47:39 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:246358}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1339977, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:39 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:47:39 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:39 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2128899}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1857001}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=939443, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1468631, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:39 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1542683}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1251260, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1857002}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:47:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:47:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:47:39 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG query:56 - Query completed -2016-05-02 19:47:39 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:47:39 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:47:39 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:47:39 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG update:56 - Update completed -2016-05-02 19:47:39 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1857002}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG query:56 - Query completed -2016-05-02 19:47:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:39 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:47:39 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:47:39 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:47:39 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:47:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:47:39 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:47:39 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:47:39 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:47:39 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:47:39 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:47:39 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:47:39 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:47:39 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:47:39 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:47:39 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:47:39 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:47:39 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:47:39 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:47:39 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:47:39 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:39 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:39 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7ef57b6b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@30b307db, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@39c8d3d7, socketFactory=javax.net.DefaultSocketFactory@2fcbe5e4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:47:39 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:47:39 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1857003}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:246359}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1333014, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:39 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:47:39 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1537267, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:39 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:39 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2128900}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=854987, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1542684}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2748733, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}] -2016-05-02 19:47:39 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1857004}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857004}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857004}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857004}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:47:39 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:47:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857004}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857004}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG command:56 - Command execution completed -2016-05-02 19:47:39 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:47:39 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1857004}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG query:56 - Query completed -2016-05-02 19:47:39 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:47:39 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2128900} -2016-05-02 19:47:39 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:246359} -2016-05-02 19:47:39 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1542684} -2016-05-02 19:47:39 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1857004}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:47:39 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1857004} -2016-05-02 19:47:39 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:47:39 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1857003} -2016-05-02 19:47:39 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:47:39 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:47:39 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:47:39 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:47:39 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:47:39 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:47:39 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:47:39 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:47:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:47:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:47:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:47:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:47:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-02 19:47:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:47:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:47:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:47:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:47:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:47:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:47:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:47:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=14.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:47:59 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2128899} -2016-05-02 19:47:59 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:246358} -2016-05-02 19:47:59 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1542683} -2016-05-02 19:47:59 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1857002}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:47:59 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1857002} -2016-05-02 19:47:59 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1857001} -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:47:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:47:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:59 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:47:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:47:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:47:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:47:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:47:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:47:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:47:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:00 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:48:00 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:48:00 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:48:00 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:48:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:48:00 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:48:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:48:00 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:48:00 INFO WorkspaceExplorerServiceImpl:142 - end time - 158 msc 0 sec -2016-05-02 19:48:00 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:48:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:48:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:02 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:02 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:48:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:48:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:02 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:48:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:02 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:48:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:48:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:02 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:48:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 156 msc 0 sec -2016-05-02 19:48:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:03 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:48:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:48:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 169 msc 0 sec -2016-05-02 19:48:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:48:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:48:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:48:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:48:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:05 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:48:05 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:48:05 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:48:05 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:48:05 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:48:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:48:05 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:48:05 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:48:05 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:48:05 INFO WorkspaceExplorerServiceImpl:142 - end time - 173 msc 0 sec -2016-05-02 19:48:05 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:48:11 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:48:11 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:11 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:11 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:48:11 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:48:11 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:48:11 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:48:11 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:48:11 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:48:11 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 19:48:11 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 19:48:11 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:48:11 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:48:11 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:48:11 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:48:11 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:48:11 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:48:11 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:48:11 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:48:11 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:48:11 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:48:11 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:48:11 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:11 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:11 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:11 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7ef57b6b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@30b307db, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@39c8d3d7, socketFactory=javax.net.DefaultSocketFactory@2fcbe5e4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:48:11 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:48:11 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:48:11 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:246366}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1130251, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:11 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:48:11 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:11 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:11 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1857010}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1177110, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:11 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:11 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2128906}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1010428, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:11 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1542691}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1358631, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:11 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:11 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1857011}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1857011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG command:56 - Command execution completed -2016-05-02 19:48:11 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1857011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG command:56 - Command execution completed -2016-05-02 19:48:11 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1857011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:48:11 DEBUG command:56 - Command execution completed -2016-05-02 19:48:11 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:48:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:48:11 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:11 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:11 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:11 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:11 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:11 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:11 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:48:11 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:48:11 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1857011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG command:56 - Command execution completed -2016-05-02 19:48:11 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1857011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 DEBUG command:56 - Command execution completed -2016-05-02 19:48:11 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1857011}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:11 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:48:11 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:48:11 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:48:11 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:48:11 INFO WorkspaceExplorerServiceImpl:188 - end time - 52 msc 0 sec -2016-05-02 19:48:11 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:48:11 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:48:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:48:12 DEBUG query:56 - Query completed -2016-05-02 19:48:12 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 19:48:12 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2128906} -2016-05-02 19:48:12 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:246366} -2016-05-02 19:48:12 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1857011}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:48:12 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1857011} -2016-05-02 19:48:12 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1542691} -2016-05-02 19:48:12 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:48:12 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1857010} -2016-05-02 19:48:12 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:48:12 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:48:12 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 19:48:12 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:48:12 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:12 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:12 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:48:12 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:48:12 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:48:12 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:48:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:48:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:48:12 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 19:48:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:48:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:48:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:48:12 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:48:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:48:12 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:48:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:48:12 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:48:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:48:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:48:12 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:48:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:48:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7ef57b6b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@30b307db, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@39c8d3d7, socketFactory=javax.net.DefaultSocketFactory@2fcbe5e4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:48:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:48:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:48:12 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:246368}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1581665, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:48:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:12 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1857012}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1471392, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:12 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2128909}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1165729, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:12 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1542694}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1217146, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:12 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1857013}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1857013}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG command:56 - Command execution completed -2016-05-02 19:48:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1857013}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG command:56 - Command execution completed -2016-05-02 19:48:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1857013}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:48:12 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:48:12 DEBUG command:56 - Command execution completed -2016-05-02 19:48:12 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:48:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1857013}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG command:56 - Command execution completed -2016-05-02 19:48:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1857013}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 DEBUG command:56 - Command execution completed -2016-05-02 19:48:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1857013}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:12 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:48:12 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:48:12 INFO WorkspaceExplorerServiceImpl:188 - end time - 44 msc 0 sec -2016-05-02 19:48:12 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:48:12 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:48:12 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:48:12 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:48:12 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:48:13 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:48:13 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:13 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:13 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:13 DEBUG ASLSession:458 - Getting security token: null in thread 29 -2016-05-02 19:48:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 29 -2016-05-02 19:48:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:13 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:48:13 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:48:13 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:48:13 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:48:13 DEBUG query:56 - Query completed -2016-05-02 19:48:13 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 19:48:13 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2128909} -2016-05-02 19:48:13 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:246368} -2016-05-02 19:48:13 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1542694} -2016-05-02 19:48:13 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1857013}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:48:13 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1857013} -2016-05-02 19:48:13 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:48:13 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:48:13 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:48:13 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 19:48:13 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1857012} -2016-05-02 19:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:48:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:48:14 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:48:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:14 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:48:14 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:48:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:48:14 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:48:14 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:48:14 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:48:14 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:48:14 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:48:14 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:48:14 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:48:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:48:14 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:48:14 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:48:14 DEBUG Operation:173 - get(String) - start -2016-05-02 19:48:14 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:48:14 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:48:14 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:48:14 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:48:14 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:14 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:14 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7ef57b6b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@30b307db, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@39c8d3d7, socketFactory=javax.net.DefaultSocketFactory@2fcbe5e4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:48:14 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:48:14 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1857014}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:246369}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1271720, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:14 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:48:14 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:14 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1168527, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:14 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2128910}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=981981, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1542695}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2506998, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1857015}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:48:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:48:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:48:14 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG query:56 - Query completed -2016-05-02 19:48:14 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:48:14 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:48:14 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:48:14 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG update:56 - Update completed -2016-05-02 19:48:14 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1857015}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG query:56 - Query completed -2016-05-02 19:48:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:48:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:48:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:48:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:48:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:48:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:48:14 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:48:14 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:48:14 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:48:14 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:48:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:48:14 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:48:14 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:48:14 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:48:14 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:48:14 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:48:14 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:48:14 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:48:14 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:48:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:48:14 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:48:14 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:48:14 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:48:14 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:48:14 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:48:14 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:14 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:14 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7ef57b6b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@30b307db, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@39c8d3d7, socketFactory=javax.net.DefaultSocketFactory@2fcbe5e4, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:48:14 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:48:14 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:246370}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1380007, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:14 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:48:14 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:14 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1857016}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1310587, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:14 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2128911}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1058112, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1542696}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1688922, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:48:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:48:14 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1857017}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1857017}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1857017}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1857017}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:48:14 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:48:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1857017}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1857017}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG command:56 - Command execution completed -2016-05-02 19:48:14 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:48:14 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1857017}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:14 DEBUG query:56 - Query completed -2016-05-02 19:48:14 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:48:14 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2128911} -2016-05-02 19:48:14 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:246370} -2016-05-02 19:48:14 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1857017}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:48:14 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1542696} -2016-05-02 19:48:14 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1857017} -2016-05-02 19:48:14 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:48:14 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1857016} -2016-05-02 19:48:14 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:48:14 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:48:14 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:48:14 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:48:14 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:48:14 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:48:14 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:48:14 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:48:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 19:48:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 19:48:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}] -2016-05-02 19:48:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 19:48:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 19:48:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 19:48:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-02 19:48:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:48:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:48:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:48:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-02 19:48:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:48:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:48:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:48:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:48:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:48:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:48:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:48:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:48:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:48:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:48:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:49:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:49:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:49:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:49:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:49:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:49:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-02 19:49:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:49:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:49:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:49:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:49:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:49:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:49:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:49:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:49:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:49:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:49:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:49:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:49:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:49:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:49:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:49:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:49:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:49:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:49:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:49:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:49:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:49:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:49:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:49:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:49:53 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:49:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:49:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:49:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:49:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:49:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:49:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:49:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:49:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:50:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:50:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:50:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:50:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:50:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:50:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:50:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:50:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:50:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:50:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:50:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:50:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:50:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:50:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-02 19:50:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:50:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:50:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:50:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:50:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:50:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:50:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:50:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:50:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:50:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:50:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:50:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:50:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:50:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:50:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:50:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:50:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:50:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:50:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:50:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:50:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:50:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:50:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:50:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:50:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:50:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:50:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:50:48 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:50:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:50:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:50:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:50:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:50:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:50:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:50:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:50:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:51:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:51:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:51:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:51:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:51:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:51:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:51:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:51:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:51:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:51:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:51:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:51:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:51:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:51:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-02 19:51:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:51:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:51:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:51:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:51:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:51:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:51:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:51:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:51:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:51:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:51:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:51:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:51:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:51:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:51:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:51:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:51:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:52:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:52:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:52:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:52:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:52:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:52:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-02 19:52:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:52:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:52:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:52:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:52:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:52:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:52:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:52:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:52:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:52:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:52:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:52:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:52:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:52:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:52:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:52:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:52:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:52:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:52:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:52:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:52:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:52:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:52:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:52:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:52:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:52:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:52:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:52:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:52:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:53:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:53:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:53:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:53:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:53:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:53:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:53:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:53:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-02 19:53:33 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-02 19:53:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:53:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:53:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:53:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:53:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:53:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:53:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:53:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:53:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:53:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:53:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:53:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:53:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:53:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:53:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:53:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:53:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:53:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:53:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:53:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:53:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:53:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:54:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:54:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:54:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:54:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:54:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:54:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-02 19:54:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:54:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-02 19:54:36 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-02 19:54:36 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-02 19:54:36 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-02 19:54:36 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:54:36 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:54:36 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:36 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:54:36 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@27caef75 -2016-05-02 19:54:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:36 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:54:36 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:54:36 DEBUG TemplateModel:83 - 2016-05-02 19:54:36, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:54:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:54:36 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-02 19:54:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-02 19:54:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-02 19:54:38 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-02 19:54:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:38 INFO ASLSession:352 - Logging the entrance -2016-05-02 19:54:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-02 19:54:38 DEBUG TemplateModel:83 - 2016-05-02 19:54:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-02 19:54:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:54:38 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:54:38 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 123 ms -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-02 19:54:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-02 19:54:39 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-02 19:54:39 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:54:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-02 19:54:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@2d5d2694 -2016-05-02 19:54:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@46d5a541 -2016-05-02 19:54:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@7bb11c4c -2016-05-02 19:54:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@766fb467 -2016-05-02 19:54:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 107 ms -2016-05-02 19:54:39 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-02 19:54:39 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-02 19:54:39 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-02 19:54:39 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-02 19:54:39 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-02 19:54:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:54:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-02 19:54:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 20 ms -2016-05-02 19:54:39 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-02 19:54:39 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:54:39 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-02 19:54:39 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:54:39 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:54:39 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:54:39 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:54:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:54:39 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-02 19:54:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:39 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-02 19:54:39 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-02 19:54:39 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-02 19:54:39 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-02 19:54:39 DEBUG JCRRepository:271 - Initialize repository -2016-05-02 19:54:39 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-02 19:54:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-02 19:54:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:54:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-02 19:54:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-02 19:54:39 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-02 19:54:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:39 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-02 19:54:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:39 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-02 19:54:40 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:54:40 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-02 19:54:40 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:54:40 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:54:40 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-02 19:54:40 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-02 19:54:40 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-02 19:54:40 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:40 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:54:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-02 19:54:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:40 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:54:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-02 19:54:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:40 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:54:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-02 19:54:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:40 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-02 19:54:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-02 19:54:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:41 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-02 19:54:41 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-02 19:54:41 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:41 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-02 19:54:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:41 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:41 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-02 19:54:41 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-02 19:54:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 132 msc 0 sec -2016-05-02 19:54:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:41 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:41 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-02 19:54:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:41 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:54:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:54:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 129 msc 0 sec -2016-05-02 19:54:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:54:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:54:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-02 19:54:41 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-02 19:54:41 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-02 19:54:41 INFO ISClientConnector:82 - found only one RR, take it -2016-05-02 19:54:41 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-02 19:54:41 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:54:41 DEBUG StorageClient:517 - set scope: /gcube -2016-05-02 19:54:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:54:41 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-02 19:54:41 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-02 19:54:42 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-02 19:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-02 19:54:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:42 INFO WorkspaceExplorerServiceImpl:188 - end time - 392 msc 0 sec -2016-05-02 19:54:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:54:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:54:51 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-02 19:54:51 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:54:51 INFO StatWPSClientSession:84 - CONNECT -2016-05-02 19:54:52 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-02 19:54:52 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-02 19:54:52 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-02 19:54:52 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-02 19:54:52 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-02 19:54:52 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-02 19:54:52 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-02 19:54:52 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-02 19:54:52 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-02 19:54:52 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-02 19:54:52 DEBUG WPS2SM:204 - Schema: null -2016-05-02 19:54:52 DEBUG WPS2SM:205 - Encoding: null -2016-05-02 19:54:52 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:54:52 DEBUG WPS2SM:227 - Machter find: true -2016-05-02 19:54:52 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-02 19:54:52 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-02 19:54:52 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-02 19:54:52 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-02 19:54:52 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-02 19:54:52 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-02 19:54:52 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-02 19:54:52 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:54:52 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-02 19:54:52 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-02 19:54:52 DEBUG WPS2SM:92 - WPS type: -2016-05-02 19:54:52 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-02 19:54:52 DEBUG WPS2SM:100 - Guessed default value: -2016-05-02 19:54:52 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-02 19:54:52 DEBUG WPS2SM:149 - Machter find: true -2016-05-02 19:54:52 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-02 19:54:52 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-02 19:54:52 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-02 19:54:52 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-02 19:54:52 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-02 19:54:52 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-02 19:54:52 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-02 19:54:52 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-02 19:54:52 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-02 19:54:52 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:52 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:52 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:54:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:54:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:52 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:54:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:52 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:54:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:52 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:52 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:52 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:54:52 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:54:52 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:54:52 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:54:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:52 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:54:52 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:52 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:54:52 INFO WorkspaceExplorerServiceImpl:142 - end time - 191 msc 0 sec -2016-05-02 19:54:52 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:54 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:54 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:54 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:55 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:55 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:54:55 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:54:55 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:54:55 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:54:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:55 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:54:55 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:55 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:54:55 INFO WorkspaceExplorerServiceImpl:142 - end time - 174 msc 0 sec -2016-05-02 19:54:55 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:57 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:57 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:54:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:57 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:54:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:54:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:57 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:54:57 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:54:57 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:54:57 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:54:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:57 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:54:57 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:57 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:54:57 INFO WorkspaceExplorerServiceImpl:142 - end time - 156 msc 0 sec -2016-05-02 19:54:57 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:54:58 INFO WorkspaceExplorerServiceImpl:142 - end time - 182 msc 0 sec -2016-05-02 19:54:58 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:58 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:54:58 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-02 19:54:58 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:54:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 166 msc 0 sec -2016-05-02 19:54:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:54:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:54:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 157 msc 0 sec -2016-05-02 19:54:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:54:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:54:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:54:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:54:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:54:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:54:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:54:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:54:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:55:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:55:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:55:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:55:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:55:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:55:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:55:00 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:55:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-02 19:55:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:55:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-02 19:55:00 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:55:00 INFO WorkspaceExplorerServiceImpl:142 - end time - 176 msc 0 sec -2016-05-02 19:55:00 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-02 19:55:00 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-02 19:55:00 INFO WorkspaceExplorerServiceImpl:142 - end time - 1148 msc 1 sec -2016-05-02 19:55:00 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-02 19:55:05 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:55:05 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:55:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:55:05 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:55:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:55:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:05 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:55:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:55:05 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:55:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:55:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:05 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:55:05 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:55:05 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:55:05 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:55:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:55:05 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:55:05 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-02 19:55:05 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-02 19:55:05 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:55:05 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:55:05 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:55:05 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:55:05 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:55:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:55:05 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:55:05 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:55:05 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:55:05 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:55:05 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:55:05 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:55:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:55:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:55:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:55:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:55:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:55:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:06 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:55:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:06 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:06 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:06 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:55:06 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fea66d3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6c6797ce, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@51f8cfc, socketFactory=javax.net.DefaultSocketFactory@5a60f704, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:55:06 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:55:06 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:55:06 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:55:06 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-02 19:55:06 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:55:06 INFO WorkspaceExplorerServiceImpl:188 - end time - 66 msc 0 sec -2016-05-02 19:55:06 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:55:06 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:55:06 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:246439}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1406579, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:06 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:55:06 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:06 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1857088}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1494783, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:06 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:06 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2128978}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1105436, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:06 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1542764}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1172461, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:55:06 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1857089}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1857089}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG command:56 - Command execution completed -2016-05-02 19:55:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1857089}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG command:56 - Command execution completed -2016-05-02 19:55:06 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1857089}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG command:56 - Command execution completed -2016-05-02 19:55:06 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:55:06 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1857089}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG command:56 - Command execution completed -2016-05-02 19:55:06 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1857089}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG command:56 - Command execution completed -2016-05-02 19:55:06 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1857089}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-02 19:55:06 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:55:06 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:55:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:55:06 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:55:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:55:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:06 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:55:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:55:06 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:55:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:55:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:06 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:55:06 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:55:07 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:07 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:55:07 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-02 19:55:07 DEBUG ServiceEngine:306 - get() - start -2016-05-02 19:55:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:55:07 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:55:07 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-02 19:55:07 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-02 19:55:07 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:55:07 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:55:07 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-02 19:55:07 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:55:07 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:55:07 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:55:07 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:55:07 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:55:07 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:55:07 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:55:07 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:55:07 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:07 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:07 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:07 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fea66d3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6c6797ce, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@51f8cfc, socketFactory=javax.net.DefaultSocketFactory@5a60f704, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:55:07 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:55:07 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:55:07 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:55:07 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-02 19:55:07 DEBUG query:56 - Query completed -2016-05-02 19:55:07 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-02 19:55:07 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2128978} -2016-05-02 19:55:07 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:246439} -2016-05-02 19:55:07 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1542764} -2016-05-02 19:55:07 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1857089}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:55:07 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1857089} -2016-05-02 19:55:07 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1857088} -2016-05-02 19:55:07 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:55:07 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:55:07 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-02 19:55:07 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-02 19:55:07 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:246440}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1124422, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:07 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:55:07 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:07 INFO WorkspaceExplorerServiceImpl:188 - end time - 45 msc 0 sec -2016-05-02 19:55:07 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:07 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1857090}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1349122, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:07 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:07 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2128979}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1164309, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:07 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-02 19:55:07 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:55:07 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1542765}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1469146, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:55:07 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-02 19:55:07 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1857091}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857091}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG command:56 - Command execution completed -2016-05-02 19:55:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857091}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-02 19:55:07 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-02 19:55:07 DEBUG command:56 - Command execution completed -2016-05-02 19:55:07 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857091}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG command:56 - Command execution completed -2016-05-02 19:55:07 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:55:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857091}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG command:56 - Command execution completed -2016-05-02 19:55:07 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1857091}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG command:56 - Command execution completed -2016-05-02 19:55:07 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1857091}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:55:07 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:07 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-02 19:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:07 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:55:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-02 19:55:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-02 19:55:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:07 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:55:07 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:55:07 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:55:07 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:07 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:55:07 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-02 19:55:08 DEBUG query:56 - Query completed -2016-05-02 19:55:08 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-02 19:55:08 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2128979} -2016-05-02 19:55:08 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:246440} -2016-05-02 19:55:08 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1542765} -2016-05-02 19:55:08 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1857091}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:55:08 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1857091} -2016-05-02 19:55:08 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1857090} -2016-05-02 19:55:08 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:55:08 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:55:08 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-02 19:55:08 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-02 19:55:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-02 19:55:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-02 19:55:08 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-02 19:55:08 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-02 19:55:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:08 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:55:08 DEBUG ServiceEngine:193 - get() - start -2016-05-02 19:55:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:55:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:55:08 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:55:08 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:55:08 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:55:08 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-02 19:55:08 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-02 19:55:08 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:55:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:55:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:55:08 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:55:08 DEBUG Operation:173 - get(String) - start -2016-05-02 19:55:08 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:55:08 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:55:08 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:55:08 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:55:08 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:08 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:08 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fea66d3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6c6797ce, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@51f8cfc, socketFactory=javax.net.DefaultSocketFactory@5a60f704, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:55:08 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:55:08 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1857092}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1346998, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:08 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:55:08 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:08 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:08 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:246441}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1349067, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2128981}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1020222, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1542766}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1425216, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1857093}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:55:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:55:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:55:08 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG query:56 - Query completed -2016-05-02 19:55:08 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:55:08 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-02 19:55:08 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-02 19:55:08 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG update:56 - Update completed -2016-05-02 19:55:08 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1857093}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG query:56 - Query completed -2016-05-02 19:55:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-02 19:55:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-02 19:55:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-02 19:55:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-02 19:55:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-02 19:55:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-02 19:55:08 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-02 19:55:08 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-02 19:55:08 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-02 19:55:08 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-02 19:55:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:55:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:55:08 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-02 19:55:08 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-02 19:55:08 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-02 19:55:08 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-02 19:55:08 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-02 19:55:08 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-02 19:55:08 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-02 19:55:08 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-02 19:55:08 DEBUG BucketCoding:42 - coding name done -2016-05-02 19:55:08 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-02 19:55:08 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-02 19:55:08 DEBUG MongoIO:77 - open mongo connection -2016-05-02 19:55:08 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-02 19:55:08 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:08 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:08 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@fea66d3, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6c6797ce, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@51f8cfc, socketFactory=javax.net.DefaultSocketFactory@5a60f704, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-02 19:55:08 INFO MongoIO:106 - new mongo connection pool opened -2016-05-02 19:55:08 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1857094}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:246442}] to mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1205408, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:08 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-02 19:55:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1212720, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:08 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:08 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-02 19:55:08 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2128983}] to mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=808798, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1542767}] to mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1480398, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-02 19:55:08 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-02 19:55:08 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1857095}] to mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857095}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857095}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857095}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:55:08 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:55:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857095}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1857095}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG command:56 - Command execution completed -2016-05-02 19:55:08 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:55:08 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1857095}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-02 19:55:08 DEBUG query:56 - Query completed -2016-05-02 19:55:08 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-02 19:55:08 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2128983} -2016-05-02 19:55:08 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1857095}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:55:08 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:246442} -2016-05-02 19:55:08 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1857095} -2016-05-02 19:55:08 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1542767} -2016-05-02 19:55:09 INFO MongoIO:508 - Mongo has been closed -2016-05-02 19:55:09 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1857094} -2016-05-02 19:55:09 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-02 19:55:09 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:55:09 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:55:09 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:55:09 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-02 19:55:09 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-02 19:55:09 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:55:09 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-02 19:55:14 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2128981} -2016-05-02 19:55:14 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1857093}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-02 19:55:14 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1542766} -2016-05-02 19:55:14 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:246441} -2016-05-02 19:55:14 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1857093} -2016-05-02 19:55:14 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1857092} -2016-05-02 19:55:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-02 19:55:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-02 19:56:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-02 19:56:27 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-02 19:57:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-02 19:57:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:35:36 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 09:35:36 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 09:35:36 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 09:35:36 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:35:36 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:35:36 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:35:36 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:35:36 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@1b539270 -2016-05-03 09:35:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:35:36 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:35:36 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:35:36 DEBUG TemplateModel:83 - 2016-05-03 09:35:36, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:35:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:35:36 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 09:35:38 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:35:38 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:35:38 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:35:38 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:35:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:38 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:35:38 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:35:38 DEBUG TemplateModel:83 - 2016-05-03 09:35:38, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:35:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:35:38 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:35:38 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 116 ms -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 09:35:38 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 09:35:38 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 09:35:39 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:35:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:35:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@67e0613 -2016-05-03 09:35:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@2b3d9b0c -2016-05-03 09:35:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@80e8124 -2016-05-03 09:35:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@35f3f5fc -2016-05-03 09:35:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 327 ms -2016-05-03 09:35:39 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 09:35:39 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:35:39 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:35:39 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:35:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:35:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:35:39 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 09:35:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:39 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 09:35:39 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 09:35:39 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 09:35:39 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 09:35:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:35:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 09:35:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-03 09:35:40 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 09:35:40 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:35:40 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 09:35:40 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:35:40 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 09:35:40 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 09:35:40 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 09:35:40 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 09:35:40 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 09:35:40 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 09:35:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 31 -2016-05-03 09:35:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:35:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 09:35:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 23 ms -2016-05-03 09:35:40 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 09:35:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:40 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 09:35:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:40 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 09:35:40 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:35:40 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:35:40 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 09:35:41 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:35:41 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:35:41 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 09:35:41 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 09:35:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:41 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:35:41 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 09:35:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:41 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:35:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 09:35:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:35:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 09:35:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:35:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 09:35:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:41 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:35:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 09:35:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:42 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:35:42 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:35:42 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:35:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:35:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:42 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 09:35:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:43 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 09:35:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:43 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 09:35:43 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 09:35:43 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 09:35:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 215 msc 0 sec -2016-05-03 09:35:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:43 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 09:35:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 125 msc 0 sec -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:35:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:35:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:35:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:35:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 09:35:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 09:35:43 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 09:35:43 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 09:35:43 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 09:35:43 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:35:43 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:35:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:35:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:35:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 17 ms -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:35:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 383 msc 0 sec -2016-05-03 09:35:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:46 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:35:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:35:46 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 09:35:46 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:35:46 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:35:46 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 09:35:46 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 09:35:46 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 09:35:46 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 09:35:46 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 09:35:46 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 09:35:46 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:35:46 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 09:35:46 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 09:35:46 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 09:35:46 DEBUG WPS2SM:204 - Schema: null -2016-05-03 09:35:46 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 09:35:46 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:35:46 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 09:35:46 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 09:35:46 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 09:35:46 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 09:35:46 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 09:35:46 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 09:35:46 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 09:35:46 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 09:35:46 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:35:46 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 09:35:46 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 09:35:46 DEBUG WPS2SM:92 - WPS type: -2016-05-03 09:35:46 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 09:35:46 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 09:35:46 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:35:46 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 09:35:46 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 09:35:46 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 09:35:46 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 09:35:46 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 09:35:46 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 09:35:46 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 09:35:46 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 09:35:46 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:35:46 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 09:35:46 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:47 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:35:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:35:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:35:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:35:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:47 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:35:47 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:35:47 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:35:47 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:35:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:35:47 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:35:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:35:47 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:35:47 INFO WorkspaceExplorerServiceImpl:142 - end time - 210 msc 0 sec -2016-05-03 09:35:47 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:49 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:35:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:35:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:35:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:35:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:49 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:35:49 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:35:49 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:35:49 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:35:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:35:49 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:35:49 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:35:49 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:35:49 INFO WorkspaceExplorerServiceImpl:142 - end time - 185 msc 0 sec -2016-05-03 09:35:49 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:50 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:50 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:50 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:35:50 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:35:50 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:35:50 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:35:50 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:35:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:35:50 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:35:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:35:50 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:35:50 INFO WorkspaceExplorerServiceImpl:142 - end time - 192 msc 0 sec -2016-05-03 09:35:50 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:35:56 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:35:56 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:35:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:56 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:35:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:35:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:56 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:35:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:35:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:35:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:35:56 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:35:56 DEBUG ServiceEngine:306 - get() - start -2016-05-03 09:35:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:35:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:35:56 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 09:35:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 09:35:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:35:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:35:56 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 09:35:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:35:56 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 09:35:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:35:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:35:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:35:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:35:56 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:35:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:35:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:56 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:35:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:35:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:35:56 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:35:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:35:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:56 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:35:57 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:35:57 INFO WorkspaceExplorerServiceImpl:188 - end time - 44 msc 0 sec -2016-05-03 09:35:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:35:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 09:35:57 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:57 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ec53f8b9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@51ac3ab0, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@24122b4, socketFactory=javax.net.DefaultSocketFactory@24d5894, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:35:57 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:35:57 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:35:57 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1865290}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:254637}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1280804, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1416592, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:57 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:35:57 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:57 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:57 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:57 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2137179}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1087530, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:57 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1550963}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1402602, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:35:57 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1865291}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865291}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG command:56 - Command execution completed -2016-05-03 09:35:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865291}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG command:56 - Command execution completed -2016-05-03 09:35:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865291}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG command:56 - Command execution completed -2016-05-03 09:35:57 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:35:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865291}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG command:56 - Command execution completed -2016-05-03 09:35:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865291}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG command:56 - Command execution completed -2016-05-03 09:35:57 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1865291}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:35:57 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:35:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:57 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:35:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:35:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:57 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:35:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:35:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:35:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:35:57 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:35:57 DEBUG ServiceEngine:306 - get() - start -2016-05-03 09:35:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:35:57 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:35:57 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 09:35:57 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 09:35:57 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:35:57 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:35:57 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 09:35:57 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:35:57 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:35:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:35:57 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:35:57 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:35:57 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:35:57 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:35:57 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:35:57 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:57 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:57 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ec53f8b9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@51ac3ab0, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@24122b4, socketFactory=javax.net.DefaultSocketFactory@24d5894, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:35:57 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:35:57 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:35:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:35:57 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:35:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:35:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:35:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:57 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:35:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:35:57 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:35:57 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:254638}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2594624, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:57 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:35:57 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:57 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:57 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:35:57 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2137180}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:35:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1037449, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:57 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1865292}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1207633, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:57 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:57 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1550964}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:35:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1324458, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 09:35:57 INFO WorkspaceExplorerServiceImpl:188 - end time - 42 msc 0 sec -2016-05-03 09:35:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:35:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:35:58 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:35:58 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1865293}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865293}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:58 DEBUG command:56 - Command execution completed -2016-05-03 09:35:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865293}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:58 DEBUG command:56 - Command execution completed -2016-05-03 09:35:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865293}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:35:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 09:35:58 DEBUG command:56 - Command execution completed -2016-05-03 09:35:58 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:35:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865293}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:58 DEBUG command:56 - Command execution completed -2016-05-03 09:35:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865293}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:58 DEBUG command:56 - Command execution completed -2016-05-03 09:35:58 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1865293}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:58 DEBUG query:56 - Query completed -2016-05-03 09:35:58 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:254637} -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2137179} -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1550963} -2016-05-03 09:35:58 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1865291}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1865291} -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1865290} -2016-05-03 09:35:58 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:35:58 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:35:58 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:35:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 09:35:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 09:35:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:35:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 09:35:58 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:35:58 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:35:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:35:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:35:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:58 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:35:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:35:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:35:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:35:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:58 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:35:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:35:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:35:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:35:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:35:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:35:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 09:35:58 DEBUG query:56 - Query completed -2016-05-03 09:35:58 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2137180} -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:254638} -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1550964} -2016-05-03 09:35:58 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1865293}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1865293} -2016-05-03 09:35:58 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:35:58 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1865292} -2016-05-03 09:35:58 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:35:58 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:35:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 09:35:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:35:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:35:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:35:59 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 09:35:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:35:59 DEBUG ServiceEngine:193 - get() - start -2016-05-03 09:35:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:35:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:35:59 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 09:35:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:35:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:35:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:35:59 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 09:35:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:35:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:35:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:35:59 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:35:59 DEBUG Operation:173 - get(String) - start -2016-05-03 09:35:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:35:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:35:59 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:35:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:35:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ec53f8b9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@51ac3ab0, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@24122b4, socketFactory=javax.net.DefaultSocketFactory@24d5894, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:35:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:35:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1865294}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:254639}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1417629, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:35:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1483872, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2137181}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1046525, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1550965}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1422340, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1865295}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 09:35:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:35:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:35:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG query:56 - Query completed -2016-05-03 09:35:59 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 09:35:59 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 09:35:59 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 09:35:59 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG update:56 - Update completed -2016-05-03 09:35:59 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1865295}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG query:56 - Query completed -2016-05-03 09:35:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:35:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:35:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:35:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:35:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:35:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:35:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:35:59 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 09:35:59 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 09:35:59 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 09:35:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:35:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:35:59 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 09:35:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:35:59 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 09:35:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:35:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 09:35:59 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 09:35:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:35:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:35:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:35:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:35:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:35:59 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:35:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:35:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@ec53f8b9, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@51ac3ab0, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@24122b4, socketFactory=javax.net.DefaultSocketFactory@24d5894, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:35:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:35:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:254640}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1082057, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:35:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2137182}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1865296}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=881203, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1237175, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1550966}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1135153, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:35:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 09:35:59 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1865297}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865297}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865297}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865297}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:35:59 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:35:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865297}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865297}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG command:56 - Command execution completed -2016-05-03 09:35:59 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:35:59 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1865297}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:35:59 DEBUG query:56 - Query completed -2016-05-03 09:35:59 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 09:35:59 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:254640} -2016-05-03 09:35:59 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1550966} -2016-05-03 09:35:59 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1865297}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:35:59 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1865297} -2016-05-03 09:35:59 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2137182} -2016-05-03 09:35:59 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:35:59 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1865296} -2016-05-03 09:35:59 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:35:59 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:35:59 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:35:59 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:35:59 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 09:35:59 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:35:59 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 09:35:59 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 09:36:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:36:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:36:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:36:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:36:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:36:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:36:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:36:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:36:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:36:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:36:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:36:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:36:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:36:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:36:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:36:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:36:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:36:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:36:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:36:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:36:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:36:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:36:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:36:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:36:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:36:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:36:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:36:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:36:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:36:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:36:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:36:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:36:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:36:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:36:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:36:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:36:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:36:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:36:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:37:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:37:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:37:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:37:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:37:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:37:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:37:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:37:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:37:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:37:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:37:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:37:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:37:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:37:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:37:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:37:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:37:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:37:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:37:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:37:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:37:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:37:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:37:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:37:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:37:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:37:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:37:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:38:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:38:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:38:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:38:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:38:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:38:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:38:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:38:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:38:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:38:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:38:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:38:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:38:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:38:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:38:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:38:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:38:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:38:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:38:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:38:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:38:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:38:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:38:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:38:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:38:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:38:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:38:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:38:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:38:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:38:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:38:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:38:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:39:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:39:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:39:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:39:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:39:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:39:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:39:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:39:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:39:16 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:39:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:39:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:39:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:39:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:39:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:39:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:39:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:39:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:39:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:39:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:39:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:39:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:39:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:39:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:39:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:39:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:39:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:39:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:39:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:39:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:39:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:39:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:39:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:39:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:40:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:40:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:40:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:40:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:11 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:40:11 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:40:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:40:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:40:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:40:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:40:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:40:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:40:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:40:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:40:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:40:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:40:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:40:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:40:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:40:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:40:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:40:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:40:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:40:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:40:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:40:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:40:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:40:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:40:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:40:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:40:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:40:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:40:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:40:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:40:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:40:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:40:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:40:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:40:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:40:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:41:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:41:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:41:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:41:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:41:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:41:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:41:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:41:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:41:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:41:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:41:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:41:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:41:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:41:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:41:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:41:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:41:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:41:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:41:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:41:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:41:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:41:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:41:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:41:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:41:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:41:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:41:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:41:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:41:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:41:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:41:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:41:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:41:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:41:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:41:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:42:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:42:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:42:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:42:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:42:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:42:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:42:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:42:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:42:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:42:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:42:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:42:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:42:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:42:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:42:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:42:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:42:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:42:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:42:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:42:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:42:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:42:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:42:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:42:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:42:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:42:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-03 09:42:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:42:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-03 09:42:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:42:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-03 09:42:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:42:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}] -2016-05-03 09:42:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:42:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-03 09:42:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:42:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-03 09:42:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:42:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:42:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}] -2016-05-03 09:42:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:42:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:42:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=42.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:42:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:42:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:42:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:42:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=42.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:42:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:42:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=42.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:42:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:42:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=42.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:42:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:42:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=34.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:43:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:43:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=34.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:43:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:43:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=34.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:43:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:43:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=34.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:43:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:43:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=28.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:43:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:43:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=28.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:43:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:43:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=28.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:43:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:43:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=28.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:43:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:43:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=22.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:43:29 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:43:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=22.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:43:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:43:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=22.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:43:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:43:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=22.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:43:29 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:43:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:43:39 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:43:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:43:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:43:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:43:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:43:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=18.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:43:39 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:43:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=15.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:43:40 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2137181} -2016-05-03 09:43:40 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:254639} -2016-05-03 09:43:40 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1550965} -2016-05-03 09:43:40 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1865295}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:43:40 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1865295} -2016-05-03 09:43:40 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1865294} -2016-05-03 09:43:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:43:51 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:44:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:44:46 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:45:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:45:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:46:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:46:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:47:53 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 09:47:53 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 09:47:53 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 09:47:53 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:47:53 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:47:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:47:53 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:47:53 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@66eebe8e -2016-05-03 09:47:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:47:53 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:47:53 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:47:53 DEBUG TemplateModel:83 - 2016-05-03 09:47:53, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:47:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:47:53 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 09:47:55 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:47:55 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:47:55 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:47:55 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:47:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:47:55 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:47:55 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:47:55 DEBUG TemplateModel:83 - 2016-05-03 09:47:55, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:47:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:47:55 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:47:55 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 120 ms -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 09:47:55 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 09:47:55 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 09:47:55 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:47:55 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:47:55 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@41b30bf7 -2016-05-03 09:47:55 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6304f399 -2016-05-03 09:47:55 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@2ab31359 -2016-05-03 09:47:55 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@6de7d805 -2016-05-03 09:47:55 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 99 ms -2016-05-03 09:47:56 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 09:47:56 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 09:47:56 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 09:47:56 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 09:47:56 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 09:47:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:47:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:47:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 09:47:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 21 ms -2016-05-03 09:47:56 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 09:47:56 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:47:56 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 09:47:56 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:47:56 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:47:56 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:47:56 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:47:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:47:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:47:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:47:56 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 09:47:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:47:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:47:56 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 09:47:56 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 09:47:56 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 09:47:56 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 09:47:56 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 09:47:56 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 09:47:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:47:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:47:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 09:47:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 24 ms -2016-05-03 09:47:56 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 09:47:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:47:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:47:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:47:56 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 09:47:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:47:56 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 09:47:57 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:47:57 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 09:47:57 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:47:57 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:47:57 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 09:47:57 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:47:57 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:47:57 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 09:47:57 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 09:47:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:47:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:47:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:47:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:47:57 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:47:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 09:47:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:47:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:47:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:47:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:47:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:47:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:47:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:47:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:47:57 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:47:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 09:47:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:47:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:47:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:47:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:47:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:47:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:47:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:47:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:47:57 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:47:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 09:47:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:47:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:47:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:47:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:47:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:47:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:47:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:47:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:47:57 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:47:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 09:47:58 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:47:58 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:47:59 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:47:59 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:47:59 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:47:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:47:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:47:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:47:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:47:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:47:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:47:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:47:59 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 09:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:47:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:47:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:47:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:47:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:47:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:47:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:47:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:47:59 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 09:47:59 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 09:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:47:59 INFO WorkspaceExplorerServiceImpl:188 - end time - 112 msc 0 sec -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:47:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:47:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:47:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:47:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:47:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:47:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:47:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:47:59 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 09:47:59 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 09:47:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:47:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:47:59 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:47:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:47:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:47:59 INFO WorkspaceExplorerServiceImpl:188 - end time - 132 msc 0 sec -2016-05-03 09:47:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:47:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:47:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 09:47:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 09:47:59 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 09:47:59 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 09:47:59 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 09:47:59 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:47:59 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:47:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:47:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:47:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:47:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:47:59 INFO WorkspaceExplorerServiceImpl:188 - end time - 347 msc 0 sec -2016-05-03 09:48:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:48:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:48:02 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:48:02 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 09:48:02 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:48:02 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:48:03 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 09:48:03 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 09:48:03 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 09:48:03 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 09:48:03 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 09:48:03 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 09:48:03 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:48:03 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 09:48:03 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 09:48:03 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 09:48:03 DEBUG WPS2SM:204 - Schema: null -2016-05-03 09:48:03 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 09:48:03 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:48:03 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 09:48:03 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 09:48:03 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 09:48:03 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 09:48:03 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 09:48:03 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 09:48:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 09:48:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 09:48:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:48:03 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 09:48:03 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 09:48:03 DEBUG WPS2SM:92 - WPS type: -2016-05-03 09:48:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 09:48:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 09:48:03 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:48:03 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 09:48:03 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 09:48:03 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 09:48:03 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 09:48:03 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 09:48:03 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 09:48:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 09:48:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 09:48:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:48:03 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 09:48:03 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:03 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:48:03 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:48:03 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:48:03 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:48:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:03 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:48:03 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:03 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:48:03 INFO WorkspaceExplorerServiceImpl:142 - end time - 205 msc 0 sec -2016-05-03 09:48:03 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:48:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:48:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:08 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:08 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:48:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:48:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:48:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:48:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:08 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:48:09 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:48:09 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:48:09 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:48:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:09 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:48:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:09 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:48:09 INFO WorkspaceExplorerServiceImpl:142 - end time - 202 msc 0 sec -2016-05-03 09:48:09 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:10 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:48:10 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:10 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:10 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:10 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:10 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:10 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:10 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:48:10 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:48:10 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:10 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:10 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:48:10 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:48:10 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:48:10 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:48:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:10 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:48:10 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:10 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:48:10 INFO WorkspaceExplorerServiceImpl:142 - end time - 186 msc 0 sec -2016-05-03 09:48:10 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:12 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:48:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:48:12 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:12 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:12 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:48:12 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:48:12 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:48:12 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:48:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:12 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:48:12 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:12 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:48:12 INFO WorkspaceExplorerServiceImpl:142 - end time - 183 msc 0 sec -2016-05-03 09:48:12 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:48:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:48:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:14 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:48:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:48:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:48:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:48:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:48:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:48:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:48:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:48:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:48:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:48:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:14 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:48:14 INFO WorkspaceExplorerServiceImpl:142 - end time - 151 msc 0 sec -2016-05-03 09:48:14 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:48:16 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:48:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:16 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:48:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:48:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:16 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:48:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:48:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:48:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:48:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:48:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:48:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:48:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:48:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:48:16 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:48:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:48:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:48:16 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:48:16 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:48:16 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:48:16 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:48:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:16 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:48:16 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:48:16 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:48:16 INFO WorkspaceExplorerServiceImpl:142 - end time - 174 msc 0 sec -2016-05-03 09:48:16 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:52:33 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 09:52:33 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 09:52:33 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 09:52:33 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:52:33 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:52:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:52:33 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:52:33 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@42c6732 -2016-05-03 09:52:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:52:33 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:52:33 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:52:33 DEBUG TemplateModel:83 - 2016-05-03 09:52:33, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:52:33 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:52:33 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 09:52:35 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:52:35 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:52:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:35 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:52:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:35 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:52:35 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:52:35 DEBUG TemplateModel:83 - 2016-05-03 09:52:35, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:52:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:52:35 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:52:35 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 114 ms -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 09:52:35 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 09:52:35 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 09:52:35 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:52:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:52:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7de26d14 -2016-05-03 09:52:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@695b1d76 -2016-05-03 09:52:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@3e09ad4c -2016-05-03 09:52:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@63b185db -2016-05-03 09:52:36 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 104 ms -2016-05-03 09:52:36 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 09:52:36 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 09:52:36 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 09:52:36 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 09:52:36 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 09:52:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:36 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:52:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 09:52:36 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 18 ms -2016-05-03 09:52:36 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 09:52:36 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:52:36 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 09:52:36 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:52:36 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:52:36 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:52:36 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:52:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:52:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:52:36 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 09:52:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:36 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 09:52:36 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 09:52:36 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 09:52:36 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 09:52:36 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 09:52:36 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 09:52:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:52:36 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:52:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 09:52:37 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 24 ms -2016-05-03 09:52:37 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:52:37 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 09:52:37 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 09:52:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:37 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 09:52:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:37 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 09:52:37 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:52:37 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:52:37 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 09:52:37 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:52:37 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:52:37 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 09:52:37 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 09:52:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:37 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:52:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 09:52:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:37 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:52:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 09:52:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:52:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 09:52:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:52:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 09:52:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:39 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:52:39 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:52:39 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:39 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 09:52:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:39 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 09:52:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:39 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 09:52:39 INFO WorkspaceExplorerServiceImpl:188 - end time - 114 msc 0 sec -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:39 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 09:52:39 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 09:52:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:39 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:39 INFO WorkspaceExplorerServiceImpl:188 - end time - 142 msc 0 sec -2016-05-03 09:52:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:52:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:52:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:52:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:52:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 09:52:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 09:52:39 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 09:52:39 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 09:52:39 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 09:52:39 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:52:39 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:52:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:52:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:52:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 32 -2016-05-03 09:52:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:39 INFO WorkspaceExplorerServiceImpl:188 - end time - 386 msc 0 sec -2016-05-03 09:52:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:43 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:52:43 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:52:43 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 09:52:43 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:52:43 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:52:43 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 09:52:43 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 09:52:43 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 09:52:43 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 09:52:43 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 09:52:43 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 09:52:43 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:52:43 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 09:52:43 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 09:52:43 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 09:52:43 DEBUG WPS2SM:204 - Schema: null -2016-05-03 09:52:43 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 09:52:43 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:52:43 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 09:52:43 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 09:52:43 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 09:52:43 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 09:52:43 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 09:52:43 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 09:52:43 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 09:52:43 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 09:52:43 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:52:43 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 09:52:43 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 09:52:43 DEBUG WPS2SM:92 - WPS type: -2016-05-03 09:52:43 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 09:52:43 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 09:52:43 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:52:43 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 09:52:43 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 09:52:43 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 09:52:43 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 09:52:43 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 09:52:43 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 09:52:43 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 09:52:43 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 09:52:43 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:52:43 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 09:52:43 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:52:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:52:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:44 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:52:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:52:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:52:44 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:52:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:44 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:52:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:52:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:52:44 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:52:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:44 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:44 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:44 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:52:44 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:52:44 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:52:44 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:52:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:52:44 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:52:44 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:52:44 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:52:44 INFO WorkspaceExplorerServiceImpl:142 - end time - 270 msc 0 sec -2016-05-03 09:52:44 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:47 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:52:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:52:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:47 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:47 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:52:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:47 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:52:47 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:52:47 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:52:47 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:52:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:52:47 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:52:47 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:52:47 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:52:47 INFO WorkspaceExplorerServiceImpl:142 - end time - 166 msc 0 sec -2016-05-03 09:52:47 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:48 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:52:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:52:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:48 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:48 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:48 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:48 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:52:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:48 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:52:48 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:52:48 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:52:48 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:52:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:52:48 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:52:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:52:48 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:52:48 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 09:52:48 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:49 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:52:49 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:49 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:52:49 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:49 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:52:49 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:52:50 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:52:50 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:52:50 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:52:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:52:50 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:52:50 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:52:50 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:52:50 INFO WorkspaceExplorerServiceImpl:142 - end time - 171 msc 0 sec -2016-05-03 09:52:50 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:52:56 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:52:56 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:52:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:56 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:52:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:56 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:52:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:52:56 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:52:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:52:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:52:56 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:52:56 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:52:56 DEBUG ServiceEngine:306 - get() - start -2016-05-03 09:52:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:52:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:52:56 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 09:52:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 09:52:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:52:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:52:56 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 09:52:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:52:56 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 09:52:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:52:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:52:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:52:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:52:56 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:52:57 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:52:57 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:57 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:57 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:52:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:52:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:52:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:57 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@eb9c3a51, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@10b3061e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5956a422, socketFactory=javax.net.DefaultSocketFactory@4731e200, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:52:57 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:52:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:52:57 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:52:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:52:57 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:52:57 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:52:57 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:254901}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1865605}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1242337, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2298665, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:57 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:52:57 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:57 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:57 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:57 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:52:57 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2137422}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1028196, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:57 INFO WorkspaceExplorerServiceImpl:188 - end time - 77 msc 0 sec -2016-05-03 09:52:57 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1551206}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:52:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 09:52:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1152480, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 09:52:57 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1865606}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865606}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG command:56 - Command execution completed -2016-05-03 09:52:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865606}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG command:56 - Command execution completed -2016-05-03 09:52:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865606}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG command:56 - Command execution completed -2016-05-03 09:52:57 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:52:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865606}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG command:56 - Command execution completed -2016-05-03 09:52:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865606}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:57 DEBUG command:56 - Command execution completed -2016-05-03 09:52:57 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1865606}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG query:56 - Query completed -2016-05-03 09:52:58 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 09:52:58 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2137422} -2016-05-03 09:52:58 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:254901} -2016-05-03 09:52:58 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1865606}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:52:58 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1551206} -2016-05-03 09:52:58 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1865606} -2016-05-03 09:52:58 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1865605} -2016-05-03 09:52:58 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:52:58 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:52:58 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:58 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:52:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:52:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:52:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:52:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:52:58 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:52:58 DEBUG ServiceEngine:306 - get() - start -2016-05-03 09:52:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:52:58 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:52:58 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 09:52:58 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 09:52:58 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:52:58 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:52:58 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 09:52:58 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:52:58 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:52:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:52:58 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:52:58 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:52:58 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:52:58 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:52:58 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:52:58 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:58 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:58 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:58 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@eb9c3a51, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@10b3061e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5956a422, socketFactory=javax.net.DefaultSocketFactory@4731e200, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:52:58 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:52:58 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:52:58 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:254902}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1865607}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1296078, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:58 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:52:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=3700869, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:58 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:58 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:58 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:58 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2137423}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1202107, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:52:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:58 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1551207}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1419466, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:52:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:52:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:52:58 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1865608}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865608}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG command:56 - Command execution completed -2016-05-03 09:52:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865608}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG command:56 - Command execution completed -2016-05-03 09:52:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865608}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG command:56 - Command execution completed -2016-05-03 09:52:58 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:52:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865608}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG command:56 - Command execution completed -2016-05-03 09:52:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865608}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG command:56 - Command execution completed -2016-05-03 09:52:58 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1865608}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:52:58 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 44 msc 0 sec -2016-05-03 09:52:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:52:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:52:58 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:52:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:52:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 09:52:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:52:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=3.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:52:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:52:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:52:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:52:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:52:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:52:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:52:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:52:58 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:52:58 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 09:52:59 DEBUG query:56 - Query completed -2016-05-03 09:52:59 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 09:52:59 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2137423} -2016-05-03 09:52:59 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:254902} -2016-05-03 09:52:59 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1551207} -2016-05-03 09:52:59 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1865608}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:52:59 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1865608} -2016-05-03 09:52:59 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:52:59 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:52:59 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:52:59 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 09:52:59 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1865607} -2016-05-03 09:52:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:52:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:52:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:52:59 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 09:52:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:52:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:52:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:52:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:52:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:52:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:52:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:52:59 DEBUG ServiceEngine:193 - get() - start -2016-05-03 09:52:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:52:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:52:59 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 09:52:59 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:52:59 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:52:59 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:52:59 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 09:52:59 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:52:59 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:52:59 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:52:59 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:52:59 DEBUG Operation:173 - get(String) - start -2016-05-03 09:52:59 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:52:59 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:52:59 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:52:59 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:52:59 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:59 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:59 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:59 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@eb9c3a51, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@10b3061e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5956a422, socketFactory=javax.net.DefaultSocketFactory@4731e200, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:52:59 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:52:59 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:52:59 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1865610}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:59 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1119568, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:59 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:52:59 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:59 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:254903}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:52:59 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:52:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:52:59 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:52:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1173388, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:59 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2137424}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:52:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:52:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=889810, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:52:59 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1551208}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:52:59 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:52:59 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1543029, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:52:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:53:00 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1865611}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 09:53:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:53:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:53:00 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG query:56 - Query completed -2016-05-03 09:53:00 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 09:53:00 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 09:53:00 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 09:53:00 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG update:56 - Update completed -2016-05-03 09:53:00 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1865611}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG query:56 - Query completed -2016-05-03 09:53:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:53:00 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 09:53:00 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 09:53:00 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 09:53:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:00 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:00 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 09:53:00 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:53:00 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 09:53:00 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:53:00 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 09:53:00 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 09:53:00 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:53:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:00 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:00 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:53:00 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:53:00 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:53:00 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:53:00 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:00 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:00 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:00 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@eb9c3a51, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@10b3061e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5956a422, socketFactory=javax.net.DefaultSocketFactory@4731e200, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:53:00 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:53:00 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:53:00 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1865612}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1378950, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:00 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:53:00 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:00 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:00 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:254904}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1830673, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:00 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2137425}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=839298, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:00 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1551209}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1396580, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:53:00 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1865613}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865613}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865613}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865613}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:53:00 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:53:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865613}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865613}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG command:56 - Command execution completed -2016-05-03 09:53:00 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:53:00 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1865613}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:00 DEBUG query:56 - Query completed -2016-05-03 09:53:00 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 09:53:00 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2137425} -2016-05-03 09:53:00 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:254904} -2016-05-03 09:53:00 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1551209} -2016-05-03 09:53:00 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1865613}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:53:00 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1865613} -2016-05-03 09:53:00 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1865612} -2016-05-03 09:53:00 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:53:00 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:53:00 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:53:00 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:53:00 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:53:00 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 09:53:00 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:53:00 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 09:53:00 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 09:53:09 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:09 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:53:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:53:09 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:53:09 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:09 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:53:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:53:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:53:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:53:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:53:21 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:53:21 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:53:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:53:21 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:53:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:53:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:21 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:53:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:53:21 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:53:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:53:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:53:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:53:21 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:53:21 DEBUG ServiceEngine:306 - get() - start -2016-05-03 09:53:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:21 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:21 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 09:53:21 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 09:53:21 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:53:21 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:53:21 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 09:53:21 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:53:21 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 09:53:21 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:21 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:21 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:53:21 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:53:21 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:53:21 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:53:21 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:21 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:21 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:21 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@eb9c3a51, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@10b3061e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5956a422, socketFactory=javax.net.DefaultSocketFactory@4731e200, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:53:21 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:53:21 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:53:21 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1865616}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1170062, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:21 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:53:21 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:21 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:21 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:254909}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1346058, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:21 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2137430}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=910917, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:21 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1551214}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1361220, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:21 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:53:21 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1865617}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865617}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG command:56 - Command execution completed -2016-05-03 09:53:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865617}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG command:56 - Command execution completed -2016-05-03 09:53:21 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865617}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG command:56 - Command execution completed -2016-05-03 09:53:21 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:53:21 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865617}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG command:56 - Command execution completed -2016-05-03 09:53:21 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865617}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG command:56 - Command execution completed -2016-05-03 09:53:21 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1865617}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:53:21 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:53:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:53:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:53:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:53:21 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:53:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:53:21 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:21 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:21 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:21 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:21 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:21 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:21 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:53:21 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:53:21 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:53:21 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:53:21 INFO WorkspaceExplorerServiceImpl:188 - end time - 48 msc 0 sec -2016-05-03 09:53:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:53:21 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 09:53:22 DEBUG query:56 - Query completed -2016-05-03 09:53:22 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2137430} -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:254909} -2016-05-03 09:53:22 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1865617}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1551214} -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1865617} -2016-05-03 09:53:22 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:53:22 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:53:22 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:53:22 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1865616} -2016-05-03 09:53:22 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:53:22 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:53:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:53:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:22 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:53:22 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:53:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:53:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2137424} -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:254903} -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1551208} -2016-05-03 09:53:22 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1865611}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1865611} -2016-05-03 09:53:22 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1865610} -2016-05-03 09:53:22 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:53:22 DEBUG ServiceEngine:306 - get() - start -2016-05-03 09:53:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:22 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:22 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 09:53:22 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 09:53:22 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:53:22 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:53:22 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 09:53:22 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:53:22 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:53:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:22 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:22 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:53:22 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:53:22 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:53:22 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:53:22 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:22 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:22 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:22 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@eb9c3a51, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@10b3061e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5956a422, socketFactory=javax.net.DefaultSocketFactory@4731e200, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:53:22 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:53:22 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:53:22 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1865620}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:254910}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1370796, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:22 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:53:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2465994, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:22 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:22 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:22 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:22 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2137432}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=944801, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:22 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1551215}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1307091, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 09:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:53:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:53:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:53:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:53:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:53:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:22 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1865621}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865621}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:53:22 DEBUG command:56 - Command execution completed -2016-05-03 09:53:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865621}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 DEBUG command:56 - Command execution completed -2016-05-03 09:53:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865621}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:53:22 DEBUG command:56 - Command execution completed -2016-05-03 09:53:22 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:53:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865621}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 DEBUG command:56 - Command execution completed -2016-05-03 09:53:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865621}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 DEBUG command:56 - Command execution completed -2016-05-03 09:53:22 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1865621}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:22 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:53:22 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:53:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 42 msc 0 sec -2016-05-03 09:53:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:53:22 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:53:22 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:53:22 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:53:22 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 09:53:23 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 09:53:23 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 09:53:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:53:23 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:53:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:53:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:23 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 09:53:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:53:23 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:53:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:53:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:23 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 09:53:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:53:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:53:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:53:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:23 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 09:53:23 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 09:53:23 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 09:53:23 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 09:53:23 DEBUG query:56 - Query completed -2016-05-03 09:53:23 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 09:53:23 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2137432} -2016-05-03 09:53:23 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:254910} -2016-05-03 09:53:23 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1551215} -2016-05-03 09:53:23 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1865621}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:53:23 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1865621} -2016-05-03 09:53:23 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:53:23 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1865620} -2016-05-03 09:53:23 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:53:23 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:53:23 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 09:53:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:53:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:53:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:53:24 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-03 09:53:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:24 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 09:53:24 DEBUG ServiceEngine:193 - get() - start -2016-05-03 09:53:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:24 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 09:53:24 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:53:24 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:53:24 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:53:24 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 09:53:24 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:53:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:24 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 09:53:24 DEBUG Operation:173 - get(String) - start -2016-05-03 09:53:24 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:53:24 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:53:24 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:53:24 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:53:24 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:24 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:24 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@eb9c3a51, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@10b3061e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5956a422, socketFactory=javax.net.DefaultSocketFactory@4731e200, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:53:24 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:53:24 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:254911}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1451059, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:24 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:53:24 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:24 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2137433}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=988548, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1865622}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1353432, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:24 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1551216}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1128865, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1865623}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 09:53:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 09:53:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 09:53:24 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG query:56 - Query completed -2016-05-03 09:53:24 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 09:53:24 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 09:53:24 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 09:53:24 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG update:56 - Update completed -2016-05-03 09:53:24 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1865623}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG query:56 - Query completed -2016-05-03 09:53:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:53:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:53:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:53:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:53:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:53:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:53:24 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 09:53:24 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-03 09:53:24 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 09:53:24 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 09:53:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:24 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 09:53:24 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:53:24 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 09:53:24 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:53:24 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 09:53:24 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 09:53:24 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:53:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:53:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:53:24 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:53:24 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:53:24 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:53:24 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:53:24 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:24 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:24 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@eb9c3a51, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@10b3061e, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@5956a422, socketFactory=javax.net.DefaultSocketFactory@4731e200, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:53:24 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:53:24 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1865624}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:254912}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1280307, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:24 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:53:24 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:24 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:53:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1163272, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:24 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2137434}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=836520, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1551217}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1657302, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:53:24 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1865625}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865625}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865625}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865625}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 09:53:24 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 09:53:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865625}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865625}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG command:56 - Command execution completed -2016-05-03 09:53:24 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 09:53:24 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1865625}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG query:56 - Query completed -2016-05-03 09:53:24 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 09:53:24 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2137434} -2016-05-03 09:53:24 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:254912} -2016-05-03 09:53:24 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1865625}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:53:24 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1865625} -2016-05-03 09:53:24 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1551217} -2016-05-03 09:53:24 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:53:24 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1865624} -2016-05-03 09:53:24 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 09:53:24 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 09:53:24 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 09:53:24 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 09:53:24 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 09:53:24 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 09:53:24 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 09:53:24 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 09:53:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 09:53:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:53:28 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:53:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 09:53:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 09:53:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 09:53:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 09:53:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 09:53:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:53:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:53:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:53:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:53:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:53:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:53:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:53:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:53:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:53:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:53:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:54:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:54:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:54:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:54:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:54:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:54:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:54:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:54:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:54:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:54:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:54:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:54:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:54:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:54:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:54:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:54:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:54:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:54:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:54:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:54:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:54:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:54:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:54:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:54:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:54:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:54:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:54:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:54:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:54:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:54:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:54:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:54:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:54:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 09:54:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:54:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:54:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:54:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:54:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:54:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:55:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:55:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:55:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:55:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:55:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:55:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:55:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:55:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:55:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:55:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 09:55:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:55:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:55:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:55:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:55:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:55:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:55:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:55:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:55:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:55:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:55:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:55:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:55:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:55:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:55:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:55:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:55:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:55:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:55:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:55:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:55:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:55:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:55:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:55:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:55:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:55:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}] -2016-05-03 09:55:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:55:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:55:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:55:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:55:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:55:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:55:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:55:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:55:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:55:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:55:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:55:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:55:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:55:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:56:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:56:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:56:04 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:56:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:56:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:56:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:56:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:56:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:56:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 09:56:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 09:56:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:56:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 09:56:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:56:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:56:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:56:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:56:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:56:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.0 ms, state=CONNECTED}] -2016-05-03 09:56:53 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 09:56:53 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 09:56:53 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 09:56:53 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:56:53 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:56:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:56:53 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:56:53 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3a96f8b2 -2016-05-03 09:56:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:56:53 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:56:53 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:56:53 DEBUG TemplateModel:83 - 2016-05-03 09:56:53, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:56:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:56:53 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 09:56:55 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:56:55 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:56:55 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:56:55 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:56:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:56:55 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:56:55 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:56:55 DEBUG TemplateModel:83 - 2016-05-03 09:56:55, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:56:55 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:56:55 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:56:56 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 126 ms -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 09:56:56 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 09:56:56 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 09:56:56 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:56:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:56:56 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7977d826 -2016-05-03 09:56:56 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@7c4dac03 -2016-05-03 09:56:56 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@72be4bf2 -2016-05-03 09:56:56 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@cb49212 -2016-05-03 09:56:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 102 ms -2016-05-03 09:56:56 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 09:56:56 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 09:56:56 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 09:56:56 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 09:56:56 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 09:56:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:56:56 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:56:56 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 09:56:56 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-03 09:56:56 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 09:56:56 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:56:56 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 09:56:56 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:56:57 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:56:57 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:56:57 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:56:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:56:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:56:57 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:56:57 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 09:56:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:56:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:56:57 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 09:56:57 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 09:56:57 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 09:56:57 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 09:56:57 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 09:56:57 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 09:56:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 09:56:57 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:56:57 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 09:56:57 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-03 09:56:57 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 09:56:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:56:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:56:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:56:57 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 09:56:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:56:57 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 09:56:57 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:56:57 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 09:56:57 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:56:57 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:56:57 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 09:56:57 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:56:57 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:56:57 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 09:56:57 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 09:56:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:56:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:56:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:56:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:56:57 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:56:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 09:56:57 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:56:57 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:56:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:56:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:56:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:56:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:56:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:56:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:56:58 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 09:56:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:56:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:56:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:56:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:56:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:56:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:56:59 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 09:56:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:56:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:56:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:56:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:56:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:56:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:56:59 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 09:56:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:56:59 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:56:59 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:56:59 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:56:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:56:59 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:56:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:56:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:56:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:56:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:56:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:56:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:56:59 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 09:56:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:56:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:56:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:56:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:56:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:56:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:56:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:56:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:56:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:56:59 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 09:56:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 09:56:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:56:59 INFO WorkspaceExplorerServiceImpl:188 - end time - 113 msc 0 sec -2016-05-03 09:56:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:56:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:56:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:56:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:56:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:56:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:56:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:56:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:56:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:56:59 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 09:56:59 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 09:56:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:00 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 09:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:57:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:57:00 INFO WorkspaceExplorerServiceImpl:188 - end time - 162 msc 0 sec -2016-05-03 09:57:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 28 ms -2016-05-03 09:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:57:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:57:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 09:57:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 09:57:00 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 09:57:00 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 09:57:00 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 09:57:00 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 09:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:57:00 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 09:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:57:00 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:57:00 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:57:00 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 09:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:57:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:00 INFO WorkspaceExplorerServiceImpl:188 - end time - 375 msc 0 sec -2016-05-03 09:57:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:57:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:57:03 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 09:57:03 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:57:03 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:57:03 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 09:57:03 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 09:57:03 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 09:57:03 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 09:57:03 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 09:57:03 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 09:57:03 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:57:03 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 09:57:03 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 09:57:03 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 09:57:03 DEBUG WPS2SM:204 - Schema: null -2016-05-03 09:57:03 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 09:57:03 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:57:03 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 09:57:03 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 09:57:03 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 09:57:03 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 09:57:03 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 09:57:03 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 09:57:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 09:57:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 09:57:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:57:03 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 09:57:03 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 09:57:03 DEBUG WPS2SM:92 - WPS type: -2016-05-03 09:57:03 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 09:57:03 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 09:57:03 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:57:03 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 09:57:03 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 09:57:03 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 09:57:03 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 09:57:03 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 09:57:03 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 09:57:03 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 09:57:03 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 09:57:03 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:57:03 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 09:57:03 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 09:57:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:03 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:57:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:57:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:57:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:57:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:57:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:03 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:57:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:04 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:57:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:57:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:57:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:57:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:57:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:57:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:57:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:57:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:57:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:57:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:57:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:57:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 219 msc 0 sec -2016-05-03 09:57:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:57:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:57:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:06 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:06 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:57:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:57:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:57:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:06 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:57:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:57:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:57:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:57:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:57:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:57:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:57:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:57:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:57:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 164 msc 0 sec -2016-05-03 09:57:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:57:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:57:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:57:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:57:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:57:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:57:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:57:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:57:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:57:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:57:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:57:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 188 msc 0 sec -2016-05-03 09:57:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:57:13 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:57:13 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:13 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:13 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:13 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:13 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:57:13 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:57:13 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:57:13 DEBUG ServiceEngine:306 - get() - start -2016-05-03 09:57:13 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:57:13 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:57:13 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 09:57:13 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 09:57:13 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:57:13 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:57:13 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 09:57:13 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:57:13 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 09:57:13 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:57:13 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:57:13 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:57:13 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:57:13 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:57:13 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:57:13 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:13 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:13 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:57:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:13 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:57:13 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:57:13 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:13 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:13 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@323ed0b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@31bf4445, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@41b2787, socketFactory=javax.net.DefaultSocketFactory@12c0122c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:57:13 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:57:13 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:57:13 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 09:57:13 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:57:13 INFO WorkspaceExplorerServiceImpl:188 - end time - 57 msc 0 sec -2016-05-03 09:57:13 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:57:13 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:254952}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:57:13 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 09:57:13 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1271083, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:13 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:57:13 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:13 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1865663}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:13 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:13 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1628003, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:13 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:13 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:2137474}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=885813, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:13 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:13 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:1551257}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1398617, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:13 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:57:13 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1865664}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865664}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG command:56 - Command execution completed -2016-05-03 09:57:13 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865664}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG command:56 - Command execution completed -2016-05-03 09:57:13 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865664}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG command:56 - Command execution completed -2016-05-03 09:57:13 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:57:13 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865664}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG command:56 - Command execution completed -2016-05-03 09:57:13 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865664}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG command:56 - Command execution completed -2016-05-03 09:57:13 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1865664}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:13 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 09:57:14 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:57:14 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:14 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:57:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:57:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:14 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:57:14 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:57:14 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:57:14 DEBUG ServiceEngine:306 - get() - start -2016-05-03 09:57:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:57:14 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:57:14 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 09:57:14 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 09:57:14 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:57:14 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:57:14 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 09:57:14 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:57:14 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:57:14 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:57:14 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:57:14 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:57:14 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:57:14 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:57:14 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:57:14 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:14 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:14 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:14 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@323ed0b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@31bf4445, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@41b2787, socketFactory=javax.net.DefaultSocketFactory@12c0122c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:57:14 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:57:14 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:57:14 DEBUG query:56 - Query completed -2016-05-03 09:57:14 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 09:57:14 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:2137474} -2016-05-03 09:57:14 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:254952} -2016-05-03 09:57:14 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:1551257} -2016-05-03 09:57:14 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1865664}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:57:14 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1865664} -2016-05-03 09:57:14 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1865663} -2016-05-03 09:57:14 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:57:14 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:57:14 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 09:57:14 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 09:57:14 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:254953}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1865665}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1471980, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:14 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:57:14 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:14 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1514590, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:14 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:14 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2137475}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1304689, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:14 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1551258}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1575161, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:57:14 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1865666}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865666}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG command:56 - Command execution completed -2016-05-03 09:57:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865666}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG command:56 - Command execution completed -2016-05-03 09:57:14 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865666}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG command:56 - Command execution completed -2016-05-03 09:57:14 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:57:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865666}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG command:56 - Command execution completed -2016-05-03 09:57:14 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865666}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG command:56 - Command execution completed -2016-05-03 09:57:14 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1865666}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:57:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:57:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:14 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:57:14 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 09:57:14 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:57:14 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 09:57:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 53 msc 0 sec -2016-05-03 09:57:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 09:57:14 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:57:14 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:57:14 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 09:57:14 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 09:57:14 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:14 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:57:14 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:57:14 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:14 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:14 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:14 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:57:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:14 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:57:14 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:57:14 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:57:15 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 09:57:15 DEBUG query:56 - Query completed -2016-05-03 09:57:15 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 09:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2137475} -2016-05-03 09:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:254953} -2016-05-03 09:57:15 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1865666}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1551258} -2016-05-03 09:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1865666} -2016-05-03 09:57:15 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:57:15 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:57:15 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 09:57:15 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1865665} -2016-05-03 09:57:15 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 09:57:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:57:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:57:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:57:15 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 09:57:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:15 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:15 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:15 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:15 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:15 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:57:15 DEBUG ServiceEngine:193 - get() - start -2016-05-03 09:57:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:57:15 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:57:15 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 09:57:15 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:57:15 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:57:15 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 09:57:15 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 09:57:15 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:57:15 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:57:15 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:57:15 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:57:15 DEBUG Operation:173 - get(String) - start -2016-05-03 09:57:15 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:57:15 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:57:15 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:57:15 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:57:15 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:15 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:15 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:15 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@323ed0b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@31bf4445, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@41b2787, socketFactory=javax.net.DefaultSocketFactory@12c0122c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:57:15 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:57:15 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:254954}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1314224, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:16 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:57:16 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1865668}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1838761, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:16 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2137476}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=865654, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1551259}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1471256, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1865669}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 09:57:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:57:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:57:16 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG query:56 - Query completed -2016-05-03 09:57:16 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 09:57:16 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 09:57:16 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 09:57:16 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG update:56 - Update completed -2016-05-03 09:57:16 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1865669}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG query:56 - Query completed -2016-05-03 09:57:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:16 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 09:57:16 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 09:57:16 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 09:57:16 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 09:57:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:57:16 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:57:16 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 09:57:16 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 09:57:16 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 09:57:16 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 09:57:16 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 09:57:16 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 09:57:16 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 09:57:16 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 09:57:16 DEBUG BucketCoding:42 - coding name done -2016-05-03 09:57:16 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 09:57:16 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 09:57:16 DEBUG MongoIO:77 - open mongo connection -2016-05-03 09:57:16 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 09:57:16 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:16 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:16 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@323ed0b, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@31bf4445, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@41b2787, socketFactory=javax.net.DefaultSocketFactory@12c0122c, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 09:57:16 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 09:57:16 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:254955}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1183688, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:16 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 09:57:16 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:16 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2137477}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=785525, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1865670}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1248977, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:16 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1551260}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1909358, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 09:57:16 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1865671}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865671}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865671}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865671}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:57:16 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:57:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865671}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865671}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG command:56 - Command execution completed -2016-05-03 09:57:16 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:57:16 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1865671}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG query:56 - Query completed -2016-05-03 09:57:16 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 09:57:16 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2137477} -2016-05-03 09:57:16 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:254955} -2016-05-03 09:57:16 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1551260} -2016-05-03 09:57:16 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1865671}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:57:16 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1865671} -2016-05-03 09:57:16 INFO MongoIO:508 - Mongo has been closed -2016-05-03 09:57:16 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1865670} -2016-05-03 09:57:16 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 09:57:16 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:57:16 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:57:16 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:57:16 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 09:57:16 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 09:57:16 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 09:57:16 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 09:57:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:57:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 09:57:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 09:57:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:57:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 09:57:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 09:57:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:57:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 09:57:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 09:57:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:29 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:57:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:57:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:29 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:57:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:57:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:57:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:57:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:57:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:57:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:57:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:57:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:57:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:57:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:57:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:29 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2137476} -2016-05-03 09:57:29 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1551259} -2016-05-03 09:57:29 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:254954} -2016-05-03 09:57:29 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1865669}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 09:57:29 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1865669} -2016-05-03 09:57:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:29 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1865668} -2016-05-03 09:57:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:57:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:57:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:29 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:57:29 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:57:29 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:57:29 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:57:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:57:29 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:57:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:57:29 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:57:29 INFO WorkspaceExplorerServiceImpl:142 - end time - 155 msc 0 sec -2016-05-03 09:57:29 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:57:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:57:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:57:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:57:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:57:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:57:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:59:12 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 09:59:12 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 09:59:12 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 09:59:12 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:59:12 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:59:12 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:59:12 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:59:12 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4b2c0ce7 -2016-05-03 09:59:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:12 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:59:12 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:59:12 DEBUG TemplateModel:83 - 2016-05-03 09:59:12, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:59:12 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:59:12 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 09:59:14 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 09:59:14 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 09:59:14 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:14 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 09:59:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:14 INFO ASLSession:352 - Logging the entrance -2016-05-03 09:59:14 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 09:59:14 DEBUG TemplateModel:83 - 2016-05-03 09:59:14, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 09:59:14 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:59:14 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:59:14 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 120 ms -2016-05-03 09:59:14 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 09:59:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 09:59:15 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 09:59:15 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:59:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 09:59:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@7bbee39c -2016-05-03 09:59:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@7197f102 -2016-05-03 09:59:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@e285d89 -2016-05-03 09:59:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@32801318 -2016-05-03 09:59:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 95 ms -2016-05-03 09:59:15 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 09:59:15 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 09:59:15 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 09:59:15 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 09:59:15 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 09:59:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:59:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 09:59:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 16 ms -2016-05-03 09:59:15 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 09:59:15 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:59:15 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 09:59:15 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:59:15 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:59:15 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:59:15 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:59:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:15 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:59:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:59:15 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 09:59:15 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:15 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:15 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 09:59:15 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 09:59:15 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 09:59:15 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 09:59:15 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 09:59:15 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 09:59:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 09:59:15 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:59:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 09:59:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-03 09:59:16 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 09:59:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 09:59:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 09:59:16 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:59:16 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 09:59:16 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:59:16 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:59:16 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 09:59:16 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 09:59:16 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 09:59:16 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:16 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 09:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 09:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:16 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 09:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:16 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 09:59:16 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:16 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:16 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 09:59:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 09:59:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:17 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 09:59:17 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 09:59:17 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:17 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 09:59:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:17 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 09:59:17 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 09:59:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:17 INFO WorkspaceExplorerServiceImpl:188 - end time - 119 msc 0 sec -2016-05-03 09:59:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:17 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:17 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:17 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 09:59:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:17 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:59:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:59:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 32 ms -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:59:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:59:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 09:59:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 09:59:17 INFO WorkspaceExplorerServiceImpl:188 - end time - 169 msc 0 sec -2016-05-03 09:59:17 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 09:59:17 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 09:59:17 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 09:59:17 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:59:17 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:59:17 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 09:59:17 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 09:59:17 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 09:59:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:17 INFO WorkspaceExplorerServiceImpl:188 - end time - 342 msc 0 sec -2016-05-03 09:59:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:24 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 09:59:24 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 09:59:24 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:59:24 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 09:59:25 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 09:59:25 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 09:59:25 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 09:59:25 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 09:59:25 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 09:59:25 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 09:59:25 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 09:59:25 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 09:59:25 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 09:59:25 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 09:59:25 DEBUG WPS2SM:204 - Schema: null -2016-05-03 09:59:25 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 09:59:25 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:59:25 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 09:59:25 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 09:59:25 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 09:59:25 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 09:59:25 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 09:59:25 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 09:59:25 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 09:59:25 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 09:59:25 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:59:25 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 09:59:25 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 09:59:25 DEBUG WPS2SM:92 - WPS type: -2016-05-03 09:59:25 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 09:59:25 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 09:59:25 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 09:59:25 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 09:59:25 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 09:59:25 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 09:59:25 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 09:59:25 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 09:59:25 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 09:59:25 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 09:59:25 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 09:59:25 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 09:59:25 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 09:59:25 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:25 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:59:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:25 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:25 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:59:25 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:59:25 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:59:25 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:59:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:25 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:59:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:25 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:59:25 INFO WorkspaceExplorerServiceImpl:142 - end time - 207 msc 0 sec -2016-05-03 09:59:25 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:59:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:59:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:59:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:59:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:59:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:59:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:59:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:59:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:59:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 195 msc 0 sec -2016-05-03 09:59:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:29 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:29 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:29 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:59:29 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:59:29 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:59:29 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:59:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:29 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:59:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:29 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:59:29 INFO WorkspaceExplorerServiceImpl:142 - end time - 160 msc 0 sec -2016-05-03 09:59:29 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:30 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:59:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:59:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:59:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:30 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:59:31 INFO WorkspaceExplorerServiceImpl:142 - end time - 1165 msc 1 sec -2016-05-03 09:59:31 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 09:59:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:31 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:59:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:31 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:59:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:31 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:59:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:31 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:59:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:31 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:59:31 INFO WorkspaceExplorerServiceImpl:142 - end time - 190 msc 0 sec -2016-05-03 09:59:31 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 09:59:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:33 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:59:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:59:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:33 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:59:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:33 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:33 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:59:33 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:59:33 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:59:33 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:59:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:33 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:59:33 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:33 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:59:33 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 09:59:33 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:34 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 09:59:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:34 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 09:59:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 09:59:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 09:59:34 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 09:59:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 09:59:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 09:59:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 09:59:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 09:59:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 09:59:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 09:59:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 09:59:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 09:59:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 09:59:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 09:59:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 09:59:35 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 09:59:35 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 09:59:35 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 09:59:35 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 09:59:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:35 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 09:59:35 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 09:59:35 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 09:59:35 INFO WorkspaceExplorerServiceImpl:142 - end time - 158 msc 0 sec -2016-05-03 09:59:35 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:00:13 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 10:00:13 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 10:00:13 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 10:00:13 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:00:13 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:00:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:13 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:00:13 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@1b7b70a8 -2016-05-03 10:00:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:13 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:00:13 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:00:13 DEBUG TemplateModel:83 - 2016-05-03 10:00:13, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:00:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:00:13 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 10:00:15 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:00:15 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:00:15 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:15 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:00:15 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:15 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:00:15 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:00:15 DEBUG TemplateModel:83 - 2016-05-03 10:00:15, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:00:15 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:00:15 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:00:15 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 112 ms -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 10:00:15 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 10:00:15 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 10:00:15 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:00:15 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:00:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@69f40372 -2016-05-03 10:00:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@3ee0e8cd -2016-05-03 10:00:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@367f2474 -2016-05-03 10:00:15 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@5a0fcf83 -2016-05-03 10:00:15 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 130 ms -2016-05-03 10:00:15 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 10:00:16 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 10:00:16 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 10:00:16 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 10:00:16 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 10:00:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:00:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 10:00:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 26 ms -2016-05-03 10:00:16 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 10:00:16 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:00:16 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 10:00:16 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:00:16 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:00:16 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:00:16 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:00:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:16 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:16 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:00:16 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 10:00:16 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:16 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:16 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 10:00:16 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 10:00:16 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 10:00:16 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 10:00:16 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 10:00:16 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 10:00:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 10:00:16 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:00:16 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 10:00:16 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 39 ms -2016-05-03 10:00:16 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 10:00:16 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:16 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:16 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:16 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 10:00:16 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:16 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 10:00:16 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:00:16 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 10:00:16 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:00:17 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:00:17 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 10:00:17 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:00:17 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:00:17 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:17 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 10:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:17 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 10:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:17 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 10:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:17 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 10:00:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:18 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:00:18 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:00:18 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:00:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:00:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:18 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 10:00:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:18 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:18 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 10:00:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:18 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 10:00:18 INFO WorkspaceExplorerServiceImpl:188 - end time - 124 msc 0 sec -2016-05-03 10:00:18 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 10:00:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:00:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:18 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 10:00:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:18 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 10:00:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 10:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:19 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:00:19 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:00:19 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 24 ms -2016-05-03 10:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 10:00:19 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:00:19 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 10:00:19 INFO WorkspaceExplorerServiceImpl:188 - end time - 143 msc 0 sec -2016-05-03 10:00:19 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 21 ms -2016-05-03 10:00:19 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 10:00:19 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 10:00:19 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 10:00:19 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 10:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 10:00:19 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 10:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 10:00:19 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:00:19 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:00:19 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 10:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 10:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 10:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 30 -2016-05-03 10:00:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:19 INFO WorkspaceExplorerServiceImpl:188 - end time - 332 msc 0 sec -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:22 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:22 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:00:22 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 10:00:22 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:00:22 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:00:22 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 10:00:22 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 10:00:22 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 10:00:22 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 10:00:22 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 10:00:22 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 10:00:22 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:00:22 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:00:22 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:00:22 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:00:22 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:00:22 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:00:22 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:00:22 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:00:22 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:00:22 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:00:22 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:00:22 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:00:22 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:00:22 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:00:22 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:00:22 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:00:22 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:00:22 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:00:22 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:00:22 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:00:22 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:00:22 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:00:22 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:00:22 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:00:22 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:00:22 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:00:22 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:00:22 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:00:22 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:00:22 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:00:22 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:00:22 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:00:22 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:22 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:00:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:00:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:22 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:22 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:22 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:23 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:00:23 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:00:23 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:00:23 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:00:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:23 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:00:23 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:23 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:00:23 INFO WorkspaceExplorerServiceImpl:142 - end time - 190 msc 0 sec -2016-05-03 10:00:23 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:24 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:24 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:00:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:00:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:24 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:24 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:24 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:24 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:00:24 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:00:24 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:00:24 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:00:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:24 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:00:24 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:24 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:00:24 INFO WorkspaceExplorerServiceImpl:142 - end time - 184 msc 0 sec -2016-05-03 10:00:24 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:25 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:25 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:00:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:00:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:25 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:25 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:25 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:25 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:00:25 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:00:25 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:00:25 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:00:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:25 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:00:25 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:25 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:00:25 INFO WorkspaceExplorerServiceImpl:142 - end time - 161 msc 0 sec -2016-05-03 10:00:25 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:26 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:26 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:26 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:26 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:26 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:26 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:26 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:26 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:26 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:00:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:26 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:00:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:26 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:26 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:00:26 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:26 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:26 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:00:26 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:00:26 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:00:26 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:00:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:26 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:00:26 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:26 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:00:26 INFO WorkspaceExplorerServiceImpl:142 - end time - 194 msc 0 sec -2016-05-03 10:00:26 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:27 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:00:27 INFO WorkspaceExplorerServiceImpl:142 - end time - 156 msc 0 sec -2016-05-03 10:00:27 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:27 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:27 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:27 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:27 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:27 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:27 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:27 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:27 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:27 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:00:27 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 10:00:27 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:28 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:28 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:00:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:28 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:28 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:00:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:28 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:28 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:28 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:28 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:28 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:28 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:28 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:28 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:00:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:28 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:28 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:28 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:00:28 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:00:28 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:00:28 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:00:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:28 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:00:28 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:28 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:00:28 INFO WorkspaceExplorerServiceImpl:142 - end time - 168 msc 0 sec -2016-05-03 10:00:28 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:29 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:29 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:00:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:00:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:29 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:29 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:29 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:29 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:29 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:29 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:29 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:29 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:00:29 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:29 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:29 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:00:29 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:00:29 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:00:29 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:00:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:29 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:00:29 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:29 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:00:29 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 10:00:29 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:30 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:00:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:30 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:00:30 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:00:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:00:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:00:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:00:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:00:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:00:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:00:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:00:30 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:00:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:00:30 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:00:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:00:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:00:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:00:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:00:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:00:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:00:31 INFO WorkspaceExplorerServiceImpl:142 - end time - 1146 msc 1 sec -2016-05-03 10:00:31 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:01:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:01:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:02:34 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 10:02:34 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 10:02:34 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 10:02:34 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:02:34 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:02:34 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:02:34 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:02:34 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3c13a7c5 -2016-05-03 10:02:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:34 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:02:34 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:02:34 DEBUG TemplateModel:83 - 2016-05-03 10:02:34, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:02:34 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:02:34 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 10:02:35 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:02:35 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:02:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:02:35 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:02:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:02:35 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:02:35 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:02:35 DEBUG TemplateModel:83 - 2016-05-03 10:02:35, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:02:35 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:02:35 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:02:36 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 130 ms -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 10:02:36 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 10:02:36 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 10:02:36 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:02:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:02:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@79866678 -2016-05-03 10:02:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@4ac162a6 -2016-05-03 10:02:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@4b1e1fd0 -2016-05-03 10:02:36 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@19a8e3ff -2016-05-03 10:02:36 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 100 ms -2016-05-03 10:02:36 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 10:02:36 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 10:02:36 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 10:02:36 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 10:02:36 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 10:02:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:02:36 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:02:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 10:02:36 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 17 ms -2016-05-03 10:02:36 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 10:02:36 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:02:36 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 10:02:36 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:02:36 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:02:36 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:02:36 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:02:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:02:36 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:02:36 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 10:02:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:36 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 10:02:36 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 10:02:36 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 10:02:36 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 10:02:36 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 10:02:36 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 10:02:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 10:02:36 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:02:36 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 10:02:36 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 20 ms -2016-05-03 10:02:37 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 10:02:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:37 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 10:02:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:37 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 10:02:37 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:02:37 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:02:37 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 10:02:37 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:02:37 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 10:02:37 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:02:37 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:02:37 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 10:02:37 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 10:02:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:37 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:02:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 10:02:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:37 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:02:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 10:02:37 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:37 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:02:37 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 10:02:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:38 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:02:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 10:02:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:38 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:02:38 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:02:38 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:02:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:02:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:02:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:02:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:38 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 10:02:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:02:38 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:02:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:02:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:38 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 10:02:38 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 10:02:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:38 INFO WorkspaceExplorerServiceImpl:188 - end time - 137 msc 0 sec -2016-05-03 10:02:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:38 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 10:02:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:38 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:02:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:38 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:38 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:38 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:38 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:38 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:38 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:38 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 10:02:38 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:38 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:38 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 10:02:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:02:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:02:38 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:02:38 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:02:38 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 25 ms -2016-05-03 10:02:38 INFO WorkspaceExplorerServiceImpl:188 - end time - 121 msc 0 sec -2016-05-03 10:02:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:02:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:02:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 10:02:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 26 ms -2016-05-03 10:02:39 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 10:02:39 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 10:02:39 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 10:02:39 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 10:02:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:02:39 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 10:02:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:02:39 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:02:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:02:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 10:02:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:02:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:02:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:02:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:02:39 INFO WorkspaceExplorerServiceImpl:188 - end time - 345 msc 0 sec -2016-05-03 10:02:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:02:46 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:02:46 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:02:46 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 10:02:46 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:02:46 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:02:47 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 10:02:47 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 10:02:47 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 10:02:47 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 10:02:47 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 10:02:47 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 10:02:47 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:02:47 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:02:47 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:02:47 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:02:47 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:02:47 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:02:47 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:02:47 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:02:47 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:02:47 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:02:47 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:02:47 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:02:47 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:02:47 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:02:47 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:02:47 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:02:47 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:02:47 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:02:47 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:02:47 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:02:47 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:02:47 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:02:47 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:02:47 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:02:47 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:02:47 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:02:47 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:02:47 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:02:47 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:02:47 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:02:47 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:02:47 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:02:47 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:02:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:02:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:02:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:02:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:47 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:02:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:02:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:02:47 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:02:48 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:02:48 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:02:48 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:02:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:02:48 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:02:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:02:48 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:02:48 INFO WorkspaceExplorerServiceImpl:142 - end time - 185 msc 0 sec -2016-05-03 10:02:48 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:02:53 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:02:53 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:02:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:02:53 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:02:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:02:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:53 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:02:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:02:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:02:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:02:53 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:02:53 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:02:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:02:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:02:53 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:02:53 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:02:53 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:02:53 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:02:53 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:02:53 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:02:53 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:02:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:02:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:02:53 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:02:53 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:02:53 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:02:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:02:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:02:54 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:02:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:02:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:54 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:02:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:54 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:02:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:54 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:02:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@99546abb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6bf2dee3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@36184951, socketFactory=javax.net.DefaultSocketFactory@74494718, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:02:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:02:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:02:54 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:02:54 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:02:54 INFO WorkspaceExplorerServiceImpl:188 - end time - 73 msc 0 sec -2016-05-03 10:02:54 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:02:54 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:02:54 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:02:54 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:255012}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1482917, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:02:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:54 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1865729}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1480004, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:54 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2137534}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=880598, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:54 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1551317}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1520106, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 10:02:54 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1865730}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG command:56 - Command execution completed -2016-05-03 10:02:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG command:56 - Command execution completed -2016-05-03 10:02:54 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG command:56 - Command execution completed -2016-05-03 10:02:54 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:02:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG command:56 - Command execution completed -2016-05-03 10:02:54 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG command:56 - Command execution completed -2016-05-03 10:02:54 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1865730}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:02:54 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:02:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:02:54 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:02:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:02:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:54 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:02:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:54 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:02:54 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:54 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:54 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:54 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:54 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:54 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:54 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:54 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:02:54 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:02:54 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:02:54 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:02:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:02:54 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:02:54 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:02:54 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:02:54 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:02:54 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:02:54 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:02:54 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:02:54 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:02:54 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:02:54 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:02:54 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:02:54 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:02:54 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:02:54 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:02:54 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:54 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:54 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:54 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@99546abb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6bf2dee3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@36184951, socketFactory=javax.net.DefaultSocketFactory@74494718, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:02:54 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:02:54 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:02:54 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:255013}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1865731}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1195688, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:54 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:02:54 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:54 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1250553, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:54 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:54 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2137535}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:02:54 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=964365, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:55 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1551318}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1323916, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:02:55 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1865732}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865732}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 DEBUG command:56 - Command execution completed -2016-05-03 10:02:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865732}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:02:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:55 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:02:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:02:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:55 DEBUG command:56 - Command execution completed -2016-05-03 10:02:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:55 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865732}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 DEBUG command:56 - Command execution completed -2016-05-03 10:02:55 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:02:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865732}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 DEBUG command:56 - Command execution completed -2016-05-03 10:02:55 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865732}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:02:55 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:02:55 DEBUG command:56 - Command execution completed -2016-05-03 10:02:55 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1865732}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:02:55 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:02:55 INFO WorkspaceExplorerServiceImpl:188 - end time - 45 msc 0 sec -2016-05-03 10:02:55 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:02:55 DEBUG query:56 - Query completed -2016-05-03 10:02:55 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2137534} -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:255012} -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1551317} -2016-05-03 10:02:55 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1865730}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1865730} -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1865729} -2016-05-03 10:02:55 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:02:55 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:02:55 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:02:55 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:02:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:02:55 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:02:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:02:55 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:02:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:02:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:02:55 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:02:55 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:55 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:02:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:55 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:55 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:02:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:55 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:02:55 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:02:55 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:02:55 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:55 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:55 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:55 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:55 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:55 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:55 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:02:55 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:02:55 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:02:55 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:02:55 DEBUG query:56 - Query completed -2016-05-03 10:02:55 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2137535} -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:255013} -2016-05-03 10:02:55 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1865732}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1551318} -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1865732} -2016-05-03 10:02:55 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:02:55 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1865731} -2016-05-03 10:02:55 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:02:55 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:02:55 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:02:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:02:56 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:02:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:02:56 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:02:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:56 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:02:56 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:02:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:02:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:02:56 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:02:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:02:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:02:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:02:56 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:02:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:02:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:02:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:02:56 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:02:56 DEBUG Operation:173 - get(String) - start -2016-05-03 10:02:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:02:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:02:56 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:02:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:02:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@99546abb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6bf2dee3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@36184951, socketFactory=javax.net.DefaultSocketFactory@74494718, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:02:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:02:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1865733}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1461671, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:02:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:255015}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2137536}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2159623, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1102519, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1551320}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1687153, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1865734}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:02:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:02:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:02:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG query:56 - Query completed -2016-05-03 10:02:56 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:02:56 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:02:56 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:02:56 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG update:56 - Update completed -2016-05-03 10:02:56 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1865734}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG query:56 - Query completed -2016-05-03 10:02:56 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:02:56 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:02:56 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:02:56 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:02:56 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:02:56 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:02:56 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:02:56 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:02:56 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:02:56 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:02:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:02:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:02:56 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:02:56 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:02:56 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:02:56 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:02:56 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:02:56 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:02:56 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:02:56 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:02:56 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:02:56 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:02:56 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:02:56 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:02:56 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:02:56 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:56 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:56 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@99546abb, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@6bf2dee3, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@36184951, socketFactory=javax.net.DefaultSocketFactory@74494718, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:02:56 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:02:56 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1865735}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:255016}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1331761, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1191798, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:56 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:02:56 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:56 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:02:56 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2137537}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=928552, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1551321}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1144088, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:02:56 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:02:56 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1865736}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865736}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865736}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865736}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:02:56 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:02:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865736}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865736}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG command:56 - Command execution completed -2016-05-03 10:02:56 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:02:56 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1865736}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:02:56 DEBUG query:56 - Query completed -2016-05-03 10:02:56 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:02:56 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2137537} -2016-05-03 10:02:56 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:255016} -2016-05-03 10:02:56 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1551321} -2016-05-03 10:02:56 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1865736}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:02:56 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1865736} -2016-05-03 10:02:56 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:02:56 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1865735} -2016-05-03 10:02:56 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:02:56 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:02:56 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:02:56 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:02:56 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:02:56 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:02:56 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:02:56 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:03:06 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:03:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:06 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:03:06 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:03:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:06 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:03:06 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:16 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:03:16 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:03:16 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:03:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:16 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:03:16 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:26 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:03:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:26 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:03:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:26 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:03:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:03:26 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:03:26 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=4.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:03:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:03:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:03:56 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 10:03:56 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 10:03:56 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 10:03:56 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:03:56 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:03:56 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:03:56 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:03:56 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@4677e6d8 -2016-05-03 10:03:56 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:03:56 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:03:56 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:03:56 DEBUG TemplateModel:83 - 2016-05-03 10:03:56, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:03:56 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:03:56 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 10:03:58 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:03:58 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:03:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:03:58 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:03:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:03:58 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:03:58 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:03:58 DEBUG TemplateModel:83 - 2016-05-03 10:03:58, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:03:58 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:03:58 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:03:58 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 135 ms -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 10:03:58 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 10:03:58 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 10:03:58 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:03:58 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:03:58 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@651b48ea -2016-05-03 10:03:58 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@64e8fbf6 -2016-05-03 10:03:58 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@1fed8924 -2016-05-03 10:03:58 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@39b233b6 -2016-05-03 10:03:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 114 ms -2016-05-03 10:03:59 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 10:03:59 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 10:03:59 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 10:03:59 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 10:03:59 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 10:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:03:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:03:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 10:03:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 18 ms -2016-05-03 10:03:59 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 10:03:59 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:03:59 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 10:03:59 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:03:59 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:03:59 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:03:59 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:03:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:03:59 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:03:59 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 10:03:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:03:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:03:59 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 10:03:59 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 10:03:59 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 10:03:59 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 10:03:59 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 10:03:59 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 10:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 10:03:59 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:03:59 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 10:03:59 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-03 10:03:59 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 10:03:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:03:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:03:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:03:59 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 10:03:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:03:59 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 10:04:00 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:04:00 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 10:04:00 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:04:00 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:04:00 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 10:04:00 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:04:00 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:04:00 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:00 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 10:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:00 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 10:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:00 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 10:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:00 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 10:04:00 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:00 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:01 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:04:01 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:04:01 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:04:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:04:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:04:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:01 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 10:04:01 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:04:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:04:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:02 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 10:04:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:02 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 10:04:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:02 INFO WorkspaceExplorerServiceImpl:188 - end time - 122 msc 0 sec -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:02 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 10:04:02 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 10:04:02 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:02 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:02 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:04:02 INFO WorkspaceExplorerServiceImpl:188 - end time - 127 msc 0 sec -2016-05-03 10:04:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:04:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:04:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:04:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:04:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 10:04:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 24 ms -2016-05-03 10:04:02 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 10:04:02 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 10:04:02 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 10:04:02 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:04:02 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:04:02 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:04:02 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:04:02 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:04:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:04:02 INFO WorkspaceExplorerServiceImpl:188 - end time - 374 msc 0 sec -2016-05-03 10:04:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:04:05 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:04:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:04:05 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 10:04:05 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:04:05 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:04:05 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 10:04:05 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 10:04:05 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 10:04:05 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 10:04:05 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 10:04:05 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 10:04:05 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:04:05 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:04:05 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:04:05 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:04:05 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:04:05 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:04:05 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:04:05 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:04:05 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:04:05 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:04:05 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:04:05 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:04:05 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:04:05 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:04:05 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:04:05 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:04:05 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:04:05 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:04:05 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:04:05 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:04:05 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:04:05 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:04:05 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:04:05 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:04:05 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:04:05 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:04:05 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:04:05 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:04:05 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:04:05 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:04:05 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:04:05 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:04:05 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 10:04:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:04:05 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:04:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:04:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:04:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:04:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:04:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:05 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:05 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:04:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:04:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:04:06 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:04:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:04:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:06 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:04:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:06 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:04:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:06 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:04:06 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:04:06 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:04:06 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:04:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:04:06 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:04:06 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:04:06 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:04:06 INFO WorkspaceExplorerServiceImpl:142 - end time - 210 msc 0 sec -2016-05-03 10:04:06 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:04:12 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:04:12 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:04:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:04:12 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:04:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:04:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:12 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:04:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:04:12 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:04:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:04:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:12 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:04:12 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:04:12 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:04:12 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:04:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:04:12 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:04:12 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:04:12 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:04:12 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:04:12 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:04:12 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:04:12 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:04:12 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:04:12 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:04:12 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:04:12 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:04:12 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:04:12 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:04:12 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:04:12 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:12 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:04:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:12 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:04:12 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:12 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:12 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:12 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:12 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:12 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:12 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:12 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:04:12 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:04:12 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:04:12 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:12 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:04:12 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:12 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:04:12 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:04:12 INFO WorkspaceExplorerServiceImpl:188 - end time - 55 msc 0 sec -2016-05-03 10:04:12 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:04:12 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:04:12 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:04:12 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:04:12 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1865749}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1543004, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:12 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:04:12 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:12 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:12 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:12 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2137550}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1150956, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:12 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1551333}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1888549, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 10:04:12 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1865750}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865750}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG command:56 - Command execution completed -2016-05-03 10:04:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865750}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG command:56 - Command execution completed -2016-05-03 10:04:12 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865750}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG command:56 - Command execution completed -2016-05-03 10:04:12 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:04:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865750}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG command:56 - Command execution completed -2016-05-03 10:04:12 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865750}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG command:56 - Command execution completed -2016-05-03 10:04:12 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1865750}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:255030}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:12 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2410081, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 10:04:13 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:04:13 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:04:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:04:13 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:04:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:04:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:13 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:04:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:13 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:04:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:13 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:13 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:13 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:13 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:13 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:13 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:13 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:04:13 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:04:13 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:04:13 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:04:13 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:04:13 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:04:13 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:04:13 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:04:13 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:04:13 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:04:13 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:04:13 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:04:13 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:04:13 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:04:13 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:04:13 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:04:13 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:04:13 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:04:13 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:04:13 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:13 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:13 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:13 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:04:13 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:04:13 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:04:13 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1865751}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:255031}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1212535, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:13 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:04:13 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:13 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1675072, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:13 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:13 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:13 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:13 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2137553}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1207157, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:13 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:13 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1551336}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1567242, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:13 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:04:13 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1865752}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG command:56 - Command execution completed -2016-05-03 10:04:13 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG command:56 - Command execution completed -2016-05-03 10:04:13 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG command:56 - Command execution completed -2016-05-03 10:04:13 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:04:13 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG command:56 - Command execution completed -2016-05-03 10:04:13 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG command:56 - Command execution completed -2016-05-03 10:04:13 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1865752}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:13 DEBUG query:56 - Query completed -2016-05-03 10:04:13 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:04:13 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2137550} -2016-05-03 10:04:13 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:255030} -2016-05-03 10:04:13 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1551333} -2016-05-03 10:04:13 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1865750}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:04:13 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1865750} -2016-05-03 10:04:13 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1865749} -2016-05-03 10:04:13 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:04:13 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:04:13 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:04:13 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:04:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:14 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:04:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:04:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:04:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:04:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:14 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:04:14 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:04:14 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:04:14 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:04:14 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-03 10:04:14 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:04:14 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:04:14 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:04:14 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:04:14 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:04:14 DEBUG query:56 - Query completed -2016-05-03 10:04:14 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:04:14 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2137553} -2016-05-03 10:04:14 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:255031} -2016-05-03 10:04:14 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1865752}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:04:14 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1551336} -2016-05-03 10:04:14 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1865752} -2016-05-03 10:04:14 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:04:14 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:04:14 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1865751} -2016-05-03 10:04:14 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:04:14 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:04:18 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:04:19 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:04:18 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:04:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:04:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:18 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:04:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:04:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:04:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:04:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:04:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:04:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:04:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:04:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:04:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:04:19 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:04:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:04:19 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:04:19 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:04:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:04:19 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:04:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:04:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:04:19 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:04:19 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:04:19 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:04:19 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:04:19 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:04:19 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:04:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:04:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:04:19 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:04:19 DEBUG Operation:173 - get(String) - start -2016-05-03 10:04:19 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:04:19 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:04:19 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:04:19 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:04:19 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:19 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:19 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:04:19 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:04:19 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:255033}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1116012, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:19 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:04:19 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:19 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2137554}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=896028, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1865754}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1336268, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:19 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1551338}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1127133, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1865755}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:04:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:04:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:04:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG query:56 - Query completed -2016-05-03 10:04:19 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:04:19 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:04:19 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:04:19 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG update:56 - Update completed -2016-05-03 10:04:19 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1865755}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG query:56 - Query completed -2016-05-03 10:04:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:19 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:04:19 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:04:19 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:04:19 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:04:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:04:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:04:19 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:04:19 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:04:19 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:04:19 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:04:19 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:04:19 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:04:19 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:04:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:04:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:04:19 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:04:19 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:04:19 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:04:19 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:04:19 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:19 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:19 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:04:19 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:04:19 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:255034}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1213191, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:19 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:04:19 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:19 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1865756}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1073115, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:19 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2137555}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=728575, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1551339}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1126878, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:04:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:04:19 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1865757}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865757}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865757}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865757}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:04:19 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:04:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865757}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865757}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG command:56 - Command execution completed -2016-05-03 10:04:19 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:04:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1865757}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:19 DEBUG query:56 - Query completed -2016-05-03 10:04:19 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:04:19 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2137555} -2016-05-03 10:04:19 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:255034} -2016-05-03 10:04:19 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1551339} -2016-05-03 10:04:19 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1865757}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:04:19 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1865757} -2016-05-03 10:04:19 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:04:19 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1865756} -2016-05-03 10:04:19 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:04:20 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:04:20 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:04:20 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:04:20 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:04:20 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:04:20 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:04:20 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:04:20 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:04:20 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:20 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:04:29 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:04:29 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:29 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:04:30 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:04:30 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:30 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:04:39 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:04:39 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:39 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:04:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:04:40 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:04:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:04:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}] -2016-05-03 10:04:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:04:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 10:04:50 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:04:50 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:04:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 10:04:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 10:04:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:51 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:04:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:04:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:59 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:04:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:59 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:04:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:04:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:04:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:04:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:04:59 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:04:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:04:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:04:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:04:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:04:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:04:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:04:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:59 INFO connection:71 - Closed connection [connectionId{localValue:15, serverValue:1865755}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:04:59 DEBUG connection:56 - Closing connection connectionId{localValue:15, serverValue:1865755} -2016-05-03 10:04:59 DEBUG connection:56 - Closing connection connectionId{localValue:14, serverValue:2137554} -2016-05-03 10:04:59 DEBUG connection:56 - Closing connection connectionId{localValue:11, serverValue:255033} -2016-05-03 10:04:59 DEBUG connection:56 - Closing connection connectionId{localValue:13, serverValue:1551338} -2016-05-03 10:04:59 DEBUG connection:56 - Closing connection connectionId{localValue:12, serverValue:1865754} -2016-05-03 10:04:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:04:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:04:59 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:04:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:59 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:04:59 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:04:59 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:04:59 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:04:59 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:04:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:04:59 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:04:59 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:04:59 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:04:59 INFO WorkspaceExplorerServiceImpl:142 - end time - 172 msc 0 sec -2016-05-03 10:04:59 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:04 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:04 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:05:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:04 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:05:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:05:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:05:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:05:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:05:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:05:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 178 msc 0 sec -2016-05-03 10:05:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:05:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:05:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:05:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:05:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:05:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:05:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:05:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:05:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 162 msc 0 sec -2016-05-03 10:05:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:07 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:05:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:08 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:05:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:08 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:05:09 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:05:09 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:05:09 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:05:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:09 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:05:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:09 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:05:09 INFO WorkspaceExplorerServiceImpl:142 - end time - 165 msc 0 sec -2016-05-03 10:05:09 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:05:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:05:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:05:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:17 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:17 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:05:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:05:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:05:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:05:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:05:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:05:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 145 msc 0 sec -2016-05-03 10:05:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:05:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:18 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:05:18 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:05:18 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:05:18 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:05:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:18 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:05:18 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:18 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:05:18 INFO WorkspaceExplorerServiceImpl:142 - end time - 153 msc 0 sec -2016-05-03 10:05:18 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:05:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:05:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:05:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:05:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:05:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:05:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 160 msc 0 sec -2016-05-03 10:05:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:19 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:05:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:05:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:05:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:05:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:05:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:05:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 148 msc 0 sec -2016-05-03 10:05:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:05:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:30 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:30 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:30 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:05:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:05:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:30 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:30 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:30 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:30 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:30 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:30 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:30 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:30 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:30 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:30 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:05:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:05:31 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:05:31 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:05:31 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:05:31 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:05:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:31 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:05:31 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:05:31 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:05:31 INFO WorkspaceExplorerServiceImpl:142 - end time - 154 msc 0 sec -2016-05-03 10:05:31 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:05:40 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:40 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:40 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:40 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:40 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:40 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:05:40 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:05:40 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:40 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:40 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:05:40 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:05:40 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:05:40 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:05:40 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:05:40 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:05:40 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:05:40 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:40 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:40 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:05:40 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:05:40 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:05:40 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:05:40 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:40 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:40 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:40 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:05:40 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:05:40 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:05:40 INFO connection:71 - Opened connection [connectionId{localValue:21, serverValue:255048}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1598337, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:40 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:05:40 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:40 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:40 INFO connection:71 - Opened connection [connectionId{localValue:22, serverValue:1865771}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1431384, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:40 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:40 INFO connection:71 - Opened connection [connectionId{localValue:24, serverValue:2137569}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1134715, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:40 INFO connection:71 - Opened connection [connectionId{localValue:23, serverValue:1551351}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3894590, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:40 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}] -2016-05-03 10:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:40 INFO connection:71 - Opened connection [connectionId{localValue:25, serverValue:1865772}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:40 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:40 DEBUG command:56 - Command execution completed -2016-05-03 10:05:40 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG command:56 - Command execution completed -2016-05-03 10:05:40 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG command:56 - Command execution completed -2016-05-03 10:05:40 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:05:40 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG command:56 - Command execution completed -2016-05-03 10:05:40 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:25, serverValue:1865772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 DEBUG command:56 - Command execution completed -2016-05-03 10:05:40 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:25, serverValue:1865772}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:40 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:41 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:05:41 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:05:41 INFO WorkspaceExplorerServiceImpl:188 - end time - 43 msc 0 sec -2016-05-03 10:05:41 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:05:41 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:05:41 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:05:41 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:41 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.9 ms, state=CONNECTED}] -2016-05-03 10:05:41 DEBUG query:56 - Query completed -2016-05-03 10:05:41 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:05:41 DEBUG connection:56 - Closing connection connectionId{localValue:24, serverValue:2137569} -2016-05-03 10:05:41 DEBUG connection:56 - Closing connection connectionId{localValue:21, serverValue:255048} -2016-05-03 10:05:41 DEBUG connection:56 - Closing connection connectionId{localValue:23, serverValue:1551351} -2016-05-03 10:05:41 INFO connection:71 - Closed connection [connectionId{localValue:25, serverValue:1865772}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:05:41 DEBUG connection:56 - Closing connection connectionId{localValue:25, serverValue:1865772} -2016-05-03 10:05:41 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:05:41 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:05:41 DEBUG connection:56 - Closing connection connectionId{localValue:22, serverValue:1865771} -2016-05-03 10:05:41 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:05:41 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:05:42 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:42 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:42 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:42 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:42 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:42 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:05:42 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:05:42 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:42 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:42 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:05:42 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:05:42 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:05:42 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:05:42 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:05:42 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:05:42 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:05:42 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:42 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:42 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:05:42 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:05:42 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:05:42 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:05:42 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:42 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:42 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:42 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:05:42 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:05:42 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:05:42 INFO connection:71 - Opened connection [connectionId{localValue:27, serverValue:1865773}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:42 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1115869, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:42 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:05:42 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:42 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:42 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:42 INFO connection:71 - Opened connection [connectionId{localValue:29, serverValue:2137570}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:42 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1066982, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:42 INFO connection:71 - Opened connection [connectionId{localValue:26, serverValue:255049}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:42 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1429133, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:42 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:42 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:42 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:42 INFO connection:71 - Opened connection [connectionId{localValue:28, serverValue:1551352}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:42 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:42 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1148326, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:42 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:05:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:42 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:42 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:05:42 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:05:42 INFO WorkspaceExplorerServiceImpl:188 - end time - 41 msc 0 sec -2016-05-03 10:05:42 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:42 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:05:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:05:42 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:05:42 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:05:43 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:43 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:43 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:43 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:43 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:43 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:43 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:43 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:43 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:43 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:43 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:05:43 INFO connection:71 - Opened connection [connectionId{localValue:30, serverValue:1865775}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865775}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:43 DEBUG command:56 - Command execution completed -2016-05-03 10:05:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865775}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:43 DEBUG command:56 - Command execution completed -2016-05-03 10:05:43 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865775}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:43 DEBUG command:56 - Command execution completed -2016-05-03 10:05:43 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:05:43 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865775}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:43 DEBUG command:56 - Command execution completed -2016-05-03 10:05:43 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:30, serverValue:1865775}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:43 DEBUG command:56 - Command execution completed -2016-05-03 10:05:43 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:30, serverValue:1865775}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:44 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:44 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:05:44 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:05:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:44 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:44 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:05:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:44 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:44 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:05:44 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:05:44 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:05:44 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:05:44 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:05:44 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:05:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:44 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:44 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:05:44 DEBUG Operation:173 - get(String) - start -2016-05-03 10:05:44 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:05:44 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:05:44 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:05:44 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:05:44 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:44 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:44 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:05:44 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:05:44 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:05:44 DEBUG query:56 - Query completed -2016-05-03 10:05:44 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:29, serverValue:2137570} -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:26, serverValue:255049} -2016-05-03 10:05:44 INFO connection:71 - Closed connection [connectionId{localValue:30, serverValue:1865775}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:28, serverValue:1551352} -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:30, serverValue:1865775} -2016-05-03 10:05:44 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:27, serverValue:1865773} -2016-05-03 10:05:44 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:05:44 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:05:44 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:31, serverValue:255051}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1276089, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:44 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:05:44 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:44 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:34, serverValue:2137573}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=871021, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:32, serverValue:1865776}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1281063, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:44 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:33, serverValue:1551356}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1570334, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:35, serverValue:1865777}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:05:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:05:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:05:44 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG query:56 - Query completed -2016-05-03 10:05:44 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:05:44 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:05:44 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:05:44 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG update:56 - Update completed -2016-05-03 10:05:44 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:35, serverValue:1865777}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG query:56 - Query completed -2016-05-03 10:05:44 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:44 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:44 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:44 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:44 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:44 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:44 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:44 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:05:44 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:05:44 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:05:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:44 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:44 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:05:44 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:05:44 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:05:44 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:05:44 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:05:44 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:05:44 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:05:44 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:44 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:44 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:05:44 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:05:44 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:05:44 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:05:44 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:44 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:44 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:05:44 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:05:44 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:36, serverValue:255052}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:37, serverValue:1865778}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1314271, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:44 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:05:44 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:44 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1566465, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:44 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:39, serverValue:2137574}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=932983, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:38, serverValue:1551357}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1192049, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:05:44 INFO connection:71 - Opened connection [connectionId{localValue:40, serverValue:1865779}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:05:44 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:05:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:40, serverValue:1865779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG command:56 - Command execution completed -2016-05-03 10:05:44 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:05:44 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:40, serverValue:1865779}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG query:56 - Query completed -2016-05-03 10:05:44 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:39, serverValue:2137574} -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:36, serverValue:255052} -2016-05-03 10:05:44 INFO connection:71 - Closed connection [connectionId{localValue:40, serverValue:1865779}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:40, serverValue:1865779} -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:38, serverValue:1551357} -2016-05-03 10:05:44 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:05:44 DEBUG connection:56 - Closing connection connectionId{localValue:37, serverValue:1865778} -2016-05-03 10:05:44 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:05:44 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:05:44 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:05:44 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:05:44 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:05:44 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:05:44 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:05:44 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:05:44 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:44 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}] -2016-05-03 10:05:46 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:46 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:49 DEBUG connection:56 - Closing connection connectionId{localValue:34, serverValue:2137573} -2016-05-03 10:05:49 DEBUG connection:56 - Closing connection connectionId{localValue:31, serverValue:255051} -2016-05-03 10:05:49 DEBUG connection:56 - Closing connection connectionId{localValue:33, serverValue:1551356} -2016-05-03 10:05:49 INFO connection:71 - Closed connection [connectionId{localValue:35, serverValue:1865777}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:05:49 DEBUG connection:56 - Closing connection connectionId{localValue:35, serverValue:1865777} -2016-05-03 10:05:49 DEBUG connection:56 - Closing connection connectionId{localValue:32, serverValue:1865776} -2016-05-03 10:05:57 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:57 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:57 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:05:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:05:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:57 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:57 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:05:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:05:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:57 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:05:57 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:05:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:57 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:57 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:05:57 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:05:57 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:05:57 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:05:57 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:05:57 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:05:57 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:05:57 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:57 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:57 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:05:57 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:05:57 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:05:57 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:05:57 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:57 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:57 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:57 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:05:57 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:05:57 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:05:57 INFO connection:71 - Opened connection [connectionId{localValue:41, serverValue:255055}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1077080, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:57 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:05:57 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:57 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:57 INFO connection:71 - Opened connection [connectionId{localValue:44, serverValue:2137576}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=879172, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:57 INFO connection:71 - Opened connection [connectionId{localValue:42, serverValue:1865783}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1224730, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:57 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:57 INFO connection:71 - Opened connection [connectionId{localValue:43, serverValue:1551359}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1218241, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:05:57 INFO connection:71 - Opened connection [connectionId{localValue:45, serverValue:1865784}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1865784}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG command:56 - Command execution completed -2016-05-03 10:05:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1865784}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG command:56 - Command execution completed -2016-05-03 10:05:57 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1865784}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG command:56 - Command execution completed -2016-05-03 10:05:57 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:05:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1865784}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG command:56 - Command execution completed -2016-05-03 10:05:57 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:45, serverValue:1865784}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG command:56 - Command execution completed -2016-05-03 10:05:57 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:45, serverValue:1865784}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:57 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:57 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:57 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:57 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:57 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:57 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:57 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:57 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:57 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:57 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:57 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:05:57 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:05:57 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-03 10:05:57 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:05:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:05:57 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:05:57 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:05:57 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:57 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:05:57 DEBUG query:56 - Query completed -2016-05-03 10:05:57 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:05:57 DEBUG connection:56 - Closing connection connectionId{localValue:44, serverValue:2137576} -2016-05-03 10:05:57 DEBUG connection:56 - Closing connection connectionId{localValue:41, serverValue:255055} -2016-05-03 10:05:57 INFO connection:71 - Closed connection [connectionId{localValue:45, serverValue:1865784}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:05:57 DEBUG connection:56 - Closing connection connectionId{localValue:43, serverValue:1551359} -2016-05-03 10:05:57 DEBUG connection:56 - Closing connection connectionId{localValue:45, serverValue:1865784} -2016-05-03 10:05:57 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:05:57 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:05:57 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:05:57 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:05:57 DEBUG connection:56 - Closing connection connectionId{localValue:42, serverValue:1865783} -2016-05-03 10:05:58 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:58 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:58 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:05:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:05:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:58 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:58 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:58 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:05:58 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:05:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:58 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:58 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:05:58 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:05:58 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:05:58 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:05:58 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:05:58 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:05:58 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:05:58 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:05:58 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:05:58 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:05:58 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:05:58 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:05:58 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:05:58 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:58 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:58 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:58 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:05:58 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:05:58 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:05:58 INFO connection:71 - Opened connection [connectionId{localValue:46, serverValue:255056}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1649992, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:58 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:05:58 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:58 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:05:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:58 INFO connection:71 - Opened connection [connectionId{localValue:49, serverValue:2137577}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=833911, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:58 INFO connection:71 - Opened connection [connectionId{localValue:47, serverValue:1865785}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1188306, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:58 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:05:58 INFO connection:71 - Opened connection [connectionId{localValue:48, serverValue:1551361}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1271219, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:05:58 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:05:58 INFO connection:71 - Opened connection [connectionId{localValue:50, serverValue:1865786}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1865786}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG command:56 - Command execution completed -2016-05-03 10:05:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1865786}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG command:56 - Command execution completed -2016-05-03 10:05:58 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1865786}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG command:56 - Command execution completed -2016-05-03 10:05:58 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:05:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1865786}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:58 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:58 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:58 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:58 DEBUG command:56 - Command execution completed -2016-05-03 10:05:58 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:58 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:58 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:58 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:58 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:50, serverValue:1865786}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 DEBUG command:56 - Command execution completed -2016-05-03 10:05:58 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:50, serverValue:1865786}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:05:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:58 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:05:58 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:05:58 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:05:58 INFO WorkspaceExplorerServiceImpl:188 - end time - 56 msc 0 sec -2016-05-03 10:05:58 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:05:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:05:58 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:05:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:05:58 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:05:59 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:05:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:05:59 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:05:59 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:05:59 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:59 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:59 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:05:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:05:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:59 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:59 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:05:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:05:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:59 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:59 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:05:59 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:05:59 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:05:59 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:05:59 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:05:59 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:05:59 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:05:59 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:05:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:59 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:05:59 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:05:59 DEBUG query:56 - Query completed -2016-05-03 10:05:59 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:05:59 DEBUG connection:56 - Closing connection connectionId{localValue:49, serverValue:2137577} -2016-05-03 10:05:59 INFO connection:71 - Closed connection [connectionId{localValue:50, serverValue:1865786}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:05:59 DEBUG connection:56 - Closing connection connectionId{localValue:50, serverValue:1865786} -2016-05-03 10:05:59 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:05:59 DEBUG connection:56 - Closing connection connectionId{localValue:47, serverValue:1865785} -2016-05-03 10:05:59 DEBUG connection:56 - Closing connection connectionId{localValue:48, serverValue:1551361} -2016-05-03 10:05:59 DEBUG connection:56 - Closing connection connectionId{localValue:46, serverValue:255056} -2016-05-03 10:05:59 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:05:59 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:05:59 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:06:00 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:06:00 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:06:00 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:06:00 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:06:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:06:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:06:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:06:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:06:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:06:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:06:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:06:00 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:06:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:06:00 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:06:00 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:06:00 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:06:00 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:06:00 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:06:00 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:06:00 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:06:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:06:00 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:06:00 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:06:00 DEBUG Operation:173 - get(String) - start -2016-05-03 10:06:00 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:06:00 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:06:00 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:06:00 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:06:00 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:06:00 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:06:00 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:06:00 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:06:00 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:52, serverValue:1865787}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1134195, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:06:00 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:06:00 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:06:00 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:06:00 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:54, serverValue:2137578}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=865279, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:51, serverValue:255057}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=924758, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:53, serverValue:1551362}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1259100, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:55, serverValue:1865788}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:06:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:06:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:06:00 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG query:56 - Query completed -2016-05-03 10:06:00 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:06:00 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:06:00 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:06:00 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG update:56 - Update completed -2016-05-03 10:06:00 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:55, serverValue:1865788}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG query:56 - Query completed -2016-05-03 10:06:00 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:06:00 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:06:00 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:06:00 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:06:00 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:06:00 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:06:00 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:06:00 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:06:00 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:06:00 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:06:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:06:00 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:06:00 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:06:00 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:06:00 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:06:00 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:06:00 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:06:00 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:06:00 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:06:00 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:06:00 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:06:00 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:06:00 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:06:00 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:06:00 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:06:00 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:06:00 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:06:00 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:06:00 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:06:00 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:57, serverValue:1865789}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1747103, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:06:00 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:06:00 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:06:00 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:06:00 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:56, serverValue:255058}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:06:00 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:59, serverValue:2137579}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2744655, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:06:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1127460, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:60, serverValue:1865790}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO connection:71 - Opened connection [connectionId{localValue:58, serverValue:1551363}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1865790}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1107805, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:06:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1865790}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1865790}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:06:00 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:06:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1865790}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:60, serverValue:1865790}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG command:56 - Command execution completed -2016-05-03 10:06:00 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:06:00 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:60, serverValue:1865790}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:06:00 DEBUG query:56 - Query completed -2016-05-03 10:06:00 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:06:00 DEBUG connection:56 - Closing connection connectionId{localValue:59, serverValue:2137579} -2016-05-03 10:06:00 INFO connection:71 - Closed connection [connectionId{localValue:60, serverValue:1865790}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:06:00 DEBUG connection:56 - Closing connection connectionId{localValue:58, serverValue:1551363} -2016-05-03 10:06:00 DEBUG connection:56 - Closing connection connectionId{localValue:56, serverValue:255058} -2016-05-03 10:06:00 DEBUG connection:56 - Closing connection connectionId{localValue:60, serverValue:1865790} -2016-05-03 10:06:00 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:06:00 DEBUG connection:56 - Closing connection connectionId{localValue:57, serverValue:1865789} -2016-05-03 10:06:00 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:06:00 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:06:00 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:06:00 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:06:00 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:06:00 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:06:00 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:06:00 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:06:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:06:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:06:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:06:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:06:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:06:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:06:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:06:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:06:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:06:03 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:06:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:06:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:06:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:06:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:06:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:06:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:06:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:06:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:06:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:06:03 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:06:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:06:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:06:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:06:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:06:04 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:06:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:06:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:06:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:06:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:06:04 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:06:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:06:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:06:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:06:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:06:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:06:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:06:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:06:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:06:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:06:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:06:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:06:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:06:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:06:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:06:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:06:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:06:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:06:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:06:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:06:04 DEBUG connection:56 - Closing connection connectionId{localValue:53, serverValue:1551362} -2016-05-03 10:06:04 DEBUG connection:56 - Closing connection connectionId{localValue:54, serverValue:2137578} -2016-05-03 10:06:04 INFO connection:71 - Closed connection [connectionId{localValue:55, serverValue:1865788}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:06:04 DEBUG connection:56 - Closing connection connectionId{localValue:55, serverValue:1865788} -2016-05-03 10:06:04 DEBUG connection:56 - Closing connection connectionId{localValue:51, serverValue:255057} -2016-05-03 10:06:04 DEBUG connection:56 - Closing connection connectionId{localValue:52, serverValue:1865787} -2016-05-03 10:06:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:06:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:06:04 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:06:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:06:04 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:06:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:06:04 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:06:04 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:06:04 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:06:04 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:06:04 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:06:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:06:04 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:06:04 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:06:04 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:06:04 INFO WorkspaceExplorerServiceImpl:142 - end time - 149 msc 0 sec -2016-05-03 10:06:04 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:06:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:06:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:07:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:07:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:17 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:17 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:17 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:17 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:17 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:17 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:17 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:17 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:17 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:17 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:17 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:17 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:08:17 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:08:17 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:08:17 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:08:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:17 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:08:17 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:17 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:08:17 INFO WorkspaceExplorerServiceImpl:142 - end time - 136 msc 0 sec -2016-05-03 10:08:17 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:18 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:18 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:18 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:08:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:18 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:18 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:08:19 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:19 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:19 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:08:19 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:08:19 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:08:19 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:08:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:19 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:08:19 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:19 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:08:19 INFO WorkspaceExplorerServiceImpl:142 - end time - 147 msc 0 sec -2016-05-03 10:08:19 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:20 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:20 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:20 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:20 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:20 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:20 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:20 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:20 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:20 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:20 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:08:20 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:08:20 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:08:20 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:08:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:20 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:08:20 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:20 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:08:20 INFO WorkspaceExplorerServiceImpl:142 - end time - 179 msc 0 sec -2016-05-03 10:08:20 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:08:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:21 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:21 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:21 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:21 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:30 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:30 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:08:30 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:08:30 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 10:08:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:31 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:08:31 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:08:31 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:08:31 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 10:08:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:31 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:08:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:08:31 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 10:08:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:31 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:08:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 10:08:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:31 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:31 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:31 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:31 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:31 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:31 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:31 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:08:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 10:08:31 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:31 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:08:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 10:08:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:32 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:08:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 10:08:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:32 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:32 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 10:08:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:32 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 10:08:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:32 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:08:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:32 INFO WorkspaceExplorerServiceImpl:188 - end time - 86 msc 0 sec -2016-05-03 10:08:32 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 10:08:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:32 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 10:08:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:32 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:32 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 10:08:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:32 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 10:08:32 INFO WorkspaceExplorerServiceImpl:188 - end time - 141 msc 0 sec -2016-05-03 10:08:32 INFO WorkspaceExplorerServiceImpl:188 - end time - 86 msc 0 sec -2016-05-03 10:08:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:08:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:08:38 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 10:08:38 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:08:38 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:08:38 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:08:38 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:08:38 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:08:38 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:08:38 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:08:38 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:08:38 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:08:38 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:08:38 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:08:38 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:08:38 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:08:38 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:08:38 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:08:38 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:08:38 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:08:38 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:08:38 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:08:38 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:08:38 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:08:38 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:08:38 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:08:38 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:08:38 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:08:38 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:08:38 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:08:38 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:08:38 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:08:38 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:08:38 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:08:38 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:39 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:08:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:08:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:08:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:08:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:08:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:08:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:08:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 138 msc 0 sec -2016-05-03 10:08:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:41 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:41 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:08:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:41 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:41 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:08:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:41 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:41 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:41 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:41 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:41 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:41 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:41 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:41 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:08:41 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:08:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:41 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:08:41 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:08:41 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:08:41 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:08:41 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:08:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:41 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:08:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:08:41 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:08:41 INFO WorkspaceExplorerServiceImpl:142 - end time - 140 msc 0 sec -2016-05-03 10:08:41 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:08:50 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:08:50 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:08:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:08:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:50 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:08:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:50 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:08:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:08:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:08:50 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:08:50 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:08:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:08:50 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:08:50 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:08:50 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:08:50 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:08:50 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:08:50 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:08:50 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:08:50 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:08:50 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:08:50 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:08:50 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:08:50 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:08:50 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:08:50 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:08:50 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:50 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:50 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:50 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:08:50 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:08:50 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:08:50 INFO connection:71 - Opened connection [connectionId{localValue:61, serverValue:255088}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=3345524, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:50 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:08:50 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:50 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:50 INFO connection:71 - Opened connection [connectionId{localValue:64, serverValue:2137609}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=776277, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:50 INFO connection:71 - Opened connection [connectionId{localValue:62, serverValue:1865819}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1577475, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:08:50 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:50 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:08:50 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:08:50 INFO connection:71 - Opened connection [connectionId{localValue:63, serverValue:1551393}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1312267, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:50 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:08:50 INFO connection:71 - Opened connection [connectionId{localValue:65, serverValue:1865820}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1865820}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG command:56 - Command execution completed -2016-05-03 10:08:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1865820}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG command:56 - Command execution completed -2016-05-03 10:08:50 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1865820}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG command:56 - Command execution completed -2016-05-03 10:08:50 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:08:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1865820}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 DEBUG command:56 - Command execution completed -2016-05-03 10:08:50 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:65, serverValue:1865820}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:08:50 DEBUG command:56 - Command execution completed -2016-05-03 10:08:50 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:65, serverValue:1865820}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:50 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:08:50 INFO WorkspaceExplorerServiceImpl:188 - end time - 45 msc 0 sec -2016-05-03 10:08:50 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:08:50 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:08:50 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:08:51 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:08:51 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:08:51 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:08:51 DEBUG query:56 - Query completed -2016-05-03 10:08:51 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:08:51 DEBUG connection:56 - Closing connection connectionId{localValue:64, serverValue:2137609} -2016-05-03 10:08:51 DEBUG connection:56 - Closing connection connectionId{localValue:61, serverValue:255088} -2016-05-03 10:08:51 INFO connection:71 - Closed connection [connectionId{localValue:65, serverValue:1865820}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:08:51 DEBUG connection:56 - Closing connection connectionId{localValue:65, serverValue:1865820} -2016-05-03 10:08:51 DEBUG connection:56 - Closing connection connectionId{localValue:63, serverValue:1551393} -2016-05-03 10:08:51 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:08:51 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:08:51 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:08:51 DEBUG connection:56 - Closing connection connectionId{localValue:62, serverValue:1865819} -2016-05-03 10:08:51 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:08:51 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:08:51 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:08:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:51 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:51 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:51 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:08:51 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:08:51 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:08:51 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:08:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:08:51 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:08:51 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:08:51 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:08:51 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:08:51 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:08:51 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:08:51 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:08:51 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:08:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:08:51 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:08:51 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:08:51 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:08:51 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:08:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:08:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:51 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:51 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:51 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:08:51 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:08:51 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:08:52 INFO connection:71 - Opened connection [connectionId{localValue:66, serverValue:255089}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 INFO connection:71 - Opened connection [connectionId{localValue:67, serverValue:1865821}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1145039, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:52 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:08:52 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:52 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1393431, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:52 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:52 INFO connection:71 - Opened connection [connectionId{localValue:69, serverValue:2137610}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=785248, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:52 INFO connection:71 - Opened connection [connectionId{localValue:68, serverValue:1551394}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:52 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:08:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1126435, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:08:52 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:08:52 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:08:52 INFO connection:71 - Opened connection [connectionId{localValue:70, serverValue:1865822}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1865822}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG command:56 - Command execution completed -2016-05-03 10:08:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1865822}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG command:56 - Command execution completed -2016-05-03 10:08:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1865822}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG command:56 - Command execution completed -2016-05-03 10:08:52 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:08:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1865822}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG command:56 - Command execution completed -2016-05-03 10:08:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:70, serverValue:1865822}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG command:56 - Command execution completed -2016-05-03 10:08:52 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:70, serverValue:1865822}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:08:52 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:08:52 INFO WorkspaceExplorerServiceImpl:188 - end time - 41 msc 0 sec -2016-05-03 10:08:52 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:08:52 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:08:52 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:08:52 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:08:52 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:08:52 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:08:52 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:08:52 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:52 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:08:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:52 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:52 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:08:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:52 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:52 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:08:52 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:08:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:52 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:08:52 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:08:52 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:08:52 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:08:52 DEBUG query:56 - Query completed -2016-05-03 10:08:52 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:08:52 DEBUG connection:56 - Closing connection connectionId{localValue:69, serverValue:2137610} -2016-05-03 10:08:52 DEBUG connection:56 - Closing connection connectionId{localValue:68, serverValue:1551394} -2016-05-03 10:08:52 DEBUG connection:56 - Closing connection connectionId{localValue:66, serverValue:255089} -2016-05-03 10:08:52 INFO connection:71 - Closed connection [connectionId{localValue:70, serverValue:1865822}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:08:52 DEBUG connection:56 - Closing connection connectionId{localValue:70, serverValue:1865822} -2016-05-03 10:08:52 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:08:52 DEBUG connection:56 - Closing connection connectionId{localValue:67, serverValue:1865821} -2016-05-03 10:08:52 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:08:52 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:08:52 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:08:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:08:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:08:53 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:08:53 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:08:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:53 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:08:53 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:08:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:08:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:08:53 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:08:53 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:08:53 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:08:53 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:08:53 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:08:53 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:08:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:08:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:08:53 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:08:53 DEBUG Operation:173 - get(String) - start -2016-05-03 10:08:53 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:08:53 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:08:53 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:08:53 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:08:53 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:53 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:53 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:08:53 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:08:53 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:71, serverValue:255090}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1175190, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:53 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:08:53 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:53 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:72, serverValue:1865825}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:74, serverValue:2137611}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=749146, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1249270, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:53 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:73, serverValue:1551395}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1941068, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:75, serverValue:1865826}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:08:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:08:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:08:53 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG query:56 - Query completed -2016-05-03 10:08:53 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:08:53 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:08:53 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:08:53 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG update:56 - Update completed -2016-05-03 10:08:53 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:75, serverValue:1865826}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG query:56 - Query completed -2016-05-03 10:08:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:08:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:08:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:08:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:08:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:08:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:08:53 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:08:53 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:08:53 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:08:53 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:08:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:08:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:08:53 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:08:53 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:08:53 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:08:53 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:08:53 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:08:53 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:08:53 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:08:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:08:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:08:53 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:08:53 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:08:53 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:08:53 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:08:53 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:53 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:53 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:08:53 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:08:53 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:76, serverValue:255091}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1480030, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:53 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:08:53 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:53 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:77, serverValue:1865827}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:53 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=883463, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:53 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:79, serverValue:2137612}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=837900, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:78, serverValue:1551396}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1178902, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:08:53 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:08:53 INFO connection:71 - Opened connection [connectionId{localValue:80, serverValue:1865828}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:80, serverValue:1865828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:80, serverValue:1865828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:80, serverValue:1865828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:08:53 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:08:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:80, serverValue:1865828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:80, serverValue:1865828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG command:56 - Command execution completed -2016-05-03 10:08:53 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:08:53 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:80, serverValue:1865828}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:08:53 DEBUG query:56 - Query completed -2016-05-03 10:08:53 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:08:53 DEBUG connection:56 - Closing connection connectionId{localValue:79, serverValue:2137612} -2016-05-03 10:08:53 DEBUG connection:56 - Closing connection connectionId{localValue:78, serverValue:1551396} -2016-05-03 10:08:53 INFO connection:71 - Closed connection [connectionId{localValue:80, serverValue:1865828}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:08:53 DEBUG connection:56 - Closing connection connectionId{localValue:76, serverValue:255091} -2016-05-03 10:08:53 DEBUG connection:56 - Closing connection connectionId{localValue:80, serverValue:1865828} -2016-05-03 10:08:53 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:08:53 DEBUG connection:56 - Closing connection connectionId{localValue:77, serverValue:1865827} -2016-05-03 10:08:53 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:08:53 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:08:53 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:08:53 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:08:53 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:08:53 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:08:53 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:08:53 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:08:54 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:08:54 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}] -2016-05-03 10:09:00 DEBUG connection:56 - Closing connection connectionId{localValue:74, serverValue:2137611} -2016-05-03 10:09:00 DEBUG connection:56 - Closing connection connectionId{localValue:71, serverValue:255090} -2016-05-03 10:09:00 DEBUG connection:56 - Closing connection connectionId{localValue:73, serverValue:1551395} -2016-05-03 10:09:00 INFO connection:71 - Closed connection [connectionId{localValue:75, serverValue:1865826}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:00 DEBUG connection:56 - Closing connection connectionId{localValue:75, serverValue:1865826} -2016-05-03 10:09:00 DEBUG connection:56 - Closing connection connectionId{localValue:72, serverValue:1865825} -2016-05-03 10:09:01 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:01 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:01 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:01 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:01 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:01 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:09:01 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:09:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:01 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:01 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:09:01 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:09:01 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:01 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:09:01 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:09:01 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:01 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:09:01 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:01 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:01 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:01 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:01 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:01 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:01 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:01 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:01 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:01 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:01 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:01 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:01 INFO connection:71 - Opened connection [connectionId{localValue:81, serverValue:255093}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1148408, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:01 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:01 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:01 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:01 INFO connection:71 - Opened connection [connectionId{localValue:84, serverValue:2137614}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=978928, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:01 INFO connection:71 - Opened connection [connectionId{localValue:82, serverValue:1865829}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1057449, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:01 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:01 INFO connection:71 - Opened connection [connectionId{localValue:83, serverValue:1551398}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1015979, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:01 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-03 10:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:01 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:09:01 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:01 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:01 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:01 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:01 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:01 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:01 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:01 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:01 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:01 INFO connection:71 - Opened connection [connectionId{localValue:85, serverValue:1865831}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:85, serverValue:1865831}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG command:56 - Command execution completed -2016-05-03 10:09:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:85, serverValue:1865831}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG command:56 - Command execution completed -2016-05-03 10:09:01 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:85, serverValue:1865831}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG command:56 - Command execution completed -2016-05-03 10:09:01 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:09:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:85, serverValue:1865831}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG command:56 - Command execution completed -2016-05-03 10:09:01 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:85, serverValue:1865831}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 DEBUG command:56 - Command execution completed -2016-05-03 10:09:01 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:85, serverValue:1865831}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:01 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:09:01 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:09:01 INFO WorkspaceExplorerServiceImpl:188 - end time - 40 msc 0 sec -2016-05-03 10:09:01 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:09:01 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:09:01 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:09:02 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-03 10:09:02 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-03 10:09:02 DEBUG query:56 - Query completed -2016-05-03 10:09:02 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:09:02 DEBUG connection:56 - Closing connection connectionId{localValue:84, serverValue:2137614} -2016-05-03 10:09:02 DEBUG connection:56 - Closing connection connectionId{localValue:81, serverValue:255093} -2016-05-03 10:09:02 INFO connection:71 - Closed connection [connectionId{localValue:85, serverValue:1865831}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:02 DEBUG connection:56 - Closing connection connectionId{localValue:85, serverValue:1865831} -2016-05-03 10:09:02 DEBUG connection:56 - Closing connection connectionId{localValue:83, serverValue:1551398} -2016-05-03 10:09:02 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:09:02 DEBUG connection:56 - Closing connection connectionId{localValue:82, serverValue:1865829} -2016-05-03 10:09:02 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:09:02 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:09:02 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:09:02 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:02 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:02 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:09:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:02 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:02 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:09:02 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:02 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:02 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:02 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:02 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:02 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:02 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:02 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:02 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:02 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:09:03 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:09:03 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:03 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:03 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:09:03 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:09:03 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:03 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:09:03 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:09:03 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:03 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:09:03 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:03 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:03 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:03 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:03 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:03 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:03 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:03 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:03 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:03 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:03 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:03 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:03 INFO connection:71 - Opened connection [connectionId{localValue:87, serverValue:1865832}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 INFO connection:71 - Opened connection [connectionId{localValue:86, serverValue:255094}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1051394, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:03 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:03 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:03 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:03 INFO connection:71 - Opened connection [connectionId{localValue:89, serverValue:2137615}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=715512, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=13192562, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:03 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=13.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:03 INFO connection:71 - Opened connection [connectionId{localValue:88, serverValue:1551399}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1189734, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=13.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:03 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:03 INFO connection:71 - Opened connection [connectionId{localValue:90, serverValue:1865833}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:90, serverValue:1865833}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG command:56 - Command execution completed -2016-05-03 10:09:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:90, serverValue:1865833}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG command:56 - Command execution completed -2016-05-03 10:09:03 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:90, serverValue:1865833}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG command:56 - Command execution completed -2016-05-03 10:09:03 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:09:03 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:03 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:90, serverValue:1865833}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:03 DEBUG command:56 - Command execution completed -2016-05-03 10:09:03 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:90, serverValue:1865833}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG command:56 - Command execution completed -2016-05-03 10:09:03 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:90, serverValue:1865833}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:09:03 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:09:03 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-03 10:09:03 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:09:03 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:09:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:09:03 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:09:03 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=13.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:09:03 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:03 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=13.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:09:03 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:03 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:03 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:03 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:03 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:03 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:03 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:03 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:03 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:03 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:03 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:03 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:03 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:03 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:03 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:03 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:03 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:09:03 DEBUG query:56 - Query completed -2016-05-03 10:09:03 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:09:03 DEBUG connection:56 - Closing connection connectionId{localValue:89, serverValue:2137615} -2016-05-03 10:09:03 DEBUG connection:56 - Closing connection connectionId{localValue:86, serverValue:255094} -2016-05-03 10:09:03 DEBUG connection:56 - Closing connection connectionId{localValue:88, serverValue:1551399} -2016-05-03 10:09:03 INFO connection:71 - Closed connection [connectionId{localValue:90, serverValue:1865833}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:03 DEBUG connection:56 - Closing connection connectionId{localValue:90, serverValue:1865833} -2016-05-03 10:09:03 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:09:03 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:09:03 DEBUG connection:56 - Closing connection connectionId{localValue:87, serverValue:1865832} -2016-05-03 10:09:03 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:09:03 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:09:04 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:04 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:09:04 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:09:04 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-03 10:09:04 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:04 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:04 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:04 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:04 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:04 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:04 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:04 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:09:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:04 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:04 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 10:09:04 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:09:04 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:04 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:09:04 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:09:04 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:04 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:04 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:04 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:04 DEBUG Operation:173 - get(String) - start -2016-05-03 10:09:04 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:04 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:04 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:04 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:04 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:04 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:04 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:04 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:04 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:04 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:04 INFO connection:71 - Opened connection [connectionId{localValue:92, serverValue:1865834}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:04 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1439885, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:04 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:04 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:04 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:04 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:04 INFO connection:71 - Opened connection [connectionId{localValue:91, serverValue:255097}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:04 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1236788, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:04 INFO connection:71 - Opened connection [connectionId{localValue:94, serverValue:2137617}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:04 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:04 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=968666, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:04 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:05 INFO connection:71 - Opened connection [connectionId{localValue:93, serverValue:1551400}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1061589, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:09:05 INFO connection:71 - Opened connection [connectionId{localValue:95, serverValue:1865835}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:09:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:05 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG query:56 - Query completed -2016-05-03 10:09:05 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 10:09:05 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:09:05 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:09:05 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG update:56 - Update completed -2016-05-03 10:09:05 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:95, serverValue:1865835}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG query:56 - Query completed -2016-05-03 10:09:05 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:05 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:05 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:05 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:05 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:05 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:05 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:05 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-03 10:09:05 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:09:05 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:09:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:05 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:05 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 10:09:05 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:09:05 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:09:05 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:05 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:09:05 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:09:05 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:05 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:05 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:05 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:05 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:05 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:05 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:05 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:05 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:05 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:05 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:05 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:05 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:05 INFO connection:71 - Opened connection [connectionId{localValue:96, serverValue:255098}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1098062, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:05 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:05 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:05 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:05 INFO connection:71 - Opened connection [connectionId{localValue:99, serverValue:2137618}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 INFO connection:71 - Opened connection [connectionId{localValue:97, serverValue:1865836}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=751656, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1142708, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:05 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:05 INFO connection:71 - Opened connection [connectionId{localValue:98, serverValue:1551401}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=915549, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}] -2016-05-03 10:09:05 INFO connection:71 - Opened connection [connectionId{localValue:100, serverValue:1865837}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:100, serverValue:1865837}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:100, serverValue:1865837}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:100, serverValue:1865837}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:05 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:100, serverValue:1865837}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:100, serverValue:1865837}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG command:56 - Command execution completed -2016-05-03 10:09:05 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:05 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:100, serverValue:1865837}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:05 DEBUG query:56 - Query completed -2016-05-03 10:09:05 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 10:09:05 DEBUG connection:56 - Closing connection connectionId{localValue:99, serverValue:2137618} -2016-05-03 10:09:05 DEBUG connection:56 - Closing connection connectionId{localValue:96, serverValue:255098} -2016-05-03 10:09:05 INFO connection:71 - Closed connection [connectionId{localValue:100, serverValue:1865837}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:05 DEBUG connection:56 - Closing connection connectionId{localValue:100, serverValue:1865837} -2016-05-03 10:09:05 DEBUG connection:56 - Closing connection connectionId{localValue:98, serverValue:1551401} -2016-05-03 10:09:05 DEBUG connection:56 - Closing connection connectionId{localValue:97, serverValue:1865836} -2016-05-03 10:09:05 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:09:05 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:05 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:09:05 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:09:05 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:09:05 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:09:05 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:09:05 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 10:09:05 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:07 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:07 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:07 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:09:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:07 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:07 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:07 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:94, serverValue:2137617} -2016-05-03 10:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:91, serverValue:255097} -2016-05-03 10:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:93, serverValue:1551400} -2016-05-03 10:09:07 INFO connection:71 - Closed connection [connectionId{localValue:95, serverValue:1865835}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:95, serverValue:1865835} -2016-05-03 10:09:07 DEBUG connection:56 - Closing connection connectionId{localValue:92, serverValue:1865834} -2016-05-03 10:09:07 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:09:07 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:09:07 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:09:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:09:07 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:09:07 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:09:07 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:09:07 INFO WorkspaceExplorerServiceImpl:142 - end time - 148 msc 0 sec -2016-05-03 10:09:07 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:09 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:09 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:09:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:09 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:09:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:09 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:09 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:09 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:09 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:09 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:09 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:09 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:09 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:09 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:09:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:09 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:09:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:09 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:09:09 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:09:09 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:09:09 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:09:09 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:09:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:09:09 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:09:09 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:09:09 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:09:09 INFO WorkspaceExplorerServiceImpl:142 - end time - 159 msc 0 sec -2016-05-03 10:09:09 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:09:18 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:18 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:18 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:18 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:18 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:18 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:18 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:18 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:09:18 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:09:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:18 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:18 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:09:18 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:09:18 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:18 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:09:18 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:09:18 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:18 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:09:18 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:18 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:18 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:18 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:18 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:18 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:18 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:18 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:18 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:18 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:18 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:18 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:18 INFO connection:71 - Opened connection [connectionId{localValue:101, serverValue:255100}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1080622, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:18 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:18 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:18 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:18 INFO connection:71 - Opened connection [connectionId{localValue:104, serverValue:2137622}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 INFO connection:71 - Opened connection [connectionId{localValue:102, serverValue:1865840}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=657884, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1236308, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:18 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:18 INFO connection:71 - Opened connection [connectionId{localValue:103, serverValue:1551405}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1483069, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:18 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 10:09:18 INFO connection:71 - Opened connection [connectionId{localValue:105, serverValue:1865841}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:105, serverValue:1865841}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG command:56 - Command execution completed -2016-05-03 10:09:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:105, serverValue:1865841}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG command:56 - Command execution completed -2016-05-03 10:09:18 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:105, serverValue:1865841}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG command:56 - Command execution completed -2016-05-03 10:09:18 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:09:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:105, serverValue:1865841}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG command:56 - Command execution completed -2016-05-03 10:09:18 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:105, serverValue:1865841}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 DEBUG command:56 - Command execution completed -2016-05-03 10:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:18 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:18 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:105, serverValue:1865841}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:18 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:09:18 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:18 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:18 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:18 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:18 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:18 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:18 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:18 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:18 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:18 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:09:18 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:09:18 INFO WorkspaceExplorerServiceImpl:188 - end time - 45 msc 0 sec -2016-05-03 10:09:18 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:09:18 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:09:18 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:09:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 10:09:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}] -2016-05-03 10:09:19 DEBUG query:56 - Query completed -2016-05-03 10:09:19 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:09:19 DEBUG connection:56 - Closing connection connectionId{localValue:104, serverValue:2137622} -2016-05-03 10:09:19 DEBUG connection:56 - Closing connection connectionId{localValue:101, serverValue:255100} -2016-05-03 10:09:19 INFO connection:71 - Closed connection [connectionId{localValue:105, serverValue:1865841}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:19 DEBUG connection:56 - Closing connection connectionId{localValue:105, serverValue:1865841} -2016-05-03 10:09:19 DEBUG connection:56 - Closing connection connectionId{localValue:103, serverValue:1551405} -2016-05-03 10:09:19 DEBUG connection:56 - Closing connection connectionId{localValue:102, serverValue:1865840} -2016-05-03 10:09:19 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:09:19 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:09:19 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:09:19 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:09:19 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:19 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:19 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:19 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:19 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:09:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:19 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:19 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:19 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:09:19 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:09:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:19 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:09:19 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:09:19 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:19 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:09:19 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:09:19 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:19 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:09:19 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:19 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:19 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:19 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:19 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:19 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:19 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:19 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:19 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:19 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:19 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:19 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:19 INFO connection:71 - Opened connection [connectionId{localValue:107, serverValue:1865842}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=941111, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:19 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:19 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:19 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:19 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:19 INFO connection:71 - Opened connection [connectionId{localValue:106, serverValue:255102}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=943816, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:19 INFO connection:71 - Opened connection [connectionId{localValue:109, serverValue:2137623}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=894431, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:19 INFO connection:71 - Opened connection [connectionId{localValue:108, serverValue:1551407}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:19 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:09:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:19 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1658823, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:19 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:09:19 INFO connection:71 - Opened connection [connectionId{localValue:110, serverValue:1865843}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:110, serverValue:1865843}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:19 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:19 DEBUG command:56 - Command execution completed -2016-05-03 10:09:19 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:19 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:19 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:110, serverValue:1865843}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:19 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:19 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:19 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:19 DEBUG command:56 - Command execution completed -2016-05-03 10:09:19 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:110, serverValue:1865843}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG command:56 - Command execution completed -2016-05-03 10:09:19 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:09:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:110, serverValue:1865843}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG command:56 - Command execution completed -2016-05-03 10:09:19 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:110, serverValue:1865843}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 DEBUG command:56 - Command execution completed -2016-05-03 10:09:19 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:110, serverValue:1865843}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:19 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:19 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:19 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:09:19 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:09:20 INFO WorkspaceExplorerServiceImpl:188 - end time - 41 msc 0 sec -2016-05-03 10:09:20 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:20 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:09:20 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:09:20 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:09:20 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:09:20 DEBUG query:56 - Query completed -2016-05-03 10:09:20 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:09:20 DEBUG connection:56 - Closing connection connectionId{localValue:109, serverValue:2137623} -2016-05-03 10:09:20 DEBUG connection:56 - Closing connection connectionId{localValue:106, serverValue:255102} -2016-05-03 10:09:20 DEBUG connection:56 - Closing connection connectionId{localValue:108, serverValue:1551407} -2016-05-03 10:09:20 INFO connection:71 - Closed connection [connectionId{localValue:110, serverValue:1865843}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:20 DEBUG connection:56 - Closing connection connectionId{localValue:110, serverValue:1865843} -2016-05-03 10:09:20 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:09:20 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:09:20 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:09:20 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:09:20 DEBUG connection:56 - Closing connection connectionId{localValue:107, serverValue:1865842} -2016-05-03 10:09:23 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:23 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:23 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:23 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:23 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:09:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:23 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:23 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:23 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:23 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:09:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:24 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:09:24 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:09:24 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:09:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:24 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:24 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:09:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:24 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:09:24 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:09:24 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:24 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:09:24 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:09:24 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:24 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:09:24 DEBUG Operation:173 - get(String) - start -2016-05-03 10:09:24 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:24 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:24 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:24 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:24 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:24 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:24 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:24 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:24 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:24 INFO connection:71 - Opened connection [connectionId{localValue:112, serverValue:1865846}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1053630, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:24 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:24 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:24 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:24 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:24 INFO connection:71 - Opened connection [connectionId{localValue:114, serverValue:2137624}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=603683, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:24 INFO connection:71 - Opened connection [connectionId{localValue:111, serverValue:255103}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1224689, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:24 INFO connection:71 - Opened connection [connectionId{localValue:113, serverValue:1551408}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=930111, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}] -2016-05-03 10:09:24 INFO connection:71 - Opened connection [connectionId{localValue:115, serverValue:1865847}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG command:56 - Command execution completed -2016-05-03 10:09:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG command:56 - Command execution completed -2016-05-03 10:09:24 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG command:56 - Command execution completed -2016-05-03 10:09:24 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:09:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG command:56 - Command execution completed -2016-05-03 10:09:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG command:56 - Command execution completed -2016-05-03 10:09:24 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:09:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG command:56 - Command execution completed -2016-05-03 10:09:24 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG command:56 - Command execution completed -2016-05-03 10:09:24 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:09:24 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG query:56 - Query completed -2016-05-03 10:09:24 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:09:24 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:09:24 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:09:24 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG update:56 - Update completed -2016-05-03 10:09:24 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:115, serverValue:1865847}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG query:56 - Query completed -2016-05-03 10:09:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:24 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:24 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:09:24 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:09:24 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:09:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:24 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:09:24 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:09:24 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:09:24 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:24 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:09:24 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:09:24 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:24 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:24 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:24 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:24 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:24 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:24 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:24 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:24 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:24 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:24 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:24 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:24 INFO connection:71 - Opened connection [connectionId{localValue:116, serverValue:255104}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1054725, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:24 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:24 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:24 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:24 INFO connection:71 - Opened connection [connectionId{localValue:117, serverValue:1865848}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 INFO connection:71 - Opened connection [connectionId{localValue:119, serverValue:2137625}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=616771, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=932140, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:24 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:24 INFO connection:71 - Opened connection [connectionId{localValue:118, serverValue:1551409}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:24 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1279437, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:24 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:09:25 INFO connection:71 - Opened connection [connectionId{localValue:120, serverValue:1865849}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:120, serverValue:1865849}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:25 DEBUG command:56 - Command execution completed -2016-05-03 10:09:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:120, serverValue:1865849}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:25 DEBUG command:56 - Command execution completed -2016-05-03 10:09:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:120, serverValue:1865849}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:25 DEBUG command:56 - Command execution completed -2016-05-03 10:09:25 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:09:25 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:09:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:120, serverValue:1865849}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:25 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:25 DEBUG command:56 - Command execution completed -2016-05-03 10:09:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:120, serverValue:1865849}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:25 DEBUG command:56 - Command execution completed -2016-05-03 10:09:25 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:09:25 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:120, serverValue:1865849}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:25 DEBUG query:56 - Query completed -2016-05-03 10:09:25 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:09:25 DEBUG connection:56 - Closing connection connectionId{localValue:119, serverValue:2137625} -2016-05-03 10:09:25 DEBUG connection:56 - Closing connection connectionId{localValue:116, serverValue:255104} -2016-05-03 10:09:25 DEBUG connection:56 - Closing connection connectionId{localValue:118, serverValue:1551409} -2016-05-03 10:09:25 INFO connection:71 - Closed connection [connectionId{localValue:120, serverValue:1865849}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:25 DEBUG connection:56 - Closing connection connectionId{localValue:120, serverValue:1865849} -2016-05-03 10:09:25 DEBUG connection:56 - Closing connection connectionId{localValue:117, serverValue:1865848} -2016-05-03 10:09:25 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:09:25 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:09:25 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:09:25 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:09:25 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:09:25 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:09:25 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:09:25 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:09:25 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:09:33 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:33 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:33 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:09:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:33 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:33 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:33 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:09:33 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:09:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:33 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:33 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:09:33 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:09:33 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:33 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:09:33 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:09:33 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:33 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:09:33 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:33 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:33 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:33 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:33 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:33 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:33 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:33 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:33 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:33 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:33 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:33 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:33 INFO connection:71 - Opened connection [connectionId{localValue:121, serverValue:255106}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=998931, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:33 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:33 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:33 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:33 INFO connection:71 - Opened connection [connectionId{localValue:124, serverValue:2137628}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=680188, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:33 INFO connection:71 - Opened connection [connectionId{localValue:122, serverValue:1865851}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1086893, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:33 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:33 INFO connection:71 - Opened connection [connectionId{localValue:123, serverValue:1551411}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1193590, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:33 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:09:33 INFO connection:71 - Closed connection [connectionId{localValue:115, serverValue:1865847}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:115, serverValue:1865847} -2016-05-03 10:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:114, serverValue:2137624} -2016-05-03 10:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:111, serverValue:255103} -2016-05-03 10:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:113, serverValue:1551408} -2016-05-03 10:09:33 DEBUG connection:56 - Closing connection connectionId{localValue:112, serverValue:1865846} -2016-05-03 10:09:33 INFO connection:71 - Opened connection [connectionId{localValue:125, serverValue:1865852}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:125, serverValue:1865852}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:33 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:33 DEBUG command:56 - Command execution completed -2016-05-03 10:09:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:125, serverValue:1865852}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG command:56 - Command execution completed -2016-05-03 10:09:33 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:125, serverValue:1865852}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:09:33 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:33 DEBUG command:56 - Command execution completed -2016-05-03 10:09:33 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:09:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:125, serverValue:1865852}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG command:56 - Command execution completed -2016-05-03 10:09:33 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:125, serverValue:1865852}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 DEBUG command:56 - Command execution completed -2016-05-03 10:09:33 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:125, serverValue:1865852}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:33 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:33 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:09:33 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:09:33 INFO WorkspaceExplorerServiceImpl:188 - end time - 41 msc 0 sec -2016-05-03 10:09:33 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:09:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:09:33 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:09:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.7 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:09:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:09:34 DEBUG query:56 - Query completed -2016-05-03 10:09:34 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:09:34 DEBUG connection:56 - Closing connection connectionId{localValue:124, serverValue:2137628} -2016-05-03 10:09:34 INFO connection:71 - Closed connection [connectionId{localValue:125, serverValue:1865852}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:34 DEBUG connection:56 - Closing connection connectionId{localValue:125, serverValue:1865852} -2016-05-03 10:09:34 DEBUG connection:56 - Closing connection connectionId{localValue:121, serverValue:255106} -2016-05-03 10:09:34 DEBUG connection:56 - Closing connection connectionId{localValue:123, serverValue:1551411} -2016-05-03 10:09:34 DEBUG connection:56 - Closing connection connectionId{localValue:122, serverValue:1865851} -2016-05-03 10:09:34 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:09:34 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:09:34 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:09:34 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:09:34 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:34 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:34 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:34 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:34 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:34 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:09:34 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:09:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:34 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:34 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:09:34 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:09:34 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:34 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:09:34 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:09:34 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:34 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:09:34 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:34 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:34 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:34 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:34 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:34 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:34 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:34 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:34 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:34 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:34 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:34 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:34 INFO connection:71 - Opened connection [connectionId{localValue:127, serverValue:1865853}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1129496, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:34 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:34 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:34 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:34 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:34 INFO connection:71 - Opened connection [connectionId{localValue:129, serverValue:2137629}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=974998, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:34 INFO connection:71 - Opened connection [connectionId{localValue:126, serverValue:255109}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1384478, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:34 INFO connection:71 - Opened connection [connectionId{localValue:128, serverValue:1551412}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=917402, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:34 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.9 ms, state=CONNECTED}] -2016-05-03 10:09:34 INFO connection:71 - Opened connection [connectionId{localValue:130, serverValue:1865854}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:130, serverValue:1865854}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG command:56 - Command execution completed -2016-05-03 10:09:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:130, serverValue:1865854}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG command:56 - Command execution completed -2016-05-03 10:09:34 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:130, serverValue:1865854}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG command:56 - Command execution completed -2016-05-03 10:09:34 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:09:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:130, serverValue:1865854}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG command:56 - Command execution completed -2016-05-03 10:09:34 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:130, serverValue:1865854}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG command:56 - Command execution completed -2016-05-03 10:09:34 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:130, serverValue:1865854}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:09:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:34 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:34 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:09:34 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:09:34 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:09:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 42 msc 0 sec -2016-05-03 10:09:35 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:09:35 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:09:35 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:09:35 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:09:35 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:09:35 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:35 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:35 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:35 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:35 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:09:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:09:35 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:35 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:35 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:35 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:35 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:35 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:35 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:35 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:35 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:09:35 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:09:35 DEBUG query:56 - Query completed -2016-05-03 10:09:35 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:09:35 DEBUG connection:56 - Closing connection connectionId{localValue:129, serverValue:2137629} -2016-05-03 10:09:35 DEBUG connection:56 - Closing connection connectionId{localValue:126, serverValue:255109} -2016-05-03 10:09:35 INFO connection:71 - Closed connection [connectionId{localValue:130, serverValue:1865854}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:35 DEBUG connection:56 - Closing connection connectionId{localValue:130, serverValue:1865854} -2016-05-03 10:09:35 DEBUG connection:56 - Closing connection connectionId{localValue:128, serverValue:1551412} -2016-05-03 10:09:35 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:09:35 DEBUG connection:56 - Closing connection connectionId{localValue:127, serverValue:1865853} -2016-05-03 10:09:35 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:09:35 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:09:35 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:09:36 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:36 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:36 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:09:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:36 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:36 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:09:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:36 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:36 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:09:36 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:09:36 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:36 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:36 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:36 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:36 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:36 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:36 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:36 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:36 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:36 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:09:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:09:37 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:09:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:09:37 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=bbeb7383-9005-4d4b-a6d2-aacd8465d0bf, name=hcaf_filtered_2.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:56:16 CEST 2016] -2016-05-03 10:09:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:37 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:37 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:09:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:37 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:37 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 10:09:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:09:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:09:37 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:09:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:37 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:37 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:37 DEBUG Operation:173 - get(String) - start -2016-05-03 10:09:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:37 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:131, serverValue:255110}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:132, serverValue:1865855}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1339948, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1318839, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:37 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:134, serverValue:2137630}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1121340, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:133, serverValue:1551413}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1049238, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:135, serverValue:1865856}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:09:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:37 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG query:56 - Query completed -2016-05-03 10:09:37 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 10:09:37 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:09:37 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:09:37 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG update:56 - Update completed -2016-05-03 10:09:37 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:135, serverValue:1865856}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG query:56 - Query completed -2016-05-03 10:09:37 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:09:37 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:09:37 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:09:37 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:09:37 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:09:37 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:09:37 INFO JCRServlets:267 - Servlet getItemById bbeb7383-9005-4d4b-a6d2-aacd8465d0bf -2016-05-03 10:09:37 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_2.csv -2016-05-03 10:09:37 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:09:37 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:09:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:37 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:37 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_2.csv -2016-05-03 10:09:37 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:09:37 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:09:37 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:09:37 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:09:37 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:09:37 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:09:37 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:09:37 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:09:37 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:09:37 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:09:37 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:09:37 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:09:37 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:37 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:37 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@a8892fed, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@4e5fe052, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@78804fb0, socketFactory=javax.net.DefaultSocketFactory@2fefe99e, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:09:37 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:09:37 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:136, serverValue:255111}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=760651, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:37 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:09:37 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:37 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:139, serverValue:2137632}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=604292, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:137, serverValue:1865857}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1260333, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:37 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:138, serverValue:1551414}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1051642, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.6 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.1 ms, state=CONNECTED}] -2016-05-03 10:09:37 INFO connection:71 - Opened connection [connectionId{localValue:140, serverValue:1865858}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:140, serverValue:1865858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:140, serverValue:1865858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:140, serverValue:1865858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:37 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:140, serverValue:1865858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:140, serverValue:1865858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG command:56 - Command execution completed -2016-05-03 10:09:37 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:37 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:140, serverValue:1865858}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG query:56 - Query completed -2016-05-03 10:09:37 INFO MongoIO:186 - object found hcaf_filtered_2.csv -2016-05-03 10:09:37 DEBUG connection:56 - Closing connection connectionId{localValue:139, serverValue:2137632} -2016-05-03 10:09:37 DEBUG connection:56 - Closing connection connectionId{localValue:136, serverValue:255111} -2016-05-03 10:09:37 INFO connection:71 - Closed connection [connectionId{localValue:140, serverValue:1865858}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:37 DEBUG connection:56 - Closing connection connectionId{localValue:140, serverValue:1865858} -2016-05-03 10:09:37 DEBUG connection:56 - Closing connection connectionId{localValue:138, serverValue:1551414} -2016-05-03 10:09:37 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:09:37 DEBUG connection:56 - Closing connection connectionId{localValue:137, serverValue:1865857} -2016-05-03 10:09:37 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_2.csv -2016-05-03 10:09:37 INFO Operation:55 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:09:37 INFO Operation:57 - URL generated: smp://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:09:37 DEBUG Operation:87 - translating: http://data-d.d4science.org/Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:09:37 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:09:37 DEBUG Operation:93 - get params: http://data-d.d4science.org/ Sa5aWbLjrmhs/MRotkLvTZSNltA/kMubGmbP5+HKCzc= -2016-05-03 10:09:37 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 10:09:37 INFO Operation:65 - URL translated: http://data-d.d4science.org/U2E1YVdiTGpybWhzL01Sb3RrTHZUWlNObHRBL2tNdWJHbWJQNStIS0N6Yz0 -2016-05-03 10:09:37 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:09:37 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}] -2016-05-03 10:09:38 DEBUG connection:56 - Closing connection connectionId{localValue:134, serverValue:2137630} -2016-05-03 10:09:38 DEBUG connection:56 - Closing connection connectionId{localValue:133, serverValue:1551413} -2016-05-03 10:09:38 INFO connection:71 - Closed connection [connectionId{localValue:135, serverValue:1865856}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:09:38 DEBUG connection:56 - Closing connection connectionId{localValue:131, serverValue:255110} -2016-05-03 10:09:38 DEBUG connection:56 - Closing connection connectionId{localValue:135, serverValue:1865856} -2016-05-03 10:09:38 DEBUG connection:56 - Closing connection connectionId{localValue:132, serverValue:1865855} -2016-05-03 10:10:20 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:10:20 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:10:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:10:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:10:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:10:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:10:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:10:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:10:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:10:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:10:40 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:10:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:10:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:10:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:10:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:10:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:10:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:10:40 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:10:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:10:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:10:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:10:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:10:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:10:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:10:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:10:40 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:10:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:10:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:10:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:10:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:10:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:10:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:10:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:10:40 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:10:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:10:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:10:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:10:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:10:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:10:40 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:10:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:10:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:10:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:10:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:10:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:10:40 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:10:40 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:10:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:10:40 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:10:40 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:10:41 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:10:41 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:10:41 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:10:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:10:41 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:10:41 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:10:41 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:10:41 INFO WorkspaceExplorerServiceImpl:142 - end time - 613 msc 0 sec -2016-05-03 10:10:41 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:11:29 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 10:11:29 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 10:11:29 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 10:11:29 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:11:29 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:11:29 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:11:29 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:11:29 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@6ccf0e08 -2016-05-03 10:11:29 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:29 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:11:29 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:11:29 DEBUG TemplateModel:83 - 2016-05-03 10:11:29, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:11:29 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:11:29 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 10:11:31 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:11:31 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:11:31 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:11:31 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:11:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:11:31 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:11:31 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:11:31 DEBUG TemplateModel:83 - 2016-05-03 10:11:31, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:11:31 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:11:31 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:11:31 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 127 ms -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 10:11:31 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 10:11:31 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 10:11:31 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:11:31 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:11:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@4c83439f -2016-05-03 10:11:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@38e17f69 -2016-05-03 10:11:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@7d6885ac -2016-05-03 10:11:31 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4a664d41 -2016-05-03 10:11:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 120 ms -2016-05-03 10:11:31 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 10:11:31 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 10:11:31 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 10:11:31 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 10:11:31 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 10:11:31 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:11:31 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:11:31 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 10:11:31 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 24 ms -2016-05-03 10:11:31 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 10:11:31 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:11:31 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 10:11:31 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:11:32 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:11:32 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:11:32 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:11:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:32 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:11:32 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:11:32 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 10:11:32 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:32 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:32 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 10:11:32 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 10:11:32 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 10:11:32 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 10:11:32 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 10:11:32 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 10:11:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:11:32 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:11:32 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 10:11:32 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-03 10:11:32 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 10:11:32 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:32 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:32 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:32 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 10:11:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:32 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 10:11:32 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:11:32 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:11:32 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 10:11:32 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:11:32 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:11:32 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 10:11:32 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 10:11:32 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:32 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:32 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:32 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:32 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:11:32 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 10:11:32 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:11:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 10:11:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:33 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:11:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 10:11:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:33 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:11:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 10:11:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:33 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:33 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:33 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:33 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:33 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:33 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:33 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:11:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 10:11:33 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:33 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:34 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:11:34 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:11:34 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:11:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:11:34 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:11:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:11:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:34 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 10:11:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:11:34 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:11:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:11:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:34 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 10:11:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:34 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 10:11:34 INFO WorkspaceExplorerServiceImpl:188 - end time - 154 msc 0 sec -2016-05-03 10:11:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:34 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:11:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:34 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:34 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:34 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:34 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:34 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:34 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:34 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 10:11:34 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 10:11:34 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:34 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:34 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 10:11:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:11:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:11:34 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:11:34 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:11:34 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-03 10:11:34 INFO WorkspaceExplorerServiceImpl:188 - end time - 123 msc 0 sec -2016-05-03 10:11:34 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:11:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:11:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 10:11:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 10:11:35 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 10:11:35 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 10:11:35 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 10:11:35 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 10:11:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:11:35 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 10:11:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:11:35 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:11:35 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:11:35 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 10:11:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:11:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:11:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:11:35 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:11:35 INFO WorkspaceExplorerServiceImpl:188 - end time - 347 msc 0 sec -2016-05-03 10:11:38 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:38 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:11:38 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:11:38 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 10:11:38 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:11:38 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:11:39 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 10:11:39 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 10:11:39 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 10:11:39 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 10:11:39 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 10:11:39 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 10:11:39 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:11:39 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:11:39 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:11:39 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:11:39 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:11:39 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:11:39 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:11:39 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:11:39 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:11:39 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:11:39 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:11:39 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:11:39 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:11:39 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:11:39 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:11:39 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:11:39 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:11:39 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:11:39 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:11:39 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:11:39 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:11:39 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:11:39 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:11:39 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:11:39 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:11:39 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:11:39 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:11:39 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:11:39 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:11:39 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:11:39 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:11:39 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:11:39 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:11:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:11:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:11:39 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:11:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:39 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:11:39 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:11:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:11:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:11:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:39 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:39 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:39 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:39 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:39 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:39 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:39 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:11:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:39 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:39 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:11:39 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:11:39 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:11:39 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:11:39 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:11:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:11:39 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:11:39 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:11:39 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:11:39 INFO WorkspaceExplorerServiceImpl:142 - end time - 205 msc 0 sec -2016-05-03 10:11:39 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:11:47 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:11:47 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:11:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:11:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:11:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:11:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:47 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:11:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:11:47 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:11:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:11:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:48 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:11:48 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:11:48 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:11:48 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:11:48 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:11:48 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:11:48 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:11:48 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:11:48 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:11:48 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:11:48 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:11:48 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:11:48 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:11:48 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:11:48 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:11:48 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:11:48 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:11:48 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:11:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:11:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:11:48 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:11:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:11:48 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:48 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:48 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:48 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:48 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:48 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:48 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:11:48 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:11:48 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:48 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:11:48 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:11:48 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:11:48 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:48 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:48 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@27111573, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@35e51d4b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@54e64291, socketFactory=javax.net.DefaultSocketFactory@591c6922, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:11:48 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:11:48 INFO WorkspaceExplorerServiceImpl:188 - end time - 55 msc 0 sec -2016-05-03 10:11:48 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:11:48 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:11:48 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:11:48 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:11:48 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:255133}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1462962, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:48 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:1865881}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:11:48 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:48 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1554558, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:48 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:48 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2137655}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=931323, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:48 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1551438}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1234844, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:11:48 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1865882}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865882}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG command:56 - Command execution completed -2016-05-03 10:11:48 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865882}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG command:56 - Command execution completed -2016-05-03 10:11:48 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865882}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG command:56 - Command execution completed -2016-05-03 10:11:48 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:11:48 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865882}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG command:56 - Command execution completed -2016-05-03 10:11:48 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865882}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG command:56 - Command execution completed -2016-05-03 10:11:48 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1865882}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:48 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.9 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}] -2016-05-03 10:11:49 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:11:49 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:11:49 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:11:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:49 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:11:49 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:11:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:11:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:11:49 DEBUG query:56 - Query completed -2016-05-03 10:11:49 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:11:49 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:255133} -2016-05-03 10:11:49 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1865882}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:11:49 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1551438} -2016-05-03 10:11:49 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1865882} -2016-05-03 10:11:49 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2137655} -2016-05-03 10:11:49 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:1865881} -2016-05-03 10:11:49 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:11:49 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:11:49 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:11:49 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:11:49 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:11:49 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:11:49 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:11:49 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:11:49 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:11:49 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:11:49 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:11:49 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:11:49 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:11:49 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:11:49 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:11:49 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:11:49 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:11:49 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:11:49 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:11:49 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:11:49 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:11:49 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:49 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:49 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:49 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@27111573, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@35e51d4b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@54e64291, socketFactory=javax.net.DefaultSocketFactory@591c6922, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:11:49 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:11:49 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:11:49 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:255134}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1305407, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:49 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:11:49 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:49 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:49 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1865883}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:49 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1208106, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:49 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:49 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2137656}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=992218, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:11:49 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:11:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:49 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:11:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:49 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:49 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1551439}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:49 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:49 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:49 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:49 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:49 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:49 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:49 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:49 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1325121, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:11:49 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1865884}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865884}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG command:56 - Command execution completed -2016-05-03 10:11:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:11:49 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865884}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:11:49 DEBUG command:56 - Command execution completed -2016-05-03 10:11:49 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865884}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG command:56 - Command execution completed -2016-05-03 10:11:49 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:11:49 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865884}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG command:56 - Command execution completed -2016-05-03 10:11:49 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865884}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG command:56 - Command execution completed -2016-05-03 10:11:49 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1865884}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:11:49 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:11:49 INFO WorkspaceExplorerServiceImpl:188 - end time - 47 msc 0 sec -2016-05-03 10:11:49 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:11:49 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:49 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:11:50 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:11:50 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:11:50 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:11:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:50 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:11:50 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:11:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:50 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:50 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:11:50 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:11:50 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:50 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:50 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:50 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:50 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:50 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:11:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:11:50 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:11:50 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:11:50 DEBUG query:56 - Query completed -2016-05-03 10:11:50 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:11:50 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2137656} -2016-05-03 10:11:50 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:255134} -2016-05-03 10:11:50 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1551439} -2016-05-03 10:11:50 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1865884}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:11:50 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1865884} -2016-05-03 10:11:50 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:11:50 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1865883} -2016-05-03 10:11:50 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:11:50 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:11:50 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:11:50 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:11:50 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:11:50 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:11:50 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:11:51 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:11:51 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:11:51 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:11:51 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:11:51 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:51 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:51 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:51 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:51 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:51 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:51 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:11:51 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:11:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:11:51 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:11:51 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:11:51 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:11:51 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:11:51 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:11:51 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:11:51 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:11:51 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:11:51 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:11:51 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:11:51 DEBUG Operation:173 - get(String) - start -2016-05-03 10:11:51 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:11:51 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:11:51 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:11:51 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:11:51 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:51 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:51 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:51 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@27111573, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@35e51d4b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@54e64291, socketFactory=javax.net.DefaultSocketFactory@591c6922, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:11:51 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:11:51 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:255136}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1163899, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:52 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:11:52 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:52 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1865885}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1324618, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:52 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2137657}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=952392, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1551441}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1665139, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1865886}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:11:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:11:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:11:52 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG query:56 - Query completed -2016-05-03 10:11:52 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:11:52 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:11:52 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:11:52 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG update:56 - Update completed -2016-05-03 10:11:52 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1865886}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG query:56 - Query completed -2016-05-03 10:11:52 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:11:52 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:11:52 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:11:52 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:11:52 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:11:52 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:11:52 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:11:52 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:11:52 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:11:52 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:11:52 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:11:52 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:11:52 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:11:52 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:11:52 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:11:52 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:11:52 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:11:52 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:11:52 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:11:52 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:11:52 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:11:52 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:11:52 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:11:52 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:11:52 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:11:52 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:52 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:52 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:52 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@27111573, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@35e51d4b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@54e64291, socketFactory=javax.net.DefaultSocketFactory@591c6922, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:11:52 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:11:52 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:255137}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1320637, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:52 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:11:52 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:52 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:11:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2137658}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=977524, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1865888}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1753442, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:52 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1551442}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=2134903, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:11:52 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=2.1 ms, state=CONNECTED}] -2016-05-03 10:11:52 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1865889}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865889}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865889}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865889}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:11:52 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:11:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865889}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865889}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG command:56 - Command execution completed -2016-05-03 10:11:52 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:11:52 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1865889}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:11:52 DEBUG query:56 - Query completed -2016-05-03 10:11:52 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:11:52 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2137658} -2016-05-03 10:11:52 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:255137} -2016-05-03 10:11:52 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1551442} -2016-05-03 10:11:52 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1865889}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:11:52 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1865889} -2016-05-03 10:11:52 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:11:52 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1865888} -2016-05-03 10:11:52 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:11:52 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:11:52 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:11:52 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:11:52 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:11:52 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:11:52 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:11:52 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:12:02 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:12:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:12:02 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:12:02 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:12:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:12:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:12:02 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:12:02 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:12:12 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:12:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:12:12 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:12:12 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:12:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:12:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}] -2016-05-03 10:12:12 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:12:12 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:12:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:12:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:12:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:12:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:12:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:12:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:12:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:12:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:12:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:12:24 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:12:32 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:12:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:12:32 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:12:32 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:12:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:12:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:12:32 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:12:32 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:13:03 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 10:13:03 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 10:13:03 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 10:13:03 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:13:03 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:13:03 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:13:03 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:13:03 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@624a38fd -2016-05-03 10:13:03 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:03 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:13:03 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:13:03 DEBUG TemplateModel:83 - 2016-05-03 10:13:03, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:13:03 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:13:03 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 10:13:05 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:13:05 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:13:05 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:13:05 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:13:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:05 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:13:05 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:13:05 DEBUG TemplateModel:83 - 2016-05-03 10:13:05, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:13:05 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:13:05 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:13:05 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 133 ms -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 10:13:05 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 10:13:05 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 10:13:05 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:13:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:13:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@25095e4a -2016-05-03 10:13:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@6d6974b9 -2016-05-03 10:13:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@3a533cf4 -2016-05-03 10:13:05 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@4d8d3512 -2016-05-03 10:13:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 90 ms -2016-05-03 10:13:05 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 10:13:05 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 10:13:05 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 10:13:05 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 10:13:05 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 10:13:05 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:05 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:13:05 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 10:13:05 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 18 ms -2016-05-03 10:13:05 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 10:13:05 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:13:05 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 10:13:05 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:13:06 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:13:06 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:13:06 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:13:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:06 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:13:06 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:13:06 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 10:13:06 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:06 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:06 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 10:13:06 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 10:13:06 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 10:13:06 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 10:13:06 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 10:13:06 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 10:13:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 35 -2016-05-03 10:13:06 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:13:06 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 10:13:06 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 21 ms -2016-05-03 10:13:06 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 10:13:06 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:06 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:06 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:06 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 10:13:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:06 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 10:13:06 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:13:06 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 10:13:06 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:13:06 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:13:06 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 10:13:06 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:13:06 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:13:06 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 10:13:06 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 10:13:06 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:06 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:06 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:13:06 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 10:13:06 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:07 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:13:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 10:13:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:07 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:13:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 10:13:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:07 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:13:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 10:13:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:07 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:13:07 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:13:07 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:13:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:13:07 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:13:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:13:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:07 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 10:13:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:07 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:13:07 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:07 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:07 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:07 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:07 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:07 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:07 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:07 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:07 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 10:13:07 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:08 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:08 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:08 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:08 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:08 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:08 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:08 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:08 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:08 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 10:13:08 INFO WorkspaceExplorerServiceImpl:188 - end time - 201 msc 0 sec -2016-05-03 10:13:08 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 10:13:08 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:08 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:08 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:13:08 INFO WorkspaceExplorerServiceImpl:188 - end time - 125 msc 0 sec -2016-05-03 10:13:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:13:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 26 ms -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 10:13:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:13:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 10:13:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 18 ms -2016-05-03 10:13:08 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 10:13:08 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 10:13:08 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 10:13:08 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 10:13:08 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 10:13:08 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:13:08 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:13:08 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 19 ms -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 34 -2016-05-03 10:13:08 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:08 INFO WorkspaceExplorerServiceImpl:188 - end time - 436 msc 0 sec -2016-05-03 10:13:13 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:13:13 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:13:13 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:13:13 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 10:13:13 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:13:13 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:13:13 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 10:13:13 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 10:13:13 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 10:13:13 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 10:13:13 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 10:13:13 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 10:13:13 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:13:13 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:13:13 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:13:13 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:13:13 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:13:13 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:13:13 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:13:13 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:13:13 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:13:13 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:13:13 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:13:13 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:13:13 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:13:13 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:13:13 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:13:13 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:13:13 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:13:13 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:13:13 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:13:13 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:13:13 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:13:13 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:13:13 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:13:13 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:13:13 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:13:13 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:13:13 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:13:13 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:13:13 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:13:13 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:13:13 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:13:13 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:13:13 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:13:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:14 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:13:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:14 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:13:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:13:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:14 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:13:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:14 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:14 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:14 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:14 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:14 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:14 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:14 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:14 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:14 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:13:14 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:13:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:14 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:13:14 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:13:14 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:13:14 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:13:14 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:13:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:13:14 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:13:14 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:13:14 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:13:14 INFO WorkspaceExplorerServiceImpl:142 - end time - 192 msc 0 sec -2016-05-03 10:13:14 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:13:22 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:13:22 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:13:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:22 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:13:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:22 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:13:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:13:22 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:13:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:13:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:13:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:13:22 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:13:22 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:13:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:13:22 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:13:22 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:13:22 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:13:22 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:13:22 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:13:22 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:13:22 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:13:22 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:13:22 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:13:22 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:13:22 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:13:22 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:13:22 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:13:22 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:13:22 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:22 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:13:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:13:22 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:13:22 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:13:22 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:22 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:22 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:22 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:22 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:22 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:13:22 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:22 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:13:22 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:22 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@73e042d4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2e94826b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3aed8ac5, socketFactory=javax.net.DefaultSocketFactory@4131a9bc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:13:22 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:13:22 INFO JCRServlets:697 - Calling Servlet get Parents By Id 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:13:22 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:13:22 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:13:22 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:13:22 INFO WorkspaceExplorerServiceImpl:188 - end time - 69 msc 0 sec -2016-05-03 10:13:22 INFO connection:71 - Opened connection [connectionId{localValue:1, serverValue:1865906}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:13:22 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:13:22 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1657866, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:22 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:13:22 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:22 INFO connection:71 - Opened connection [connectionId{localValue:2, serverValue:255153}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1675498, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:22 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:22 INFO connection:71 - Opened connection [connectionId{localValue:4, serverValue:2137674}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1843304, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:22 INFO connection:71 - Opened connection [connectionId{localValue:3, serverValue:1551458}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1319636, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:22 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:13:22 INFO connection:71 - Opened connection [connectionId{localValue:5, serverValue:1865907}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG command:56 - Command execution completed -2016-05-03 10:13:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG command:56 - Command execution completed -2016-05-03 10:13:22 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG command:56 - Command execution completed -2016-05-03 10:13:22 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:13:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG command:56 - Command execution completed -2016-05-03 10:13:22 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:5, serverValue:1865907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:22 DEBUG command:56 - Command execution completed -2016-05-03 10:13:22 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:5, serverValue:1865907}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG query:56 - Query completed -2016-05-03 10:13:23 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 10 objects -2016-05-03 10:13:23 DEBUG connection:56 - Closing connection connectionId{localValue:4, serverValue:2137674} -2016-05-03 10:13:23 DEBUG connection:56 - Closing connection connectionId{localValue:3, serverValue:1551458} -2016-05-03 10:13:23 DEBUG connection:56 - Closing connection connectionId{localValue:2, serverValue:255153} -2016-05-03 10:13:23 INFO connection:71 - Closed connection [connectionId{localValue:5, serverValue:1865907}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:13:23 DEBUG connection:56 - Closing connection connectionId{localValue:5, serverValue:1865907} -2016-05-03 10:13:23 DEBUG connection:56 - Closing connection connectionId{localValue:1, serverValue:1865906} -2016-05-03 10:13:23 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:13:23 INFO DefaultMongoClient:1329 - getFolderTotalVolume 4033313 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:13:23 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest -2016-05-03 10:13:23 INFO WorkspaceExplorerServiceImpl:503 - returning size: 4033313 -2016-05-03 10:13:23 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:13:23 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:13:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:23 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:13:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:23 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:13:23 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:13:23 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:13:23 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:13:23 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:13:23 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:13:23 DEBUG ServiceEngine:62 - path(String) - name: Bioclimate_Hcaf -2016-05-03 10:13:23 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:13:23 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:13:23 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:13:23 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:13:23 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:13:23 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:13:23 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:13:23 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:13:23 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:13:23 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:13:23 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:13:23 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:13:23 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:23 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:23 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:23 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@73e042d4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2e94826b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3aed8ac5, socketFactory=javax.net.DefaultSocketFactory@4131a9bc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:13:23 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:13:23 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:13:23 INFO connection:71 - Opened connection [connectionId{localValue:6, serverValue:255154}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 INFO connection:71 - Opened connection [connectionId{localValue:7, serverValue:1865908}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1434920, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:23 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:13:23 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:23 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=2874748, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:23 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:23 INFO connection:71 - Opened connection [connectionId{localValue:9, serverValue:2137675}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1476636, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:23 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:13:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:23 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:13:23 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:23 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:23 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:23 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:23 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:23 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:23 INFO connection:71 - Opened connection [connectionId{localValue:8, serverValue:1551459}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1750576, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:23 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.9 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.8 ms, state=CONNECTED}] -2016-05-03 10:13:23 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:13:23 INFO JCRServlets:267 - Servlet getItemById 093db539-e088-4ba0-9c34-25b3e93ebe40 -2016-05-03 10:13:23 INFO connection:71 - Opened connection [connectionId{localValue:10, serverValue:1865909}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG command:56 - Command execution completed -2016-05-03 10:13:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG command:56 - Command execution completed -2016-05-03 10:13:23 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG command:56 - Command execution completed -2016-05-03 10:13:23 DEBUG DefaultMongoClient:1324 - getFolderTotalVolume for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:13:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG command:56 - Command execution completed -2016-05-03 10:13:23 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:10, serverValue:1865909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 DEBUG command:56 - Command execution completed -2016-05-03 10:13:23 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:10, serverValue:1865909}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:23 INFO JCRServlets:142 - Calling servlet getChildrenById 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:13:23 INFO JCRServlets:697 - Calling Servlet get Parents By Id 093db539-e088-4ba0-9c34-25b3e93ebe40 by giancarlo.panichi -2016-05-03 10:13:23 INFO WorkspaceExplorerServiceImpl:188 - end time - 46 msc 0 sec -2016-05-03 10:13:23 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:13:23 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=093db539-e088-4ba0-9c34-25b3e93ebe40, name=Bioclimate_Hcaf, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:13:23 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:13:23 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=6543184f-3c92-4982-88ed-1287d525eca2, name=StatisticalTest, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=null] -2016-05-03 10:13:23 DEBUG ItemBuilder:361 - breadcrumb returning: Item [id=efc48ebb-f682-4636-9a98-1cbee166e336, name=Home, type=FOLDER, path=null, children=[], owner=null, isFolder=true, isSpecialFolder=false, isSharedFolder=false, isRoot=true, creationDate=null] -2016-05-03 10:13:24 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:13:24 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:13:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:24 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:13:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:24 INFO WorkspaceExplorerServiceImpl:518 - get MimeType By ItemId 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:13:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:13:24 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:13:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:13:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:24 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:13:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:24 DEBUG ASLSession:458 - Getting security token: null in thread 32 -2016-05-03 10:13:24 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 32 -2016-05-03 10:13:24 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:24 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:24 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:24 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:24 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:24 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:24 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:13:24 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:13:24 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:13:24 INFO WorkspaceExplorerServiceImpl:503 - returning size: 1951243 -2016-05-03 10:13:24 DEBUG query:56 - Query completed -2016-05-03 10:13:24 INFO DefaultMongoClient:1372 - retrieveRemoteFileObject found 2 objects -2016-05-03 10:13:24 DEBUG connection:56 - Closing connection connectionId{localValue:9, serverValue:2137675} -2016-05-03 10:13:24 DEBUG connection:56 - Closing connection connectionId{localValue:6, serverValue:255154} -2016-05-03 10:13:24 INFO connection:71 - Closed connection [connectionId{localValue:10, serverValue:1865909}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:13:24 DEBUG connection:56 - Closing connection connectionId{localValue:8, serverValue:1551459} -2016-05-03 10:13:24 DEBUG connection:56 - Closing connection connectionId{localValue:10, serverValue:1865909} -2016-05-03 10:13:24 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:13:24 DEBUG connection:56 - Closing connection connectionId{localValue:7, serverValue:1865908} -2016-05-03 10:13:24 INFO DefaultMongoClient:1329 - getFolderTotalVolume 3902486 for folder /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:13:24 DEBUG GetSize:35 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf -2016-05-03 10:13:24 INFO WorkspaceExplorerServiceImpl:503 - returning size: 3902486 -2016-05-03 10:13:25 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 31 -2016-05-03 10:13:25 DEBUG ASLSession:458 - Getting security token: null in thread 31 -2016-05-03 10:13:25 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:13:25 DEBUG DataMinerManagerServiceImpl:369 - retrieveTableInformation(): Item [id=5e79b37f-a9d2-407f-9bfa-9add63f5d9d9, name=hcaf_filtered_1.csv, type=EXTERNAL_FILE, path=/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv, children=[], owner=giancarlo.panichi, isFolder=false, isSpecialFolder=false, isSharedFolder=false, isRoot=false, creationDate=Mon May 02 14:55:49 CEST 2016] -2016-05-03 10:13:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:25 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:13:25 DEBUG ServiceEngine:193 - get() - start -2016-05-03 10:13:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:13:25 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:13:25 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:13:25 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:13:25 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:13:25 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:13:25 INFO OperationFactory:39 - getOperation(String) - start download -2016-05-03 10:13:25 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:13:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:13:25 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:13:25 DEBUG Download:57 - DOWNLOAD /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv in bucket: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:13:25 DEBUG Operation:173 - get(String) - start -2016-05-03 10:13:25 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:13:25 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:13:25 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:13:25 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:13:25 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:25 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:25 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@73e042d4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2e94826b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3aed8ac5, socketFactory=javax.net.DefaultSocketFactory@4131a9bc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:13:25 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:13:25 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:12, serverValue:1865910}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:11, serverValue:255155}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1496893, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:25 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:13:25 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:25 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1040803, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:25 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:14, serverValue:2137676}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1034855, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:13, serverValue:1551460}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=5221981, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.5 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.2 ms, state=CONNECTED}] -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:15, serverValue:1865911}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 INFO DefaultMongoClient:96 - MongoClient get method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:13:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:13:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:13:25 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG query:56 - Query completed -2016-05-03 10:13:25 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:13:25 INFO DefaultMongoClient:1047 - MongoClient download method: OperationDefinition [operation=DOWNLOAD, localResource=VOID, remoteResource=PATH_FOR_INPUT_STREAM] -2016-05-03 10:13:25 INFO DefaultMongoClient:1491 - set last operation: DOWNLOAD -2016-05-03 10:13:25 DEBUG update:56 - Updating documents in namespace remotefs.fs.files on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG update:56 - Update completed -2016-05-03 10:13:25 DEBUG query:56 - Sending query of namespace remotefs.fs.chunks on connection [connectionId{localValue:15, serverValue:1865911}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG query:56 - Query completed -2016-05-03 10:13:25 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:13:25 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:13:25 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:13:25 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:13:25 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:13:25 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:13:25 INFO JCRServlets:267 - Servlet getItemById 5e79b37f-a9d2-407f-9bfa-9add63f5d9d9 -2016-05-03 10:13:25 INFO JCRWorkspaceItem:998 - get PublicLink for item: hcaf_filtered_1.csv -2016-05-03 10:13:25 INFO ServiceEngine:34 - file gCube parameter costructor: shared /gcube -2016-05-03 10:13:25 INFO ServiceEngine:44 - file gCube parameter before: shared /gcube -2016-05-03 10:13:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:13:25 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:13:25 DEBUG ServiceEngine:62 - path(String) - name: hcaf_filtered_1.csv -2016-05-03 10:13:25 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/ -2016-05-03 10:13:25 INFO ServiceEngine:52 - file gCube parameter after: shared /gcube -2016-05-03 10:13:25 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:13:25 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= shared file..getGcubeAccessType() shared -2016-05-03 10:13:25 INFO OperationFactory:39 - getOperation(String) - start getHttpUrl -2016-05-03 10:13:25 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:13:25 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:13:25 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:13:25 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:13:25 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:13:25 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:13:25 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:13:25 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:25 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:25 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@73e042d4, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@2e94826b, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@3aed8ac5, socketFactory=javax.net.DefaultSocketFactory@4131a9bc, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}} -2016-05-03 10:13:25 INFO MongoIO:106 - new mongo connection pool opened -2016-05-03 10:13:25 INFO cluster:71 - No server chosen by PrimaryServerSelector from cluster description ClusterDescription{type=UNKNOWN, connectionMode=MULTIPLE, all=[ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}]}. Waiting for 30000 ms before timing out -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:16, serverValue:255156}] to mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=985796, setName='storagedev', canonicalAddress=mongo2-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:25 INFO cluster:71 - Discovered cluster type of REPLICA_SET -2016-05-03 10:13:25 INFO cluster:71 - Adding discovered server mongo4-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:25 INFO cluster:71 - Adding discovered server mongo1-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:19, serverValue:2137677}] to mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:17, serverValue:1865912}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=795411, setName='storagedev', canonicalAddress=mongo1-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 8]}, minWireVersion=0, maxWireVersion=3, electionId=56c481dca32e5d3f9711532d, maxDocumentSize=16777216, roundTripTimeNanos=1154439, setName='storagedev', canonicalAddress=mongo3-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:25 INFO cluster:71 - Discovered replica set primary mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:18, serverValue:1551461}] to mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 INFO cluster:71 - Monitor thread successfully connected to server with description ServerDescription{address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, state=CONNECTED, ok=true, version=ServerVersion{versionList=[3, 0, 7]}, minWireVersion=0, maxWireVersion=3, electionId=null, maxDocumentSize=16777216, roundTripTimeNanos=1294638, setName='storagedev', canonicalAddress=mongo4-d-d4s.d4science.org:27017, hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], passives=[mongo4-d-d4s.d4science.org:27017], arbiters=[mongo1-d-d4s.d4science.org:27017], primary='mongo3-d-d4s.d4science.org:27017', tagSet=TagSet{[]}} -2016-05-03 10:13:25 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=0.8 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}] -2016-05-03 10:13:25 INFO connection:71 - Opened connection [connectionId{localValue:20, serverValue:1865913}] to mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865913}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865913}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 DEBUG command:56 - Sending command {createIndexes : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865913}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 DEBUG DefaultMongoClient:1405 - MongoDB - pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:13:25 INFO MongoIO:137 - MongoDB - retrieve object from pathServer: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:13:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.files'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865913}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 DEBUG command:56 - Sending command {count : BsonString{value='fs.chunks'}} to database remotefs on connection [connectionId{localValue:20, serverValue:1865913}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG command:56 - Command execution completed -2016-05-03 10:13:25 INFO MongoIO:168 - remote object is not a validID : /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:13:25 DEBUG query:56 - Sending query of namespace remotefs.fs.files on connection [connectionId{localValue:20, serverValue:1865913}] to server mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:25 DEBUG query:56 - Query completed -2016-05-03 10:13:25 INFO MongoIO:186 - object found hcaf_filtered_1.csv -2016-05-03 10:13:25 DEBUG connection:56 - Closing connection connectionId{localValue:19, serverValue:2137677} -2016-05-03 10:13:25 DEBUG connection:56 - Closing connection connectionId{localValue:16, serverValue:255156} -2016-05-03 10:13:25 INFO connection:71 - Closed connection [connectionId{localValue:20, serverValue:1865913}] to mongo3-d-d4s.d4science.org:27017 because the pool has been closed. -2016-05-03 10:13:25 DEBUG connection:56 - Closing connection connectionId{localValue:18, serverValue:1551461} -2016-05-03 10:13:25 DEBUG connection:56 - Closing connection connectionId{localValue:20, serverValue:1865913} -2016-05-03 10:13:25 INFO MongoIO:508 - Mongo has been closed -2016-05-03 10:13:25 DEBUG connection:56 - Closing connection connectionId{localValue:17, serverValue:1865912} -2016-05-03 10:13:25 DEBUG Operation:81 - PATH /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/StatisticalTest/Bioclimate_Hcaf/hcaf_filtered_1.csv -2016-05-03 10:13:25 INFO Operation:55 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:13:25 INFO Operation:57 - URL generated: smp://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:13:25 DEBUG Operation:87 - translating: http://data-d.d4science.org/5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:13:25 DEBUG Operation:90 - base Url extracted is: http://data-d.d4science.org/ -2016-05-03 10:13:25 DEBUG Operation:93 - get params: http://data-d.d4science.org/ 5YLjrhUGqZ5s/MRotkLvTYUJhILxrlVhGmbP5+HKCzc= -2016-05-03 10:13:25 INFO Operation:99 - uri translated in http url: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:13:25 INFO Operation:65 - URL translated: http://data-d.d4science.org/NVlManJoVUdxWjVzL01Sb3RrTHZUWVVKaElMeHJsVmhHbWJQNStIS0N6Yz0 -2016-05-03 10:13:35 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:35 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.2 ms, state=CONNECTED}] -2016-05-03 10:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.0 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.2 ms, state=CONNECTED}] -2016-05-03 10:13:35 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=5.2 ms, state=CONNECTED}] -2016-05-03 10:13:35 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:35 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.5 ms, state=CONNECTED}] -2016-05-03 10:13:45 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:45 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.5 ms, state=CONNECTED}] -2016-05-03 10:13:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.1 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.5 ms, state=CONNECTED}] -2016-05-03 10:13:45 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.5 ms, state=CONNECTED}] -2016-05-03 10:13:45 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:45 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.7 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-03 10:13:55 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:13:55 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:13:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.3 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-03 10:13:55 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:13:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-03 10:13:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=4.0 ms, state=CONNECTED}] -2016-05-03 10:13:55 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:13:55 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}] -2016-05-03 10:13:58 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:13:58 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:14:05 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:05 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:05 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.4 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}] -2016-05-03 10:14:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}] -2016-05-03 10:14:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.8 ms, state=CONNECTED}] -2016-05-03 10:14:05 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:05 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}] -2016-05-03 10:14:15 DEBUG cluster:56 - Checking status of mongo3-d-d4s.d4science.org:27017 -2016-05-03 10:14:15 DEBUG cluster:56 - Checking status of mongo2-d-d4s.d4science.org:27017 -2016-05-03 10:14:15 DEBUG cluster:56 - Checking status of mongo1-d-d4s.d4science.org:27017 -2016-05-03 10:14:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=1.8 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}] -2016-05-03 10:14:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.6 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}] -2016-05-03 10:14:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.4 ms, state=CONNECTED}] -2016-05-03 10:14:15 DEBUG cluster:56 - Checking status of mongo4-d-d4s.d4science.org:27017 -2016-05-03 10:14:15 DEBUG cluster:56 - Updating cluster description to {type=REPLICA_SET, servers=[{address=mongo1-d-d4s.d4science.org:27017, type=REPLICA_SET_ARBITER, roundTripTime=1.2 ms, state=CONNECTED}, {address=mongo2-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=1.9 ms, state=CONNECTED}, {address=mongo3-d-d4s.d4science.org:27017, type=REPLICA_SET_PRIMARY, roundTripTime=2.0 ms, state=CONNECTED}, {address=mongo4-d-d4s.d4science.org:27017, type=REPLICA_SET_SECONDARY, roundTripTime=3.1 ms, state=CONNECTED}] -2016-05-03 10:14:37 DEBUG AccessLogger:124 - Creating a message handling object in order to handle the message queue -2016-05-03 10:14:37 DEBUG AccessLogger:44 - Constructing a new access logger. Create a new file if it does not exist for the current date -2016-05-03 10:14:37 INFO DataMinerManagerServiceImpl:71 - DataMinerManager started! -2016-05-03 10:14:37 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:14:37 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:14:37 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:14:37 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:14:37 INFO ScopeProviderScanner:50 - using scope provider org.gcube.common.scope.impl.DefaultScopeProvider@3ba3fd0e -2016-05-03 10:14:37 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:37 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:14:37 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:14:37 DEBUG TemplateModel:83 - 2016-05-03 10:14:37, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:14:37 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:14:37 DEBUG DataMinerManagerServiceImpl:90 - UserInfo: UserInfo [username=giancarlo.panichi, groupId=0, groupName=null, scope=/gcube/devsec/devVRE, scopeName=/gcube/devsec/devVRE, userEmailAddress=null, userFullName=null] -2016-05-03 10:14:39 INFO SessionUtil:49 - no user found in session, use test user -2016-05-03 10:14:39 DEBUG ASLSession:302 - Scope is null, returning null -2016-05-03 10:14:39 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:14:39 INFO ASLSession:319 - The scope about to set is: /gcube/devsec/devVRE -2016-05-03 10:14:39 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:39 INFO ASLSession:352 - Logging the entrance -2016-05-03 10:14:39 DEBUG TemplateModel:82 - A new entry line has been created. The entry is: -2016-05-03 10:14:39 DEBUG TemplateModel:83 - 2016-05-03 10:14:39, VRE -> /gcube/devsec/devVRE, USER -> giancarlo.panichi, ENTRY_TYPE -> Login_To_VRE, MESSAGE -> First login to the vre - -2016-05-03 10:14:39 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:14:39 INFO DiscoveryDelegate:108 - executing query for authorization-service/gcube/service endpoints: org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:14:39 INFO DefaultScanner:63 - matched 28 resources from 112 urls in 133 ms -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/d4science.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/preprod.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/vo1.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/openbio.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/cnr.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/testing.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcube.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/gcubeapps.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/isti.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/farm.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/ecosystem.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/securevo.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devsec.servicemap -2016-05-03 10:14:39 INFO ServiceMapScanner:52 - loading jar:file:/home/giancarlo/workspace2/data-miner-manager/target/data-miner-manager-1.0.0-SNAPSHOT/WEB-INF/lib/common-scope-maps-1.0.3-SNAPSHOT.jar!/devnext.servicemap -2016-05-03 10:14:39 INFO StubFactory:144 - fetching wsdl for XQueryAccessService at http://dlib01.isti.cnr.it:8080/wsrf/services/gcube/informationsystem/collector/XQueryAccess?wsdl -2016-05-03 10:14:39 INFO StubCache:63 - caching stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:14:39 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() -2016-05-03 10:14:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ScopeHandler@60f2b86c -2016-05-03 10:14:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.TargetServiceHandler@27b10a2f -2016-05-03 10:14:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.ClientInfoHandler@6d144ab -2016-05-03 10:14:39 INFO HandlerRegistry:30 - loaded call handler org.gcube.common.clients.stubs.jaxws.handlers.LegacyWSAddressingHandler@52ef9da0 -2016-05-03 10:14:39 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text() in 105 ms -2016-05-03 10:14:40 INFO DiscoveryDelegate:133 - calling authorization-service/gcube/service @
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 -2016-05-03 10:14:40 DEBUG DefaultEndpointCache:51 - caching
http://node27.d.d4science.research-infrastructures.eu:8080/authorization-service/gcube/service
 for Key [name=authorization-service/gcube/service, query=org.gcube.resources.discovery.client.queries.impl.XQuery@8a6a1908=declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RunningInstance')//Document/Data/ic:Profile/Resource, $entry in $resource/Profile/AccessPoint/RunningInstanceInterfaces/Endpoint where ($resource/Profile/ServiceClass/text() eq 'Common') and ($resource/Profile/ServiceName/text() eq 'AuthorizationService') and ($resource/Profile/DeploymentData/Status/text() eq 'ready') and (contains($entry/string(),'authorization-service/gcube/service')) return $entry/text(), scope=/gcube/devsec/devVRE] -2016-05-03 10:14:40 INFO SessionUtil:93 - received token: f0666597-4302-49ce-bea2-555b94e569cb -2016-05-03 10:14:40 DEBUG SClient4WPSBuilder:28 - Build SM4WPS -2016-05-03 10:14:40 DEBUG SClient4WPSBuilder:29 - ServiceCredential: ServiceCredential [username=giancarlo.panichi, scope=/gcube/devsec/devVRE, token=f0666597-4302-49ce-bea2-555b94e569cb] -2016-05-03 10:14:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:14:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() -2016-05-03 10:14:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataAnalysis') and ($resource/Profile/Name/text() eq 'DataMiner') return $resource/Profile/AccessPoint/Interface/Endpoint/text() in 27 ms -2016-05-03 10:14:40 DEBUG SClient4WPS:115 - Service Address retrieved:[http://dataminer-d-d4s.d4science.org/wps/WebProcessingService] -2016-05-03 10:14:40 INFO SClient4WPS:120 - DataMiner service address found: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:14:40 DEBUG SClient4WPS:131 - Cancel computation servlet: http://dataminer-d-d4s.d4science.org/wps/CancelComputationServlet -2016-05-03 10:14:40 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:14:40 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:14:40 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:14:40 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:14:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:40 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:14:40 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:14:40 DEBUG DataMinerManagerServiceImpl:387 - getDataMinerWorkArea() -2016-05-03 10:14:40 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:40 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:40 INFO HomeLibraryConfiguration:76 - calculating the persistence folder -2016-05-03 10:14:40 INFO HomeLibraryConfiguration:103 - Using tmp dir /tmp -2016-05-03 10:14:40 INFO HomeManageFactory:103 - getInstance persistenceRoot: /tmp/home_library_persistence -2016-05-03 10:14:40 DEBUG JCRHomeManagerFactory:44 - Initialize content manager -2016-05-03 10:14:40 DEBUG JCRRepository:271 - Initialize repository -2016-05-03 10:14:40 DEBUG JCRRepository:97 - scope for repository creation is /gcube caller scope is /gcube/devsec/devVRE -2016-05-03 10:14:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 33 -2016-05-03 10:14:40 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:14:40 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource -2016-05-03 10:14:40 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'HomeLibraryRepository' ) return $resource in 22 ms -2016-05-03 10:14:40 DEBUG JCRRepository:152 - user is workspacerep.imarine password is null?false and repository is null?false -2016-05-03 10:14:40 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:40 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:40 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:40 INFO JCRHomeManager:71 - User giancarlo.panichi not found, creating a new one. -2016-05-03 10:14:40 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:40 INFO JCRRepository:279 - getHome giancarlo.panichi -2016-05-03 10:14:41 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:14:41 DEBUG SClient4WPS:252 - OperatorClass: [OperatorsClassification [name=User Perspective, operatorCategories=[OperatorCategory [id=ANOMALIES_DETECTION, name=Anomalies Detection, briefDescription=ANOMALIES_DETECTION, description=ANOMALIES_DETECTION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=BAYESIAN_METHODS, name=Bayesian Methods, briefDescription=BAYESIAN_METHODS, description=BAYESIAN_METHODS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CHARTS, name=Charts, briefDescription=CHARTS, description=CHARTS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CLIMATE, name=Climate, briefDescription=CLIMATE, description=CLIMATE, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=CORRELATION_ANALYSIS, name=Correlation Analysis, briefDescription=CORRELATION_ANALYSIS, description=CORRELATION_ANALYSIS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=DATABASES, name=Databases, briefDescription=DATABASES, description=DATABASES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=FILTERING, name=Filtering, briefDescription=FILTERING, description=FILTERING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=GEO_PROCESSING, name=Geo Processing, briefDescription=GEO_PROCESSING, description=GEO_PROCESSING, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=MAPS, name=Maps, briefDescription=MAPS, description=MAPS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=OCCURRENCES, name=Occurrences, briefDescription=OCCURRENCES, description=OCCURRENCES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=PERFORMANCES_EVALUATION, name=Performances Evaluation, briefDescription=PERFORMANCES_EVALUATION, description=PERFORMANCES_EVALUATION, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=STOCK_ASSESSMENT, name=Stock Assessment, briefDescription=STOCK_ASSESSMENT, description=STOCK_ASSESSMENT, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TAXA, name=Taxa, briefDescription=TAXA, description=TAXA, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=TIME_SERIES, name=Time Series, briefDescription=TIME_SERIES, description=TIME_SERIES, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false]], hasImage=false], OperatorCategory [id=VESSELS, name=Vessels, briefDescription=VESSELS, description=VESSELS, operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false]], hasImage=false]], operators=[Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS, name=Absence Cells From Aquamaps, briefDescription=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, description=An algorithm producing cells and features (HCAF) for a species containing absense points taken by an Aquamaps Distribution, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF, name=Bioclimate Hcaf, briefDescription=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, description=A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN, name=Bioclimate Hspen, briefDescription=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, description=A transducer algorithm that generates a table containing species envelops (HSPEN) in time, i.e. models capturing species tolerance with respect to environmental parameters, used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the salinity values in several ranges of a set of species envelopes, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM, name=Bionym, briefDescription=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=An algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL, name=Bionym Local, briefDescription=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., description=A fast version of the algorithm implementing BiOnym, a flexible workflow approach to taxon name matching. The workflow allows to activate several taxa names matching algorithms and to get the list of possible transcriptions for a list of input raw species names with possible authorship indication., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.CMSY, name=Cmsy, briefDescription=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., description=An algorithm to estimate the Maximum Sustainable Yield from a catch statistic. If also a Biomass trend is provided, MSY estimation is provided also with higher precision. The method has been developed by R. Froese, G. Coro, N. Demirel and K. Kleisner., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR, name=Csquare Column Creator, briefDescription=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the CSquare codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN, name=Dbscan, briefDescription=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the density-based spatial clustering of applications with noise (DBSCAN) algorithm. A maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS, name=Discrepancy Analysis, briefDescription=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., description=An evaluator algorithm that compares two tables containing real valued vectors. It drives the comparison by relying on a geographical distance threshold and a threshold for K-Statistic., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION, name=Esri Grid Extraction, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one ESRI GRID ASCII file containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR, name=Fao Ocean Area Column Creator, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude and latitude columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT, name=Fao Ocean Area Column Creator From Quadrant, briefDescription=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., description=An algorithm that adds a column containing the FAO Ocean Area codes associated to longitude, latitude and quadrant columns., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS, name=Generic Charts, briefDescription=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., description=An algorithm producing generic charts of attributes vs. quantities. Charts are displayed per quantity column. Histograms, Scattering and Radar charts are produced for the top ten quantities. A gaussian distribution reports overall statistics for the quantities., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART, name=Geo Chart, briefDescription=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., description=An algorithm producing a charts that displays quantities as colors of countries. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER, name=Hcaf Filter, briefDescription=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), description=An algorithm producing a HCAF table on a selected Bounding Box (default identifies Indonesia), operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS, name=Hrs, briefDescription=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., description=An evaluator algorithm that calculates the Habitat Representativeness Score, i.e. an indicator of the assessment of whether a specific survey coverage or another environmental features dataset, contains data that are representative of all available habitat variable combinations in an area., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.ICCAT_VPA, name=Iccat Vpa, briefDescription=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., description=An algorithm for stock assessment of catch statistics published by the International Commission for the Conservation of Atlantic Tunas (ICCAT). Produces summary statistics about a stock, involving assessment of fishing mortality, abundance, catch trend, fecundity and recruitment. Developed by IFREMER and IRD. Contact persons: Sylvain Bonhommeau sylvain.bonhommeau@ifremer.fr, Julien Barde julien.barde@ird.fr., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS, name=Kmeans, briefDescription=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., description=A clustering algorithm for real valued vectors that relies on the k-means algorithm, i.e. a method aiming to partition n observations into k clusters in which each observation belongs to the cluster with the nearest mean, serving as a prototype of the cluster. A Maximum of 4000 points is allowed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON, name=Maps Comparison, briefDescription=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., description=An algorithm for comparing two OGC/NetCDF maps in seamless way to the user. The algorithm assesses the similarities between two geospatial maps by comparing them in a point-to-point fashion. It accepts as input the two geospatial maps (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) and some parameters affecting the comparison such as the z-index, the time index, the comparison threshold. Note: in the case of WFS layers it makes comparisons on the last feature column., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING, name=Max Ent Niche Modelling, briefDescription=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, description=A Maximum-Entropy model for species habitat modeling, based on the implementation by Shapire et al. v 3.3.3k, Princeton University, http://www.cs.princeton.edu/schapire/maxent/. In this adaptation for the D4Science infrastructure, the software accepts a table produced by the Species Product Discovery service and a set of environmental layers in various formats (NetCDF, WFS, WCS, ASC, GeoTiff) via direct links or GeoExplorer UUIDs. The user can also establish the bounding box and the spatial resolution (in decimal deg.) of the training and the projection. The application will adapt the layers to that resolution if this is higher than the native one.The output contains: a thumbnail map of the projected model, the ROC curve, the Omission/Commission chart, a table containing the raw assigned values, a threshold to transform the table into a 0-1 probability distribution, a report of the importance of the used layers in the model, ASCII representations of the input layers to check their alignment.Other processes can be later applied to the raw values to produce a GIS map (e.g. the Statistical Manager Points-to-Map process) and results can be shared. Demo video: http://goo.gl/TYYnTO and instructions http://wiki.i-marine.eu/index.php/MaxEnt, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT, name=Occurrence Enrichment, briefDescription=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., description=An algorithm performing occurrences enrichment. Takes as input one table containing occurrence points for a set of species and a list of environmental layer, taken either from the e-infrastructure GeoNetwork (through the GeoExplorer application) or from direct HTTP links. Produces one table reporting the set of environmental values associated to the occurrence points., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION, name=Presence Cells Generation, briefDescription=An algorithm producing cells and features (HCAF) for a species containing presence points, description=An algorithm producing cells and features (HCAF) for a species containing presence points, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS, name=Quality Analysis, briefDescription=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, description=An evaluator algorithm that assesses the effectiveness of a distribution model by computing the Receiver Operating Characteristics (ROC), the Area Under Curve (AUC) and the Accuracy of a model, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER, name=Raster Data Publisher, briefDescription=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., description=This algorithm publishes a raster file as a maps or datasets in the e-Infrastructure. NetCDF-CF files are encouraged, as WMS and WCS maps will be produced using this format. For other types of files (GeoTiffs, ASC etc.) only the raw datasets will be published. The resulting map or dataset will be accessible via the VRE GeoExplorer by the VRE participants., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION, name=Sgvm Interpolation, briefDescription=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, description=An interpolation method relying on the implementation by the Study Group on VMS (SGVMS). The method uses two interpolation approached to simulate vessels points at a certain temporal resolution. The input is a file in TACSAT format uploaded on the Statistical Manager. The output is another TACSAT file containing interpolated points.The underlying R code has been extracted from the SGVM VMSTools framework. This algorithm comes after a feasibility study (http://goo.gl/risQre) which clarifies the features an e-Infrastructure adds to the original scripts. Limitation: the input will be processed up to 10000 vessels trajectory points. Credits: Hintzen, N. T., Bastardie, F., Beare, D., Piet, G. J., Ulrich, C., Deporte, N., Egekvist, J., et al. 2012. VMStools: Open-source software for the processing, analysis and visualisation of fisheries logbook and VMS data. Fisheries Research, 115-116: 31-43. Hintzen, N. T., Piet, G. J., and Brunel, T. 2010. Improved estimation of trawling tracks using cubic Hermite spline interpolation of position registration data. Fisheries Research, 101: 108-115. VMStools, available as an add-on package for R. Documentation available at https://code.google.com/p/vmstools/. Build versions of VMStools for Window, Mac, Linux available at https://docs.google.com/. Authors: Niels T. Hintzen, Doug Beare, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY, name=Submitquery, briefDescription=Algorithm that allows to submit a query, description=Algorithm that allows to submit a query, operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART, name=Time Geo Chart, briefDescription=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., description=An algorithm producing an animated gif displaying quantities as colors in time. The color indicates the sum of the values recorded in a country., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS, name=Time Series Analysis, briefDescription=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., description=An algorithms applying signal processing to a non uniform time series. A maximum of 10000 distinct points in time is allowed to be processed. The process uniformly samples the series, then extracts hidden periodicities and signal properties. The sampling period is the shortest time difference between two points. Finally, by using Caterpillar-SSA the algorithm forecasts the Time Series. The output shows the detected periodicity, the forecasted signal and the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS, name=Time Series Charts, briefDescription=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., description=An algorithm producing time series charts of attributes vs. quantities. Charts are displayed per quantity column and superposing quantities are summed., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION, name=Timeextraction, briefDescription=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE, name=Timeextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR, name=Xyextractor, briefDescription=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to an environmental feature repository (e.g. NETCDF, ASC, GeoTiff files etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial repository ID (via their UUIDs in the infrastructure spatial data repository - recoverable through the Geoexplorer portlet) or a direct link to a file and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE, name=Xyextractor Table, briefDescription=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., description=An algorithm to extract values associated to a table containing geospatial features (e.g. Vessel Routes, Species distribution maps etc. ). A grid of points at a certain resolution is specified by the user and values are associated to the points from the environmental repository. It accepts as one geospatial table and the specification about time and space. The algorithm produces one table containing the values associated to the selected bounding box., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION, name=Zextraction, briefDescription=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., description=An algorithm to extract the Z values from a geospatial features repository (e.g. NETCDF, ASC, GeoTiff files etc. ). The algorithm analyses the repository and automatically extracts the Z values according to the resolution wanted by the user. It produces one chart of the Z values and one table containing the values., operatorParameters=[], hasImage=false], Operator [id=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE, name=Zextraction Table, briefDescription=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., description=An algorithm to extract a time series of values associated to a table containing geospatial information. The algorithm analyses the time series and automatically searches for hidden periodicities. It produces one chart of the time series, one table containing the time series values and possibly the spectrogram., operatorParameters=[], hasImage=false]]]] -2016-05-03 10:14:41 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:14:41 INFO JCRRepository:307 - giancarlo.panichi - USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:14:41 INFO JCRRepository:377 - skip init in JCRRepository -2016-05-03 10:14:42 DEBUG JCRUserManager:520 - Response 3.1.1 - -2016-05-03 10:14:42 INFO JCRWorkspace:2962 - giancarlo.panichi --> USER VERSION: 3.1.1 - HL VERSION: 3.1.1 -2016-05-03 10:14:42 INFO JCRWorkspace:3019 - skip init in JCRWorkspace for user: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRHomeManager:82 - User created: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:42 INFO JCRServlets:267 - Servlet getItemById efc48ebb-f682-4636-9a98-1cbee166e336 -2016-05-03 10:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner by giancarlo.panichi -2016-05-03 10:14:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Input Data Sets by giancarlo.panichi -2016-05-03 10:14:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Output Data Sets by giancarlo.panichi -2016-05-03 10:14:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:42 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:42 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:42 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:42 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:42 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:42 INFO JCRServlets:267 - Servlet getItemById 9bb0fe87-356b-4b9d-a213-04293559dc20 -2016-05-03 10:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/DataMiner/Computations by giancarlo.panichi -2016-05-03 10:14:42 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:42 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:43 DEBUG ASLSession:125 - Could not parse file null/webapps/ROOT/WEB-INF/web.xml for session-timeout property. Parsing from jar. -2016-05-03 10:14:43 DEBUG ASLSession:141 - Could not parse file properties.xml for property. Setting it to default. -2016-05-03 10:14:43 INFO ASLSession:147 - Session Timeout is: 1800000 -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:14:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:43 INFO JCRServlets:267 - Servlet getItemById 8de72040-33cc-4c18-b112-212bdfc2353e -2016-05-03 10:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:43 INFO JCRServlets:267 - Servlet getItemById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 -2016-05-03 10:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:43 INFO JCRServlets:142 - Calling servlet getChildrenById 8de72040-33cc-4c18-b112-212bdfc2353e by giancarlo.panichi -2016-05-03 10:14:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 123 msc 0 sec -2016-05-03 10:14:43 INFO JCRServlets:142 - Calling servlet getChildrenById 9258832c-2cd0-45cb-9625-0ae9f6fa3662 by giancarlo.panichi -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:43 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:43 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:43 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:43 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:43 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:43 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:43 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:43 INFO JCRServlets:267 - Servlet getItemById f7245109-f1c3-4c5a-828d-3381919a5f5a -2016-05-03 10:14:43 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:43 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:43 INFO JCRServlets:142 - Calling servlet getChildrenById f7245109-f1c3-4c5a-828d-3381919a5f5a by giancarlo.panichi -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:14:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:14:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 140 msc 0 sec -2016-05-03 10:14:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:14:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:14:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource -2016-05-03 10:14:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'Service' and $resource/Profile/Name eq 'HTTP-URI-Resolver' ) return $resource in 17 ms -2016-05-03 10:14:43 DEBUG StorageClient:316 - server not set. Try to query IS in scope: /gcube -2016-05-03 10:14:43 INFO ISClientConnector:82 - found only one RR, take it -2016-05-03 10:14:43 INFO ISClientConnector:140 - Type of backend found MongoDB -2016-05-03 10:14:43 INFO ISClientConnector:57 - ISCACHE: ELEMENT INSERTED -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:14:43 DEBUG StorageClient:517 - set scope: /gcube -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:14:43 INFO StubCache:70 - using cached stub for interface org.gcube.resources.discovery.icclient.stubs.CollectorStub -2016-05-03 10:14:43 INFO ICClient:75 - executing query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource -2016-05-03 10:14:43 INFO ICClient:83 - executed query declare namespace ic = 'http://gcube-system.org/namespaces/informationsystem/registry'; for $resource in collection('/db/Profiles/RuntimeResource')//Document/Data/ic:Profile/Resource where ($resource/Profile/Category/text() eq 'DataStorage' and $resource/Profile/Name eq 'StorageManager' ) return $resource in 18 ms -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube in thread 36 -2016-05-03 10:14:43 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:43 INFO WorkspaceExplorerServiceImpl:188 - end time - 356 msc 0 sec -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:47 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:14:47 INFO SessionUtil:74 - SessionUtil: aslSession giancarlo.panichi /gcube/devsec/devVRE -2016-05-03 10:14:47 INFO SClient4WPS:636 - Parameters of algorithm org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF -2016-05-03 10:14:47 DEBUG SClient4WPS:271 - Describe Process WPS URL: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:14:47 INFO StatWPSClientSession:84 - CONNECT -2016-05-03 10:14:47 DEBUG SClient4WPS:294 - - org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF - BIOCLIMATE_HCAF - A transducer algorithm that generates an Half-degree Cells Authority File (HCAF) dataset for a certain time frame, with environmental parameters used by the AquaMaps approach. Evaluates the climatic changes impact on the variation of the ocean features contained in HCAF tables - - - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - - - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - - - - - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - - -2016-05-03 10:14:47 DEBUG SClient4WPS:298 - WPSClient->Fetching Inputs -2016-05-03 10:14:47 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_List - list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - Name of the parameter: HCAF_Table_List. list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] - - - - text/xml - - - - - text/xml - - - text/csv - - - text/plain - - - - -2016-05-03 10:14:47 DEBUG SClient4WPS:300 - WPSClient->Input: - HCAF_Table_Names - list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - Name of the parameter: HCAF_Table_Names. list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) - - - - - -2016-05-03 10:14:47 DEBUG SClient4WPS:305 - WPSClient->Fetching Outputs -2016-05-03 10:14:47 DEBUG SClient4WPS:307 - WPSClient->Output: - non_deterministic_output - NonDeterministicOutput - Output that is not predetermined - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - - text/xml; subtype=gml/2.1.2 - http://schemas.opengis.net/gml/2.1.2/feature.xsd - - - - -2016-05-03 10:14:47 INFO StatWPSClientSession:133 - service removed successfully: http://dataminer-d-d4s.d4science.org/wps/WebProcessingService -2016-05-03 10:14:47 DEBUG WPS2SM:312 - Conversion to SM Type->HCAF_Table_List is a Complex Input -2016-05-03 10:14:47 DEBUG WPS2SM:318 - Max Megabytes: 1 -2016-05-03 10:14:47 DEBUG WPS2SM:203 - MimeType: text/xml -2016-05-03 10:14:47 DEBUG WPS2SM:204 - Schema: null -2016-05-03 10:14:47 DEBUG WPS2SM:205 - Encoding: null -2016-05-03 10:14:47 DEBUG WPS2SM:226 - Machter title: list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:14:47 DEBUG WPS2SM:227 - Machter find: true -2016-05-03 10:14:47 DEBUG WPS2SM:228 - Machter group: [a sequence of http links separated by | , each indicating a table -2016-05-03 10:14:47 DEBUG WPS2SM:230 - Machter start: 31 -2016-05-03 10:14:47 DEBUG WPS2SM:232 - Machter end: 97 -2016-05-03 10:14:47 DEBUG WPS2SM:233 - Machter Group Count: 1 -2016-05-03 10:14:47 DEBUG WPS2SM:236 - Matcher separator: | -2016-05-03 10:14:47 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] -2016-05-03 10:14:47 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_List -2016-05-03 10:14:47 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:14:47 DEBUG SClient4WPS:653 - InputParameter: TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST] -2016-05-03 10:14:47 DEBUG WPS2SM:287 - Conversion to SM Type->HCAF_Table_Names is a Literal Input -2016-05-03 10:14:47 DEBUG WPS2SM:92 - WPS type: -2016-05-03 10:14:47 DEBUG WPS2SM:94 - Guessed type: java.lang.String -2016-05-03 10:14:47 DEBUG WPS2SM:100 - Guessed default value: -2016-05-03 10:14:47 DEBUG WPS2SM:148 - Machter title: list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1] -2016-05-03 10:14:47 DEBUG WPS2SM:149 - Machter find: true -2016-05-03 10:14:47 DEBUG WPS2SM:150 - Machter group: a sequence of values separated by | -2016-05-03 10:14:47 DEBUG WPS2SM:151 - Machter start: 47 -2016-05-03 10:14:47 DEBUG WPS2SM:152 - Machter end: 82 -2016-05-03 10:14:47 DEBUG WPS2SM:153 - Machter Group Count: 1 -2016-05-03 10:14:47 DEBUG WPS2SM:157 - Matcher separator: | -2016-05-03 10:14:47 DEBUG WPS2SM:323 - Conversion to SM Type->Title:list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) -2016-05-03 10:14:47 DEBUG WPS2SM:324 - Conversion to SM Type->Name:HCAF_Table_Names -2016-05-03 10:14:47 DEBUG WPS2SM:325 - Conversion to SM Type->Number of Inputs to Manage:1 -2016-05-03 10:14:47 DEBUG SClient4WPS:653 - InputParameter: ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST] -2016-05-03 10:14:47 DEBUG SClient4WPS:657 - Parameters: [TabularListParameter [value=null, separator=|, templates=[], name=HCAF_Table_List, description=list of HCAF tables to analyze [a sequence of http links separated by | , each indicating a table in UTF-8 encoding following this template: (HCAF) http://goo.gl/SZG9uM] [Max MB Size:1; Min N. of Entries:1; Max N. of Entries:1], typology=TABULAR_LIST], ListParameter [type=java.lang.String, value=null, separator=|, name=HCAF_Table_Names, description=list of HCAF table names to be used as labels [a sequence of values separated by | ] (format: String) [Min N. of Entries:1; Max N. of Entries:1], typology=LIST]] -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:14:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:14:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:47 DEBUG ASLSession:458 - Getting security token: null in thread 34 -2016-05-03 10:14:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 34 -2016-05-03 10:14:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:47 INFO JCRWorkspace:2549 - getMySpecialFolders: /Home/giancarlo.panichi/Workspace/MySpecialFolders -2016-05-03 10:14:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:14:47 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:14:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:47 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:47 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:14:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:47 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:47 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:47 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:47 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:47 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:47 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:47 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:47 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:47 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:48 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:48 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:14:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:48 INFO JCRServlets:142 - Calling servlet getChildrenById efc48ebb-f682-4636-9a98-1cbee166e336 by giancarlo.panichi -2016-05-03 10:14:48 DEBUG ItemBuilder:108 - Is shared folder: test -2016-05-03 10:14:48 DEBUG ItemBuilder:108 - Is shared folder: Cotrix test -2016-05-03 10:14:48 DEBUG ItemBuilder:108 - Is shared folder: GPImg -2016-05-03 10:14:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:14:48 DEBUG ItemBuilder:108 - Is shared folder: SAI_ImportBigProject -2016-05-03 10:14:48 DEBUG ItemBuilder:108 - Is shared folder: StatisticalAlgorithmsImporter -2016-05-03 10:14:48 DEBUG ItemBuilder:108 - Is shared folder: rasters -2016-05-03 10:14:48 INFO WorkspaceExplorerServiceImpl:142 - end time - 188 msc 0 sec -2016-05-03 10:14:48 INFO WorkspaceExplorerServiceImpl:145 - Returning children size: 41 -2016-05-03 10:14:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/MySpecialFolders by giancarlo.panichi -2016-05-03 10:14:48 INFO JCRWorkspace:315 - Getting Workspace of user: giancarlo.panichi -2016-05-03 10:14:48 INFO JCRServlets:238 - Calling Servlet GetItemByPath /Home/giancarlo.panichi/Workspace/ by giancarlo.panichi -2016-05-03 10:14:53 INFO WorkspaceExplorerServiceImpl:600 - getFormattedSize ByItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:14:53 INFO WorkspaceExplorerServiceImpl:486 - get Size By ItemId 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:14:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:14:53 DEBUG ASLSession:458 - Getting security token: null in thread 35 -2016-05-03 10:14:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 35 -2016-05-03 10:14:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:53 INFO WorkspaceExplorerServiceImpl:549 - Get user ACL to FOLDER id: 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:14:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:53 DEBUG ASLSession:458 - Getting security token: null in thread 33 -2016-05-03 10:14:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 33 -2016-05-03 10:14:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:14:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:14:53 INFO JCRServlets:142 - Calling servlet getChildrenById 6543184f-3c92-4982-88ed-1287d525eca2 by giancarlo.panichi -2016-05-03 10:14:53 DEBUG ServiceEngine:306 - get() - start -2016-05-03 10:14:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:14:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:14:53 DEBUG ServiceEngine:62 - path(String) - name: StatisticalTest -2016-05-03 10:14:53 DEBUG ServiceEngine:72 - path(String) - path: /gcube/home/org.gcube.portlets.user/test-home-library/Home/giancarlo.panichi/Workspace/ -2016-05-03 10:14:53 DEBUG OperationManager:67 - connection(boolean) - start -2016-05-03 10:14:53 INFO OperationManager:69 - startOpertion getResource..getGcubeAccessType()= null file..getGcubeAccessType() null -2016-05-03 10:14:53 INFO OperationFactory:39 - getOperation(String) - start getFolderSize -2016-05-03 10:14:53 DEBUG OperationFactory:97 - getOperation(String) - end -2016-05-03 10:14:53 DEBUG GetSize:45 - remotePath: /Home/giancarlo.panichi/Workspace/StatisticalTest/ -2016-05-03 10:14:53 DEBUG BucketCoding:32 - Coding name: path: /Home/giancarlo.panichi/Workspace/StatisticalTest/ rootArea /gcube/home/org.gcube.portlets.user/test-home-library/ -2016-05-03 10:14:53 DEBUG BucketCoding:42 - coding name done -2016-05-03 10:14:53 DEBUG TransportManagerFactory:39 - getOperation(String) - start -2016-05-03 10:14:53 INFO TransportManagerFactory:54 - 0 implementation found. Load default implementation of TransportManager -2016-05-03 10:14:53 DEBUG MongoIO:77 - open mongo connection -2016-05-03 10:14:53 INFO cluster:71 - Cluster created with settings {hosts=[mongo2-d-d4s.d4science.org:27017, mongo3-d-d4s.d4science.org:27017], mode=MULTIPLE, requiredClusterType=UNKNOWN, serverSelectionTimeout='30000 ms', maxWaitQueueSize=150} -2016-05-03 10:14:53 INFO cluster:71 - Adding discovered server mongo2-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:53 DEBUG ASLSession:458 - Getting security token: null in thread 30 -2016-05-03 10:14:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 30 -2016-05-03 10:14:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:53 INFO cluster:71 - Adding discovered server mongo3-d-d4s.d4science.org:27017 to client view of cluster -2016-05-03 10:14:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:53 DEBUG ASLSession:458 - Getting security token: null in thread 36 -2016-05-03 10:14:53 DEBUG DefaultScopeProvider:38 - setting scope /gcube/devsec/devVRE in thread 36 -2016-05-03 10:14:53 INFO HomeManageFactory:196 - loading home. (Username: giancarlo.panichi, scope: /gcube/devsec/devVRE) -2016-05-03 10:14:53 INFO HomeManageFactory:118 - getHomeManagerFactory -2016-05-03 10:14:53 DEBUG JCRHomeManagerFactory:123 - getHomeManager -2016-05-03 10:14:53 INFO JCRHomeManager:48 - getUser portalLogin: giancarlo.panichi -2016-05-03 10:14:53 INFO JCRHomeManager:93 - getHome user: giancarlo.panichi -2016-05-03 10:14:53 DEBUG JCRHomeManager:97 - User is already logged -2016-05-03 10:14:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:14:53 DEBUG cluster:56 - Updating cluster description to {type=UNKNOWN, servers=[{address=mongo2-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}, {address=mongo3-d-d4s.d4science.org:27017, type=UNKNOWN, state=CONNECTING}] -2016-05-03 10:14:53 INFO JCRServlets:267 - Servlet getItemById 6543184f-3c92-4982-88ed-1287d525eca2 -2016-05-03 10:14:53 DEBUG MongoIO:85 - Istantiate MongoDB with options: MongoClientOptions{description='null', readPreference=primaryPreferred, writeConcern=WriteConcern{w=1, wtimeout=0, fsync=false, j=false, codecRegistry=org.bson.codecs.configuration.ProvidersCodecRegistry@7e38b5a6, minConnectionsPerHost=0, maxConnectionsPerHost=30, threadsAllowedToBlockForConnectionMultiplier=5, serverSelectionTimeout=30000, maxWaitTime=120000, maxConnectionIdleTime=0, maxConnectionLifeTime=0, connectTimeout=30000, socketTimeout=0, socketKeepAlive=false, sslEnabled=false, sslInvalidHostNamesAllowed=false, alwaysUseMBeans=false, heartbeatFrequency=10000, minHeartbeatFrequency=500, heartbeatConnectTimeout=20000, heartbeatSocketTimeout=20000, localThreshold=15, requiredReplicaSetName='null', dbDecoderFactory=com.mongodb.DefaultDBDecoder$1@1b826b53, dbEncoderFactory=com.mongodb.DefaultDBEncoder$1@f542441, socketFactory=javax.net.DefaultSocketFactory@5ec70774, cursorFinalizerEnabled=true, connectionPoolSettings=ConnectionPoolSettings{maxSize=30, minSize=0, maxWaitQueueSize=150, maxWaitTimeMS=120000, maxConnectionLifeTimeMS=0, maxConnectionIdleTimeMS=0, maintenanceInitialDelayMS=0, maintenanceFrequencyMS=60000}, socketSettings=SocketSettings{connectTimeoutMS=30000, readTimeoutMS=0, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}, serverSettings=ServerSettings{heartbeatFrequencyMS=10000, minHeartbeatFrequencyMS=500}, heartbeatSocketSettings=SocketSettings{connectTimeoutMS=20000, readTimeoutMS=20000, keepAlive=false, receiveBufferSize=0, sendBufferSize=0}}